Multiple sequence alignment - TraesCS2D01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G319100 chr2D 100.000 6220 0 0 1 6220 409577346 409583565 0.000000e+00 11487.0
1 TraesCS2D01G319100 chr2D 74.803 1143 237 39 4048 5163 407980930 407982048 9.440000e-128 468.0
2 TraesCS2D01G319100 chr2D 78.899 327 65 4 1230 1554 407973721 407974045 1.050000e-52 219.0
3 TraesCS2D01G319100 chr2A 96.860 1497 35 4 4035 5527 578121000 578122488 0.000000e+00 2494.0
4 TraesCS2D01G319100 chr2A 95.143 947 41 1 845 1791 578117643 578118584 0.000000e+00 1489.0
5 TraesCS2D01G319100 chr2A 91.190 647 34 11 2571 3211 578119698 578120327 0.000000e+00 857.0
6 TraesCS2D01G319100 chr2A 89.821 560 37 13 2023 2576 578118956 578119501 0.000000e+00 701.0
7 TraesCS2D01G319100 chr2A 92.978 356 15 7 1 348 196127834 196127481 1.550000e-140 510.0
8 TraesCS2D01G319100 chr2A 77.240 558 115 10 4048 4599 575693534 575694085 3.620000e-82 316.0
9 TraesCS2D01G319100 chr2A 91.905 210 9 5 3211 3412 578120611 578120820 2.840000e-73 287.0
10 TraesCS2D01G319100 chr2A 90.361 166 12 3 2 167 88279771 88279610 1.360000e-51 215.0
11 TraesCS2D01G319100 chr2A 79.433 141 25 4 1000 1138 575685905 575686043 5.130000e-16 97.1
12 TraesCS2D01G319100 chr2B 95.146 1504 52 8 4037 5527 484594506 484596001 0.000000e+00 2353.0
13 TraesCS2D01G319100 chr2B 94.280 944 45 6 845 1779 484591220 484592163 0.000000e+00 1435.0
14 TraesCS2D01G319100 chr2B 87.888 644 56 12 5596 6220 672576277 672576917 0.000000e+00 737.0
15 TraesCS2D01G319100 chr2B 90.196 561 38 7 2023 2576 484592331 484592881 0.000000e+00 715.0
16 TraesCS2D01G319100 chr2B 85.692 629 70 19 236 852 187168191 187167571 0.000000e+00 645.0
17 TraesCS2D01G319100 chr2B 75.000 1156 240 38 4045 5174 483468667 483469799 7.250000e-134 488.0
18 TraesCS2D01G319100 chr2B 95.486 288 12 1 3125 3412 484593493 484593779 5.680000e-125 459.0
19 TraesCS2D01G319100 chr2B 87.547 265 14 7 2882 3129 484593073 484593335 7.890000e-74 289.0
20 TraesCS2D01G319100 chr2B 84.426 244 28 7 3660 3903 485682015 485682248 1.350000e-56 231.0
21 TraesCS2D01G319100 chr2B 86.559 186 11 7 5535 5706 13307175 13306990 6.360000e-45 193.0
22 TraesCS2D01G319100 chr2B 93.130 131 9 0 3523 3653 51891498 51891368 6.360000e-45 193.0
23 TraesCS2D01G319100 chr2B 79.286 140 27 2 1000 1138 483463488 483463626 5.130000e-16 97.1
24 TraesCS2D01G319100 chr2B 94.118 51 3 0 1791 1841 484592288 484592338 1.860000e-10 78.7
25 TraesCS2D01G319100 chr5D 91.647 838 47 10 1 829 21671223 21672046 0.000000e+00 1138.0
26 TraesCS2D01G319100 chr5D 94.970 676 21 7 5556 6220 56055673 56055000 0.000000e+00 1048.0
27 TraesCS2D01G319100 chr5D 94.565 184 9 1 1840 2023 30728818 30728636 3.670000e-72 283.0
28 TraesCS2D01G319100 chr5D 83.333 264 35 6 3641 3902 63541450 63541194 1.040000e-57 235.0
29 TraesCS2D01G319100 chr6D 95.136 699 21 7 5535 6220 85507160 85507858 0.000000e+00 1090.0
30 TraesCS2D01G319100 chr6D 93.539 681 22 7 5551 6220 428947472 428946803 0.000000e+00 994.0
31 TraesCS2D01G319100 chr6D 90.909 198 17 1 1834 2030 316230430 316230233 1.330000e-66 265.0
32 TraesCS2D01G319100 chr6D 93.893 131 6 2 3524 3653 332501515 332501386 4.920000e-46 196.0
33 TraesCS2D01G319100 chr3D 95.159 661 18 7 5572 6220 614651286 614651944 0.000000e+00 1031.0
34 TraesCS2D01G319100 chr3D 81.385 462 39 26 5532 5959 152784662 152785110 3.590000e-87 333.0
35 TraesCS2D01G319100 chr3D 93.011 186 11 2 1841 2026 429728324 429728141 2.860000e-68 270.0
36 TraesCS2D01G319100 chr3B 91.679 685 37 12 5554 6220 526044177 526044859 0.000000e+00 931.0
37 TraesCS2D01G319100 chr3B 90.593 691 36 11 5547 6220 135712831 135713509 0.000000e+00 889.0
38 TraesCS2D01G319100 chr4B 90.028 712 42 18 5532 6220 584135486 584136191 0.000000e+00 894.0
39 TraesCS2D01G319100 chr4B 92.806 139 10 0 3516 3654 89385950 89386088 1.060000e-47 202.0
40 TraesCS2D01G319100 chr7D 90.557 646 39 10 5594 6220 9274603 9275245 0.000000e+00 835.0
41 TraesCS2D01G319100 chr7D 95.580 181 7 1 1842 2022 574065520 574065699 7.890000e-74 289.0
42 TraesCS2D01G319100 chr7D 92.746 193 12 2 1840 2030 161459058 161459250 1.710000e-70 278.0
43 TraesCS2D01G319100 chr1A 87.165 709 70 12 1 691 551507944 551507239 0.000000e+00 785.0
44 TraesCS2D01G319100 chr1A 85.795 711 67 16 5531 6220 517704977 517705674 0.000000e+00 723.0
45 TraesCS2D01G319100 chr1A 84.724 635 80 15 219 843 551508720 551509347 2.460000e-173 619.0
46 TraesCS2D01G319100 chr6A 87.302 693 47 12 5553 6220 83441123 83441799 0.000000e+00 754.0
47 TraesCS2D01G319100 chr6A 84.235 647 84 15 209 844 500295389 500296028 1.150000e-171 614.0
48 TraesCS2D01G319100 chr6A 84.080 647 85 15 209 844 89198146 89197507 5.330000e-170 608.0
49 TraesCS2D01G319100 chr6A 85.537 242 28 5 3662 3901 506508415 506508179 4.820000e-61 246.0
50 TraesCS2D01G319100 chr6A 84.836 244 30 5 3661 3902 550253342 550253104 8.060000e-59 239.0
51 TraesCS2D01G319100 chr6A 84.298 242 33 5 3662 3902 520435020 520435257 1.350000e-56 231.0
52 TraesCS2D01G319100 chr7A 86.427 722 48 22 5531 6220 586344246 586343543 0.000000e+00 745.0
53 TraesCS2D01G319100 chr7A 88.587 368 35 6 2 365 675461793 675462157 2.060000e-119 440.0
54 TraesCS2D01G319100 chr7A 92.593 189 10 4 1841 2026 730830674 730830861 1.030000e-67 268.0
55 TraesCS2D01G319100 chr7A 83.936 249 35 2 3657 3903 424628694 424628939 3.750000e-57 233.0
56 TraesCS2D01G319100 chr4D 86.854 639 72 10 215 845 152600847 152601481 0.000000e+00 704.0
57 TraesCS2D01G319100 chr4D 92.268 194 9 3 1841 2030 102535229 102535420 2.860000e-68 270.0
58 TraesCS2D01G319100 chr7B 84.900 649 78 16 209 844 71270250 71269609 6.800000e-179 638.0
59 TraesCS2D01G319100 chr7B 84.531 640 76 17 219 843 675872033 675872664 4.120000e-171 612.0
60 TraesCS2D01G319100 chr7B 84.739 249 14 5 2 249 649443558 649443333 1.740000e-55 228.0
61 TraesCS2D01G319100 chr7B 84.252 254 16 5 2 254 649455725 649455495 6.270000e-55 226.0
62 TraesCS2D01G319100 chr7B 91.946 149 9 2 3525 3673 48470425 48470280 8.170000e-49 206.0
63 TraesCS2D01G319100 chr7B 88.189 127 10 3 131 254 641594076 641593952 5.020000e-31 147.0
64 TraesCS2D01G319100 chr6B 84.568 648 79 19 209 844 409624564 409623926 1.900000e-174 623.0
65 TraesCS2D01G319100 chr6B 84.146 246 32 5 3661 3903 356117210 356117451 1.350000e-56 231.0
66 TraesCS2D01G319100 chrUn 90.596 436 19 14 1 419 215029154 215029584 5.450000e-155 558.0
67 TraesCS2D01G319100 chrUn 83.740 246 28 7 3659 3902 83938604 83938369 8.120000e-54 222.0
