Multiple sequence alignment - TraesCS2D01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G319300 chr2D 100.000 2624 0 0 1 2624 410239197 410236574 0.000000e+00 4846
1 TraesCS2D01G319300 chr2D 86.230 1329 97 38 653 1928 410404837 410403542 0.000000e+00 1362
2 TraesCS2D01G319300 chr2D 82.540 252 20 7 507 758 410178044 410177817 1.590000e-47 200
3 TraesCS2D01G319300 chr2D 83.254 209 13 9 1 189 366496156 366496362 3.470000e-39 172
4 TraesCS2D01G319300 chr2A 93.542 1022 37 4 648 1664 578377077 578376080 0.000000e+00 1495
5 TraesCS2D01G319300 chr2A 87.511 1113 76 25 660 1742 578380791 578379712 0.000000e+00 1227
6 TraesCS2D01G319300 chr2A 86.598 97 10 3 1833 1928 578379666 578379572 1.280000e-18 104
7 TraesCS2D01G319300 chr2B 92.195 1025 58 9 651 1665 484887499 484886487 0.000000e+00 1430
8 TraesCS2D01G319300 chr2B 86.857 1225 94 25 737 1928 484890576 484889386 0.000000e+00 1308
9 TraesCS2D01G319300 chr2B 87.045 494 48 9 2 483 61598710 61599199 6.390000e-151 544
10 TraesCS2D01G319300 chr2B 95.833 72 2 1 506 577 484887626 484887556 5.930000e-22 115
11 TraesCS2D01G319300 chr1B 92.264 698 43 8 1936 2624 12600680 12599985 0.000000e+00 979
12 TraesCS2D01G319300 chr1B 91.273 699 50 7 1936 2624 670051337 670050640 0.000000e+00 942
13 TraesCS2D01G319300 chr1B 90.935 706 50 10 1929 2624 40950110 40950811 0.000000e+00 937
14 TraesCS2D01G319300 chr1B 86.465 495 51 4 1 483 58423734 58424224 1.790000e-146 529
15 TraesCS2D01G319300 chr4D 91.977 698 45 9 1936 2624 348414654 348415349 0.000000e+00 968
16 TraesCS2D01G319300 chr4D 86.465 495 48 8 1 481 51959675 51960164 2.310000e-145 525
17 TraesCS2D01G319300 chr4B 91.977 698 45 7 1936 2624 5024994 5025689 0.000000e+00 968
18 TraesCS2D01G319300 chr4B 91.775 693 42 12 1942 2624 2011622 2010935 0.000000e+00 950
19 TraesCS2D01G319300 chr7B 92.006 688 43 10 1944 2624 739479338 739480020 0.000000e+00 955
20 TraesCS2D01G319300 chr7B 86.310 504 55 3 1 491 716463599 716464101 1.070000e-148 536
21 TraesCS2D01G319300 chr7B 92.391 92 5 2 1197 1288 613184470 613184381 2.120000e-26 130
22 TraesCS2D01G319300 chr1D 91.583 701 44 11 1936 2624 300707214 300706517 0.000000e+00 953
23 TraesCS2D01G319300 chr1D 77.976 504 61 20 1 481 482018858 482018382 1.200000e-68 270
24 TraesCS2D01G319300 chr5B 91.429 700 44 12 1936 2624 594275747 594276441 0.000000e+00 946
25 TraesCS2D01G319300 chr6D 89.113 496 39 8 1 483 146943268 146943761 1.040000e-168 603
26 TraesCS2D01G319300 chr6D 84.979 486 64 6 1 483 456650782 456650303 3.930000e-133 484
27 TraesCS2D01G319300 chr6D 77.912 249 34 8 1 234 45495019 45495261 4.560000e-28 135
28 TraesCS2D01G319300 chr3D 87.550 498 44 8 1 483 562219448 562219942 6.340000e-156 560
29 TraesCS2D01G319300 chr3D 86.290 496 47 12 1 483 380173628 380174115 1.080000e-143 520
30 TraesCS2D01G319300 chr7D 86.842 494 47 7 1 481 161134657 161134169 1.070000e-148 536
31 TraesCS2D01G319300 chrUn 80.556 504 57 13 1 481 293811601 293811116 1.490000e-92 350
32 TraesCS2D01G319300 chrUn 80.357 504 58 13 1 481 270107876 270107391 6.950000e-91 344
33 TraesCS2D01G319300 chrUn 76.647 501 55 22 1 481 218121984 218121526 1.220000e-53 220
34 TraesCS2D01G319300 chrUn 83.824 204 11 6 1 184 292180232 292180031 9.650000e-40 174
35 TraesCS2D01G319300 chr5D 89.000 200 22 0 1197 1396 524484497 524484696 5.610000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G319300 chr2D 410236574 410239197 2623 True 4846 4846 100.000000 1 2624 1 chr2D.!!$R2 2623
1 TraesCS2D01G319300 chr2D 410403542 410404837 1295 True 1362 1362 86.230000 653 1928 1 chr2D.!!$R3 1275
2 TraesCS2D01G319300 chr2A 578376080 578380791 4711 True 942 1495 89.217000 648 1928 3 chr2A.!!$R1 1280
3 TraesCS2D01G319300 chr2B 484886487 484890576 4089 True 951 1430 91.628333 506 1928 3 chr2B.!!$R1 1422
4 TraesCS2D01G319300 chr1B 12599985 12600680 695 True 979 979 92.264000 1936 2624 1 chr1B.!!$R1 688
5 TraesCS2D01G319300 chr1B 670050640 670051337 697 True 942 942 91.273000 1936 2624 1 chr1B.!!$R2 688
6 TraesCS2D01G319300 chr1B 40950110 40950811 701 False 937 937 90.935000 1929 2624 1 chr1B.!!$F1 695
7 TraesCS2D01G319300 chr4D 348414654 348415349 695 False 968 968 91.977000 1936 2624 1 chr4D.!!$F2 688
8 TraesCS2D01G319300 chr4B 5024994 5025689 695 False 968 968 91.977000 1936 2624 1 chr4B.!!$F1 688
9 TraesCS2D01G319300 chr4B 2010935 2011622 687 True 950 950 91.775000 1942 2624 1 chr4B.!!$R1 682
10 TraesCS2D01G319300 chr7B 739479338 739480020 682 False 955 955 92.006000 1944 2624 1 chr7B.!!$F2 680
11 TraesCS2D01G319300 chr7B 716463599 716464101 502 False 536 536 86.310000 1 491 1 chr7B.!!$F1 490
12 TraesCS2D01G319300 chr1D 300706517 300707214 697 True 953 953 91.583000 1936 2624 1 chr1D.!!$R1 688
13 TraesCS2D01G319300 chr5B 594275747 594276441 694 False 946 946 91.429000 1936 2624 1 chr5B.!!$F1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 4084 0.029474 ATATCCCCTTGAACCCCCGA 60.029 55.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 4947 0.035317 ATCGACAACTGCTTGCTGGA 59.965 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 169 1.810030 GATGGCGTGGTCGAACTCC 60.810 63.158 0.33 0.69 39.71 3.85
161 174 4.754667 GTGGTCGAACTCCCGCCC 62.755 72.222 0.33 0.00 0.00 6.13
220 234 2.173669 CGCCAGCCGAACTATGTGG 61.174 63.158 0.00 0.00 40.02 4.17
236 250 9.162764 GAACTATGTGGTATTTTCTAAAGCTGA 57.837 33.333 0.00 0.00 0.00 4.26
251 265 1.643292 CTGACATTGTATGCCGGCG 59.357 57.895 23.90 7.94 0.00 6.46
285 299 1.573829 GCATGAACTTTCGGGCGACA 61.574 55.000 0.00 0.00 0.00 4.35
317 331 1.514678 GCATGAATTATGGCCGCGGA 61.515 55.000 33.48 9.86 37.26 5.54
343 357 4.785669 TTTTCAAAATTTGCGTGCGAAT 57.214 31.818 0.00 1.40 0.00 3.34
359 373 1.194547 CGAATATGAAATGGGTCGGCG 59.805 52.381 0.00 0.00 0.00 6.46
364 378 2.047083 AAATGGGTCGGCGCGTTA 60.047 55.556 12.24 0.00 36.02 3.18
391 405 2.439507 ACTGCCGACCCATATCTCAAAT 59.560 45.455 0.00 0.00 0.00 2.32
426 440 1.673009 GGGCGACCGAACCAAATGA 60.673 57.895 0.00 0.00 43.64 2.57
428 442 0.109919 GGCGACCGAACCAAATGAAC 60.110 55.000 0.00 0.00 0.00 3.18
434 448 4.352887 GACCGAACCAAATGAACGAAAAA 58.647 39.130 0.00 0.00 0.00 1.94
481 495 2.450609 GGAACGTTGGAGTTGCTCTA 57.549 50.000 5.00 0.00 39.02 2.43
491 505 0.107654 AGTTGCTCTAACGGGGATGC 60.108 55.000 0.00 0.00 44.15 3.91
492 506 0.107654 GTTGCTCTAACGGGGATGCT 60.108 55.000 0.00 0.00 0.00 3.79
493 507 0.178068 TTGCTCTAACGGGGATGCTC 59.822 55.000 0.00 0.00 0.00 4.26
494 508 1.300233 GCTCTAACGGGGATGCTCG 60.300 63.158 4.37 4.37 0.00 5.03
