Multiple sequence alignment - TraesCS2D01G319200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G319200 chr2D 100.000 6260 0 0 1 6260 409605615 409599356 0.000000e+00 11561.0
1 TraesCS2D01G319200 chr2D 94.495 327 14 3 3398 3722 376694220 376694544 9.370000e-138 501.0
2 TraesCS2D01G319200 chr2D 93.939 330 14 3 3399 3722 317866158 317865829 1.570000e-135 494.0
3 TraesCS2D01G319200 chr2D 94.172 326 13 4 3399 3722 361254339 361254018 5.640000e-135 492.0
4 TraesCS2D01G319200 chr2D 93.373 332 17 4 3395 3722 317868068 317867738 2.620000e-133 486.0
5 TraesCS2D01G319200 chr2D 84.259 108 9 6 275 378 101954216 101954113 1.440000e-16 99.0
6 TraesCS2D01G319200 chr2B 91.853 1878 80 22 3889 5725 484606938 484605093 0.000000e+00 2553.0
7 TraesCS2D01G319200 chr2B 94.077 1435 71 12 535 1961 484611037 484609609 0.000000e+00 2167.0
8 TraesCS2D01G319200 chr2B 95.130 883 34 4 2517 3399 484607942 484607069 0.000000e+00 1384.0
9 TraesCS2D01G319200 chr2B 97.319 373 9 1 5353 5725 484605022 484604651 3.180000e-177 632.0
10 TraesCS2D01G319200 chr2B 92.347 392 15 3 2066 2444 484608363 484607974 1.530000e-150 544.0
11 TraesCS2D01G319200 chr2B 85.294 544 43 21 5732 6260 484604694 484604173 1.550000e-145 527.0
12 TraesCS2D01G319200 chr2B 86.667 345 32 7 150 488 484640299 484639963 2.760000e-98 370.0
13 TraesCS2D01G319200 chr2B 90.756 119 6 5 5732 5846 484605136 484605019 3.020000e-33 154.0
14 TraesCS2D01G319200 chr2B 95.455 44 0 2 2391 2433 484607979 484607937 1.130000e-07 69.4
15 TraesCS2D01G319200 chr2A 93.734 1596 73 15 562 2148 578165312 578163735 0.000000e+00 2368.0
16 TraesCS2D01G319200 chr2A 94.854 1302 36 4 4451 5725 578161465 578160168 0.000000e+00 2004.0
17 TraesCS2D01G319200 chr2A 94.274 1240 56 9 2160 3399 578163462 578162238 0.000000e+00 1882.0
18 TraesCS2D01G319200 chr2A 98.322 715 12 0 3723 4437 578162243 578161529 0.000000e+00 1254.0
19 TraesCS2D01G319200 chr2A 93.333 540 12 12 5732 6260 578160211 578159685 0.000000e+00 776.0
20 TraesCS2D01G319200 chr2A 86.623 456 50 6 1 450 578165902 578165452 1.570000e-135 494.0
21 TraesCS2D01G319200 chr2A 85.088 114 13 2 2252 2361 81788728 81788841 5.130000e-21 113.0
22 TraesCS2D01G319200 chr2A 96.970 33 1 0 2141 2173 578163730 578163698 8.770000e-04 56.5
23 TraesCS2D01G319200 chr5B 94.529 329 12 5 3399 3722 330740360 330740033 2.600000e-138 503.0
24 TraesCS2D01G319200 chr5B 89.130 92 7 3 6170 6260 575518843 575518754 1.840000e-20 111.0
25 TraesCS2D01G319200 chr5B 87.342 79 7 3 2284 2359 596648753 596648831 3.110000e-13 87.9
26 TraesCS2D01G319200 chr4D 94.785 326 11 4 3399 3722 274462629 274462308 2.600000e-138 503.0
27 TraesCS2D01G319200 chr4D 93.694 333 14 6 3395 3722 390848117 390848447 5.640000e-135 492.0
28 TraesCS2D01G319200 chr3B 94.136 324 14 2 3399 3722 647173672 647173354 7.290000e-134 488.0
29 TraesCS2D01G319200 chr1A 93.578 327 16 4 3399 3722 292767512 292767188 3.390000e-132 483.0
30 TraesCS2D01G319200 chr1A 98.529 68 1 0 6193 6260 522968204 522968271 3.070000e-23 121.0
31 TraesCS2D01G319200 chr1A 98.529 68 1 0 6193 6260 522968351 522968418 3.070000e-23 121.0
32 TraesCS2D01G319200 chr1D 98.529 68 1 0 6193 6260 427630524 427630591 3.070000e-23 121.0
33 TraesCS2D01G319200 chr1B 98.529 68 1 0 6193 6260 579940532 579940599 3.070000e-23 121.0
34 TraesCS2D01G319200 chrUn 98.462 65 1 0 6196 6260 103501141 103501077 1.430000e-21 115.0
35 TraesCS2D01G319200 chrUn 91.111 45 4 0 55 99 3854553 3854509 1.880000e-05 62.1
36 TraesCS2D01G319200 chr5D 89.888 89 8 1 6173 6260 255560861 255560949 5.130000e-21 113.0
37 TraesCS2D01G319200 chr5D 90.000 80 7 1 2284 2362 278311297 278311376 1.110000e-17 102.0