68 TraesCS2D01G319100 chr5A 84.444 585 51 18 5532 6087 579167368 579167941 1.970000e-149 540.0
69 TraesCS2D01G319100 chr5B 89.421 397 25 10 5531 5915 590089332 590089723 9.370000e-133 484.0
70 TraesCS2D01G319100 chr5B 84.091 264 34 6 3643 3902 477556994 477556735 1.340000e-61 248.0
71 TraesCS2D01G319100 chr5B 87.568 185 8 8 5535 5707 697922567 697922748 3.800000e-47 200.0
72 TraesCS2D01G319100 chr5B 92.754 138 8 2 3527 3664 262477323 262477188 1.370000e-46 198.0
73 TraesCS2D01G319100 chr5B 94.488 127 7 0 3527 3653 366076788 366076662 4.920000e-46 196.0
74 TraesCS2D01G319100 chr5B 88.976 127 9 3 131 254 666896612 666896736 1.080000e-32 152.0
75 TraesCS2D01G319100 chr1D 91.500 200 14 2 1835 2031 41446434 41446235 7.950000e-69 272.0
76 TraesCS2D01G319100 chr1D 93.923 181 10 1 1843 2023 51783404 51783583 7.950000e-69 272.0
77 TraesCS2D01G319100 chr1D 96.875 128 4 0 3527 3654 271837164 271837037 1.360000e-51 215.0
78 TraesCS2D01G319100 chr3A 94.615 130 7 0 3524 3653 468726801 468726672 1.060000e-47 202.0
79 TraesCS2D01G319100 chr3A 86.232 138 12 5 120 254 687135917 687135784 6.500000e-30 143.0
80 TraesCS2D01G319100 chr1B 92.593 135 10 0 3519 3653 49562798 49562932 1.770000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G319100 chr2D 409577346 409583565 6219 False 11487.000000 11487 100.0000 1 6220 1 chr2D.!!$F3 6219
1 TraesCS2D01G319100 chr2D 407980930 407982048 1118 False 468.000000 468 74.8030 4048 5163 1 chr2D.!!$F2 1115
2 TraesCS2D01G319100 chr2A 578117643 578122488 4845 False 1165.600000 2494 92.9838 845 5527 5 chr2A.!!$F3 4682
3 TraesCS2D01G319100 chr2A 575693534 575694085 551 False 316.000000 316 77.2400 4048 4599 1 chr2A.!!$F2 551
4 TraesCS2D01G319100 chr2B 484591220 484596001 4781 False 888.283333 2353 92.7955 845 5527 6 chr2B.!!$F5 4682
5 TraesCS2D01G319100 chr2B 672576277 672576917 640 False 737.000000 737 87.8880 5596 6220 1 chr2B.!!$F4 624
6 TraesCS2D01G319100 chr2B 187167571 187168191 620 True 645.000000 645 85.6920 236 852 1 chr2B.!!$R3 616
7 TraesCS2D01G319100 chr2B 483468667 483469799 1132 False 488.000000 488 75.0000 4045 5174 1 chr2B.!!$F2 1129
8 TraesCS2D01G319100 chr5D 21671223 21672046 823 False 1138.000000 1138 91.6470 1 829 1 chr5D.!!$F1 828
9 TraesCS2D01G319100 chr5D 56055000 56055673 673 True 1048.000000 1048 94.9700 5556 6220 1 chr5D.!!$R2 664
10 TraesCS2D01G319100 chr6D 85507160 85507858 698 False 1090.000000 1090 95.1360 5535 6220 1 chr6D.!!$F1 685
11 TraesCS2D01G319100 chr6D 428946803 428947472 669 True 994.000000 994 93.5390 5551 6220 1 chr6D.!!$R3 669
12 TraesCS2D01G319100 chr3D 614651286 614651944 658 False 1031.000000 1031 95.1590 5572 6220 1 chr3D.!!$F2 648
13 TraesCS2D01G319100 chr3B 526044177 526044859 682 False 931.000000 931 91.6790 5554 6220 1 chr3B.!!$F2 666
14 TraesCS2D01G319100 chr3B 135712831 135713509 678 False 889.000000 889 90.5930 5547 6220 1 chr3B.!!$F1 673
15 TraesCS2D01G319100 chr4B 584135486 584136191 705 False 894.000000 894 90.0280 5532 6220 1 chr4B.!!$F2 688
16 TraesCS2D01G319100 chr7D 9274603 9275245 642 False 835.000000 835 90.5570 5594 6220 1 chr7D.!!$F1 626
17 TraesCS2D01G319100 chr1A 551507239 551507944 705 True 785.000000 785 87.1650 1 691 1 chr1A.!!$R1 690
18 TraesCS2D01G319100 chr1A 517704977 517705674 697 False 723.000000 723 85.7950 5531 6220 1 chr1A.!!$F1 689
19 TraesCS2D01G319100 chr1A 551508720 551509347 627 False 619.000000 619 84.7240 219 843 1 chr1A.!!$F2 624
20 TraesCS2D01G319100 chr6A 83441123 83441799 676 False 754.000000 754 87.3020 5553 6220 1 chr6A.!!$F1 667
21 TraesCS2D01G319100 chr6A 500295389 500296028 639 False 614.000000 614 84.2350 209 844 1 chr6A.!!$F2 635
22 TraesCS2D01G319100 chr6A 89197507 89198146 639 True 608.000000 608 84.0800 209 844 1 chr6A.!!$R1 635
23 TraesCS2D01G319100 chr7A 586343543 586344246 703 True 745.000000 745 86.4270 5531 6220 1 chr7A.!!$R1 689
24 TraesCS2D01G319100 chr4D 152600847 152601481 634 False 704.000000 704 86.8540 215 845 1 chr4D.!!$F2 630
25 TraesCS2D01G319100 chr7B 71269609 71270250 641 True 638.000000 638 84.9000 209 844 1 chr7B.!!$R2 635
26 TraesCS2D01G319100 chr7B 675872033 675872664 631 False 612.000000 612 84.5310 219 843 1 chr7B.!!$F1 624
27 TraesCS2D01G319100 chr6B 409623926 409624564 638 True 623.000000 623 84.5680 209 844 1 chr6B.!!$R1 635
28 TraesCS2D01G319100 chr5A 579167368 579167941 573 False 540.000000 540 84.4440 5532 6087 1 chr5A.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 495 0.034896 ACAGGTCGCAGGTTCGATTT 59.965 50.0 0.00 0.00 40.84 2.17 F
485 502 0.169009 GCAGGTTCGATTTCCACTGC 59.831 55.0 0.00 0.00 43.50 4.40 F
2520 3021 0.107508 AGGAGGCATGATTCCACACG 60.108 55.0 15.70 0.00 35.88 4.49 F
2894 3608 0.104304 CTAGCAACTACCGCCGGATT 59.896 55.0 11.71 0.00 0.00 3.01 F
2895 3609 0.179094 TAGCAACTACCGCCGGATTG 60.179 55.0 11.71 12.48 0.00 2.67 F
4033 5594 0.036858 GGCTCTGAGTCTTGTGACCC 60.037 60.0 6.53 0.00 43.91 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 2970 1.000233 CCCACCAAGCCATAGCCAA 60.000 57.895 0.0 0.0 41.25 4.52 R
2559 3060 8.653191 AGATACACCGGGAGTATAGATAGATAG 58.347 40.741 18.3 0.0 32.60 2.08 R
3976 5474 0.327924 TACGTACTCCCTCCGTCCAA 59.672 55.000 0.0 0.0 36.12 3.53 R
3977 5475 0.327924 TTACGTACTCCCTCCGTCCA 59.672 55.000 0.0 0.0 36.12 4.02 R
4761 6341 0.454285 CACGCAACCGCAACCTAATG 60.454 55.000 0.0 0.0 38.40 1.90 R
5544 7133 0.686224 TTAGGGGGTGGTGTTGTACG 59.314 55.000 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
250 261 3.974871 ATTACAAAAAGTTCACCGCGT 57.025 38.095 4.92 0.00 0.00 6.01
311 322 2.018544 CAACGAACGAGCCCAACAA 58.981 52.632 0.14 0.00 0.00 2.83
478 495 0.034896 ACAGGTCGCAGGTTCGATTT 59.965 50.000 0.00 0.00 40.84 2.17
481 498 0.672401 GGTCGCAGGTTCGATTTCCA 60.672 55.000 0.00 0.00 40.84 3.53
485 502 0.169009 GCAGGTTCGATTTCCACTGC 59.831 55.000 0.00 0.00 43.50 4.40
498 516 1.879380 TCCACTGCCGTCTGAATTTTG 59.121 47.619 0.00 0.00 0.00 2.44
507 525 4.444388 GCCGTCTGAATTTTGTTTCCTTTC 59.556 41.667 0.00 0.00 0.00 2.62
543 568 2.542178 GTGGCGGAAAATTTCAAACCAC 59.458 45.455 20.34 20.34 39.52 4.16
570 596 0.322098 TCGGTGGTGGAAATTGCGAT 60.322 50.000 0.00 0.00 0.00 4.58
571 597 1.066071 TCGGTGGTGGAAATTGCGATA 60.066 47.619 0.00 0.00 0.00 2.92
898 938 3.181448 CCACCCCTATACAATACCACACC 60.181 52.174 0.00 0.00 0.00 4.16
949 989 6.096423 CCCTGTGTAGTTGTTATAGCTAGTGA 59.904 42.308 0.00 0.00 0.00 3.41
977 1017 3.337889 GCGTGCGTGCAAGTGAGA 61.338 61.111 9.41 0.00 34.15 3.27