495 509 1.364171 CTCTAACGGGGATGCTCGG 59.636 63.158 12.39 0.00 0.00 4.63
496 510 2.280186 CTAACGGGGATGCTCGGC 60.280 66.667 12.39 0.00 0.00 5.54
497 511 2.762459 TAACGGGGATGCTCGGCT 60.762 61.111 12.39 0.00 0.00 5.52
498 512 1.456145 TAACGGGGATGCTCGGCTA 60.456 57.895 12.39 0.00 0.00 3.93
499 513 1.461091 TAACGGGGATGCTCGGCTAG 61.461 60.000 12.39 0.00 0.00 3.42
500 514 2.912542 CGGGGATGCTCGGCTAGA 60.913 66.667 0.00 0.00 0.00 2.43
501 515 2.279069 CGGGGATGCTCGGCTAGAT 61.279 63.158 0.00 0.00 0.00 1.98
503 517 0.820871 GGGGATGCTCGGCTAGATAG 59.179 60.000 0.00 0.00 0.00 2.08
522 536 3.787394 GGGACGGTTCACCTGAGA 58.213 61.111 0.00 0.00 0.00 3.27
523 537 2.055299 GGGACGGTTCACCTGAGAA 58.945 57.895 0.00 0.00 0.00 2.87
525 539 0.680061 GGACGGTTCACCTGAGAACT 59.320 55.000 6.77 0.00 45.52 3.01
529 543 2.910688 GGTTCACCTGAGAACTGACA 57.089 50.000 6.77 0.00 45.52 3.58
539 553 5.144692 CTGAGAACTGACAGGAAGAATGA 57.855 43.478 7.51 0.00 0.00 2.57
540 554 5.732633 CTGAGAACTGACAGGAAGAATGAT 58.267 41.667 7.51 0.00 0.00 2.45
542 556 6.169094 TGAGAACTGACAGGAAGAATGATTC 58.831 40.000 7.51 0.00 0.00 2.52
543 557 6.013898 TGAGAACTGACAGGAAGAATGATTCT 60.014 38.462 7.51 0.97 43.15 2.40
544 558 7.179160 TGAGAACTGACAGGAAGAATGATTCTA 59.821 37.037 8.30 0.00 39.61 2.10
545 559 8.088463 AGAACTGACAGGAAGAATGATTCTAT 57.912 34.615 8.30 0.00 39.61 1.98
546 560 8.203485 AGAACTGACAGGAAGAATGATTCTATC 58.797 37.037 8.30 8.17 39.61 2.08
547 561 7.673641 ACTGACAGGAAGAATGATTCTATCT 57.326 36.000 8.30 6.28 39.61 1.98
548 562 8.088463 ACTGACAGGAAGAATGATTCTATCTT 57.912 34.615 8.30 2.72 39.61 2.40
549 563 8.203485 ACTGACAGGAAGAATGATTCTATCTTC 58.797 37.037 8.30 16.92 45.26 2.87
557 571 8.961294 AAGAATGATTCTATCTTCCTGAAGTG 57.039 34.615 8.30 0.37 39.61 3.16
558 572 6.991531 AGAATGATTCTATCTTCCTGAAGTGC 59.008 38.462 5.78 0.00 38.49 4.40
559 573 5.028549 TGATTCTATCTTCCTGAAGTGCC 57.971 43.478 6.78 0.00 39.38 5.01
560 574 4.471025 TGATTCTATCTTCCTGAAGTGCCA 59.529 41.667 6.78 0.00 39.38 4.92
562 576 3.445008 TCTATCTTCCTGAAGTGCCACT 58.555 45.455 6.78 0.00 39.38 4.00
563 577 4.610333 TCTATCTTCCTGAAGTGCCACTA 58.390 43.478 0.00 0.00 39.38 2.74
564 578 3.902881 ATCTTCCTGAAGTGCCACTAG 57.097 47.619 0.00 0.00 39.38 2.57
565 579 2.889512 TCTTCCTGAAGTGCCACTAGA 58.110 47.619 0.00 0.00 39.38 2.43
566 580 2.828520 TCTTCCTGAAGTGCCACTAGAG 59.171 50.000 0.00 0.00 39.38 2.43
567 581 1.561643 TCCTGAAGTGCCACTAGAGG 58.438 55.000 13.56 13.56 31.30 3.69
569 583 2.114616 CCTGAAGTGCCACTAGAGGAT 58.885 52.381 14.29 0.00 31.55 3.24
585 599 0.039618 GGATCTTCCTTGGGTTGGCA 59.960 55.000 0.00 0.00 32.53 4.92
586 600 1.342374 GGATCTTCCTTGGGTTGGCAT 60.342 52.381 0.00 0.00 32.53 4.40
587 601 2.091885 GGATCTTCCTTGGGTTGGCATA 60.092 50.000 0.00 0.00 32.53 3.14
589 603 1.992557 TCTTCCTTGGGTTGGCATAGT 59.007 47.619 0.00 0.00 0.00 2.12
592 606 1.376609 CCTTGGGTTGGCATAGTCGC 61.377 60.000 0.00 0.00 0.00 5.19
600 614 3.827634 GCATAGTCGCCCCCTTTG 58.172 61.111 0.00 0.00 0.00 2.77
601 615 1.077716 GCATAGTCGCCCCCTTTGT 60.078 57.895 0.00 0.00 0.00 2.83
603 617 0.463833 CATAGTCGCCCCCTTTGTCC 60.464 60.000 0.00 0.00 0.00 4.02
604 618 0.620700 ATAGTCGCCCCCTTTGTCCT 60.621 55.000 0.00 0.00 0.00 3.85
606 620 3.327404 TCGCCCCCTTTGTCCTCC 61.327 66.667 0.00 0.00 0.00 4.30
607 621 3.330720 CGCCCCCTTTGTCCTCCT 61.331 66.667 0.00 0.00 0.00 3.69
608 622 2.677848 GCCCCCTTTGTCCTCCTC 59.322 66.667 0.00 0.00 0.00 3.71
610 624 2.670148 CCCCCTTTGTCCTCCTCGG 61.670 68.421 0.00 0.00 0.00 4.63
611 625 2.670148 CCCCTTTGTCCTCCTCGGG 61.670 68.421 0.00 0.00 0.00 5.14
612 626 1.918800 CCCTTTGTCCTCCTCGGGT 60.919 63.158 0.00 0.00 0.00 5.28
613 627 1.489560 CCCTTTGTCCTCCTCGGGTT 61.490 60.000 0.00 0.00 0.00 4.11
615 629 0.321653 CTTTGTCCTCCTCGGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
616 630 2.406002 TTTGTCCTCCTCGGGTTGGC 62.406 60.000 0.00 0.00 0.00 4.52
617 631 3.319198 GTCCTCCTCGGGTTGGCA 61.319 66.667 0.00 0.00 0.00 4.92
618 632 2.285368 TCCTCCTCGGGTTGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
621 635 1.338136 CCTCCTCGGGTTGGCATAGT 61.338 60.000 0.00 0.00 0.00 2.12
622 636 0.105039 CTCCTCGGGTTGGCATAGTC 59.895 60.000 0.00 0.00 0.00 2.59
623 637 0.616395 TCCTCGGGTTGGCATAGTCA 60.616 55.000 0.00 0.00 0.00 3.41
625 639 0.462047 CTCGGGTTGGCATAGTCACC 60.462 60.000 0.00 0.00 0.00 4.02
626 640 1.451387 CGGGTTGGCATAGTCACCC 60.451 63.158 13.35 13.35 0.00 4.61
627 641 1.076995 GGGTTGGCATAGTCACCCC 60.077 63.158 12.49 0.00 0.00 4.95
628 642 1.688811 GGTTGGCATAGTCACCCCA 59.311 57.895 0.00 0.00 0.00 4.96
629 643 0.258774 GGTTGGCATAGTCACCCCAT 59.741 55.000 0.00 0.00 0.00 4.00
630 644 1.341976 GGTTGGCATAGTCACCCCATT 60.342 52.381 0.00 0.00 0.00 3.16
631 645 2.456577 GTTGGCATAGTCACCCCATTT 58.543 47.619 0.00 0.00 0.00 2.32
635 649 1.402787 CATAGTCACCCCATTTGCCC 58.597 55.000 0.00 0.00 0.00 5.36
636 650 1.006813 ATAGTCACCCCATTTGCCCA 58.993 50.000 0.00 0.00 0.00 5.36
637 651 0.780637 TAGTCACCCCATTTGCCCAA 59.219 50.000 0.00 0.00 0.00 4.12
641 655 3.008517 CCCCATTTGCCCAACCCC 61.009 66.667 0.00 0.00 0.00 4.95
642 656 2.203907 CCCATTTGCCCAACCCCA 60.204 61.111 0.00 0.00 0.00 4.96
644 658 1.840650 CCATTTGCCCAACCCCACA 60.841 57.895 0.00 0.00 0.00 4.17
645 659 1.414061 CCATTTGCCCAACCCCACAA 61.414 55.000 0.00 0.00 0.00 3.33
646 660 0.035176 CATTTGCCCAACCCCACAAG 59.965 55.000 0.00 0.00 0.00 3.16
649 663 1.656092 TTGCCCAACCCCACAAGGTA 61.656 55.000 0.00 0.00 40.05 3.08
650 664 1.386550 GCCCAACCCCACAAGGTAT 59.613 57.895 0.00 0.00 40.05 2.73
651 665 0.252057 GCCCAACCCCACAAGGTATT 60.252 55.000 0.00 0.00 40.05 1.89
652 666 1.847328 CCCAACCCCACAAGGTATTC 58.153 55.000 0.00 0.00 40.05 1.75
653 667 1.076350 CCCAACCCCACAAGGTATTCA 59.924 52.381 0.00 0.00 40.05 2.57
654 668 2.491825 CCCAACCCCACAAGGTATTCAA 60.492 50.000 0.00 0.00 40.05 2.69
655 669 2.560981 CCAACCCCACAAGGTATTCAAC 59.439 50.000 0.00 0.00 40.05 3.18
656 670 3.496331 CAACCCCACAAGGTATTCAACT 58.504 45.455 0.00 0.00 40.05 3.16
661 3925 3.081804 CCACAAGGTATTCAACTCCCAC 58.918 50.000 0.00 0.00 0.00 4.61
688 3952 3.764466 CGGCTTGCTCCTCTCGGT 61.764 66.667 0.00 0.00 0.00 4.69
814 4084 0.029474 ATATCCCCTTGAACCCCCGA 60.029 55.000 0.00 0.00 0.00 5.14
857 4127 6.428159 GGATATGCATAACTAGTTCCACTTGG 59.572 42.308 12.39 0.00 0.00 3.61
896 4166 3.170991 AGTCCTATATAAGCGCCTCCA 57.829 47.619 2.29 0.00 0.00 3.86
898 4168 4.868268 AGTCCTATATAAGCGCCTCCATA 58.132 43.478 2.29 0.00 0.00 2.74
900 4170 3.630769 TCCTATATAAGCGCCTCCATACG 59.369 47.826 2.29 0.00 0.00 3.06
931 4201 1.002087 AGTTCAAGCTCAGTTACCCCG 59.998 52.381 0.00 0.00 0.00 5.73