38 TraesCS2D01G319200 chr5A 81.600 125 18 2 2241 2360 620406316 620406440 1.440000e-16 99.0
39 TraesCS2D01G319200 chr3D 89.610 77 8 0 2285 2361 69502031 69502107 1.440000e-16 99.0
40 TraesCS2D01G319200 chr6A 87.500 80 9 1 2284 2362 559170173 559170094 2.400000e-14 91.6
41 TraesCS2D01G319200 chr6B 83.908 87 12 2 2284 2369 239309795 239309710 1.450000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G319200 chr2D 409599356 409605615 6259 True 11561.000000 11561 100.000000 1 6260 1 chr2D.!!$R3 6259
1 TraesCS2D01G319200 chr2D 317865829 317868068 2239 True 490.000000 494 93.656000 3395 3722 2 chr2D.!!$R4 327
2 TraesCS2D01G319200 chr2B 484604173 484611037 6864 True 1003.800000 2553 92.778875 535 6260 8 chr2B.!!$R2 5725
3 TraesCS2D01G319200 chr2A 578159685 578165902 6217 True 1262.071429 2368 94.015714 1 6260 7 chr2A.!!$R1 6259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 427 0.459899 TACTCATGCCGATGCGTTCT 59.540 50.000 0.00 0.00 41.78 3.01 F
1106 1210 0.317436 CGAGCTGTGACGATAGAGCC 60.317 60.000 0.00 2.02 37.66 4.70 F
1862 1967 1.154225 GAAATTCTGGCGCACCACG 60.154 57.895 10.83 0.00 42.67 4.94 F
2474 3990 1.129998 CTCCTGTGAGCATTGCTTTCG 59.870 52.381 13.35 2.29 39.88 3.46 F
2508 4024 1.664016 GCATGTGTTGAAGGTTCTGCG 60.664 52.381 0.00 0.00 0.00 5.18 F
3477 4993 2.347490 CGTGGAGGAAGGTGTGGG 59.653 66.667 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2159 0.539051 ACATGAGAGCTAGCCACACC 59.461 55.000 12.13 3.44 0.00 4.16 R
2265 3772 1.338136 AATCCCCACGAATCTCCGCT 61.338 55.000 0.00 0.00 0.00 5.52 R
3505 5035 0.819259 CCCCTGCTCTCTCTCTCTCG 60.819 65.000 0.00 0.00 0.00 4.04 R
3507 5037 1.076044 GCCCCTGCTCTCTCTCTCT 60.076 63.158 0.00 0.00 33.53 3.10 R
3676 5206 1.977009 GCCCAGTTAGTTGTGGCCC 60.977 63.158 0.00 0.00 36.07 5.80 R
5326 6943 0.384669 CATCGTCTAGACCCGGGAAC 59.615 60.000 32.02 20.68 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.148150 GCTGATCATTTGCCAAAATCTTTCAA 59.852 34.615 0.00 0.00 33.59 2.69
39 40 6.990939 TCATTTGCCAAAATCTTTCAACATGA 59.009 30.769 0.00 0.00 33.59 3.07
87 88 8.477256 GGAATATTTGGATTCAAAGGAATGTGA 58.523 33.333 5.22 0.00 44.87 3.58
114 115 2.684001 TAGAGCCATACAACCAACCG 57.316 50.000 0.00 0.00 0.00 4.44
131 132 2.119495 ACCGTTCAGGCTTGGAGATAT 58.881 47.619 0.00 0.00 46.52 1.63
142 143 5.044550 AGGCTTGGAGATATTTCCTCAAAGT 60.045 40.000 13.16 0.00 41.53 2.66
145 146 7.275920 GCTTGGAGATATTTCCTCAAAGTAGA 58.724 38.462 13.16 0.00 41.53 2.59
147 148 7.125792 TGGAGATATTTCCTCAAAGTAGACC 57.874 40.000 13.16 0.00 38.12 3.85
150 151 7.070074 GGAGATATTTCCTCAAAGTAGACCTCA 59.930 40.741 5.02 0.00 34.27 3.86
162 163 2.645838 AGACCTCAAGCTGCTTCAAA 57.354 45.000 12.82 0.21 0.00 2.69
186 187 8.475331 AATCAAAATAAAAGAGAAGCATGCAG 57.525 30.769 21.98 0.00 0.00 4.41
199 200 1.135859 GCATGCAGACTCTTTTCACCG 60.136 52.381 14.21 0.00 0.00 4.94
207 208 5.046529 CAGACTCTTTTCACCGATGGATAG 58.953 45.833 0.00 0.00 0.00 2.08
272 279 8.779303 CATTGGTTAACCTTTATTTTGGTTTCC 58.221 33.333 24.78 7.13 43.27 3.13
289 296 9.981114 TTTGGTTTCCATTCTTTTATTCTCTTC 57.019 29.630 0.00 0.00 31.53 2.87
324 331 8.956426 CATCCCACTTTGTAACATACTGTTTAT 58.044 33.333 0.00 0.00 41.45 1.40
368 375 6.921332 AAAATAATTGTTCTACGGTTTGCG 57.079 33.333 0.00 0.00 0.00 4.85
372 379 0.600782 TGTTCTACGGTTTGCGGGTC 60.601 55.000 0.00 0.00 0.00 4.46
384 391 2.663826 TGCGGGTCAAAAATTATGCC 57.336 45.000 0.00 0.00 0.00 4.40
393 400 6.352137 GGGTCAAAAATTATGCCTTCCAATCT 60.352 38.462 0.00 0.00 0.00 2.40
397 404 8.036575 TCAAAAATTATGCCTTCCAATCTTCTG 58.963 33.333 0.00 0.00 0.00 3.02
399 406 7.486407 AAATTATGCCTTCCAATCTTCTGTT 57.514 32.000 0.00 0.00 0.00 3.16