1119 1159 0.394565 GTGGCCTCATCTTCGGCTAT 59.605 55.000 3.32 0.00 45.57 2.97
1149 1189 3.064987 CTCAGGTACCGGCCTCACG 62.065 68.421 7.24 0.00 36.58 4.35
1150 1190 4.814294 CAGGTACCGGCCTCACGC 62.814 72.222 6.18 0.00 36.58 5.34
1177 1217 1.202110 GCAATTCTGCCGAGATGTGTG 60.202 52.381 0.00 0.00 43.26 3.82
1228 1268 3.255725 TCGGTGATAATGTTTGGTCGAC 58.744 45.455 7.13 7.13 0.00 4.20
1515 1555 3.838271 ATGCTCATCGTCGGCCGT 61.838 61.111 27.15 1.49 37.94 5.68
1569 1609 6.405731 CCAACCAGGTATGTTTGGTATTCATG 60.406 42.308 0.00 0.00 46.67 3.07
1594 1634 3.133721 AGCTGATCTGTATCTGGAACCAC 59.866 47.826 1.27 0.00 33.04 4.16
1595 1635 3.742640 GCTGATCTGTATCTGGAACCACC 60.743 52.174 1.27 0.00 39.54 4.61
1596 1636 2.430694 TGATCTGTATCTGGAACCACCG 59.569 50.000 0.00 0.00 42.61 4.94
1616 1656 5.173131 CACCGCTGAATTTTTGAAACTGTAC 59.827 40.000 0.00 0.00 0.00 2.90
1629 1676 9.834628 TTTTGAAACTGTACAAGTAGAAACAAG 57.165 29.630 0.00 0.00 38.56 3.16
1644 1691 3.409026 AACAAGGAGCTGGTTACTGAG 57.591 47.619 0.00 0.00 0.00 3.35
1668 1715 8.862550 AGTTTCAAGAATTTCACAATCTGTTC 57.137 30.769 0.00 0.00 0.00 3.18
1689 1736 6.660094 TGTTCGGCCCTTTAAACTGTATAAAT 59.340 34.615 0.00 0.00 0.00 1.40
1697 1744 8.732531 CCCTTTAAACTGTATAAATTCGACCAA 58.267 33.333 0.00 0.00 0.00 3.67
1802 2293 6.893554 TGCCTAAGTATAGTGTTTCTACTCCA 59.106 38.462 0.00 0.00 32.19 3.86
1804 2295 8.422566 GCCTAAGTATAGTGTTTCTACTCCATT 58.577 37.037 0.00 0.00 32.19 3.16
1833 2324 8.050778 TCCAAATTAATTGTCGCATCTTTAGT 57.949 30.769 0.39 0.00 37.32 2.24
1834 2325 9.168451 TCCAAATTAATTGTCGCATCTTTAGTA 57.832 29.630 0.39 0.00 37.32 1.82
1835 2326 9.781834 CCAAATTAATTGTCGCATCTTTAGTAA 57.218 29.630 0.39 0.00 37.32 2.24
1842 2333 9.821662 AATTGTCGCATCTTTAGTAAACTTAAC 57.178 29.630 0.00 0.00 0.00 2.01
1843 2334 7.949903 TGTCGCATCTTTAGTAAACTTAACA 57.050 32.000 0.00 0.00 0.00 2.41
1844 2335 8.014322 TGTCGCATCTTTAGTAAACTTAACAG 57.986 34.615 0.00 0.00 0.00 3.16
1845 2336 7.654520 TGTCGCATCTTTAGTAAACTTAACAGT 59.345 33.333 0.00 0.00 33.11 3.55
1846 2337 8.493547 GTCGCATCTTTAGTAAACTTAACAGTT 58.506 33.333 0.00 0.00 45.89 3.16
1862 2353 9.561069 ACTTAACAGTTTGTCTAATTCACATCT 57.439 29.630 0.00 0.00 0.00 2.90
1866 2357 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
1867 2358 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
1894 2385 8.561738 TTTTTAAGGATGTCACATCTAACCTC 57.438 34.615 17.46 0.00 0.00 3.85
1895 2386 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
1896 2387 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
1897 2388 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
1898 2389 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
1899 2390 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
1900 2391 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
1901 2392 3.392947 TGTCACATCTAACCTCCCACAAA 59.607 43.478 0.00 0.00 0.00 2.83
1902 2393 4.042809 TGTCACATCTAACCTCCCACAAAT 59.957 41.667 0.00 0.00 0.00 2.32
1903 2394 5.249622 TGTCACATCTAACCTCCCACAAATA 59.750 40.000 0.00 0.00 0.00 1.40
1904 2395 6.177610 GTCACATCTAACCTCCCACAAATAA 58.822 40.000 0.00 0.00 0.00 1.40
1905 2396 6.316390 GTCACATCTAACCTCCCACAAATAAG 59.684 42.308 0.00 0.00 0.00 1.73
1906 2397 5.590259 CACATCTAACCTCCCACAAATAAGG 59.410 44.000 0.00 0.00 34.94 2.69
1907 2398 4.230745 TCTAACCTCCCACAAATAAGGC 57.769 45.455 0.00 0.00 31.79 4.35
1908 2399 2.990740 AACCTCCCACAAATAAGGCA 57.009 45.000 0.00 0.00 31.79 4.75
1909 2400 2.514458 ACCTCCCACAAATAAGGCAG 57.486 50.000 0.00 0.00 31.79 4.85
1910 2401 1.106285 CCTCCCACAAATAAGGCAGC 58.894 55.000 0.00 0.00 0.00 5.25
1911 2402 1.616725 CCTCCCACAAATAAGGCAGCA 60.617 52.381 0.00 0.00 0.00 4.41
1912 2403 2.170166 CTCCCACAAATAAGGCAGCAA 58.830 47.619 0.00 0.00 0.00 3.91
1913 2404 1.892474 TCCCACAAATAAGGCAGCAAC 59.108 47.619 0.00 0.00 0.00 4.17
1914 2405 1.617850 CCCACAAATAAGGCAGCAACA 59.382 47.619 0.00 0.00 0.00 3.33
1915 2406 2.036992 CCCACAAATAAGGCAGCAACAA 59.963 45.455 0.00 0.00 0.00 2.83
1916 2407 3.494048 CCCACAAATAAGGCAGCAACAAA 60.494 43.478 0.00 0.00 0.00 2.83
1917 2408 3.742369 CCACAAATAAGGCAGCAACAAAG 59.258 43.478 0.00 0.00 0.00 2.77
1918 2409 4.501229 CCACAAATAAGGCAGCAACAAAGA 60.501 41.667 0.00 0.00 0.00 2.52
1919 2410 5.049167 CACAAATAAGGCAGCAACAAAGAA 58.951 37.500 0.00 0.00 0.00 2.52
1920 2411 5.049828 ACAAATAAGGCAGCAACAAAGAAC 58.950 37.500 0.00 0.00 0.00 3.01
1921 2412 4.935352 AATAAGGCAGCAACAAAGAACA 57.065 36.364 0.00 0.00 0.00 3.18
1922 2413 4.935352 ATAAGGCAGCAACAAAGAACAA 57.065 36.364 0.00 0.00 0.00 2.83
1923 2414 3.608316 AAGGCAGCAACAAAGAACAAA 57.392 38.095 0.00 0.00 0.00 2.83
1924 2415 3.608316 AGGCAGCAACAAAGAACAAAA 57.392 38.095 0.00 0.00 0.00 2.44
1925 2416 3.936564 AGGCAGCAACAAAGAACAAAAA 58.063 36.364 0.00 0.00 0.00 1.94
1967 2458 8.918202 AAAATAGACCACAAACATAGTGAAGA 57.082 30.769 0.00 0.00 39.30 2.87
1968 2459 9.520515 AAAATAGACCACAAACATAGTGAAGAT 57.479 29.630 0.00 0.00 39.30 2.40
1969 2460 8.723942 AATAGACCACAAACATAGTGAAGATC 57.276 34.615 0.00 0.00 39.30 2.75
1970 2461 6.114187 AGACCACAAACATAGTGAAGATCA 57.886 37.500 0.00 0.00 39.30 2.92
1971 2462 6.169094 AGACCACAAACATAGTGAAGATCAG 58.831 40.000 0.00 0.00 39.30 2.90
1972 2463 5.248640 ACCACAAACATAGTGAAGATCAGG 58.751 41.667 0.00 0.00 39.30 3.86
1973 2464 5.221925 ACCACAAACATAGTGAAGATCAGGT 60.222 40.000 0.00 0.00 39.30 4.00
1974 2465 5.707298 CCACAAACATAGTGAAGATCAGGTT 59.293 40.000 0.00 0.00 39.30 3.50
1975 2466 6.878923 CCACAAACATAGTGAAGATCAGGTTA 59.121 38.462 0.00 0.00 39.30 2.85
1976 2467 7.065085 CCACAAACATAGTGAAGATCAGGTTAG 59.935 40.741 0.00 0.00 39.30 2.34
1977 2468 7.819415 CACAAACATAGTGAAGATCAGGTTAGA 59.181 37.037 0.00 0.00 39.30 2.10
1978 2469 8.543774 ACAAACATAGTGAAGATCAGGTTAGAT 58.456 33.333 0.00 0.00 0.00 1.98
1979 2470 8.824781 CAAACATAGTGAAGATCAGGTTAGATG 58.175 37.037 0.00 0.00 0.00 2.90
1980 2471 7.667575 ACATAGTGAAGATCAGGTTAGATGT 57.332 36.000 0.00 0.00 0.00 3.06
1981 2472 7.495901 ACATAGTGAAGATCAGGTTAGATGTG 58.504 38.462 0.00 0.00 0.00 3.21
1982 2473 7.343057 ACATAGTGAAGATCAGGTTAGATGTGA 59.657 37.037 0.00 0.00 0.00 3.58
1983 2474 5.971763 AGTGAAGATCAGGTTAGATGTGAC 58.028 41.667 0.00 0.00 0.00 3.67
1984 2475 5.481824 AGTGAAGATCAGGTTAGATGTGACA 59.518 40.000 0.00 0.00 0.00 3.58
1985 2476 6.155910 AGTGAAGATCAGGTTAGATGTGACAT 59.844 38.462 0.00 0.00 0.00 3.06
1986 2477 7.343057 AGTGAAGATCAGGTTAGATGTGACATA 59.657 37.037 0.00 0.00 0.00 2.29
1987 2478 7.981789 GTGAAGATCAGGTTAGATGTGACATAA 59.018 37.037 0.00 0.00 0.00 1.90