954 4224 1.850377 CTCGCTCAGCAACTATCAGG 58.150 55.000 0.00 0.00 0.00 3.86
1020 4290 4.101448 GCGACCCTGTGGAGGCAT 62.101 66.667 0.00 0.00 38.17 4.40
1056 4326 2.739132 GTCAAGGTCGTCCGGGTT 59.261 61.111 0.00 0.00 39.05 4.11
1059 4329 3.239253 AAGGTCGTCCGGGTTGCT 61.239 61.111 0.00 0.00 39.05 3.91
1111 4381 0.036732 TGTGAGGTACTACGTCCCGT 59.963 55.000 0.00 0.00 41.55 5.28
1116 4386 1.745489 GTACTACGTCCCGTCCGGT 60.745 63.158 0.00 0.00 41.54 5.28
1120 4390 3.841137 TACGTCCCGTCCGGTGACA 62.841 63.158 19.92 6.01 41.85 3.58
1458 4734 4.090057 GCGCCCAAGTTGCTCGTC 62.090 66.667 0.00 5.69 0.00 4.20
1479 4755 2.338984 GTCAAGGTCGTCCACGCT 59.661 61.111 0.51 0.00 39.60 5.07
1600 4876 1.187087 GACCGAGGAGGACATGTTCT 58.813 55.000 6.28 6.28 45.00 3.01
1602 4878 1.276421 ACCGAGGAGGACATGTTCTTG 59.724 52.381 8.41 4.25 45.00 3.02
1641 4917 5.130477 TCAATAGGAGTACCCCAAGATTGTC 59.870 44.000 12.40 0.00 36.73 3.18
1665 4941 3.245016 TGGTAGGTGAACTTCGTAGGAGA 60.245 47.826 0.00 0.00 0.00 3.71
1666 4942 3.377798 GGTAGGTGAACTTCGTAGGAGAG 59.622 52.174 0.00 0.00 0.00 3.20
1667 4943 1.819903 AGGTGAACTTCGTAGGAGAGC 59.180 52.381 0.00 0.00 0.00 4.09
1668 4944 1.819903 GGTGAACTTCGTAGGAGAGCT 59.180 52.381 0.00 0.00 0.00 4.09
1669 4945 2.159352 GGTGAACTTCGTAGGAGAGCTC 60.159 54.545 5.27 5.27 0.00 4.09
1670 4946 2.750712 GTGAACTTCGTAGGAGAGCTCT 59.249 50.000 18.28 18.28 0.00 4.09
1671 4947 3.191791 GTGAACTTCGTAGGAGAGCTCTT 59.808 47.826 19.36 5.29 0.00 2.85
1672 4948 3.440872 TGAACTTCGTAGGAGAGCTCTTC 59.559 47.826 19.36 17.05 0.00 2.87
1673 4949 2.371306 ACTTCGTAGGAGAGCTCTTCC 58.629 52.381 19.36 19.17 0.00 3.46
1674 4950 2.291024 ACTTCGTAGGAGAGCTCTTCCA 60.291 50.000 24.96 10.10 0.00 3.53
1675 4951 2.045561 TCGTAGGAGAGCTCTTCCAG 57.954 55.000 24.96 15.48 0.00 3.86
1686 4962 1.602311 CTCTTCCAGCAAGCAGTTGT 58.398 50.000 0.00 0.00 35.92 3.32
1687 4963 1.534595 CTCTTCCAGCAAGCAGTTGTC 59.465 52.381 0.00 0.00 35.92 3.18
1688 4964 0.236711 CTTCCAGCAAGCAGTTGTCG 59.763 55.000 0.00 0.00 35.92 4.35
1689 4965 0.179059 TTCCAGCAAGCAGTTGTCGA 60.179 50.000 0.00 0.00 35.92 4.20
1690 4966 0.035317 TCCAGCAAGCAGTTGTCGAT 59.965 50.000 0.00 0.00 35.92 3.59
1691 4967 0.877071 CCAGCAAGCAGTTGTCGATT 59.123 50.000 0.00 0.00 35.92 3.34
1692 4968 1.267806 CCAGCAAGCAGTTGTCGATTT 59.732 47.619 0.00 0.00 35.92 2.17
1693 4969 2.578495 CAGCAAGCAGTTGTCGATTTC 58.422 47.619 0.00 0.00 35.92 2.17
1694 4970 2.031769 CAGCAAGCAGTTGTCGATTTCA 60.032 45.455 0.00 0.00 35.92 2.69
1695 4971 2.225019 AGCAAGCAGTTGTCGATTTCAG 59.775 45.455 0.00 0.00 35.92 3.02
1696 4972 2.031682 GCAAGCAGTTGTCGATTTCAGT 60.032 45.455 0.00 0.00 35.92 3.41
1697 4973 3.803555 CAAGCAGTTGTCGATTTCAGTC 58.196 45.455 0.00 0.00 0.00 3.51
1698 4974 3.111853 AGCAGTTGTCGATTTCAGTCA 57.888 42.857 0.00 0.00 0.00 3.41
1699 4975 3.466836 AGCAGTTGTCGATTTCAGTCAA 58.533 40.909 0.00 0.00 0.00 3.18
1700 4976 3.876914 AGCAGTTGTCGATTTCAGTCAAA 59.123 39.130 0.00 0.00 0.00 2.69
1701 4977 3.968724 GCAGTTGTCGATTTCAGTCAAAC 59.031 43.478 0.00 0.00 0.00 2.93
1702 4978 4.260784 GCAGTTGTCGATTTCAGTCAAACT 60.261 41.667 0.00 0.00 0.00 2.66
1703 4979 5.435557 CAGTTGTCGATTTCAGTCAAACTC 58.564 41.667 0.00 0.00 0.00 3.01
1704 4980 5.235186 CAGTTGTCGATTTCAGTCAAACTCT 59.765 40.000 0.00 0.00 0.00 3.24
1705 4981 6.420903 CAGTTGTCGATTTCAGTCAAACTCTA 59.579 38.462 0.00 0.00 0.00 2.43
1706 4982 6.421202 AGTTGTCGATTTCAGTCAAACTCTAC 59.579 38.462 0.00 0.00 0.00 2.59
1707 4983 6.085555 TGTCGATTTCAGTCAAACTCTACT 57.914 37.500 0.00 0.00 0.00 2.57
1708 4984 6.150318 TGTCGATTTCAGTCAAACTCTACTC 58.850 40.000 0.00 0.00 0.00 2.59
1709 4985 5.284188 GTCGATTTCAGTCAAACTCTACTCG 59.716 44.000 0.00 0.00 0.00 4.18
1710 4986 4.559251 CGATTTCAGTCAAACTCTACTCGG 59.441 45.833 0.00 0.00 0.00 4.63
1711 4987 3.936372 TTCAGTCAAACTCTACTCGGG 57.064 47.619 0.00 0.00 0.00 5.14
1712 4988 1.544691 TCAGTCAAACTCTACTCGGGC 59.455 52.381 0.00 0.00 0.00 6.13
1713 4989 0.526662 AGTCAAACTCTACTCGGGCG 59.473 55.000 0.00 0.00 0.00 6.13
1714 4990 0.243095 GTCAAACTCTACTCGGGCGT 59.757 55.000 0.00 0.00 0.00 5.68
1715 4991 0.242825 TCAAACTCTACTCGGGCGTG 59.757 55.000 0.00 0.00 0.00 5.34
1716 4992 0.242825 CAAACTCTACTCGGGCGTGA 59.757 55.000 0.00 0.00 0.00 4.35
1717 4993 0.963962 AAACTCTACTCGGGCGTGAA 59.036 50.000 0.00 0.00 0.00 3.18
1718 4994 0.963962 AACTCTACTCGGGCGTGAAA 59.036 50.000 0.00 0.00 0.00 2.69
1719 4995 1.183549 ACTCTACTCGGGCGTGAAAT 58.816 50.000 0.00 0.00 0.00 2.17
1720 4996 2.372264 ACTCTACTCGGGCGTGAAATA 58.628 47.619 0.00 0.00 0.00 1.40
1721 4997 2.957006 ACTCTACTCGGGCGTGAAATAT 59.043 45.455 0.00 0.00 0.00 1.28
1722 4998 3.243434 ACTCTACTCGGGCGTGAAATATG 60.243 47.826 0.00 0.00 0.00 1.78
1723 4999 2.953648 TCTACTCGGGCGTGAAATATGA 59.046 45.455 0.00 0.00 0.00 2.15
1724 5000 2.684001 ACTCGGGCGTGAAATATGAA 57.316 45.000 0.00 0.00 0.00 2.57
1725 5001 2.277084 ACTCGGGCGTGAAATATGAAC 58.723 47.619 0.00 0.00 0.00 3.18
1726 5002 2.276201 CTCGGGCGTGAAATATGAACA 58.724 47.619 0.00 0.00 0.00 3.18
1727 5003 2.675844 CTCGGGCGTGAAATATGAACAA 59.324 45.455 0.00 0.00 0.00 2.83
1728 5004 3.075148 TCGGGCGTGAAATATGAACAAA 58.925 40.909 0.00 0.00 0.00 2.83
1729 5005 3.692101 TCGGGCGTGAAATATGAACAAAT 59.308 39.130 0.00 0.00 0.00 2.32
1730 5006 4.156922 TCGGGCGTGAAATATGAACAAATT 59.843 37.500 0.00 0.00 0.00 1.82
1731 5007 4.862018 CGGGCGTGAAATATGAACAAATTT 59.138 37.500 0.00 0.00 0.00 1.82
1732 5008 5.347364 CGGGCGTGAAATATGAACAAATTTT 59.653 36.000 0.00 0.00 0.00 1.82
1733 5009 6.533185 GGGCGTGAAATATGAACAAATTTTG 58.467 36.000 7.59 7.59 0.00 2.44
1734 5010 6.367422 GGGCGTGAAATATGAACAAATTTTGA 59.633 34.615 15.81 0.00 0.00 2.69
1735 5011 7.095439 GGGCGTGAAATATGAACAAATTTTGAA 60.095 33.333 15.81 1.87 0.00 2.69
1736 5012 7.739911 GGCGTGAAATATGAACAAATTTTGAAC 59.260 33.333 15.81 9.13 0.00 3.18
1737 5013 8.272176 GCGTGAAATATGAACAAATTTTGAACA 58.728 29.630 15.81 13.73 0.00 3.18
1755 5031 9.725019 TTTTGAACAAGATATCTAGCTTTCTGA 57.275 29.630 5.46 0.00 27.90 3.27
1756 5032 9.725019 TTTGAACAAGATATCTAGCTTTCTGAA 57.275 29.630 5.46 4.12 27.90 3.02
1757 5033 9.725019 TTGAACAAGATATCTAGCTTTCTGAAA 57.275 29.630 5.46 2.44 27.90 2.69
1758 5034 9.376075 TGAACAAGATATCTAGCTTTCTGAAAG 57.624 33.333 22.62 22.62 41.46 2.62
1773 5049 3.624326 TGAAAGCATCAGTCGGTTTTG 57.376 42.857 0.00 0.00 34.41 2.44
1774 5050 2.293122 TGAAAGCATCAGTCGGTTTTGG 59.707 45.455 0.00 0.00 34.41 3.28
1775 5051 1.981256 AAGCATCAGTCGGTTTTGGT 58.019 45.000 0.00 0.00 0.00 3.67
1776 5052 1.238439 AGCATCAGTCGGTTTTGGTG 58.762 50.000 0.00 0.00 0.00 4.17