406 413 5.473504 GCCTTCCAATCTTCTGTTTTACTCA 59.526 40.000 0.00 0.00 0.00 3.41
410 417 5.415701 TCCAATCTTCTGTTTTACTCATGCC 59.584 40.000 0.00 0.00 0.00 4.40
412 419 4.265904 TCTTCTGTTTTACTCATGCCGA 57.734 40.909 0.00 0.00 0.00 5.54
414 421 4.631377 TCTTCTGTTTTACTCATGCCGATG 59.369 41.667 0.00 0.00 0.00 3.84
415 422 2.677836 TCTGTTTTACTCATGCCGATGC 59.322 45.455 0.00 0.00 38.26 3.91
416 423 1.396648 TGTTTTACTCATGCCGATGCG 59.603 47.619 0.00 0.00 41.78 4.73
417 424 1.396996 GTTTTACTCATGCCGATGCGT 59.603 47.619 0.00 0.00 41.78 5.24
418 425 1.732941 TTTACTCATGCCGATGCGTT 58.267 45.000 0.00 0.00 41.78 4.84
419 426 1.286501 TTACTCATGCCGATGCGTTC 58.713 50.000 0.00 0.00 41.78 3.95
420 427 0.459899 TACTCATGCCGATGCGTTCT 59.540 50.000 0.00 0.00 41.78 3.01
424 431 1.130373 TCATGCCGATGCGTTCTTTTC 59.870 47.619 0.00 0.00 41.78 2.29
425 432 1.135717 CATGCCGATGCGTTCTTTTCA 60.136 47.619 0.00 0.00 41.78 2.69
428 435 1.135689 GCCGATGCGTTCTTTTCATGT 60.136 47.619 0.00 0.00 0.00 3.21
434 441 4.630894 TGCGTTCTTTTCATGTTCTTGT 57.369 36.364 0.00 0.00 0.00 3.16
450 457 8.960591 CATGTTCTTGTATGTTTTCCCTTCTAT 58.039 33.333 0.00 0.00 0.00 1.98
549 634 6.761099 AGTCATACATGTCTCGTAGAAGTT 57.239 37.500 0.00 0.00 34.09 2.66
558 643 6.140303 TGTCTCGTAGAAGTTTTGTACAGT 57.860 37.500 0.00 0.00 34.09 3.55
560 645 7.037438 TGTCTCGTAGAAGTTTTGTACAGTTT 58.963 34.615 0.00 0.00 34.09 2.66
564 649 6.036300 TCGTAGAAGTTTTGTACAGTTTGTGG 59.964 38.462 0.00 0.00 30.42 4.17
622 707 1.142778 GAGCGTCAATCACCTCTCGC 61.143 60.000 0.00 0.00 43.16 5.03
723 823 2.424302 CGGTGGGACGGTGACTTT 59.576 61.111 0.00 0.00 0.00 2.66
900 1004 2.365105 CCCCTAGCCTCCCGTTCA 60.365 66.667 0.00 0.00 0.00 3.18
914 1018 1.502231 CGTTCAACTCTGACCCACAG 58.498 55.000 0.00 0.00 46.97 3.66
934 1038 2.425592 CACCGACAAGTGGCTCCA 59.574 61.111 0.00 0.00 33.95 3.86
957 1061 1.305219 ATTTCGTGGCCCACATGTCG 61.305 55.000 15.45 0.00 37.38 4.35
959 1063 4.697756 CGTGGCCCACATGTCGGT 62.698 66.667 15.45 0.00 33.40 4.69
1011 1115 2.384828 GGGAAATGGATGGGTGTTACC 58.615 52.381 0.00 0.00 37.60 2.85
1106 1210 0.317436 CGAGCTGTGACGATAGAGCC 60.317 60.000 0.00 2.02 37.66 4.70
1525 1629 2.290387 TGGTTCCCTGCTGCGTATTTTA 60.290 45.455 0.00 0.00 0.00 1.52
1578 1682 2.414994 ATGCTCTGCTTGTATGTGCT 57.585 45.000 0.00 0.00 0.00 4.40
1587 1691 2.351738 GCTTGTATGTGCTGTTTGACCC 60.352 50.000 0.00 0.00 0.00 4.46
1674 1778 2.093306 TCGCAGACGATTGGTTCATT 57.907 45.000 0.00 0.00 45.12 2.57
1726 1830 6.015180 TGCTGATTCTTTCCAAATTTGTAGCT 60.015 34.615 16.73 0.00 0.00 3.32
1772 1876 1.401905 GATTGTGCGAGGGTCCAAATC 59.598 52.381 0.00 0.00 0.00 2.17
1781 1885 1.809207 GGTCCAAATCGCACCCATG 59.191 57.895 0.00 0.00 0.00 3.66
1862 1967 1.154225 GAAATTCTGGCGCACCACG 60.154 57.895 10.83 0.00 42.67 4.94
1983 2098 7.201530 GGTCACCGTCTATTTTCTCTGTTATTG 60.202 40.741 0.00 0.00 0.00 1.90
2044 2159 2.169352 CTGGAGTGTGGGTTCTCTATGG 59.831 54.545 0.00 0.00 0.00 2.74
2054 2169 2.103263 GGTTCTCTATGGGTGTGGCTAG 59.897 54.545 0.00 0.00 0.00 3.42
2178 3685 9.509956 AAACTACAGTAAAATGCAGGTGTATTA 57.490 29.630 0.00 0.00 30.21 0.98
2209 3716 1.606668 TCCAACTTTTGTGATGTCGCC 59.393 47.619 0.00 0.00 0.00 5.54
2265 3772 5.835819 TGACTCCCACACCATTTGATTTTAA 59.164 36.000 0.00 0.00 0.00 1.52
2363 3870 8.082852 TCTAGATGAGAATTAGCAAATCCGTAC 58.917 37.037 0.00 0.00 0.00 3.67
2366 3873 5.597806 TGAGAATTAGCAAATCCGTACGAT 58.402 37.500 18.76 5.60 0.00 3.73
2474 3990 1.129998 CTCCTGTGAGCATTGCTTTCG 59.870 52.381 13.35 2.29 39.88 3.46
2508 4024 1.664016 GCATGTGTTGAAGGTTCTGCG 60.664 52.381 0.00 0.00 0.00 5.18
2522 4038 3.687698 GGTTCTGCGCAAAATTACCTAGA 59.312 43.478 13.05 0.00 0.00 2.43