1988 2479 7.981789 TGAAGATCAGGTTAGATGTGACATAAC 59.018 37.037 0.00 0.00 0.00 1.89
1989 2480 7.667575 AGATCAGGTTAGATGTGACATAACT 57.332 36.000 10.13 2.33 31.53 2.24
1990 2481 8.768501 AGATCAGGTTAGATGTGACATAACTA 57.231 34.615 10.13 1.46 31.53 2.24
1991 2482 9.373450 AGATCAGGTTAGATGTGACATAACTAT 57.627 33.333 10.13 3.77 31.53 2.12
1992 2483 9.632807 GATCAGGTTAGATGTGACATAACTATC 57.367 37.037 10.13 7.89 31.53 2.08
1993 2484 8.768501 TCAGGTTAGATGTGACATAACTATCT 57.231 34.615 10.13 1.13 31.53 1.98
1994 2485 8.851145 TCAGGTTAGATGTGACATAACTATCTC 58.149 37.037 10.13 0.00 31.53 2.75
1995 2486 8.633561 CAGGTTAGATGTGACATAACTATCTCA 58.366 37.037 10.13 0.00 31.53 3.27
1996 2487 8.634444 AGGTTAGATGTGACATAACTATCTCAC 58.366 37.037 10.13 0.71 33.80 3.51
1997 2488 8.414003 GGTTAGATGTGACATAACTATCTCACA 58.586 37.037 9.38 9.38 42.78 3.58
2003 2494 8.980481 TGTGACATAACTATCTCACATCTAGA 57.020 34.615 0.00 0.00 36.92 2.43
2004 2495 9.579932 TGTGACATAACTATCTCACATCTAGAT 57.420 33.333 0.00 0.00 36.92 1.98
2005 2496 9.838975 GTGACATAACTATCTCACATCTAGATG 57.161 37.037 27.63 27.63 44.15 2.90
2020 2511 5.916661 TCTAGATGTGTCCTAGACAAACC 57.083 43.478 0.00 0.00 44.49 3.27
2021 2512 3.983044 AGATGTGTCCTAGACAAACCC 57.017 47.619 0.00 0.00 44.49 4.11
2051 2542 0.678950 TTGATGTGTGGCGAGTGAGA 59.321 50.000 0.00 0.00 0.00 3.27
2056 2547 2.048127 GTGGCGAGTGAGACACCC 60.048 66.667 0.00 0.00 44.13 4.61
2075 2566 7.123547 AGACACCCAATAAACTGAAAGAAAACA 59.876 33.333 0.00 0.00 37.43 2.83
2116 2607 2.219903 TGTGACAACAATCTACGCAACG 59.780 45.455 0.00 0.00 31.82 4.10
2217 2714 3.031736 GCTTACTCACCCACCTATCAGA 58.968 50.000 0.00 0.00 0.00 3.27
2218 2715 3.643792 GCTTACTCACCCACCTATCAGAT 59.356 47.826 0.00 0.00 0.00 2.90
2219 2716 4.833380 GCTTACTCACCCACCTATCAGATA 59.167 45.833 0.00 0.00 0.00 1.98
2257 2754 7.634671 TGAGACAATAATAGTTCTCCGTGTA 57.365 36.000 0.00 0.00 0.00 2.90
2258 2755 8.234136 TGAGACAATAATAGTTCTCCGTGTAT 57.766 34.615 0.00 0.00 0.00 2.29
2259 2756 8.692710 TGAGACAATAATAGTTCTCCGTGTATT 58.307 33.333 0.00 0.00 0.00 1.89
2293 2790 9.390795 CTCACTTTCAATGTAATTTCACTGAAG 57.609 33.333 8.59 6.61 35.54 3.02
2348 2846 8.905702 CAAATATTTCAACAGTTTCAGCAGTAC 58.094 33.333 0.00 0.00 0.00 2.73
2398 2896 4.752146 ACATACTACGTCCCTAAACAAGC 58.248 43.478 0.00 0.00 0.00 4.01
2403 2901 1.349688 ACGTCCCTAAACAAGCATCCA 59.650 47.619 0.00 0.00 0.00 3.41
2461 2961 4.844085 TGACTATGGTCCCTCAAAAAGAGA 59.156 41.667 6.77 0.00 43.02 3.10
2462 2962 5.309543 TGACTATGGTCCCTCAAAAAGAGAA 59.690 40.000 6.77 0.00 43.02 2.87
2520 3021 0.107508 AGGAGGCATGATTCCACACG 60.108 55.000 15.70 0.00 35.88 4.49
2523 3024 0.740868 AGGCATGATTCCACACGTCG 60.741 55.000 0.00 0.00 0.00 5.12
2592 3306 3.231818 ACTCCCGGTGTATCTCATTAGG 58.768 50.000 0.00 0.00 0.00 2.69
2753 3467 5.959618 ACTTGCAATTTACTTCTACCACC 57.040 39.130 0.00 0.00 0.00 4.61
2759 3473 5.941647 GCAATTTACTTCTACCACCCTTACA 59.058 40.000 0.00 0.00 0.00 2.41
2805 3519 4.831155 CGGATGGAGGGAGTAATACTGTAA 59.169 45.833 0.00 0.00 0.00 2.41
2810 3524 8.653036 ATGGAGGGAGTAATACTGTAATAGTC 57.347 38.462 0.00 8.58 40.89 2.59
2816 3530 7.176340 GGGAGTAATACTGTAATAGTCCGTCAT 59.824 40.741 21.91 0.00 39.18 3.06
2817 3531 8.574737 GGAGTAATACTGTAATAGTCCGTCATT 58.425 37.037 16.95 0.00 40.89 2.57
2818 3532 9.962783 GAGTAATACTGTAATAGTCCGTCATTT 57.037 33.333 0.00 0.00 40.89 2.32
2819 3533 9.962783 AGTAATACTGTAATAGTCCGTCATTTC 57.037 33.333 0.00 0.00 40.89 2.17
2825 3539 8.861086 ACTGTAATAGTCCGTCATTTCATCTAT 58.139 33.333 0.00 0.00 33.17 1.98
2888 3602 1.000052 GGATCCTCTAGCAACTACCGC 60.000 57.143 3.84 0.00 0.00 5.68
2889 3603 1.000052 GATCCTCTAGCAACTACCGCC 60.000 57.143 0.00 0.00 0.00 6.13
2890 3604 1.065928 CCTCTAGCAACTACCGCCG 59.934 63.158 0.00 0.00 0.00 6.46
2891 3605 1.065928 CTCTAGCAACTACCGCCGG 59.934 63.158 0.00 0.00 0.00 6.13
2892 3606 1.378911 TCTAGCAACTACCGCCGGA 60.379 57.895 11.71 0.00 0.00 5.14
2894 3608 0.104304 CTAGCAACTACCGCCGGATT 59.896 55.000 11.71 0.00 0.00 3.01
2895 3609 0.179094 TAGCAACTACCGCCGGATTG 60.179 55.000 11.71 12.48 0.00 2.67
2897 3611 0.460635 GCAACTACCGCCGGATTGTA 60.461 55.000 11.71 1.31 0.00 2.41
2898 3612 1.808891 GCAACTACCGCCGGATTGTAT 60.809 52.381 11.71 0.00 0.00 2.29
2899 3613 2.557317 CAACTACCGCCGGATTGTATT 58.443 47.619 11.71 0.00 0.00 1.89
2900 3614 2.521105 ACTACCGCCGGATTGTATTC 57.479 50.000 11.71 0.00 0.00 1.75
2901 3615 2.037144 ACTACCGCCGGATTGTATTCT 58.963 47.619 11.71 0.00 0.00 2.40
2902 3616 2.433239 ACTACCGCCGGATTGTATTCTT 59.567 45.455 11.71 0.00 0.00 2.52
2917 3631 9.515020 GATTGTATTCTTTTTGTGTTGAACTCA 57.485 29.630 0.00 0.00 0.00 3.41
2948 3662 5.967674 GCCGAGATGAATGAATAAAACACAG 59.032 40.000 0.00 0.00 0.00 3.66
2967 3681 3.502211 ACAGCCCATTCTAAGACAAAACG 59.498 43.478 0.00 0.00 0.00 3.60
3033 3764 5.002464 AGCTATGCAGGCATTTAAAGTTG 57.998 39.130 12.54 0.00 37.82 3.16
3040 3771 7.018364 ATGCAGGCATTTAAAGTTGTAAACCC 61.018 38.462 0.00 0.00 39.87 4.11
3064 3795 8.593679 CCCCTTAAATTAAGAGGTCAACATTTT 58.406 33.333 13.87 0.00 38.02 1.82
3092 3825 1.071071 CCAAGGAGAAACCACGTACCA 59.929 52.381 0.00 0.00 42.04 3.25
3147 4042 1.068121 AGAAAGGTGGTAGCTGGCTT 58.932 50.000 0.00 0.00 0.00 4.35
3255 4434 9.057089 GTTACTCAAATTGAATAGTGGATAGGG 57.943 37.037 0.00 0.00 0.00 3.53
3258 4437 5.827797 TCAAATTGAATAGTGGATAGGGTGC 59.172 40.000 0.00 0.00 0.00 5.01
3307 4494 2.202260 CAACATGCTGCTCGTGCG 60.202 61.111 4.84 1.25 43.34 5.34
3390 4577 3.898123 TGGTGATAGCTCCTCCTATGTTC 59.102 47.826 0.21 0.00 0.00 3.18
3391 4578 4.156477 GGTGATAGCTCCTCCTATGTTCT 58.844 47.826 0.00 0.00 0.00 3.01
3414 4601 2.752640 TCCGTGCAGCGCTACCTA 60.753 61.111 10.99 0.00 39.71 3.08
3416 4603 1.951130 CCGTGCAGCGCTACCTATG 60.951 63.158 10.99 0.00 39.71 2.23
3417 4604 1.065764 CGTGCAGCGCTACCTATGA 59.934 57.895 10.99 0.00 0.00 2.15
3418 4605 1.209275 CGTGCAGCGCTACCTATGAC 61.209 60.000 10.99 0.00 0.00 3.06
3419 4606 0.876342 GTGCAGCGCTACCTATGACC 60.876 60.000 10.99 0.00 0.00 4.02
3421 4608 0.959553 GCAGCGCTACCTATGACCTA 59.040 55.000 10.99 0.00 0.00 3.08
3422 4609 1.546476 GCAGCGCTACCTATGACCTAT 59.454 52.381 10.99 0.00 0.00 2.57
3424 4611 2.164624 CAGCGCTACCTATGACCTATCC 59.835 54.545 10.99 0.00 0.00 2.59
3426 4613 2.761208 GCGCTACCTATGACCTATCCAT 59.239 50.000 0.00 0.00 0.00 3.41
3427 4614 3.181485 GCGCTACCTATGACCTATCCATC 60.181 52.174 0.00 0.00 0.00 3.51
3428 4615 3.065510 CGCTACCTATGACCTATCCATCG 59.934 52.174 0.00 0.00 0.00 3.84
3429 4616 3.181485 GCTACCTATGACCTATCCATCGC 60.181 52.174 0.00 0.00 0.00 4.58