1777 5053 0.951558 GCATCAGTCGGTTTTGGTGT 59.048 50.000 0.00 0.00 0.00 4.16
1778 5054 1.336755 GCATCAGTCGGTTTTGGTGTT 59.663 47.619 0.00 0.00 0.00 3.32
1779 5055 2.223711 GCATCAGTCGGTTTTGGTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
1780 5056 3.736740 GCATCAGTCGGTTTTGGTGTTTT 60.737 43.478 0.00 0.00 0.00 2.43
1781 5057 4.429108 CATCAGTCGGTTTTGGTGTTTTT 58.571 39.130 0.00 0.00 0.00 1.94
1782 5058 3.839293 TCAGTCGGTTTTGGTGTTTTTG 58.161 40.909 0.00 0.00 0.00 2.44
1783 5059 3.506455 TCAGTCGGTTTTGGTGTTTTTGA 59.494 39.130 0.00 0.00 0.00 2.69
1784 5060 3.857093 CAGTCGGTTTTGGTGTTTTTGAG 59.143 43.478 0.00 0.00 0.00 3.02
1785 5061 2.601314 GTCGGTTTTGGTGTTTTTGAGC 59.399 45.455 0.00 0.00 0.00 4.26
1786 5062 2.494073 TCGGTTTTGGTGTTTTTGAGCT 59.506 40.909 0.00 0.00 0.00 4.09
1787 5063 3.056465 TCGGTTTTGGTGTTTTTGAGCTT 60.056 39.130 0.00 0.00 0.00 3.74
1788 5064 3.305897 CGGTTTTGGTGTTTTTGAGCTTC 59.694 43.478 0.00 0.00 0.00 3.86
1789 5065 3.621268 GGTTTTGGTGTTTTTGAGCTTCC 59.379 43.478 0.00 0.00 0.00 3.46
1790 5066 4.503910 GTTTTGGTGTTTTTGAGCTTCCT 58.496 39.130 0.00 0.00 0.00 3.36
1791 5067 4.385358 TTTGGTGTTTTTGAGCTTCCTC 57.615 40.909 0.00 0.00 38.62 3.71
1792 5068 1.946768 TGGTGTTTTTGAGCTTCCTCG 59.053 47.619 0.00 0.00 41.13 4.63
1793 5069 1.947456 GGTGTTTTTGAGCTTCCTCGT 59.053 47.619 0.00 0.00 41.13 4.18
1794 5070 2.031944 GGTGTTTTTGAGCTTCCTCGTC 60.032 50.000 0.00 0.00 41.13 4.20
1795 5071 1.864711 TGTTTTTGAGCTTCCTCGTCG 59.135 47.619 0.00 0.00 41.13 5.12
1796 5072 0.865769 TTTTTGAGCTTCCTCGTCGC 59.134 50.000 0.00 0.00 41.13 5.19
1797 5073 0.949105 TTTTGAGCTTCCTCGTCGCC 60.949 55.000 0.00 0.00 41.13 5.54
1798 5074 2.781595 TTTGAGCTTCCTCGTCGCCC 62.782 60.000 0.00 0.00 41.13 6.13
1799 5075 3.453679 GAGCTTCCTCGTCGCCCT 61.454 66.667 0.00 0.00 0.00 5.19
1800 5076 2.997897 AGCTTCCTCGTCGCCCTT 60.998 61.111 0.00 0.00 0.00 3.95
1801 5077 2.815647 GCTTCCTCGTCGCCCTTG 60.816 66.667 0.00 0.00 0.00 3.61
1802 5078 2.125512 CTTCCTCGTCGCCCTTGG 60.126 66.667 0.00 0.00 0.00 3.61
1803 5079 2.602267 TTCCTCGTCGCCCTTGGA 60.602 61.111 0.00 0.00 0.00 3.53
1804 5080 1.961180 CTTCCTCGTCGCCCTTGGAT 61.961 60.000 0.00 0.00 0.00 3.41
1805 5081 2.202932 CCTCGTCGCCCTTGGATG 60.203 66.667 0.00 0.00 0.00 3.51
1806 5082 2.579201 CTCGTCGCCCTTGGATGT 59.421 61.111 0.00 0.00 0.00 3.06
1807 5083 1.811266 CTCGTCGCCCTTGGATGTG 60.811 63.158 0.00 0.00 0.00 3.21
1808 5084 2.047274 CGTCGCCCTTGGATGTGT 60.047 61.111 0.00 0.00 0.00 3.72
1809 5085 2.390599 CGTCGCCCTTGGATGTGTG 61.391 63.158 0.00 0.00 0.00 3.82
1810 5086 2.040544 GTCGCCCTTGGATGTGTGG 61.041 63.158 0.00 0.00 0.00 4.17
1811 5087 3.443045 CGCCCTTGGATGTGTGGC 61.443 66.667 0.00 0.00 38.74 5.01
1812 5088 2.036256 GCCCTTGGATGTGTGGCT 59.964 61.111 0.00 0.00 39.05 4.75
1813 5089 2.345760 GCCCTTGGATGTGTGGCTG 61.346 63.158 0.00 0.00 39.05 4.85
1814 5090 2.345760 CCCTTGGATGTGTGGCTGC 61.346 63.158 0.00 0.00 0.00 5.25
1815 5091 2.345760 CCTTGGATGTGTGGCTGCC 61.346 63.158 12.87 12.87 0.00 4.85
1816 5092 1.604308 CTTGGATGTGTGGCTGCCA 60.604 57.895 19.30 19.30 0.00 4.92
1817 5093 0.968901 CTTGGATGTGTGGCTGCCAT 60.969 55.000 26.22 8.69 35.28 4.40
1818 5094 1.252215 TTGGATGTGTGGCTGCCATG 61.252 55.000 26.22 0.00 35.28 3.66
1819 5095 2.493030 GATGTGTGGCTGCCATGC 59.507 61.111 26.22 19.88 35.28 4.06
1820 5096 2.283316 ATGTGTGGCTGCCATGCA 60.283 55.556 26.22 24.55 35.28 3.96
1821 5097 2.552585 GATGTGTGGCTGCCATGCAC 62.553 60.000 26.72 26.72 35.28 4.57
1822 5098 4.409218 GTGTGGCTGCCATGCACG 62.409 66.667 26.22 0.00 35.28 5.34
1823 5099 4.953010 TGTGGCTGCCATGCACGT 62.953 61.111 26.22 0.00 35.28 4.49
1824 5100 4.107051 GTGGCTGCCATGCACGTC 62.107 66.667 26.22 6.01 35.28 4.34
1825 5101 4.639906 TGGCTGCCATGCACGTCA 62.640 61.111 19.30 0.00 33.79 4.35
1826 5102 4.107051 GGCTGCCATGCACGTCAC 62.107 66.667 15.17 0.00 33.79 3.67
1827 5103 4.450122 GCTGCCATGCACGTCACG 62.450 66.667 0.00 0.00 33.79 4.35
1828 5104 3.043713 CTGCCATGCACGTCACGT 61.044 61.111 0.00 0.00 42.36 4.49
1837 5113 4.021650 ACGTCACGTGCAAACGAT 57.978 50.000 28.16 13.79 39.18 3.73
1838 5114 2.303452 ACGTCACGTGCAAACGATT 58.697 47.368 28.16 9.72 39.18 3.34
1839 5115 1.489574 ACGTCACGTGCAAACGATTA 58.510 45.000 28.16 0.00 39.18 1.75
1840 5116 2.063266 ACGTCACGTGCAAACGATTAT 58.937 42.857 28.16 8.78 39.18 1.28
1841 5117 2.477375 ACGTCACGTGCAAACGATTATT 59.523 40.909 28.16 8.46 39.18 1.40
1842 5118 3.081445 CGTCACGTGCAAACGATTATTC 58.919 45.455 19.95 0.00 38.65 1.75
1843 5119 3.181534 CGTCACGTGCAAACGATTATTCT 60.182 43.478 19.95 0.00 38.65 2.40
1844 5120 4.665645 CGTCACGTGCAAACGATTATTCTT 60.666 41.667 19.95 0.00 38.65 2.52
1845 5121 4.781528 GTCACGTGCAAACGATTATTCTTC 59.218 41.667 11.67 0.00 36.85 2.87
1846 5122 4.088648 CACGTGCAAACGATTATTCTTCC 58.911 43.478 0.82 0.00 36.85 3.46
1847 5123 3.181524 ACGTGCAAACGATTATTCTTCCG 60.182 43.478 5.12 0.00 36.85 4.30
1848 5124 3.181524 CGTGCAAACGATTATTCTTCCGT 60.182 43.478 0.00 0.00 36.77 4.69
1849 5125 4.331962 GTGCAAACGATTATTCTTCCGTC 58.668 43.478 0.00 0.00 33.84 4.79
1850 5126 4.092968 GTGCAAACGATTATTCTTCCGTCT 59.907 41.667 0.00 0.00 33.84 4.18
1851 5127 4.092821 TGCAAACGATTATTCTTCCGTCTG 59.907 41.667 0.00 0.00 33.84 3.51
1852 5128 4.578601 CAAACGATTATTCTTCCGTCTGC 58.421 43.478 0.00 0.00 33.84 4.26
1853 5129 2.822764 ACGATTATTCTTCCGTCTGCC 58.177 47.619 0.00 0.00 0.00 4.85
1854 5130 2.135933 CGATTATTCTTCCGTCTGCCC 58.864 52.381 0.00 0.00 0.00 5.36
1855 5131 2.135933 GATTATTCTTCCGTCTGCCCG 58.864 52.381 0.00 0.00 0.00 6.13
1873 5149 4.374702 GCGGCTCTGCGTTGTGTG 62.375 66.667 0.00 0.00 0.00 3.82
1874 5150 4.374702 CGGCTCTGCGTTGTGTGC 62.375 66.667 0.00 0.00 0.00 4.57
1875 5151 3.279116 GGCTCTGCGTTGTGTGCA 61.279 61.111 0.00 0.00 40.70 4.57
1876 5152 2.051882 GCTCTGCGTTGTGTGCAC 60.052 61.111 10.75 10.75 37.44 4.57
1877 5153 2.822758 GCTCTGCGTTGTGTGCACA 61.823 57.895 17.42 17.42 37.44 4.57
1878 5154 1.944035 CTCTGCGTTGTGTGCACAT 59.056 52.632 24.69 0.00 41.52 3.21
1879 5155 0.110509 CTCTGCGTTGTGTGCACATC 60.111 55.000 24.69 16.67 41.52 3.06
1882 5158 3.636458 CGTTGTGTGCACATCGGA 58.364 55.556 24.69 6.56 45.51 4.55
1883 5159 1.492873 CGTTGTGTGCACATCGGAG 59.507 57.895 24.69 10.13 45.51 4.63
1884 5160 0.943835 CGTTGTGTGCACATCGGAGA 60.944 55.000 24.69 2.82 45.51 3.71
1885 5161 0.512952 GTTGTGTGCACATCGGAGAC 59.487 55.000 24.69 8.68 42.51 3.36
1886 5162 0.943835 TTGTGTGCACATCGGAGACG 60.944 55.000 24.69 0.00 46.58 4.18
1909 5185 4.093952 CGCAGCGGTGAAGCTTGG 62.094 66.667 20.69 0.00 46.80 3.61