2547 4063 5.648178 TGCATTGCATGACAAGAGTTATT 57.352 34.783 7.38 0.00 42.87 1.40
2682 4198 7.499232 ACCAATATTCTTGTGGTTAGCAGTATC 59.501 37.037 0.00 0.00 43.19 2.24
2980 4496 7.278211 TGAAAAGAACGAGAATAGTGATTCG 57.722 36.000 0.00 0.00 45.34 3.34
3063 4579 3.517901 ACAAACATCTCGTTATCTCCCCA 59.482 43.478 0.00 0.00 36.59 4.96
3244 4760 8.768957 ACATATGATTTACAGATCCTCAATCG 57.231 34.615 10.38 0.00 39.55 3.34
3472 4988 2.670148 GGATGGCGTGGAGGAAGGT 61.670 63.158 0.00 0.00 0.00 3.50
3477 4993 2.347490 CGTGGAGGAAGGTGTGGG 59.653 66.667 0.00 0.00 0.00 4.61
3676 5206 8.095169 AGCCCCTAATAACGATAAGATAAACTG 58.905 37.037 0.00 0.00 0.00 3.16
3722 5252 4.000988 CCCTAATATGCCGGTCATAACAC 58.999 47.826 18.34 0.00 40.73 3.32
3723 5253 4.504165 CCCTAATATGCCGGTCATAACACA 60.504 45.833 18.34 0.14 40.73 3.72
3724 5254 4.451096 CCTAATATGCCGGTCATAACACAC 59.549 45.833 18.34 0.00 40.73 3.82
3725 5255 3.838244 ATATGCCGGTCATAACACACT 57.162 42.857 18.34 3.23 40.73 3.55
3726 5256 2.024176 ATGCCGGTCATAACACACTC 57.976 50.000 1.90 0.00 32.59 3.51
3727 5257 0.973632 TGCCGGTCATAACACACTCT 59.026 50.000 1.90 0.00 0.00 3.24
3735 5265 5.305585 GGTCATAACACACTCTTTCCTTGA 58.694 41.667 0.00 0.00 0.00 3.02
4438 5968 2.316108 AGCCAGGTAACCAACAAAAGG 58.684 47.619 0.00 0.00 37.17 3.11
4443 5973 5.134661 CCAGGTAACCAACAAAAGGTAAGA 58.865 41.667 0.00 0.00 38.76 2.10
4446 5976 5.103813 AGGTAACCAACAAAAGGTAAGACCT 60.104 40.000 0.00 0.00 46.51 3.85
4494 6074 2.260434 GTGCTTGCATGGTGCTGG 59.740 61.111 0.00 0.00 45.31 4.85
4508 6088 2.137523 GTGCTGGTTTGCATTCTTTGG 58.862 47.619 0.00 0.00 45.23 3.28
4562 6143 5.580691 TGCATGTTAGATGCTACACTGTAAC 59.419 40.000 15.19 0.00 44.79 2.50
4636 6218 6.578020 TTTACTAACACAAAGACGTCACAG 57.422 37.500 19.50 8.91 0.00 3.66
4716 6298 3.009033 CCCCCTCTGTGATTAGTGTGAAA 59.991 47.826 0.00 0.00 0.00 2.69
4761 6343 3.245048 GTGCCTTCAATTCAAACAAACCG 59.755 43.478 0.00 0.00 0.00 4.44
4780 6362 1.338200 CGTTGGAAGCCACTTCTAGCT 60.338 52.381 7.24 0.00 40.07 3.32
4939 6555 4.742438 TTTGCTCTTAACCTTGTTAGCG 57.258 40.909 0.00 0.00 32.67 4.26
5032 6649 2.755655 ACGTTCAGTGAGGATCCTGTAG 59.244 50.000 22.02 6.37 35.68 2.74
5052 6669 4.152607 AGCGAAGACAGCAAAGAAAATC 57.847 40.909 0.00 0.00 37.01 2.17
5326 6943 2.435586 CAGGTGCTCTCCTTGGCG 60.436 66.667 0.00 0.00 35.37 5.69
5573 7638 6.367983 TCTTTTATCAGCTATGCCAGGAAAT 58.632 36.000 0.00 0.00 0.00 2.17
5629 7694 5.761234 ACAAAACCTTCTCGCTGTATTAACA 59.239 36.000 0.00 0.00 0.00 2.41
5714 7779 9.639601 GGGTGAAGAAATATGTTAAGAAAAAGG 57.360 33.333 0.00 0.00 0.00 3.11
5715 7780 9.639601 GGTGAAGAAATATGTTAAGAAAAAGGG 57.360 33.333 0.00 0.00 0.00 3.95
5726 7791 8.073467 TGTTAAGAAAAAGGGTGAAGAAATGT 57.927 30.769 0.00 0.00 0.00 2.71
5727 7792 8.536175 TGTTAAGAAAAAGGGTGAAGAAATGTT 58.464 29.630 0.00 0.00 0.00 2.71
5731 7796 8.533569 AGAAAAAGGGTGAAGAAATGTTAAGA 57.466 30.769 0.00 0.00 0.00 2.10
5732 7797 8.977412 AGAAAAAGGGTGAAGAAATGTTAAGAA 58.023 29.630 0.00 0.00 0.00 2.52
5733 7798 9.594478 GAAAAAGGGTGAAGAAATGTTAAGAAA 57.406 29.630 0.00 0.00 0.00 2.52
5734 7799 9.952030 AAAAAGGGTGAAGAAATGTTAAGAAAA 57.048 25.926 0.00 0.00 0.00 2.29
5735 7800 9.952030 AAAAGGGTGAAGAAATGTTAAGAAAAA 57.048 25.926 0.00 0.00 0.00 1.94
5794 7859 2.622064 ATAGACCTTTGGTGATCGGC 57.378 50.000 0.00 0.00 35.25 5.54
5947 8039 3.827008 ACGCAGTATGATTGACTCCAT 57.173 42.857 0.00 0.00 41.94 3.41
5948 8040 4.142609 ACGCAGTATGATTGACTCCATT 57.857 40.909 0.00 0.00 41.94 3.16
5949 8041 4.517285 ACGCAGTATGATTGACTCCATTT 58.483 39.130 0.00 0.00 41.94 2.32
5950 8042 4.572389 ACGCAGTATGATTGACTCCATTTC 59.428 41.667 0.00 0.00 41.94 2.17