3430 4617 2.889512 ACCTATGACCTATCCATCGCA 58.110 47.619 0.00 0.00 0.00 5.10
3431 4618 2.563179 ACCTATGACCTATCCATCGCAC 59.437 50.000 0.00 0.00 0.00 5.34
3432 4619 2.416027 CCTATGACCTATCCATCGCACG 60.416 54.545 0.00 0.00 0.00 5.34
3433 4620 1.328279 ATGACCTATCCATCGCACGA 58.672 50.000 0.00 0.00 0.00 4.35
3434 4621 1.107945 TGACCTATCCATCGCACGAA 58.892 50.000 0.00 0.00 0.00 3.85
3435 4622 1.686587 TGACCTATCCATCGCACGAAT 59.313 47.619 0.00 0.00 0.00 3.34
3436 4623 2.061773 GACCTATCCATCGCACGAATG 58.938 52.381 0.00 0.00 0.00 2.67
3437 4624 1.270305 ACCTATCCATCGCACGAATGG 60.270 52.381 12.43 12.43 36.82 3.16
3438 4625 1.270305 CCTATCCATCGCACGAATGGT 60.270 52.381 15.96 3.34 36.83 3.55
3439 4626 2.061773 CTATCCATCGCACGAATGGTC 58.938 52.381 15.96 0.00 36.83 4.02
3461 4648 4.288670 GATCCAATCGTCAACTAGTCGA 57.711 45.455 7.51 7.51 41.68 4.20
3468 4655 5.769484 ATCGTCAACTAGTCGATTACCAT 57.231 39.130 11.09 0.00 44.10 3.55
3469 4656 5.165911 TCGTCAACTAGTCGATTACCATC 57.834 43.478 0.00 0.00 33.01 3.51
3470 4657 4.637091 TCGTCAACTAGTCGATTACCATCA 59.363 41.667 0.00 0.00 33.01 3.07
3471 4658 4.970611 CGTCAACTAGTCGATTACCATCAG 59.029 45.833 0.00 0.00 0.00 2.90
3474 4661 5.067413 TCAACTAGTCGATTACCATCAGGAC 59.933 44.000 0.00 0.00 38.69 3.85
3476 4663 1.067212 AGTCGATTACCATCAGGACGC 59.933 52.381 0.00 0.00 38.69 5.19
3477 4664 1.107945 TCGATTACCATCAGGACGCA 58.892 50.000 0.00 0.00 38.69 5.24
3480 4667 2.221749 CGATTACCATCAGGACGCATTG 59.778 50.000 0.00 0.00 38.69 2.82
3481 4668 3.466836 GATTACCATCAGGACGCATTGA 58.533 45.455 0.00 0.00 38.69 2.57
3483 4670 2.425143 ACCATCAGGACGCATTGATT 57.575 45.000 0.00 0.00 38.69 2.57
3484 4671 3.558931 ACCATCAGGACGCATTGATTA 57.441 42.857 0.00 0.00 38.69 1.75
3486 4673 4.464008 ACCATCAGGACGCATTGATTAAT 58.536 39.130 0.00 0.00 38.69 1.40
3487 4674 4.516698 ACCATCAGGACGCATTGATTAATC 59.483 41.667 8.60 8.60 38.69 1.75
3489 4676 5.182570 CCATCAGGACGCATTGATTAATCAT 59.817 40.000 18.61 3.59 34.94 2.45
3490 4677 5.929697 TCAGGACGCATTGATTAATCATC 57.070 39.130 18.61 12.28 36.56 2.92
3491 4678 5.367302 TCAGGACGCATTGATTAATCATCA 58.633 37.500 18.61 5.66 40.43 3.07
3492 4679 5.237127 TCAGGACGCATTGATTAATCATCAC 59.763 40.000 18.61 9.85 41.98 3.06
3493 4680 4.212004 AGGACGCATTGATTAATCATCACG 59.788 41.667 18.61 21.02 41.98 4.35
3494 4681 4.024893 GGACGCATTGATTAATCATCACGT 60.025 41.667 26.62 26.62 41.98 4.49
3496 4683 5.974300 ACGCATTGATTAATCATCACGTAC 58.026 37.500 25.80 11.22 41.98 3.67
3497 4684 5.050363 ACGCATTGATTAATCATCACGTACC 60.050 40.000 25.80 9.31 41.98 3.34
3498 4685 5.374080 GCATTGATTAATCATCACGTACCG 58.626 41.667 18.61 0.32 41.98 4.02
3499 4686 5.176774 GCATTGATTAATCATCACGTACCGA 59.823 40.000 18.61 0.53 41.98 4.69
3500 4687 6.128553 GCATTGATTAATCATCACGTACCGAT 60.129 38.462 18.61 2.90 41.98 4.18
3501 4688 7.448228 CATTGATTAATCATCACGTACCGATC 58.552 38.462 18.61 0.00 41.98 3.69
3505 4864 1.099295 TCATCACGTACCGATCGCCT 61.099 55.000 10.32 0.00 0.00 5.52
3510 4869 1.310933 ACGTACCGATCGCCTCTTGT 61.311 55.000 10.32 3.49 0.00 3.16
3514 4873 2.295253 ACCGATCGCCTCTTGTTTAG 57.705 50.000 10.32 0.00 0.00 1.85
3515 4874 1.134788 ACCGATCGCCTCTTGTTTAGG 60.135 52.381 10.32 0.00 37.17 2.69
3517 4876 2.194271 CGATCGCCTCTTGTTTAGGTC 58.806 52.381 0.26 0.00 36.43 3.85
3523 4882 3.941483 CGCCTCTTGTTTAGGTCATGATT 59.059 43.478 0.00 0.00 36.43 2.57
3524 4883 5.105106 TCGCCTCTTGTTTAGGTCATGATTA 60.105 40.000 0.00 0.00 36.43 1.75
3525 4884 5.584649 CGCCTCTTGTTTAGGTCATGATTAA 59.415 40.000 0.00 0.00 36.43 1.40
3535 5033 9.274206 GTTTAGGTCATGATTAATACTTCCTCC 57.726 37.037 0.00 0.00 0.00 4.30
3538 5036 6.781014 AGGTCATGATTAATACTTCCTCCGTA 59.219 38.462 0.00 0.00 0.00 4.02
3555 5053 5.231568 CCTCCGTACGAAAATACTTGTCATC 59.768 44.000 18.76 0.00 0.00 2.92
3571 5069 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3585 5083 9.759473 ATGGATAAAAGGGGATGTATCTAAATG 57.241 33.333 0.00 0.00 0.00 2.32
3653 5151 7.038799 ACAAGTATTTTTAGACGGAGGGAGTAA 60.039 37.037 0.00 0.00 0.00 2.24
3654 5152 6.871844 AGTATTTTTAGACGGAGGGAGTAAC 58.128 40.000 0.00 0.00 0.00 2.50
3656 5154 7.836183 AGTATTTTTAGACGGAGGGAGTAACTA 59.164 37.037 0.00 0.00 0.00 2.24
3657 5155 5.904362 TTTTAGACGGAGGGAGTAACTAC 57.096 43.478 0.00 0.00 0.00 2.73
3661 5159 1.457346 CGGAGGGAGTAACTACGTGT 58.543 55.000 0.00 0.00 37.51 4.49
3662 5160 2.632377 CGGAGGGAGTAACTACGTGTA 58.368 52.381 0.00 0.00 37.51 2.90
3663 5161 2.352960 CGGAGGGAGTAACTACGTGTAC 59.647 54.545 0.00 0.00 37.51 2.90
3665 5163 4.680708 CGGAGGGAGTAACTACGTGTACTA 60.681 50.000 0.00 0.00 37.51 1.82
3666 5164 4.572795 GGAGGGAGTAACTACGTGTACTAC 59.427 50.000 0.00 3.94 0.00 2.73
3668 5166 4.226168 AGGGAGTAACTACGTGTACTACCT 59.774 45.833 23.91 23.91 46.26 3.08
3669 5167 4.572795 GGGAGTAACTACGTGTACTACCTC 59.427 50.000 21.38 9.28 39.78 3.85
3670 5168 4.572795 GGAGTAACTACGTGTACTACCTCC 59.427 50.000 0.00 0.52 0.00 4.30
3671 5169 4.184629 AGTAACTACGTGTACTACCTCCG 58.815 47.826 0.00 0.00 0.00 4.63
3672 5170 2.770164 ACTACGTGTACTACCTCCGT 57.230 50.000 0.00 0.00 35.68 4.69
3673 5171 2.622436 ACTACGTGTACTACCTCCGTC 58.378 52.381 0.00 0.00 33.32 4.79
3674 5172 2.234908 ACTACGTGTACTACCTCCGTCT 59.765 50.000 0.00 0.00 33.32 4.18
3675 5173 2.191128 ACGTGTACTACCTCCGTCTT 57.809 50.000 0.00 0.00 0.00 3.01
3676 5174 2.508526 ACGTGTACTACCTCCGTCTTT 58.491 47.619 0.00 0.00 0.00 2.52
3677 5175 2.227388 ACGTGTACTACCTCCGTCTTTG 59.773 50.000 0.00 0.00 0.00 2.77
3678 5176 2.227388 CGTGTACTACCTCCGTCTTTGT 59.773 50.000 0.00 0.00 0.00 2.83
3679 5177 3.304928 CGTGTACTACCTCCGTCTTTGTT 60.305 47.826 0.00 0.00 0.00 2.83
3680 5178 4.625028 GTGTACTACCTCCGTCTTTGTTT 58.375 43.478 0.00 0.00 0.00 2.83
3681 5179 5.562696 CGTGTACTACCTCCGTCTTTGTTTA 60.563 44.000 0.00 0.00 0.00 2.01
3682 5180 6.393171 GTGTACTACCTCCGTCTTTGTTTAT 58.607 40.000 0.00 0.00 0.00 1.40
3683 5181 6.870439 GTGTACTACCTCCGTCTTTGTTTATT 59.130 38.462 0.00 0.00 0.00 1.40
3684 5182 8.028938 GTGTACTACCTCCGTCTTTGTTTATTA 58.971 37.037 0.00 0.00 0.00 0.98
3685 5183 8.246180 TGTACTACCTCCGTCTTTGTTTATTAG 58.754 37.037 0.00 0.00 0.00 1.73
3686 5184 7.237209 ACTACCTCCGTCTTTGTTTATTAGT 57.763 36.000 0.00 0.00 0.00 2.24
3687 5185 7.674120 ACTACCTCCGTCTTTGTTTATTAGTT 58.326 34.615 0.00 0.00 0.00 2.24
3688 5186 8.152898 ACTACCTCCGTCTTTGTTTATTAGTTT 58.847 33.333 0.00 0.00 0.00 2.66
3689 5187 7.812690 ACCTCCGTCTTTGTTTATTAGTTTT 57.187 32.000 0.00 0.00 0.00 2.43
3690 5188 8.229253 ACCTCCGTCTTTGTTTATTAGTTTTT 57.771 30.769 0.00 0.00 0.00 1.94