1910 5186 3.741476 GCAGCGGTGAAGCTTGGG 61.741 66.667 20.69 0.00 46.80 4.12
1911 5187 3.058160 CAGCGGTGAAGCTTGGGG 61.058 66.667 9.50 0.00 46.80 4.96
1912 5188 4.351054 AGCGGTGAAGCTTGGGGG 62.351 66.667 2.10 0.00 46.80 5.40
1927 5203 3.507675 GGGGGAAATTAAGACGGGG 57.492 57.895 0.00 0.00 0.00 5.73
1933 5209 3.562826 GGGAAATTAAGACGGGGTCCTTT 60.563 47.826 0.00 0.00 32.18 3.11
1934 5210 4.084287 GGAAATTAAGACGGGGTCCTTTT 58.916 43.478 0.00 0.00 32.18 2.27
1958 5238 4.899457 TGTTAGAAGAGAGAGGTTTGGTGA 59.101 41.667 0.00 0.00 0.00 4.02
1963 5243 7.264294 AGAAGAGAGAGGTTTGGTGAAATAT 57.736 36.000 0.00 0.00 0.00 1.28
1964 5244 7.108847 AGAAGAGAGAGGTTTGGTGAAATATG 58.891 38.462 0.00 0.00 0.00 1.78
1968 5254 6.125029 AGAGAGGTTTGGTGAAATATGATGG 58.875 40.000 0.00 0.00 0.00 3.51
1981 5267 1.700955 ATGATGGATTGCTTGAGCCC 58.299 50.000 0.00 0.00 41.18 5.19
2012 5298 9.900710 GGCATATATATAGGAGTACAAAGATCG 57.099 37.037 8.56 0.00 0.00 3.69
2113 5400 0.523072 TAGTCACAACGGTAGCGACC 59.477 55.000 22.88 5.82 43.03 4.79
2261 5551 0.041312 CCTTTGTGCCGTTTGTCGAG 60.041 55.000 0.00 0.00 42.86 4.04
2368 5658 1.375396 CAAGGATGTCGCCGTGGAA 60.375 57.895 0.00 0.00 34.34 3.53
2484 5775 3.991318 TTTGCCAAGCCCGGGGAT 61.991 61.111 25.28 8.03 0.00 3.85
2541 5832 2.185867 GGGCATGCGTAGACGGAA 59.814 61.111 12.44 0.00 44.19 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.892334 CTTGGCGACACGGTGTTGG 61.892 63.158 25.66 16.96 42.67 3.77
10 11 2.590575 CCTTGGCGACACGGTGTT 60.591 61.111 15.94 0.00 44.43 3.32
136 149 1.352156 GAGTTCGACCACGCCATCAC 61.352 60.000 0.00 0.00 39.58 3.06
156 169 2.028925 GCACACAAAAAGGGGCGG 59.971 61.111 0.00 0.00 0.00 6.13
161 174 3.255725 CATATGCCAGCACACAAAAAGG 58.744 45.455 0.00 0.00 0.00 3.11
215 229 7.944729 ATGTCAGCTTTAGAAAATACCACAT 57.055 32.000 0.00 0.00 0.00 3.21
220 234 9.226345 GCATACAATGTCAGCTTTAGAAAATAC 57.774 33.333 0.00 0.00 0.00 1.89
236 250 2.124736 AGCGCCGGCATACAATGT 60.125 55.556 28.98 0.00 43.41 2.71
263 277 3.051392 GCCCGAAAGTTCATGCCGG 62.051 63.158 0.00 0.00 39.85 6.13
295 309 0.388659 GCGGCCATAATTCATGCCAA 59.611 50.000 2.24 0.00 33.09 4.52
302 316 0.818040 AAGGTCCGCGGCCATAATTC 60.818 55.000 31.19 5.64 0.00 2.17
305 319 0.609681 AAAAAGGTCCGCGGCCATAA 60.610 50.000 31.19 10.22 0.00 1.90
336 350 2.032030 CCGACCCATTTCATATTCGCAC 60.032 50.000 0.00 0.00 0.00 5.34
337 351 2.217750 CCGACCCATTTCATATTCGCA 58.782 47.619 0.00 0.00 0.00 5.10
338 352 1.069227 GCCGACCCATTTCATATTCGC 60.069 52.381 0.00 0.00 0.00 4.70
341 355 0.951558 GCGCCGACCCATTTCATATT 59.048 50.000 0.00 0.00 0.00 1.28
343 357 1.885388 CGCGCCGACCCATTTCATA 60.885 57.895 0.00 0.00 0.00 2.15
382 396 1.475034 GCGTCTGCCCCATTTGAGATA 60.475 52.381 0.00 0.00 33.98 1.98
413 427 4.106909 GTTTTTCGTTCATTTGGTTCGGT 58.893 39.130 0.00 0.00 0.00 4.69
418 432 4.577834 ATCCGTTTTTCGTTCATTTGGT 57.422 36.364 0.00 0.00 37.94 3.67
423 437 5.115923 GCGTTTTTATCCGTTTTTCGTTCAT 59.884 36.000 0.00 0.00 37.94 2.57
426 440 3.730215 GGCGTTTTTATCCGTTTTTCGTT 59.270 39.130 0.00 0.00 37.94 3.85
428 442 2.336189 CGGCGTTTTTATCCGTTTTTCG 59.664 45.455 0.00 0.00 38.47 3.46
436 450 0.798159 AACGGACGGCGTTTTTATCC 59.202 50.000 16.19 8.73 0.00 2.59
439 453 0.307146 CCAAACGGACGGCGTTTTTA 59.693 50.000 16.19 0.00 37.45 1.52
459 473 0.034896 AGCAACTCCAACGTTCCGAT 59.965 50.000 0.00 0.00 0.00 4.18
464 478 2.132762 CGTTAGAGCAACTCCAACGTT 58.867 47.619 16.58 0.00 45.29 3.99
465 479 1.779569 CGTTAGAGCAACTCCAACGT 58.220 50.000 16.58 0.00 45.29 3.99
481 495 2.762459 TAGCCGAGCATCCCCGTT 60.762 61.111 0.00 0.00 0.00 4.44
491 505 1.877367 GTCCCGCTATCTAGCCGAG 59.123 63.158 3.71 0.00 46.34 4.63
492 506 1.964891 CGTCCCGCTATCTAGCCGA 60.965 63.158 3.71 0.00 46.34 5.54
493 507 2.561885 CGTCCCGCTATCTAGCCG 59.438 66.667 3.71 0.00 46.34 5.52
494 508 1.461911 AACCGTCCCGCTATCTAGCC 61.462 60.000 3.71 0.00 46.34 3.93
495 509 0.039346 GAACCGTCCCGCTATCTAGC 60.039 60.000 0.00 0.00 45.62 3.42
496 510 1.001597 GTGAACCGTCCCGCTATCTAG 60.002 57.143 0.00 0.00 0.00 2.43
497 511 1.027357 GTGAACCGTCCCGCTATCTA 58.973 55.000 0.00 0.00 0.00 1.98
498 512 1.673808 GGTGAACCGTCCCGCTATCT 61.674 60.000 0.00 0.00 0.00 1.98
499 513 1.227176 GGTGAACCGTCCCGCTATC 60.227 63.158 0.00 0.00 0.00 2.08
500 514 1.684734 AGGTGAACCGTCCCGCTAT 60.685 57.895 0.00 0.00 42.08 2.97
501 515 2.283388 AGGTGAACCGTCCCGCTA 60.283 61.111 0.00 0.00 42.08 4.26
503 517 3.934391 CTCAGGTGAACCGTCCCGC 62.934 68.421 0.00 0.00 42.08 6.13
504 518 1.812686 TTCTCAGGTGAACCGTCCCG 61.813 60.000 0.00 0.00 42.08 5.14
505 519 0.320508 GTTCTCAGGTGAACCGTCCC 60.321 60.000 3.49 0.00 40.10 4.46
507 521 1.340248 TCAGTTCTCAGGTGAACCGTC 59.660 52.381 9.81 0.00 45.25 4.79
508 522 1.068741 GTCAGTTCTCAGGTGAACCGT 59.931 52.381 9.81 0.00 45.25 4.83
511 525 2.760374 CCTGTCAGTTCTCAGGTGAAC 58.240 52.381 6.20 6.20 44.19 3.18
518 532 5.752036 ATCATTCTTCCTGTCAGTTCTCA 57.248 39.130 0.00 0.00 0.00 3.27
519 533 6.405538 AGAATCATTCTTCCTGTCAGTTCTC 58.594 40.000 0.00 0.00 36.36 2.87
520 534 6.371595 AGAATCATTCTTCCTGTCAGTTCT 57.628 37.500 0.00 0.00 36.36 3.01
521 535 8.203485 AGATAGAATCATTCTTCCTGTCAGTTC 58.797 37.037 4.90 0.00 41.14 3.01
522 536 8.088463 AGATAGAATCATTCTTCCTGTCAGTT 57.912 34.615 4.90 0.00 41.14 3.16
523 537 7.673641 AGATAGAATCATTCTTCCTGTCAGT 57.326 36.000 4.90 0.00 41.14 3.41
533 547 6.991531 GCACTTCAGGAAGATAGAATCATTCT 59.008 38.462 15.51 4.98 40.79 2.40
536 550 5.131642 TGGCACTTCAGGAAGATAGAATCAT 59.868 40.000 15.51 0.00 40.79 2.45
537 551 4.471025 TGGCACTTCAGGAAGATAGAATCA 59.529 41.667 15.51 2.23 40.79 2.57
538 552 4.813697 GTGGCACTTCAGGAAGATAGAATC 59.186 45.833 15.51 0.02 40.79 2.52
539 553 4.472833 AGTGGCACTTCAGGAAGATAGAAT 59.527 41.667 15.88 0.00 40.79 2.40
540 554 3.840666 AGTGGCACTTCAGGAAGATAGAA 59.159 43.478 15.88 0.00 40.79 2.10
542 556 3.902881 AGTGGCACTTCAGGAAGATAG 57.097 47.619 15.88 6.35 40.79 2.08
543 557 4.610333 TCTAGTGGCACTTCAGGAAGATA 58.390 43.478 27.24 2.04 40.79 1.98
544 558 3.445008 TCTAGTGGCACTTCAGGAAGAT 58.555 45.455 27.24 0.00 40.79 2.40
545 559 2.828520 CTCTAGTGGCACTTCAGGAAGA 59.171 50.000 27.24 19.06 40.79 2.87
546 560 2.093764 CCTCTAGTGGCACTTCAGGAAG 60.094 54.545 28.42 18.81 43.79 3.46
547 561 1.902508 CCTCTAGTGGCACTTCAGGAA 59.097 52.381 28.42 11.14 30.99 3.36
548 562 1.077169 TCCTCTAGTGGCACTTCAGGA 59.923 52.381 29.83 29.83 34.34 3.86
549 563 1.561643 TCCTCTAGTGGCACTTCAGG 58.438 55.000 27.24 27.25 30.78 3.86
550 564 3.030291 AGATCCTCTAGTGGCACTTCAG 58.970 50.000 27.24 20.08 0.00 3.02
551 565 3.107402 AGATCCTCTAGTGGCACTTCA 57.893 47.619 27.24 11.63 0.00 3.02