5951 8043 4.024556 CGCAGTATGATTGACTCCATTTCC 60.025 45.833 0.00 0.00 39.69 3.13
5952 8044 4.024556 GCAGTATGATTGACTCCATTTCCG 60.025 45.833 0.00 0.00 39.69 4.30
5953 8045 5.118990 CAGTATGATTGACTCCATTTCCGT 58.881 41.667 0.00 0.00 39.69 4.69
5954 8046 6.280643 CAGTATGATTGACTCCATTTCCGTA 58.719 40.000 0.00 0.00 39.69 4.02
5955 8047 6.931281 CAGTATGATTGACTCCATTTCCGTAT 59.069 38.462 0.00 0.00 39.69 3.06
6033 8145 4.274147 TCAAGTGTAGGAAGCACCAAAAA 58.726 39.130 2.96 0.00 42.04 1.94
6034 8146 4.892934 TCAAGTGTAGGAAGCACCAAAAAT 59.107 37.500 2.96 0.00 42.04 1.82
6035 8147 6.065374 TCAAGTGTAGGAAGCACCAAAAATA 58.935 36.000 2.96 0.00 42.04 1.40
6037 8149 5.010282 AGTGTAGGAAGCACCAAAAATAGG 58.990 41.667 2.96 0.00 42.04 2.57
6041 8153 3.506067 AGGAAGCACCAAAAATAGGTTCG 59.494 43.478 2.96 0.00 42.04 3.95
6048 8160 5.401376 GCACCAAAAATAGGTTCGAAACTTC 59.599 40.000 22.86 0.00 37.23 3.01
6149 8264 7.940850 TGGAAAAGCAGCTGGAATTTATATAC 58.059 34.615 17.12 0.00 0.00 1.47
6150 8265 7.779798 TGGAAAAGCAGCTGGAATTTATATACT 59.220 33.333 17.12 0.00 0.00 2.12
6151 8266 8.293157 GGAAAAGCAGCTGGAATTTATATACTC 58.707 37.037 17.12 0.00 0.00 2.59
6152 8267 7.751768 AAAGCAGCTGGAATTTATATACTCC 57.248 36.000 17.12 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.424227 TGTTGAAAGATTTTGGCAAATGATC 57.576 32.000 14.29 14.18 32.35 2.92
34 35 7.776969 AGCATCCTAGTATCACAATTTTCATGT 59.223 33.333 0.00 0.00 0.00 3.21
39 40 6.662755 TCCAGCATCCTAGTATCACAATTTT 58.337 36.000 0.00 0.00 0.00 1.82
51 52 6.944290 TGAATCCAAATATTCCAGCATCCTAG 59.056 38.462 0.00 0.00 35.40 3.02
87 88 6.969993 TGGTTGTATGGCTCTAAAAACTTT 57.030 33.333 0.00 0.00 0.00 2.66
89 90 5.243060 GGTTGGTTGTATGGCTCTAAAAACT 59.757 40.000 0.00 0.00 0.00 2.66
114 115 4.786425 AGGAAATATCTCCAAGCCTGAAC 58.214 43.478 0.00 0.00 38.02 3.18
131 132 4.348168 AGCTTGAGGTCTACTTTGAGGAAA 59.652 41.667 0.00 0.00 0.00 3.13
142 143 3.769739 TTTGAAGCAGCTTGAGGTCTA 57.230 42.857 13.91 0.00 0.00 2.59
145 146 2.867624 TGATTTGAAGCAGCTTGAGGT 58.132 42.857 13.91 0.00 0.00 3.85
147 148 7.878477 TTATTTTGATTTGAAGCAGCTTGAG 57.122 32.000 13.91 0.00 0.00 3.02
150 151 8.891671 TCTTTTATTTTGATTTGAAGCAGCTT 57.108 26.923 7.60 7.60 0.00 3.74
162 163 7.758528 GTCTGCATGCTTCTCTTTTATTTTGAT 59.241 33.333 20.33 0.00 0.00 2.57
181 182 2.839486 TCGGTGAAAAGAGTCTGCAT 57.161 45.000 0.00 0.00 0.00 3.96
186 187 5.012328 ACTATCCATCGGTGAAAAGAGTC 57.988 43.478 0.00 0.00 0.00 3.36
289 296 9.927668 ATGTTACAAAGTGGGATGAATAAAAAG 57.072 29.630 0.00 0.00 0.00 2.27
294 301 8.731275 CAGTATGTTACAAAGTGGGATGAATA 57.269 34.615 0.00 0.00 0.00 1.75
338 345 8.113173 ACCGTAGAACAATTATTTTAAGGCAA 57.887 30.769 0.00 0.00 0.00 4.52
340 347 8.856247 CAAACCGTAGAACAATTATTTTAAGGC 58.144 33.333 0.00 0.00 0.00 4.35
351 358 1.161843 CCCGCAAACCGTAGAACAAT 58.838 50.000 0.00 0.00 34.38 2.71
368 375 4.817318 TGGAAGGCATAATTTTTGACCC 57.183 40.909 0.00 0.00 0.00 4.46
372 379 7.820872 ACAGAAGATTGGAAGGCATAATTTTTG 59.179 33.333 0.00 0.00 0.00 2.44
384 391 7.025963 GCATGAGTAAAACAGAAGATTGGAAG 58.974 38.462 0.00 0.00 0.00 3.46
393 400 3.126858 GCATCGGCATGAGTAAAACAGAA 59.873 43.478 0.00 0.00 40.72 3.02
397 404 1.396996 ACGCATCGGCATGAGTAAAAC 59.603 47.619 0.00 0.00 40.89 2.43
399 406 1.663643 GAACGCATCGGCATGAGTAAA 59.336 47.619 0.00 0.00 41.75 2.01
406 413 1.164411 TGAAAAGAACGCATCGGCAT 58.836 45.000 0.00 0.00 41.24 4.40
410 417 4.070581 AGAACATGAAAAGAACGCATCG 57.929 40.909 0.00 0.00 0.00 3.84
412 419 5.186996 ACAAGAACATGAAAAGAACGCAT 57.813 34.783 0.00 0.00 0.00 4.73
414 421 6.142817 ACATACAAGAACATGAAAAGAACGC 58.857 36.000 0.00 0.00 0.00 4.84
415 422 8.560576 AAACATACAAGAACATGAAAAGAACG 57.439 30.769 0.00 0.00 0.00 3.95