3726 5224 8.563732 TGCCAAATTTTAACCAAAAGATTTAGC 58.436 29.630 0.00 0.00 37.08 3.09
3727 5225 8.783093 GCCAAATTTTAACCAAAAGATTTAGCT 58.217 29.630 0.00 0.00 37.08 3.32
3828 5326 7.443218 TTTTGTGACATACGTGAACATTTTG 57.557 32.000 0.00 0.00 0.00 2.44
3829 5327 5.743026 TGTGACATACGTGAACATTTTGT 57.257 34.783 0.00 0.00 0.00 2.83
3830 5328 6.125327 TGTGACATACGTGAACATTTTGTT 57.875 33.333 0.00 0.00 44.37 2.83
3831 5329 7.247929 TGTGACATACGTGAACATTTTGTTA 57.752 32.000 0.00 0.00 41.28 2.41
3832 5330 7.348956 TGTGACATACGTGAACATTTTGTTAG 58.651 34.615 0.00 0.00 41.28 2.34
3833 5331 7.011576 TGTGACATACGTGAACATTTTGTTAGT 59.988 33.333 0.00 0.00 41.28 2.24
3834 5332 7.853929 GTGACATACGTGAACATTTTGTTAGTT 59.146 33.333 0.00 0.00 41.28 2.24
3835 5333 9.043079 TGACATACGTGAACATTTTGTTAGTTA 57.957 29.630 0.00 0.00 41.28 2.24
3836 5334 9.866936 GACATACGTGAACATTTTGTTAGTTAA 57.133 29.630 0.00 0.00 41.28 2.01
3878 5376 8.470040 TGACACGAAATACAATACTAAAGACC 57.530 34.615 0.00 0.00 0.00 3.85
3879 5377 8.089597 TGACACGAAATACAATACTAAAGACCA 58.910 33.333 0.00 0.00 0.00 4.02
3880 5378 8.836268 ACACGAAATACAATACTAAAGACCAA 57.164 30.769 0.00 0.00 0.00 3.67
3881 5379 9.444600 ACACGAAATACAATACTAAAGACCAAT 57.555 29.630 0.00 0.00 0.00 3.16
3889 5387 8.575649 ACAATACTAAAGACCAATAAACCAGG 57.424 34.615 0.00 0.00 0.00 4.45
3890 5388 8.387813 ACAATACTAAAGACCAATAAACCAGGA 58.612 33.333 0.00 0.00 0.00 3.86
3891 5389 8.674607 CAATACTAAAGACCAATAAACCAGGAC 58.325 37.037 0.00 0.00 0.00 3.85
3892 5390 5.243207 ACTAAAGACCAATAAACCAGGACG 58.757 41.667 0.00 0.00 0.00 4.79
3893 5391 2.781681 AGACCAATAAACCAGGACGG 57.218 50.000 0.00 0.00 42.50 4.79
3894 5392 2.262637 AGACCAATAAACCAGGACGGA 58.737 47.619 0.00 0.00 38.63 4.69
3895 5393 2.236395 AGACCAATAAACCAGGACGGAG 59.764 50.000 0.00 0.00 38.63 4.63
3896 5394 1.339727 ACCAATAAACCAGGACGGAGC 60.340 52.381 0.00 0.00 38.63 4.70
3897 5395 1.065418 CCAATAAACCAGGACGGAGCT 60.065 52.381 0.00 0.00 38.63 4.09
3898 5396 2.169769 CCAATAAACCAGGACGGAGCTA 59.830 50.000 0.00 0.00 38.63 3.32
3899 5397 3.458189 CAATAAACCAGGACGGAGCTAG 58.542 50.000 0.00 0.00 38.63 3.42
3900 5398 2.226962 TAAACCAGGACGGAGCTAGT 57.773 50.000 0.00 0.00 38.63 2.57
3901 5399 2.226962 AAACCAGGACGGAGCTAGTA 57.773 50.000 0.00 0.00 38.63 1.82
3902 5400 2.456073 AACCAGGACGGAGCTAGTAT 57.544 50.000 0.00 0.00 38.63 2.12
3903 5401 1.693627 ACCAGGACGGAGCTAGTATG 58.306 55.000 0.00 0.00 38.63 2.39
3904 5402 1.214673 ACCAGGACGGAGCTAGTATGA 59.785 52.381 0.00 0.00 38.63 2.15
3905 5403 2.307768 CCAGGACGGAGCTAGTATGAA 58.692 52.381 0.00 0.00 36.56 2.57
3906 5404 2.294791 CCAGGACGGAGCTAGTATGAAG 59.705 54.545 0.00 0.00 36.56 3.02
3907 5405 2.952978 CAGGACGGAGCTAGTATGAAGT 59.047 50.000 0.00 0.00 0.00 3.01
3908 5406 4.135306 CAGGACGGAGCTAGTATGAAGTA 58.865 47.826 0.00 0.00 0.00 2.24
3909 5407 4.023878 CAGGACGGAGCTAGTATGAAGTAC 60.024 50.000 0.00 0.00 0.00 2.73
3910 5408 4.136051 GGACGGAGCTAGTATGAAGTACT 58.864 47.826 0.00 0.00 45.49 2.73
3911 5409 4.213906 GGACGGAGCTAGTATGAAGTACTC 59.786 50.000 0.00 0.00 42.63 2.59
3912 5410 5.038651 ACGGAGCTAGTATGAAGTACTCT 57.961 43.478 0.00 0.00 42.63 3.24
3913 5411 5.438833 ACGGAGCTAGTATGAAGTACTCTT 58.561 41.667 0.00 0.00 42.63 2.85
3914 5412 5.887035 ACGGAGCTAGTATGAAGTACTCTTT 59.113 40.000 0.00 0.00 42.63 2.52
3915 5413 6.038492 ACGGAGCTAGTATGAAGTACTCTTTC 59.962 42.308 0.00 0.00 42.63 2.62
3916 5414 6.513720 CGGAGCTAGTATGAAGTACTCTTTCC 60.514 46.154 0.00 0.00 42.63 3.13
3917 5415 6.380095 AGCTAGTATGAAGTACTCTTTCCG 57.620 41.667 0.00 0.00 42.63 4.30
3918 5416 5.887035 AGCTAGTATGAAGTACTCTTTCCGT 59.113 40.000 0.00 0.00 42.63 4.69
3919 5417 6.377712 AGCTAGTATGAAGTACTCTTTCCGTT 59.622 38.462 0.00 0.00 42.63 4.44
3920 5418 6.692249 GCTAGTATGAAGTACTCTTTCCGTTC 59.308 42.308 0.00 0.00 42.63 3.95
3921 5419 6.837471 AGTATGAAGTACTCTTTCCGTTCT 57.163 37.500 0.00 0.00 39.46 3.01
3922 5420 6.622549 AGTATGAAGTACTCTTTCCGTTCTG 58.377 40.000 0.00 0.00 39.46 3.02
3923 5421 5.723672 ATGAAGTACTCTTTCCGTTCTGA 57.276 39.130 0.00 0.00 33.64 3.27
3924 5422 5.524971 TGAAGTACTCTTTCCGTTCTGAA 57.475 39.130 0.00 0.00 33.64 3.02
3925 5423 5.909477 TGAAGTACTCTTTCCGTTCTGAAA 58.091 37.500 0.00 0.00 33.64 2.69
3926 5424 6.522054 TGAAGTACTCTTTCCGTTCTGAAAT 58.478 36.000 0.00 0.00 33.98 2.17
3927 5425 7.663827 TGAAGTACTCTTTCCGTTCTGAAATA 58.336 34.615 0.00 0.00 33.98 1.40
3928 5426 7.813148 TGAAGTACTCTTTCCGTTCTGAAATAG 59.187 37.037 0.00 0.00 35.63 1.73
3929 5427 7.463961 AGTACTCTTTCCGTTCTGAAATAGA 57.536 36.000 0.00 0.00 34.10 1.98
3930 5428 8.068892 AGTACTCTTTCCGTTCTGAAATAGAT 57.931 34.615 0.00 0.00 34.10 1.98
3931 5429 7.976734 AGTACTCTTTCCGTTCTGAAATAGATG 59.023 37.037 0.00 0.00 34.10 2.90
3932 5430 6.936279 ACTCTTTCCGTTCTGAAATAGATGA 58.064 36.000 6.07 0.00 34.10 2.92
3933 5431 6.814146 ACTCTTTCCGTTCTGAAATAGATGAC 59.186 38.462 6.07 0.00 34.10 3.06
3934 5432 6.936279 TCTTTCCGTTCTGAAATAGATGACT 58.064 36.000 0.00 0.00 34.80 3.41
3935 5433 8.063200 TCTTTCCGTTCTGAAATAGATGACTA 57.937 34.615 0.00 0.00 34.80 2.59
3936 5434 8.528643 TCTTTCCGTTCTGAAATAGATGACTAA 58.471 33.333 0.00 0.00 34.80 2.24
3937 5435 8.475331 TTTCCGTTCTGAAATAGATGACTAAC 57.525 34.615 0.00 0.00 34.80 2.34
3938 5436 7.406031 TCCGTTCTGAAATAGATGACTAACT 57.594 36.000 0.00 0.00 34.80 2.24
3939 5437 7.837863 TCCGTTCTGAAATAGATGACTAACTT 58.162 34.615 0.00 0.00 34.80 2.66
3940 5438 8.311836 TCCGTTCTGAAATAGATGACTAACTTT 58.688 33.333 0.00 0.00 34.80 2.66
3941 5439 9.582431 CCGTTCTGAAATAGATGACTAACTTTA 57.418 33.333 0.00 0.00 34.80 1.85
3993 5491 0.604578 TTTTGGACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
3994 5492 0.540365 TTTGGACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 44.35 3.57
3997 5558 1.020437 GGACGGAGGGAGTACGTAAG 58.980 60.000 0.00 0.00 41.40 2.34
4013 5574 4.009675 ACGTAAGAAATGCACCATGTGAT 58.990 39.130 0.00 0.00 43.62 3.06
4025 5586 1.485480 CCATGTGATGGCTCTGAGTCT 59.515 52.381 11.02 0.00 44.70 3.24
4026 5587 2.093075 CCATGTGATGGCTCTGAGTCTT 60.093 50.000 11.02 3.91 44.70 3.01
4027 5588 2.756840 TGTGATGGCTCTGAGTCTTG 57.243 50.000 11.02 0.00 0.00 3.02
4028 5589 1.973515 TGTGATGGCTCTGAGTCTTGT 59.026 47.619 11.02 0.00 0.00 3.16
4029 5590 2.289257 TGTGATGGCTCTGAGTCTTGTG 60.289 50.000 11.02 0.00 0.00 3.33
4030 5591 2.028658 GTGATGGCTCTGAGTCTTGTGA 60.029 50.000 11.02 0.00 0.00 3.58
4031 5592 2.028658 TGATGGCTCTGAGTCTTGTGAC 60.029 50.000 11.02 0.00 43.22 3.67
4032 5593 0.681733 TGGCTCTGAGTCTTGTGACC 59.318 55.000 11.02 0.00 43.91 4.02