554 568 2.023501 AGGAAGATCCTCTAGTGGCACT 60.024 50.000 25.34 25.34 45.66 4.40
555 569 2.393646 AGGAAGATCCTCTAGTGGCAC 58.606 52.381 10.29 10.29 45.66 5.01
556 570 2.856760 AGGAAGATCCTCTAGTGGCA 57.143 50.000 5.93 0.00 45.66 4.92
566 580 0.039618 TGCCAACCCAAGGAAGATCC 59.960 55.000 0.00 0.00 36.58 3.36
567 581 2.149973 ATGCCAACCCAAGGAAGATC 57.850 50.000 0.00 0.00 0.00 2.75
569 583 1.992557 ACTATGCCAACCCAAGGAAGA 59.007 47.619 0.00 0.00 0.00 2.87
572 586 0.251916 CGACTATGCCAACCCAAGGA 59.748 55.000 0.00 0.00 0.00 3.36
573 587 1.376609 GCGACTATGCCAACCCAAGG 61.377 60.000 0.00 0.00 0.00 3.61
575 589 4.312052 GCGACTATGCCAACCCAA 57.688 55.556 0.00 0.00 0.00 4.12
585 599 0.620700 AGGACAAAGGGGGCGACTAT 60.621 55.000 0.00 0.00 0.00 2.12
586 600 1.229400 AGGACAAAGGGGGCGACTA 60.229 57.895 0.00 0.00 0.00 2.59
587 601 2.529389 AGGACAAAGGGGGCGACT 60.529 61.111 0.00 0.00 0.00 4.18
589 603 3.327404 GGAGGACAAAGGGGGCGA 61.327 66.667 0.00 0.00 0.00 5.54
592 606 2.670148 CCGAGGAGGACAAAGGGGG 61.670 68.421 0.00 0.00 45.00 5.40
594 608 1.489560 AACCCGAGGAGGACAAAGGG 61.490 60.000 0.00 0.00 45.00 3.95
597 611 1.758592 CCAACCCGAGGAGGACAAA 59.241 57.895 0.00 0.00 45.00 2.83
598 612 2.890766 GCCAACCCGAGGAGGACAA 61.891 63.158 9.18 0.00 45.00 3.18
599 613 3.319198 GCCAACCCGAGGAGGACA 61.319 66.667 9.18 0.00 45.00 4.02
600 614 1.335132 TATGCCAACCCGAGGAGGAC 61.335 60.000 9.18 3.75 45.00 3.85
601 615 1.002403 TATGCCAACCCGAGGAGGA 59.998 57.895 9.18 0.00 45.00 3.71
603 617 0.105039 GACTATGCCAACCCGAGGAG 59.895 60.000 0.00 0.00 0.00 3.69
604 618 0.616395 TGACTATGCCAACCCGAGGA 60.616 55.000 0.00 0.00 0.00 3.71
606 620 0.462047 GGTGACTATGCCAACCCGAG 60.462 60.000 0.00 0.00 0.00 4.63
607 621 1.600107 GGTGACTATGCCAACCCGA 59.400 57.895 0.00 0.00 0.00 5.14
608 622 1.451387 GGGTGACTATGCCAACCCG 60.451 63.158 0.00 0.00 35.38 5.28
610 624 0.258774 ATGGGGTGACTATGCCAACC 59.741 55.000 0.00 0.00 40.61 3.77
611 625 2.143876 AATGGGGTGACTATGCCAAC 57.856 50.000 0.00 0.00 0.00 3.77
612 626 2.455557 CAAATGGGGTGACTATGCCAA 58.544 47.619 0.00 0.00 0.00 4.52
613 627 1.959508 GCAAATGGGGTGACTATGCCA 60.960 52.381 0.00 0.00 0.00 4.92
615 629 0.746659 GGCAAATGGGGTGACTATGC 59.253 55.000 0.00 0.00 0.00 3.14
616 630 1.341877 TGGGCAAATGGGGTGACTATG 60.342 52.381 0.00 0.00 0.00 2.23
617 631 1.006813 TGGGCAAATGGGGTGACTAT 58.993 50.000 0.00 0.00 0.00 2.12
618 632 0.780637 TTGGGCAAATGGGGTGACTA 59.219 50.000 0.00 0.00 0.00 2.59
621 635 1.535202 GGTTGGGCAAATGGGGTGA 60.535 57.895 0.00 0.00 0.00 4.02
622 636 2.592032 GGGTTGGGCAAATGGGGTG 61.592 63.158 0.00 0.00 0.00 4.61
623 637 2.203922 GGGTTGGGCAAATGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
625 639 2.203907 TGGGGTTGGGCAAATGGG 60.204 61.111 0.00 0.00 0.00 4.00
626 640 1.414061 TTGTGGGGTTGGGCAAATGG 61.414 55.000 0.00 0.00 0.00 3.16
627 641 0.035176 CTTGTGGGGTTGGGCAAATG 59.965 55.000 0.00 0.00 0.00 2.32
628 642 1.126948 CCTTGTGGGGTTGGGCAAAT 61.127 55.000 0.00 0.00 0.00 2.32
629 643 1.764054 CCTTGTGGGGTTGGGCAAA 60.764 57.895 0.00 0.00 0.00 3.68
630 644 1.656092 TACCTTGTGGGGTTGGGCAA 61.656 55.000 0.00 0.00 40.48 4.52
631 645 1.439524 ATACCTTGTGGGGTTGGGCA 61.440 55.000 0.00 0.00 40.48 5.36
635 649 3.496331 AGTTGAATACCTTGTGGGGTTG 58.504 45.455 0.00 0.00 40.48 3.77
636 650 3.499745 GGAGTTGAATACCTTGTGGGGTT 60.500 47.826 0.00 0.00 40.48 4.11
637 651 2.041216 GGAGTTGAATACCTTGTGGGGT 59.959 50.000 0.00 0.00 42.86 4.95
641 655 3.753272 CAGTGGGAGTTGAATACCTTGTG 59.247 47.826 0.00 0.00 0.00 3.33
642 656 3.244911 CCAGTGGGAGTTGAATACCTTGT 60.245 47.826 0.00 0.00 35.59 3.16
644 658 2.290960 GCCAGTGGGAGTTGAATACCTT 60.291 50.000 12.15 0.00 35.59 3.50
645 659 1.282157 GCCAGTGGGAGTTGAATACCT 59.718 52.381 12.15 0.00 35.59 3.08
646 660 1.004277 TGCCAGTGGGAGTTGAATACC 59.996 52.381 12.15 0.00 35.59 2.73
649 663 0.606401 CGTGCCAGTGGGAGTTGAAT 60.606 55.000 12.15 0.00 35.59 2.57
650 664 1.227823 CGTGCCAGTGGGAGTTGAA 60.228 57.895 12.15 0.00 35.59 2.69
651 665 2.425592 CGTGCCAGTGGGAGTTGA 59.574 61.111 12.15 0.00 35.59 3.18
652 666 3.357079 GCGTGCCAGTGGGAGTTG 61.357 66.667 12.15 2.04 35.59 3.16
653 667 4.988598 CGCGTGCCAGTGGGAGTT 62.989 66.667 12.15 0.00 35.59 3.01
683 3947 2.184579 GGCTTTCCCGAGACCGAG 59.815 66.667 0.00 0.00 38.22 4.63
684 3948 2.602267 TGGCTTTCCCGAGACCGA 60.602 61.111 0.00 0.00 38.22 4.69
685 3949 2.125512 CTGGCTTTCCCGAGACCG 60.126 66.667 0.00 0.00 35.87 4.79
686 3950 2.269241 CCTGGCTTTCCCGAGACC 59.731 66.667 0.00 0.00 35.87 3.85
687 3951 2.269241 CCCTGGCTTTCCCGAGAC 59.731 66.667 0.00 0.00 35.87 3.36
688 3952 3.717294 GCCCTGGCTTTCCCGAGA 61.717 66.667 0.00 0.00 38.26 4.04
707 3971 4.895668 ACCACATGGCTGAAAATGAAAT 57.104 36.364 0.00 0.00 39.32 2.17
765 4029 0.675837 CATAGAGGATGCCGCATGGG 60.676 60.000 11.49 2.06 39.58 4.00
814 4084 4.609018 AAGTGCTCAGTGGCGCGT 62.609 61.111 8.43 5.85 45.99 6.01
857 4127 2.956077 TTTGTTGGGTTGGGAGGCCC 62.956 60.000 0.00 0.00 45.71 5.80
896 4166 6.402222 AGCTTGAACTGAATCTTTCTCGTAT 58.598 36.000 0.00 0.00 0.00 3.06
898 4168 4.636249 AGCTTGAACTGAATCTTTCTCGT 58.364 39.130 0.00 0.00 0.00 4.18
900 4170 5.700373 ACTGAGCTTGAACTGAATCTTTCTC 59.300 40.000 0.00 0.00 0.00 2.87
954 4224 9.459640 TGTCGAATTAAACTATGTACTCTATGC 57.540 33.333 0.00 0.00 0.00 3.14
1170 4440 3.250323 CAGAGCACGTCATCGCCG 61.250 66.667 0.00 0.00 41.18 6.46
1458 4734 1.080705 GTGGACGACCTTGACCTCG 60.081 63.158 5.33 0.00 37.04 4.63
1600 4876 2.023223 GAGTAAACGTCGCCGCCAA 61.023 57.895 0.00 0.00 37.70 4.52
1602 4878 1.356527 ATTGAGTAAACGTCGCCGCC 61.357 55.000 0.00 0.00 37.70 6.13
1624 4900 3.054361 ACCATGACAATCTTGGGGTACTC 60.054 47.826 13.55 0.00 43.67 2.59
1627 4903 3.458118 CCTACCATGACAATCTTGGGGTA 59.542 47.826 13.55 5.61 43.67 3.69
1629 4905 2.242196 ACCTACCATGACAATCTTGGGG 59.758 50.000 13.55 9.12 43.67 4.96
1630 4906 3.054434 TCACCTACCATGACAATCTTGGG 60.054 47.826 13.55 1.41 43.67 4.12
1641 4917 3.446161 TCCTACGAAGTTCACCTACCATG 59.554 47.826 3.32 0.00 37.78 3.66
1667 4943 1.534595 GACAACTGCTTGCTGGAAGAG 59.465 52.381 13.43 9.42 34.07 2.85
1668 4944 1.597742 GACAACTGCTTGCTGGAAGA 58.402 50.000 13.43 0.00 34.07 2.87
1669 4945 0.236711 CGACAACTGCTTGCTGGAAG 59.763 55.000 4.37 4.37 34.41 3.46
1670 4946 0.179059 TCGACAACTGCTTGCTGGAA 60.179 50.000 4.64 0.00 0.00 3.53
1671 4947 0.035317 ATCGACAACTGCTTGCTGGA 59.965 50.000 0.00 0.00 0.00 3.86
1672 4948 0.877071 AATCGACAACTGCTTGCTGG 59.123 50.000 0.00 0.00 0.00 4.85
1673 4949 2.031769 TGAAATCGACAACTGCTTGCTG 60.032 45.455 0.00 0.00 0.00 4.41
1674 4950 2.221169 TGAAATCGACAACTGCTTGCT 58.779 42.857 0.00 0.00 0.00 3.91