417 424 9.528018 GGAAAACATACAAGAACATGAAAAGAA 57.472 29.630 0.00 0.00 0.00 2.52
418 425 8.141268 GGGAAAACATACAAGAACATGAAAAGA 58.859 33.333 0.00 0.00 0.00 2.52
419 426 8.143835 AGGGAAAACATACAAGAACATGAAAAG 58.856 33.333 0.00 0.00 0.00 2.27
420 427 8.017418 AGGGAAAACATACAAGAACATGAAAA 57.983 30.769 0.00 0.00 0.00 2.29
424 431 7.219484 AGAAGGGAAAACATACAAGAACATG 57.781 36.000 0.00 0.00 0.00 3.21
425 432 9.533831 AATAGAAGGGAAAACATACAAGAACAT 57.466 29.630 0.00 0.00 0.00 2.71
428 435 9.807921 AGAAATAGAAGGGAAAACATACAAGAA 57.192 29.630 0.00 0.00 0.00 2.52
450 457 3.991773 GCGCGGGATACAACATATAGAAA 59.008 43.478 8.83 0.00 39.74 2.52
455 462 0.669318 CGGCGCGGGATACAACATAT 60.669 55.000 8.83 0.00 39.74 1.78
456 463 1.300311 CGGCGCGGGATACAACATA 60.300 57.895 8.83 0.00 39.74 2.29
458 465 2.581208 ATTCGGCGCGGGATACAACA 62.581 55.000 15.48 0.00 39.74 3.33
459 466 0.598158 TATTCGGCGCGGGATACAAC 60.598 55.000 15.48 0.00 39.74 3.32
460 467 0.104487 TTATTCGGCGCGGGATACAA 59.896 50.000 14.99 1.58 39.74 2.41
462 469 1.623973 GCTTATTCGGCGCGGGATAC 61.624 60.000 14.99 2.19 0.00 2.24
513 598 8.709308 AGACATGTATGACTAAGAATAAAGGCT 58.291 33.333 0.00 0.00 31.33 4.58
515 600 9.186323 CGAGACATGTATGACTAAGAATAAAGG 57.814 37.037 0.00 0.00 33.18 3.11
519 604 9.774413 TCTACGAGACATGTATGACTAAGAATA 57.226 33.333 0.00 0.00 33.18 1.75
520 605 8.678593 TCTACGAGACATGTATGACTAAGAAT 57.321 34.615 0.00 0.00 33.18 2.40
521 606 8.502105 TTCTACGAGACATGTATGACTAAGAA 57.498 34.615 0.00 0.00 33.18 2.52
522 607 7.769507 ACTTCTACGAGACATGTATGACTAAGA 59.230 37.037 0.00 0.00 33.18 2.10
524 609 7.860918 ACTTCTACGAGACATGTATGACTAA 57.139 36.000 0.00 0.00 33.18 2.24
525 610 7.860918 AACTTCTACGAGACATGTATGACTA 57.139 36.000 0.00 0.00 33.18 2.59
526 611 6.761099 AACTTCTACGAGACATGTATGACT 57.239 37.500 0.00 0.00 35.60 3.41
528 613 7.375834 ACAAAACTTCTACGAGACATGTATGA 58.624 34.615 0.00 0.00 0.00 2.15
529 614 7.582435 ACAAAACTTCTACGAGACATGTATG 57.418 36.000 0.00 0.00 0.00 2.39
530 615 8.301720 TGTACAAAACTTCTACGAGACATGTAT 58.698 33.333 0.00 0.00 0.00 2.29
531 616 7.650890 TGTACAAAACTTCTACGAGACATGTA 58.349 34.615 0.00 0.00 0.00 2.29
533 618 6.641314 ACTGTACAAAACTTCTACGAGACATG 59.359 38.462 0.00 0.00 0.00 3.21
537 622 7.009815 CACAAACTGTACAAAACTTCTACGAGA 59.990 37.037 0.00 0.00 0.00 4.04
544 629 4.678622 CCCCACAAACTGTACAAAACTTC 58.321 43.478 0.00 0.00 0.00 3.01
549 634 1.404843 GGCCCCACAAACTGTACAAA 58.595 50.000 0.00 0.00 0.00 2.83
558 643 1.462928 CTAACCAGGGCCCCACAAA 59.537 57.895 21.43 0.00 0.00 2.83
560 645 3.657350 GCTAACCAGGGCCCCACA 61.657 66.667 21.43 0.00 0.00 4.17
564 649 1.152881 CTGATGCTAACCAGGGCCC 60.153 63.158 16.46 16.46 0.00 5.80
642 734 7.230712 AGGTGAAAACGAGAGGTGATTTTATTT 59.769 33.333 0.00 0.00 0.00 1.40
644 736 6.149474 CAGGTGAAAACGAGAGGTGATTTTAT 59.851 38.462 0.00 0.00 0.00 1.40
645 737 5.468746 CAGGTGAAAACGAGAGGTGATTTTA 59.531 40.000 0.00 0.00 0.00 1.52
720 820 0.527565 CCTTGCCATTCCGTCCAAAG 59.472 55.000 0.00 0.00 0.00 2.77
723 823 2.361104 GCCTTGCCATTCCGTCCA 60.361 61.111 0.00 0.00 0.00 4.02
900 1004 1.770110 TGGGCTGTGGGTCAGAGTT 60.770 57.895 0.00 0.00 46.27 3.01
934 1038 2.092429 ACATGTGGGCCACGAAATCTAT 60.092 45.455 30.14 14.35 37.14 1.98
957 1061 2.034879 CAGTCACATCACGGCCACC 61.035 63.158 2.24 0.00 0.00 4.61
959 1063 0.602638 GAACAGTCACATCACGGCCA 60.603 55.000 2.24 0.00 0.00 5.36
963 1067 0.784178 CACGGAACAGTCACATCACG 59.216 55.000 0.00 0.00 0.00 4.35
965 1069 1.601914 CGTCACGGAACAGTCACATCA 60.602 52.381 0.00 0.00 0.00 3.07
1011 1115 3.460857 ACGACGGTACTAGTAGTAGGG 57.539 52.381 10.38 7.92 30.12 3.53
1092 1196 2.125326 CCCGGGCTCTATCGTCACA 61.125 63.158 8.08 0.00 0.00 3.58