4033 5594 0.036858 GGCTCTGAGTCTTGTGACCC 60.037 60.000 6.53 0.00 43.91 4.46
4034 5595 0.681733 GCTCTGAGTCTTGTGACCCA 59.318 55.000 6.53 0.00 43.91 4.51
4035 5596 1.606737 GCTCTGAGTCTTGTGACCCAC 60.607 57.143 6.53 0.00 43.91 4.61
4036 5597 1.001406 CTCTGAGTCTTGTGACCCACC 59.999 57.143 0.00 0.00 43.91 4.61
4037 5598 0.319900 CTGAGTCTTGTGACCCACCG 60.320 60.000 0.00 0.00 43.91 4.94
4038 5599 1.046472 TGAGTCTTGTGACCCACCGT 61.046 55.000 0.00 0.00 43.91 4.83
4039 5600 0.600255 GAGTCTTGTGACCCACCGTG 60.600 60.000 0.00 0.00 43.91 4.94
4040 5601 2.110213 TCTTGTGACCCACCGTGC 59.890 61.111 0.00 0.00 32.73 5.34
4041 5602 2.978010 CTTGTGACCCACCGTGCC 60.978 66.667 0.00 0.00 32.73 5.01
4042 5603 4.920112 TTGTGACCCACCGTGCCG 62.920 66.667 0.00 0.00 32.73 5.69
4131 5692 1.842381 CGGGGTTCCAGCTCTTCCTT 61.842 60.000 0.00 0.00 0.00 3.36
4665 6241 2.270986 GCTGTTCTTGGCTGGTGGG 61.271 63.158 0.00 0.00 0.00 4.61
4761 6341 3.555428 AGCTCGTTCGCTGCTTTC 58.445 55.556 0.00 0.00 39.16 2.62
5189 6769 2.595463 GTCAAGGTGCAGCAGCCA 60.595 61.111 21.07 2.61 41.13 4.75
5352 6938 2.555757 AGTGCTGCTTGTGGAAAGATTC 59.444 45.455 0.00 0.00 0.00 2.52
5449 7038 4.319766 CCATTCGTCATTCCGGATTGAATC 60.320 45.833 26.24 15.97 32.71 2.52
5527 7116 6.966534 AATGGACTCATCAAGACTTGTTTT 57.033 33.333 14.75 0.00 32.24 2.43
5528 7117 8.463930 AAATGGACTCATCAAGACTTGTTTTA 57.536 30.769 14.75 0.00 32.24 1.52
5529 7118 6.861065 TGGACTCATCAAGACTTGTTTTAC 57.139 37.500 14.75 4.35 0.00 2.01
5544 7133 4.885325 TTGTTTTACAAGAGGAGTGGTTCC 59.115 41.667 0.00 0.00 38.57 3.62
5707 7327 4.705519 CACCCGTCGCCGTACGTT 62.706 66.667 15.21 0.00 44.19 3.99
6062 7729 2.430075 CGTCACGCCGTCATCACA 60.430 61.111 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
311 322 3.411351 CACTTAACTGGCGCGCGT 61.411 61.111 32.35 16.04 0.00 6.01
478 495 1.879380 CAAAATTCAGACGGCAGTGGA 59.121 47.619 0.00 0.00 0.00 4.02
481 498 3.243401 GGAAACAAAATTCAGACGGCAGT 60.243 43.478 0.00 0.00 0.00 4.40
485 502 5.587289 TGAAAGGAAACAAAATTCAGACGG 58.413 37.500 0.00 0.00 0.00 4.79
507 525 7.644986 TTTCCGCCACTTAAACAAATAAATG 57.355 32.000 0.00 0.00 0.00 2.32
543 568 0.613260 TTCCACCACCGAATCTGGAG 59.387 55.000 0.00 0.00 34.26 3.86
599 629 7.065803 TCACAAAAATGCCCAAAAATTTTACGA 59.934 29.630 3.34 0.00 35.47 3.43
601 631 9.526713 AATCACAAAAATGCCCAAAAATTTTAC 57.473 25.926 3.34 0.00 35.47 2.01
607 639 7.814264 ATGTAATCACAAAAATGCCCAAAAA 57.186 28.000 0.00 0.00 38.42 1.94
608 640 7.933577 TGTATGTAATCACAAAAATGCCCAAAA 59.066 29.630 0.00 0.00 38.42 2.44
664 701 1.293179 CTGTCAGGTGCCGACATGA 59.707 57.895 0.00 0.00 42.27 3.07
733 772 5.362430 TGTTCCAGACTTTTGCAAATAAGGT 59.638 36.000 13.65 9.65 0.00 3.50
856 896 4.954118 ACCGGTGAGTGGCAGGGA 62.954 66.667 6.12 0.00 0.00 4.20
898 938 1.401148 CGTGGTAGCTAATCCCGATCG 60.401 57.143 8.51 8.51 0.00 3.69
923 963 4.138487 AGCTATAACAACTACACAGGGC 57.862 45.455 0.00 0.00 0.00 5.19
977 1017 4.029809 GCCTGCCACCGGGTTAGT 62.030 66.667 6.32 0.00 39.86 2.24
1119 1159 1.409064 GTACCTGAGATGCCGATGTCA 59.591 52.381 0.00 0.00 31.32 3.58
1177 1217 7.863375 ACGTACATGCATAGAGATTAGAGAAAC 59.137 37.037 0.00 0.00 0.00 2.78
1485 1525 1.913778 TGAGCATGGCAATGTTCACT 58.086 45.000 15.98 0.00 45.69 3.41
1515 1555 2.106938 CCGAAGCCGAGCAGCATA 59.893 61.111 0.00 0.00 38.22 3.14
1594 1634 5.277825 TGTACAGTTTCAAAAATTCAGCGG 58.722 37.500 0.00 0.00 0.00 5.52
1595 1635 6.472163 ACTTGTACAGTTTCAAAAATTCAGCG 59.528 34.615 0.00 0.00 27.32 5.18
1596 1636 7.755582 ACTTGTACAGTTTCAAAAATTCAGC 57.244 32.000 0.00 0.00 27.32 4.26
1616 1656 3.744660 ACCAGCTCCTTGTTTCTACTTG 58.255 45.455 0.00 0.00 0.00 3.16
1629 1676 3.402628 TGAAACTCAGTAACCAGCTCC 57.597 47.619 0.00 0.00 0.00 4.70
1644 1691 7.096477 CCGAACAGATTGTGAAATTCTTGAAAC 60.096 37.037 0.00 0.00 0.00 2.78
1668 1715 6.037391 TCGAATTTATACAGTTTAAAGGGCCG 59.963 38.462 0.00 4.03 0.00 6.13
1689 1736 8.610248 TCAATAGAGTAAACAATTTGGTCGAA 57.390 30.769 0.78 0.00 0.00 3.71
1743 1790 6.149633 CCACCTAATAAACTGTTGCTTGTTC 58.850 40.000 0.00 0.00 0.00 3.18
1751 1800 5.873164 CGAGTTAGCCACCTAATAAACTGTT 59.127 40.000 0.00 0.00 36.06 3.16
1802 2293 6.130298 TGCGACAATTAATTTGGATCGAAT 57.870 33.333 18.16 0.00 39.80 3.34
1804 2295 5.527214 AGATGCGACAATTAATTTGGATCGA 59.473 36.000 18.16 0.00 39.80 3.59
1836 2327 9.561069 AGATGTGAATTAGACAAACTGTTAAGT 57.439 29.630 0.00 0.00 38.71 2.24
1840 2331 9.950496 ATCTAGATGTGAATTAGACAAACTGTT 57.050 29.630 3.89 0.00 0.00 3.16
1841 2332 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
1869 2360 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
1870 2361 7.110155 GGAGGTTAGATGTGACATCCTTAAAA 58.890 38.462 21.05 6.42 42.00 1.52
1871 2362 6.352737 GGGAGGTTAGATGTGACATCCTTAAA 60.353 42.308 21.05 8.69 44.05 1.52
1872 2363 5.130477 GGGAGGTTAGATGTGACATCCTTAA 59.870 44.000 21.05 11.73 44.05 1.85
1873 2364 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
1874 2365 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
1875 2366 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
1876 2367 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
1877 2368 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
1878 2369 3.181329 TGTGGGAGGTTAGATGTGACAT 58.819 45.455 0.00 0.00 0.00 3.06
1879 2370 2.615391 TGTGGGAGGTTAGATGTGACA 58.385 47.619 0.00 0.00 0.00 3.58
1880 2371 3.695830 TTGTGGGAGGTTAGATGTGAC 57.304 47.619 0.00 0.00 0.00 3.67
1881 2372 4.927267 ATTTGTGGGAGGTTAGATGTGA 57.073 40.909 0.00 0.00 0.00 3.58
1882 2373 5.590259 CCTTATTTGTGGGAGGTTAGATGTG 59.410 44.000 0.00 0.00 0.00 3.21
1883 2374 5.755849 CCTTATTTGTGGGAGGTTAGATGT 58.244 41.667 0.00 0.00 0.00 3.06
1884 2375 4.580580 GCCTTATTTGTGGGAGGTTAGATG 59.419 45.833 0.00 0.00 0.00 2.90
1885 2376 4.229582 TGCCTTATTTGTGGGAGGTTAGAT 59.770 41.667 0.00 0.00 0.00 1.98
1886 2377 3.589735 TGCCTTATTTGTGGGAGGTTAGA 59.410 43.478 0.00 0.00 0.00 2.10
1887 2378 3.947834 CTGCCTTATTTGTGGGAGGTTAG 59.052 47.826 0.00 0.00 38.01 2.34
1888 2379 3.876156 GCTGCCTTATTTGTGGGAGGTTA 60.876 47.826 0.00 0.00 41.30 2.85
1889 2380 2.807676 CTGCCTTATTTGTGGGAGGTT 58.192 47.619 0.00 0.00 38.01 3.50
1890 2381 1.616994 GCTGCCTTATTTGTGGGAGGT 60.617 52.381 0.00 0.00 41.30 3.85
1891 2382 1.106285 GCTGCCTTATTTGTGGGAGG 58.894 55.000 0.00 0.00 41.30 4.30
1892 2383 1.838112 TGCTGCCTTATTTGTGGGAG 58.162 50.000 0.00 0.00 43.41 4.30
1893 2384 1.892474 GTTGCTGCCTTATTTGTGGGA 59.108 47.619 0.00 0.00 0.00 4.37
1894 2385 1.617850 TGTTGCTGCCTTATTTGTGGG 59.382 47.619 0.00 0.00 0.00 4.61
1895 2386 3.383620 TTGTTGCTGCCTTATTTGTGG 57.616 42.857 0.00 0.00 0.00 4.17