1675 4951 2.031682 ACTGAAATCGACAACTGCTTGC 60.032 45.455 0.00 0.00 0.00 4.01
1676 4952 3.248363 TGACTGAAATCGACAACTGCTTG 59.752 43.478 0.00 0.00 0.00 4.01
1677 4953 3.466836 TGACTGAAATCGACAACTGCTT 58.533 40.909 0.00 0.00 0.00 3.91
1678 4954 3.111853 TGACTGAAATCGACAACTGCT 57.888 42.857 0.00 0.00 0.00 4.24
1679 4955 3.878086 TTGACTGAAATCGACAACTGC 57.122 42.857 0.00 0.00 0.00 4.40
1680 4956 5.235186 AGAGTTTGACTGAAATCGACAACTG 59.765 40.000 0.00 0.00 0.00 3.16
1681 4957 5.360591 AGAGTTTGACTGAAATCGACAACT 58.639 37.500 0.00 0.00 0.00 3.16
1682 4958 5.659048 AGAGTTTGACTGAAATCGACAAC 57.341 39.130 0.00 0.00 0.00 3.32
1683 4959 6.513180 AGTAGAGTTTGACTGAAATCGACAA 58.487 36.000 0.00 0.00 0.00 3.18
1684 4960 6.085555 AGTAGAGTTTGACTGAAATCGACA 57.914 37.500 0.00 0.00 0.00 4.35
1685 4961 5.284188 CGAGTAGAGTTTGACTGAAATCGAC 59.716 44.000 0.00 0.00 32.36 4.20
1686 4962 5.391449 CGAGTAGAGTTTGACTGAAATCGA 58.609 41.667 0.00 0.00 32.36 3.59
1687 4963 4.559251 CCGAGTAGAGTTTGACTGAAATCG 59.441 45.833 0.00 0.00 31.24 3.34
1688 4964 4.865365 CCCGAGTAGAGTTTGACTGAAATC 59.135 45.833 0.00 0.00 0.00 2.17
1689 4965 4.822026 CCCGAGTAGAGTTTGACTGAAAT 58.178 43.478 0.00 0.00 0.00 2.17
1690 4966 3.554337 GCCCGAGTAGAGTTTGACTGAAA 60.554 47.826 0.00 0.00 0.00 2.69
1691 4967 2.029290 GCCCGAGTAGAGTTTGACTGAA 60.029 50.000 0.00 0.00 0.00 3.02
1692 4968 1.544691 GCCCGAGTAGAGTTTGACTGA 59.455 52.381 0.00 0.00 0.00 3.41
1693 4969 1.732732 CGCCCGAGTAGAGTTTGACTG 60.733 57.143 0.00 0.00 0.00 3.51
1694 4970 0.526662 CGCCCGAGTAGAGTTTGACT 59.473 55.000 0.00 0.00 0.00 3.41
1695 4971 0.243095 ACGCCCGAGTAGAGTTTGAC 59.757 55.000 0.00 0.00 0.00 3.18
1696 4972 0.242825 CACGCCCGAGTAGAGTTTGA 59.757 55.000 0.00 0.00 0.00 2.69
1697 4973 0.242825 TCACGCCCGAGTAGAGTTTG 59.757 55.000 0.00 0.00 0.00 2.93
1698 4974 0.963962 TTCACGCCCGAGTAGAGTTT 59.036 50.000 0.00 0.00 0.00 2.66
1699 4975 0.963962 TTTCACGCCCGAGTAGAGTT 59.036 50.000 0.00 0.00 0.00 3.01
1700 4976 1.183549 ATTTCACGCCCGAGTAGAGT 58.816 50.000 0.00 0.00 0.00 3.24
1701 4977 3.004419 TCATATTTCACGCCCGAGTAGAG 59.996 47.826 0.00 0.00 0.00 2.43
1702 4978 2.953648 TCATATTTCACGCCCGAGTAGA 59.046 45.455 0.00 0.00 0.00 2.59
1703 4979 3.364889 TCATATTTCACGCCCGAGTAG 57.635 47.619 0.00 0.00 0.00 2.57
1704 4980 3.119065 TGTTCATATTTCACGCCCGAGTA 60.119 43.478 0.00 0.00 0.00 2.59
1705 4981 2.277084 GTTCATATTTCACGCCCGAGT 58.723 47.619 0.00 0.00 0.00 4.18
1706 4982 2.276201 TGTTCATATTTCACGCCCGAG 58.724 47.619 0.00 0.00 0.00 4.63
1707 4983 2.388310 TGTTCATATTTCACGCCCGA 57.612 45.000 0.00 0.00 0.00 5.14
1708 4984 3.479505 TTTGTTCATATTTCACGCCCG 57.520 42.857 0.00 0.00 0.00 6.13
1709 4985 6.367422 TCAAAATTTGTTCATATTTCACGCCC 59.633 34.615 5.56 0.00 0.00 6.13
1710 4986 7.344910 TCAAAATTTGTTCATATTTCACGCC 57.655 32.000 5.56 0.00 0.00 5.68
1711 4987 8.272176 TGTTCAAAATTTGTTCATATTTCACGC 58.728 29.630 5.56 0.00 0.00 5.34
1729 5005 9.725019 TCAGAAAGCTAGATATCTTGTTCAAAA 57.275 29.630 11.25 0.00 0.00 2.44
1730 5006 9.725019 TTCAGAAAGCTAGATATCTTGTTCAAA 57.275 29.630 11.25 6.08 0.00 2.69
1731 5007 9.725019 TTTCAGAAAGCTAGATATCTTGTTCAA 57.275 29.630 11.25 0.00 0.00 2.69
1732 5008 9.376075 CTTTCAGAAAGCTAGATATCTTGTTCA 57.624 33.333 11.25 0.00 0.00 3.18
1753 5029 2.293122 CCAAAACCGACTGATGCTTTCA 59.707 45.455 0.00 0.00 0.00 2.69
1754 5030 2.293399 ACCAAAACCGACTGATGCTTTC 59.707 45.455 0.00 0.00 0.00 2.62
1755 5031 2.034558 CACCAAAACCGACTGATGCTTT 59.965 45.455 0.00 0.00 0.00 3.51
1756 5032 1.608590 CACCAAAACCGACTGATGCTT 59.391 47.619 0.00 0.00 0.00 3.91
1757 5033 1.238439 CACCAAAACCGACTGATGCT 58.762 50.000 0.00 0.00 0.00 3.79
1758 5034 0.951558 ACACCAAAACCGACTGATGC 59.048 50.000 0.00 0.00 0.00 3.91
1759 5035 3.708563 AAACACCAAAACCGACTGATG 57.291 42.857 0.00 0.00 0.00 3.07
1760 5036 4.158764 TCAAAAACACCAAAACCGACTGAT 59.841 37.500 0.00 0.00 0.00 2.90
1761 5037 3.506455 TCAAAAACACCAAAACCGACTGA 59.494 39.130 0.00 0.00 0.00 3.41
1762 5038 3.839293 TCAAAAACACCAAAACCGACTG 58.161 40.909 0.00 0.00 0.00 3.51
1763 5039 3.674955 GCTCAAAAACACCAAAACCGACT 60.675 43.478 0.00 0.00 0.00 4.18
1764 5040 2.601314 GCTCAAAAACACCAAAACCGAC 59.399 45.455 0.00 0.00 0.00 4.79
1765 5041 2.494073 AGCTCAAAAACACCAAAACCGA 59.506 40.909 0.00 0.00 0.00 4.69
1766 5042 2.887337 AGCTCAAAAACACCAAAACCG 58.113 42.857 0.00 0.00 0.00 4.44
1767 5043 3.621268 GGAAGCTCAAAAACACCAAAACC 59.379 43.478 0.00 0.00 0.00 3.27
1768 5044 4.503910 AGGAAGCTCAAAAACACCAAAAC 58.496 39.130 0.00 0.00 0.00 2.43
1769 5045 4.676723 CGAGGAAGCTCAAAAACACCAAAA 60.677 41.667 0.00 0.00 0.00 2.44
1770 5046 3.181491 CGAGGAAGCTCAAAAACACCAAA 60.181 43.478 0.00 0.00 0.00 3.28
1771 5047 2.357637 CGAGGAAGCTCAAAAACACCAA 59.642 45.455 0.00 0.00 0.00 3.67
1772 5048 1.946768 CGAGGAAGCTCAAAAACACCA 59.053 47.619 0.00 0.00 0.00 4.17
1773 5049 1.947456 ACGAGGAAGCTCAAAAACACC 59.053 47.619 0.00 0.00 0.00 4.16
1774 5050 2.348591 CGACGAGGAAGCTCAAAAACAC 60.349 50.000 0.00 0.00 0.00 3.32
1775 5051 1.864711 CGACGAGGAAGCTCAAAAACA 59.135 47.619 0.00 0.00 0.00 2.83
1776 5052 1.398578 GCGACGAGGAAGCTCAAAAAC 60.399 52.381 0.00 0.00 0.00 2.43
1777 5053 0.865769 GCGACGAGGAAGCTCAAAAA 59.134 50.000 0.00 0.00 0.00 1.94
1778 5054 0.949105 GGCGACGAGGAAGCTCAAAA 60.949 55.000 0.00 0.00 0.00 2.44
1779 5055 1.374252 GGCGACGAGGAAGCTCAAA 60.374 57.895 0.00 0.00 0.00 2.69
1780 5056 2.261671 GGCGACGAGGAAGCTCAA 59.738 61.111 0.00 0.00 0.00 3.02
1781 5057 3.760035 GGGCGACGAGGAAGCTCA 61.760 66.667 0.00 0.00 0.00 4.26
1782 5058 3.007973 AAGGGCGACGAGGAAGCTC 62.008 63.158 0.00 0.00 0.00 4.09
1783 5059 2.997897 AAGGGCGACGAGGAAGCT 60.998 61.111 0.00 0.00 0.00 3.74
1784 5060 2.815647 CAAGGGCGACGAGGAAGC 60.816 66.667 0.00 0.00 0.00 3.86
1785 5061 1.961180 ATCCAAGGGCGACGAGGAAG 61.961 60.000 0.00 0.00 32.09 3.46
1786 5062 1.987855 ATCCAAGGGCGACGAGGAA 60.988 57.895 0.00 0.00 32.09 3.36
1787 5063 2.363795 ATCCAAGGGCGACGAGGA 60.364 61.111 0.00 0.00 0.00 3.71
1788 5064 2.202932 CATCCAAGGGCGACGAGG 60.203 66.667 0.00 0.00 0.00 4.63
1789 5065 1.811266 CACATCCAAGGGCGACGAG 60.811 63.158 0.00 0.00 0.00 4.18
1790 5066 2.264480 CACATCCAAGGGCGACGA 59.736 61.111 0.00 0.00 0.00 4.20
1791 5067 2.047274 ACACATCCAAGGGCGACG 60.047 61.111 0.00 0.00 0.00 5.12
1792 5068 2.040544 CCACACATCCAAGGGCGAC 61.041 63.158 0.00 0.00 0.00 5.19
1793 5069 2.350895 CCACACATCCAAGGGCGA 59.649 61.111 0.00 0.00 0.00 5.54
1794 5070 3.443045 GCCACACATCCAAGGGCG 61.443 66.667 0.00 0.00 34.56 6.13
1795 5071 2.036256 AGCCACACATCCAAGGGC 59.964 61.111 0.00 0.00 44.92 5.19