1094 1198 1.528542 CTCCCGGGCTCTATCGTCA 60.529 63.158 18.49 0.00 0.00 4.35
1312 1416 1.673665 GCACAGGGGACAGCAGAAG 60.674 63.158 0.00 0.00 0.00 2.85
1525 1629 5.063017 AGATCAGATCAGGGCAATCAAAT 57.937 39.130 13.14 0.00 0.00 2.32
1578 1682 1.720805 CGACATCGATGGGTCAAACA 58.279 50.000 28.09 0.00 43.02 2.83
1587 1691 0.772926 GTAAGCTCGCGACATCGATG 59.227 55.000 23.68 23.68 43.02 3.84
1726 1830 6.073112 GCAAATCCAGTGTACTAAACGGTAAA 60.073 38.462 0.00 0.00 0.00 2.01
1890 1995 1.469703 CATGACTCCGCAAATTCAGCA 59.530 47.619 4.07 0.00 0.00 4.41
1983 2098 9.589111 TTGAACTTTTCAAAAATTACCAGTACC 57.411 29.630 0.00 0.00 45.94 3.34
2044 2159 0.539051 ACATGAGAGCTAGCCACACC 59.461 55.000 12.13 3.44 0.00 4.16
2074 3320 5.049405 GTGGGAGTTAGATGTGACTTTGTTG 60.049 44.000 0.00 0.00 0.00 3.33
2178 3685 5.010922 TCACAAAAGTTGGATTAGCAGCAAT 59.989 36.000 0.00 0.00 34.12 3.56
2209 3716 5.287992 CGCTATGTGCTGTATATGATGTCAG 59.712 44.000 0.00 0.00 40.11 3.51
2265 3772 1.338136 AATCCCCACGAATCTCCGCT 61.338 55.000 0.00 0.00 0.00 5.52
2363 3870 6.522855 TCGCAAAACTGACAAAATGATAATCG 59.477 34.615 0.00 0.00 0.00 3.34
2366 3873 6.964908 TCTCGCAAAACTGACAAAATGATAA 58.035 32.000 0.00 0.00 0.00 1.75
2474 3990 7.872163 TCAACACATGCAAGTGATAAATTTC 57.128 32.000 27.42 0.00 42.05 2.17
2508 4024 5.289434 GCAATGCAAGTCTAGGTAATTTTGC 59.711 40.000 0.00 0.00 40.81 3.68
2587 4103 9.065871 CACATTAGGAAAATTCATTTCGTCTTC 57.934 33.333 0.02 0.00 46.93 2.87
2630 4146 2.159156 TCAAGTTATCACCCGGACGATG 60.159 50.000 0.73 0.00 0.00 3.84
2842 4358 6.174049 GGCAAGAGTTCAGTATCTTACCTTT 58.826 40.000 0.00 0.00 36.44 3.11
2845 4361 5.086104 TGGCAAGAGTTCAGTATCTTACC 57.914 43.478 0.00 0.00 38.81 2.85
2980 4496 3.569701 TGTTTGCAGGATTTGAAGACTCC 59.430 43.478 0.00 0.00 0.00 3.85
3063 4579 5.071788 TGAGTGAGTATTCTCCAACCAAGTT 59.928 40.000 0.00 0.00 39.75 2.66
3283 4799 6.823182 TCACAAATACATGTCATAGGTCAAGG 59.177 38.462 0.00 0.00 0.00 3.61
3386 4902 0.965866 TCCTACCAGAGTGACTGCCG 60.966 60.000 0.00 0.00 44.52 5.69
3428 4944 0.905357 CCACCCCTACAACCTGAGAG 59.095 60.000 0.00 0.00 0.00 3.20
3500 5030 3.506312 CTCTCTCTCTCTCGCGCGC 62.506 68.421 27.95 23.91 0.00 6.86
3501 5031 2.625906 CTCTCTCTCTCTCGCGCG 59.374 66.667 26.76 26.76 0.00 6.86
3502 5032 2.327940 GCTCTCTCTCTCTCGCGC 59.672 66.667 0.00 0.00 0.00 6.86
3503 5033 1.643292 CTGCTCTCTCTCTCTCGCG 59.357 63.158 0.00 0.00 0.00 5.87
3504 5034 1.447317 CCCTGCTCTCTCTCTCTCGC 61.447 65.000 0.00 0.00 0.00 5.03
3505 5035 0.819259 CCCCTGCTCTCTCTCTCTCG 60.819 65.000 0.00 0.00 0.00 4.04
3506 5036 1.109323 GCCCCTGCTCTCTCTCTCTC 61.109 65.000 0.00 0.00 33.53 3.20
3507 5037 1.076044 GCCCCTGCTCTCTCTCTCT 60.076 63.158 0.00 0.00 33.53 3.10
3662 5192 3.804036 TGTGGCCCAGTTTATCTTATCG 58.196 45.455 0.00 0.00 0.00 2.92
3663 5193 5.193679 AGTTGTGGCCCAGTTTATCTTATC 58.806 41.667 0.00 0.00 0.00 1.75
3676 5206 1.977009 GCCCAGTTAGTTGTGGCCC 60.977 63.158 0.00 0.00 36.07 5.80
3724 5254 8.974060 ACTCTACTACTCTATCAAGGAAAGAG 57.026 38.462 0.00 0.00 42.04 2.85
3725 5255 9.835389 GTACTCTACTACTCTATCAAGGAAAGA 57.165 37.037 0.00 0.00 0.00 2.52
3726 5256 9.059260 GGTACTCTACTACTCTATCAAGGAAAG 57.941 40.741 0.00 0.00 0.00 2.62
3727 5257 8.554870 TGGTACTCTACTACTCTATCAAGGAAA 58.445 37.037 0.00 0.00 0.00 3.13
3735 5265 9.850198 CCTTAACTTGGTACTCTACTACTCTAT 57.150 37.037 0.00 0.00 0.00 1.98
3792 5322 7.129457 TCAAGTCTCAGATACCAAATAGCAT 57.871 36.000 0.00 0.00 0.00 3.79
3895 5425 8.424918 GGTTCCAAATATGAAGATACAGAGAGA 58.575 37.037 0.00 0.00 0.00 3.10
3898 5428 8.970859 AAGGTTCCAAATATGAAGATACAGAG 57.029 34.615 0.00 0.00 0.00 3.35
3906 5436 7.972277 CAGATGTTGAAGGTTCCAAATATGAAG 59.028 37.037 0.00 0.00 0.00 3.02