1796 5072 2.345760 GCAGCCACACATCCAAGGG 61.346 63.158 0.00 0.00 0.00 3.95
1797 5073 2.345760 GGCAGCCACACATCCAAGG 61.346 63.158 6.55 0.00 0.00 3.61
1798 5074 0.968901 ATGGCAGCCACACATCCAAG 60.969 55.000 19.10 0.00 35.80 3.61
1799 5075 1.077086 ATGGCAGCCACACATCCAA 59.923 52.632 19.10 0.00 35.80 3.53
1800 5076 1.679641 CATGGCAGCCACACATCCA 60.680 57.895 19.10 0.00 35.80 3.41
1801 5077 3.072486 GCATGGCAGCCACACATCC 62.072 63.158 19.10 0.00 35.80 3.51
1802 5078 2.344981 TGCATGGCAGCCACACATC 61.345 57.895 19.10 4.77 35.80 3.06
1803 5079 2.283316 TGCATGGCAGCCACACAT 60.283 55.556 19.10 0.00 35.80 3.21
1804 5080 3.296836 GTGCATGGCAGCCACACA 61.297 61.111 24.03 19.11 40.08 3.72
1805 5081 4.409218 CGTGCATGGCAGCCACAC 62.409 66.667 19.10 20.05 40.08 3.82
1806 5082 4.953010 ACGTGCATGGCAGCCACA 62.953 61.111 19.10 8.73 40.08 4.17
1807 5083 4.107051 GACGTGCATGGCAGCCAC 62.107 66.667 19.10 5.54 40.08 5.01
1808 5084 4.639906 TGACGTGCATGGCAGCCA 62.640 61.111 18.99 18.99 40.08 4.75
1809 5085 4.107051 GTGACGTGCATGGCAGCC 62.107 66.667 16.72 3.66 40.08 4.85
1810 5086 4.450122 CGTGACGTGCATGGCAGC 62.450 66.667 16.72 9.42 40.08 5.25
1811 5087 3.043713 ACGTGACGTGCATGGCAG 61.044 61.111 16.72 11.97 40.08 4.85
1827 5103 4.092968 AGACGGAAGAATAATCGTTTGCAC 59.907 41.667 0.00 0.00 35.91 4.57
1828 5104 4.092821 CAGACGGAAGAATAATCGTTTGCA 59.907 41.667 0.00 0.00 35.91 4.08
1829 5105 4.578601 CAGACGGAAGAATAATCGTTTGC 58.421 43.478 0.00 0.00 35.91 3.68
1830 5106 4.494199 GGCAGACGGAAGAATAATCGTTTG 60.494 45.833 0.00 0.00 39.59 2.93
1831 5107 3.621715 GGCAGACGGAAGAATAATCGTTT 59.378 43.478 0.00 0.00 35.91 3.60
1832 5108 3.195661 GGCAGACGGAAGAATAATCGTT 58.804 45.455 0.00 0.00 35.91 3.85
1833 5109 2.483188 GGGCAGACGGAAGAATAATCGT 60.483 50.000 0.00 0.00 38.62 3.73
1834 5110 2.135933 GGGCAGACGGAAGAATAATCG 58.864 52.381 0.00 0.00 0.00 3.34
1835 5111 2.135933 CGGGCAGACGGAAGAATAATC 58.864 52.381 0.00 0.00 0.00 1.75
1836 5112 2.240493 CGGGCAGACGGAAGAATAAT 57.760 50.000 0.00 0.00 0.00 1.28
1837 5113 3.752796 CGGGCAGACGGAAGAATAA 57.247 52.632 0.00 0.00 0.00 1.40
1856 5132 4.374702 CACACAACGCAGAGCCGC 62.375 66.667 0.00 0.00 0.00 6.53
1857 5133 4.374702 GCACACAACGCAGAGCCG 62.375 66.667 0.00 0.00 0.00 5.52
1858 5134 3.279116 TGCACACAACGCAGAGCC 61.279 61.111 0.00 0.00 33.55 4.70
1859 5135 2.051882 GTGCACACAACGCAGAGC 60.052 61.111 13.17 0.00 40.78 4.09
1860 5136 0.110509 GATGTGCACACAACGCAGAG 60.111 55.000 24.37 0.00 45.41 3.35
1861 5137 1.941072 GATGTGCACACAACGCAGA 59.059 52.632 24.37 0.00 45.41 4.26
1862 5138 4.520618 GATGTGCACACAACGCAG 57.479 55.556 24.37 0.00 45.41 5.18
1866 5142 0.512952 GTCTCCGATGTGCACACAAC 59.487 55.000 24.37 15.33 45.41 3.32
1867 5143 0.943835 CGTCTCCGATGTGCACACAA 60.944 55.000 24.37 6.90 45.41 3.33
1868 5144 1.372872 CGTCTCCGATGTGCACACA 60.373 57.895 24.37 5.85 46.44 3.72
1869 5145 2.730672 GCGTCTCCGATGTGCACAC 61.731 63.158 24.37 14.98 35.63 3.82
1870 5146 2.432456 GCGTCTCCGATGTGCACA 60.432 61.111 24.08 24.08 35.63 4.57
1871 5147 3.545481 CGCGTCTCCGATGTGCAC 61.545 66.667 10.75 10.75 35.63 4.57
1872 5148 4.794439 CCGCGTCTCCGATGTGCA 62.794 66.667 4.92 0.00 35.63 4.57
1891 5167 4.748679 CAAGCTTCACCGCTGCGC 62.749 66.667 18.00 0.00 40.79 6.09
1892 5168 4.093952 CCAAGCTTCACCGCTGCG 62.094 66.667 16.34 16.34 40.79 5.18
1893 5169 3.741476 CCCAAGCTTCACCGCTGC 61.741 66.667 0.00 0.00 40.79 5.25
1894 5170 3.058160 CCCCAAGCTTCACCGCTG 61.058 66.667 0.00 0.00 40.79 5.18
1895 5171 4.351054 CCCCCAAGCTTCACCGCT 62.351 66.667 0.00 0.00 43.31 5.52
1909 5185 0.627451 ACCCCGTCTTAATTTCCCCC 59.373 55.000 0.00 0.00 0.00 5.40
1910 5186 1.409241 GGACCCCGTCTTAATTTCCCC 60.409 57.143 0.00 0.00 32.47 4.81
1911 5187 1.562942 AGGACCCCGTCTTAATTTCCC 59.437 52.381 0.00 0.00 32.47 3.97
1912 5188 3.361281 AAGGACCCCGTCTTAATTTCC 57.639 47.619 0.00 0.00 32.47 3.13
1913 5189 5.010314 ACAAAAAGGACCCCGTCTTAATTTC 59.990 40.000 0.00 0.00 32.47 2.17
1914 5190 4.897076 ACAAAAAGGACCCCGTCTTAATTT 59.103 37.500 0.00 0.00 32.47 1.82
1915 5191 4.476297 ACAAAAAGGACCCCGTCTTAATT 58.524 39.130 0.00 0.00 32.47 1.40
1916 5192 4.108501 ACAAAAAGGACCCCGTCTTAAT 57.891 40.909 0.00 0.00 32.47 1.40
1917 5193 3.581265 ACAAAAAGGACCCCGTCTTAA 57.419 42.857 0.00 0.00 32.47 1.85
1918 5194 3.581265 AACAAAAAGGACCCCGTCTTA 57.419 42.857 0.00 0.00 32.47 2.10
1919 5195 2.447408 AACAAAAAGGACCCCGTCTT 57.553 45.000 0.00 0.00 32.47 3.01
1920 5196 2.707257 TCTAACAAAAAGGACCCCGTCT 59.293 45.455 0.00 0.00 32.47 4.18
1921 5197 3.130280 TCTAACAAAAAGGACCCCGTC 57.870 47.619 0.00 0.00 0.00 4.79
1922 5198 3.136992 TCTTCTAACAAAAAGGACCCCGT 59.863 43.478 0.00 0.00 0.00 5.28
1923 5199 3.746940 TCTTCTAACAAAAAGGACCCCG 58.253 45.455 0.00 0.00 0.00 5.73
1924 5200 4.981812 TCTCTTCTAACAAAAAGGACCCC 58.018 43.478 0.00 0.00 0.00 4.95
1925 5201 5.866207 TCTCTCTTCTAACAAAAAGGACCC 58.134 41.667 0.00 0.00 0.00 4.46
1926 5202 5.935206 CCTCTCTCTTCTAACAAAAAGGACC 59.065 44.000 0.00 0.00 0.00 4.46
1927 5203 6.526526 ACCTCTCTCTTCTAACAAAAAGGAC 58.473 40.000 0.00 0.00 0.00 3.85
1933 5209 6.055588 CACCAAACCTCTCTCTTCTAACAAA 58.944 40.000 0.00 0.00 0.00 2.83
1934 5210 5.365605 TCACCAAACCTCTCTCTTCTAACAA 59.634 40.000 0.00 0.00 0.00 2.83
1958 5238 4.282703 GGGCTCAAGCAATCCATCATATTT 59.717 41.667 4.13 0.00 44.36 1.40
1963 5243 0.396139 GGGGCTCAAGCAATCCATCA 60.396 55.000 4.13 0.00 44.36 3.07
1964 5244 1.450531 CGGGGCTCAAGCAATCCATC 61.451 60.000 4.13 0.00 44.36 3.51
1968 5254 2.409870 CCACGGGGCTCAAGCAATC 61.410 63.158 0.00 0.00 44.36 2.67
1981 5267 5.831525 TGTACTCCTATATATATGCCCACGG 59.168 44.000 5.44 0.00 0.00 4.94
2012 5298 4.072131 TGCCTTGTCTTGTACTCCAAATC 58.928 43.478 0.00 0.00 31.20 2.17
2014 5300 3.476552 CTGCCTTGTCTTGTACTCCAAA 58.523 45.455 0.00 0.00 31.20 3.28
2094 5381 0.523072 GGTCGCTACCGTTGTGACTA 59.477 55.000 20.84 0.00 42.54 2.59
2113 5400 0.609406 TCTCCAGTCTCACCGTCTGG 60.609 60.000 4.30 4.30 46.94 3.86
2261 5551 0.882474 ATCATACGCTCTCGGCTACC 59.118 55.000 0.00 0.00 40.69 3.18
2277 5567 2.927856 ACCACGGCTCCACCATCA 60.928 61.111 0.00 0.00 39.03 3.07
2279 5569 4.082523 CGACCACGGCTCCACCAT 62.083 66.667 0.00 0.00 39.03 3.55
2338 5628 0.537188 CATCCTTGACACCGGCTACT 59.463 55.000 0.00 0.00 0.00 2.57
2386 5676 2.124736 GCCCATGCTAACTCGGCA 60.125 61.111 2.43 0.00 44.05 5.69
2484 5775 1.470805 CGTGCCTTCGTCCATGATGTA 60.471 52.381 0.00 0.00 0.00 2.29
2541 5832 1.140816 GCGCTTCGTCAACTTCTTCT 58.859 50.000 0.00 0.00 0.00 2.85
2595 5889 2.507102 CGATGCGTGCCTTCGTCT 60.507 61.111 6.24 0.00 36.63 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.