4438 5968 8.775527 GCAAATAGGCTCTATAAAAGGTCTTAC 58.224 37.037 0.00 0.00 0.00 2.34
4443 5973 5.532779 GCAGCAAATAGGCTCTATAAAAGGT 59.467 40.000 0.00 0.00 43.68 3.50
4446 5976 4.827284 GGGCAGCAAATAGGCTCTATAAAA 59.173 41.667 0.00 0.00 43.68 1.52
4447 5977 4.141274 TGGGCAGCAAATAGGCTCTATAAA 60.141 41.667 0.00 0.00 43.68 1.40
4458 6038 2.094803 CACGTCAAATGGGCAGCAAATA 60.095 45.455 0.00 0.00 0.00 1.40
4521 6101 3.631145 TGCAAGAAACAGAAGCATGTC 57.369 42.857 0.00 0.00 31.50 3.06
4562 6143 0.603569 ACACTAAGCTCCGTCACTGG 59.396 55.000 0.00 0.00 0.00 4.00
4677 6259 1.212935 GGGGCAGCCTCAAGAGATTAA 59.787 52.381 12.43 0.00 0.00 1.40
4716 6298 4.534141 AACGGTCGGTGCAACGGT 62.534 61.111 26.21 11.92 38.12 4.83
4761 6343 2.481289 AGCTAGAAGTGGCTTCCAAC 57.519 50.000 0.00 0.00 37.13 3.77
4780 6362 9.638239 GAATTTGAACATGCTTATAAGGTCAAA 57.362 29.630 14.28 14.39 0.00 2.69
4855 6445 7.860918 ACATCAGTCACTTATTACGAGTAGA 57.139 36.000 0.00 0.00 0.00 2.59
4939 6555 6.903419 GCAAATGCAGAGGTAGGATATTTAC 58.097 40.000 0.00 0.00 41.59 2.01
5032 6649 3.237628 GGATTTTCTTTGCTGTCTTCGC 58.762 45.455 0.00 0.00 0.00 4.70
5052 6669 2.880890 CTCTTGGAACTTCTGGTTGTGG 59.119 50.000 0.00 0.00 38.41 4.17
5326 6943 0.384669 CATCGTCTAGACCCGGGAAC 59.615 60.000 32.02 20.68 0.00 3.62
5473 7096 3.119637 GCAGGTTCTCAGTACAGAGAGAC 60.120 52.174 16.41 15.97 44.78 3.36
5573 7638 1.879380 CCACAAGAATTCCGCTGAACA 59.121 47.619 0.65 0.00 32.13 3.18
5629 7694 6.772716 ACAAGTACTGATTCACCACAAGAAAT 59.227 34.615 0.00 0.00 0.00 2.17
5734 7799 9.599866 CCTTTTTCTTAACATTTCTTCACCTTT 57.400 29.630 0.00 0.00 0.00 3.11
5735 7800 8.204160 CCCTTTTTCTTAACATTTCTTCACCTT 58.796 33.333 0.00 0.00 0.00 3.50
5736 7801 7.344612 ACCCTTTTTCTTAACATTTCTTCACCT 59.655 33.333 0.00 0.00 0.00 4.00
5737 7802 7.438160 CACCCTTTTTCTTAACATTTCTTCACC 59.562 37.037 0.00 0.00 0.00 4.02
5738 7803 8.194769 TCACCCTTTTTCTTAACATTTCTTCAC 58.805 33.333 0.00 0.00 0.00 3.18
5739 7804 8.299990 TCACCCTTTTTCTTAACATTTCTTCA 57.700 30.769 0.00 0.00 0.00 3.02
5740 7805 9.249457 CTTCACCCTTTTTCTTAACATTTCTTC 57.751 33.333 0.00 0.00 0.00 2.87
5741 7806 8.977412 TCTTCACCCTTTTTCTTAACATTTCTT 58.023 29.630 0.00 0.00 0.00 2.52
5742 7807 8.533569 TCTTCACCCTTTTTCTTAACATTTCT 57.466 30.769 0.00 0.00 0.00 2.52
5743 7808 9.594478 TTTCTTCACCCTTTTTCTTAACATTTC 57.406 29.630 0.00 0.00 0.00 2.17
5755 7820 9.244292 GGTCTATTCTTATTTCTTCACCCTTTT 57.756 33.333 0.00 0.00 0.00 2.27
5794 7859 5.277202 CGAACTTGCAATCAGGATCTATGTG 60.277 44.000 0.00 0.00 0.00 3.21
5928 7994 4.024556 GGAAATGGAGTCAATCATACTGCG 60.025 45.833 0.00 0.00 38.06 5.18
5935 8027 4.881273 CCAATACGGAAATGGAGTCAATCA 59.119 41.667 0.00 0.00 36.27 2.57
5936 8028 5.123227 TCCAATACGGAAATGGAGTCAATC 58.877 41.667 1.48 0.00 42.52 2.67
5937 8029 5.110814 TCCAATACGGAAATGGAGTCAAT 57.889 39.130 1.48 0.00 42.52 2.57
5938 8030 4.561500 TCCAATACGGAAATGGAGTCAA 57.438 40.909 1.48 0.00 42.52 3.18
5949 8041 1.213430 GACCCCCATTTCCAATACGGA 59.787 52.381 0.00 0.00 44.40 4.69
5950 8042 1.687563 GACCCCCATTTCCAATACGG 58.312 55.000 0.00 0.00 0.00 4.02
5951 8043 1.305201 CGACCCCCATTTCCAATACG 58.695 55.000 0.00 0.00 0.00 3.06
5952 8044 2.021457 CACGACCCCCATTTCCAATAC 58.979 52.381 0.00 0.00 0.00 1.89
5953 8045 1.636519 ACACGACCCCCATTTCCAATA 59.363 47.619 0.00 0.00 0.00 1.90
5954 8046 0.407918 ACACGACCCCCATTTCCAAT 59.592 50.000 0.00 0.00 0.00 3.16
5955 8047 0.538516 CACACGACCCCCATTTCCAA 60.539 55.000 0.00 0.00 0.00 3.53
6041 8153 7.595130 ACTTTGATTATTGGCTTTCGAAGTTTC 59.405 33.333 0.00 0.00 38.91 2.78
6048 8160 5.123820 TCTCCACTTTGATTATTGGCTTTCG 59.876 40.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.