1896 2387 4.619973 TCTTTGTTGCTGCCTTATTTGTG 58.380 39.130 0.00 0.00 0.00 3.33
1897 2388 4.935352 TCTTTGTTGCTGCCTTATTTGT 57.065 36.364 0.00 0.00 0.00 2.83
1898 2389 5.049167 TGTTCTTTGTTGCTGCCTTATTTG 58.951 37.500 0.00 0.00 0.00 2.32
1899 2390 5.275067 TGTTCTTTGTTGCTGCCTTATTT 57.725 34.783 0.00 0.00 0.00 1.40
1900 2391 4.935352 TGTTCTTTGTTGCTGCCTTATT 57.065 36.364 0.00 0.00 0.00 1.40
1901 2392 4.935352 TTGTTCTTTGTTGCTGCCTTAT 57.065 36.364 0.00 0.00 0.00 1.73
1902 2393 4.727507 TTTGTTCTTTGTTGCTGCCTTA 57.272 36.364 0.00 0.00 0.00 2.69
1903 2394 3.608316 TTTGTTCTTTGTTGCTGCCTT 57.392 38.095 0.00 0.00 0.00 4.35
1904 2395 3.608316 TTTTGTTCTTTGTTGCTGCCT 57.392 38.095 0.00 0.00 0.00 4.75
1941 2432 9.349713 TCTTCACTATGTTTGTGGTCTATTTTT 57.650 29.630 0.00 0.00 36.21 1.94
1942 2433 8.918202 TCTTCACTATGTTTGTGGTCTATTTT 57.082 30.769 0.00 0.00 36.21 1.82
1943 2434 9.167311 GATCTTCACTATGTTTGTGGTCTATTT 57.833 33.333 0.00 0.00 36.21 1.40
1944 2435 8.321353 TGATCTTCACTATGTTTGTGGTCTATT 58.679 33.333 0.00 0.00 36.21 1.73
1945 2436 7.851228 TGATCTTCACTATGTTTGTGGTCTAT 58.149 34.615 0.00 0.00 36.21 1.98
1946 2437 7.239763 TGATCTTCACTATGTTTGTGGTCTA 57.760 36.000 0.00 0.00 36.21 2.59
1947 2438 6.114187 TGATCTTCACTATGTTTGTGGTCT 57.886 37.500 0.00 0.00 36.21 3.85
1948 2439 5.352569 CCTGATCTTCACTATGTTTGTGGTC 59.647 44.000 0.00 0.00 36.21 4.02
1949 2440 5.221925 ACCTGATCTTCACTATGTTTGTGGT 60.222 40.000 0.00 0.00 36.21 4.16
1950 2441 5.248640 ACCTGATCTTCACTATGTTTGTGG 58.751 41.667 0.00 0.00 36.21 4.17
1951 2442 6.808008 AACCTGATCTTCACTATGTTTGTG 57.192 37.500 0.00 0.00 36.82 3.33
1952 2443 7.907389 TCTAACCTGATCTTCACTATGTTTGT 58.093 34.615 0.00 0.00 0.00 2.83
1953 2444 8.824781 CATCTAACCTGATCTTCACTATGTTTG 58.175 37.037 0.00 0.00 0.00 2.93
1954 2445 8.543774 ACATCTAACCTGATCTTCACTATGTTT 58.456 33.333 0.00 0.00 0.00 2.83
1955 2446 7.984050 CACATCTAACCTGATCTTCACTATGTT 59.016 37.037 0.00 0.00 0.00 2.71
1956 2447 7.343057 TCACATCTAACCTGATCTTCACTATGT 59.657 37.037 0.00 0.00 0.00 2.29
1957 2448 7.651304 GTCACATCTAACCTGATCTTCACTATG 59.349 40.741 0.00 0.00 0.00 2.23
1958 2449 7.343057 TGTCACATCTAACCTGATCTTCACTAT 59.657 37.037 0.00 0.00 0.00 2.12
1959 2450 6.663523 TGTCACATCTAACCTGATCTTCACTA 59.336 38.462 0.00 0.00 0.00 2.74
1960 2451 5.481824 TGTCACATCTAACCTGATCTTCACT 59.518 40.000 0.00 0.00 0.00 3.41
1961 2452 5.724328 TGTCACATCTAACCTGATCTTCAC 58.276 41.667 0.00 0.00 0.00 3.18
1962 2453 6.550938 ATGTCACATCTAACCTGATCTTCA 57.449 37.500 0.00 0.00 0.00 3.02
1963 2454 8.200792 AGTTATGTCACATCTAACCTGATCTTC 58.799 37.037 0.00 0.00 0.00 2.87
1964 2455 8.083828 AGTTATGTCACATCTAACCTGATCTT 57.916 34.615 0.00 0.00 0.00 2.40
1965 2456 7.667575 AGTTATGTCACATCTAACCTGATCT 57.332 36.000 0.00 0.00 0.00 2.75
1966 2457 9.632807 GATAGTTATGTCACATCTAACCTGATC 57.367 37.037 0.00 0.00 0.00 2.92
1967 2458 9.373450 AGATAGTTATGTCACATCTAACCTGAT 57.627 33.333 0.00 0.00 0.00 2.90
1968 2459 8.768501 AGATAGTTATGTCACATCTAACCTGA 57.231 34.615 0.00 0.00 0.00 3.86
1969 2460 8.633561 TGAGATAGTTATGTCACATCTAACCTG 58.366 37.037 0.00 0.00 31.90 4.00
1970 2461 8.768501 TGAGATAGTTATGTCACATCTAACCT 57.231 34.615 0.00 0.00 31.90 3.50
1996 2487 6.276847 GGTTTGTCTAGGACACATCTAGATG 58.723 44.000 27.63 27.63 42.60 2.90
1997 2488 5.364157 GGGTTTGTCTAGGACACATCTAGAT 59.636 44.000 0.00 0.00 42.60 1.98
1998 2489 4.710375 GGGTTTGTCTAGGACACATCTAGA 59.290 45.833 0.00 0.00 42.60 2.43
1999 2490 4.712337 AGGGTTTGTCTAGGACACATCTAG 59.288 45.833 0.00 0.00 42.60 2.43
2000 2491 4.684724 AGGGTTTGTCTAGGACACATCTA 58.315 43.478 0.00 0.00 42.60 1.98
2001 2492 3.521727 AGGGTTTGTCTAGGACACATCT 58.478 45.455 0.00 0.00 42.60 2.90
2002 2493 3.983044 AGGGTTTGTCTAGGACACATC 57.017 47.619 0.00 0.00 42.60 3.06
2003 2494 5.309806 AGTTTAGGGTTTGTCTAGGACACAT 59.690 40.000 0.00 0.00 42.60 3.21
2004 2495 4.657039 AGTTTAGGGTTTGTCTAGGACACA 59.343 41.667 0.00 0.00 42.60 3.72
2005 2496 5.224821 AGTTTAGGGTTTGTCTAGGACAC 57.775 43.478 0.00 0.00 42.60 3.67
2006 2497 5.899631 AAGTTTAGGGTTTGTCTAGGACA 57.100 39.130 0.00 0.00 41.09 4.02
2007 2498 8.859236 AAATAAGTTTAGGGTTTGTCTAGGAC 57.141 34.615 0.00 0.00 0.00 3.85
2008 2499 9.292195 CAAAATAAGTTTAGGGTTTGTCTAGGA 57.708 33.333 0.00 0.00 0.00 2.94
2009 2500 9.292195 TCAAAATAAGTTTAGGGTTTGTCTAGG 57.708 33.333 0.00 0.00 0.00 3.02
2012 2503 9.143155 ACATCAAAATAAGTTTAGGGTTTGTCT 57.857 29.630 0.00 0.00 0.00 3.41
2013 2504 9.191995 CACATCAAAATAAGTTTAGGGTTTGTC 57.808 33.333 0.00 0.00 0.00 3.18
2014 2505 8.700973 ACACATCAAAATAAGTTTAGGGTTTGT 58.299 29.630 0.00 0.00 0.00 2.83
2015 2506 8.977505 CACACATCAAAATAAGTTTAGGGTTTG 58.022 33.333 0.00 0.00 0.00 2.93
2016 2507 8.147704 CCACACATCAAAATAAGTTTAGGGTTT 58.852 33.333 0.00 0.00 0.00 3.27
2017 2508 7.666623 CCACACATCAAAATAAGTTTAGGGTT 58.333 34.615 0.00 0.00 0.00 4.11
2018 2509 6.295067 GCCACACATCAAAATAAGTTTAGGGT 60.295 38.462 0.00 0.00 0.00 4.34
2019 2510 6.099341 GCCACACATCAAAATAAGTTTAGGG 58.901 40.000 0.00 0.00 0.00 3.53
2020 2511 5.799936 CGCCACACATCAAAATAAGTTTAGG 59.200 40.000 0.00 0.00 0.00 2.69
2021 2512 6.607689 TCGCCACACATCAAAATAAGTTTAG 58.392 36.000 0.00 0.00 0.00 1.85
2051 2542 7.176589 TGTTTTCTTTCAGTTTATTGGGTGT 57.823 32.000 0.00 0.00 0.00 4.16
2056 2547 8.143835 AGGTCCATGTTTTCTTTCAGTTTATTG 58.856 33.333 0.00 0.00 0.00 1.90
2075 2566 4.281688 CACATTCAGGTTTTTCAGGTCCAT 59.718 41.667 0.00 0.00 0.00 3.41
2116 2607 8.293867 GGCGATATATAGAGATGTATCACTTCC 58.706 40.741 0.00 0.00 36.45 3.46
2198 2695 9.442062 TTTATTATCTGATAGGTGGGTGAGTAA 57.558 33.333 0.00 0.00 0.00 2.24
2217 2714 9.866655 TTATTGTCTCATTGGGAGCTTTATTAT 57.133 29.630 0.00 0.00 43.70 1.28
2218 2715 9.866655 ATTATTGTCTCATTGGGAGCTTTATTA 57.133 29.630 0.00 0.00 43.70 0.98
2219 2716 8.773033 ATTATTGTCTCATTGGGAGCTTTATT 57.227 30.769 0.00 0.00 43.70 1.40
2257 2754 6.610075 ACATTGAAAGTGAGGGCAATTAAT 57.390 33.333 0.00 0.00 31.17 1.40
2258 2755 7.531857 TTACATTGAAAGTGAGGGCAATTAA 57.468 32.000 0.00 0.00 31.17 1.40
2259 2756 7.716799 ATTACATTGAAAGTGAGGGCAATTA 57.283 32.000 0.00 0.00 31.17 1.40
2260 2757 6.610075 ATTACATTGAAAGTGAGGGCAATT 57.390 33.333 0.00 0.00 33.05 2.32
2316 2814 8.231692 TGAAACTGTTGAAATATTTGGACTGA 57.768 30.769 5.17 0.00 0.00 3.41
2322 2820 7.935338 ACTGCTGAAACTGTTGAAATATTTG 57.065 32.000 5.17 0.00 0.00 2.32
2336 2834 7.806690 TCAGAAATTATGTGTACTGCTGAAAC 58.193 34.615 0.00 0.00 0.00 2.78
2381 2879 3.195661 GGATGCTTGTTTAGGGACGTAG 58.804 50.000 0.00 0.00 0.00 3.51
2383 2881 1.349688 TGGATGCTTGTTTAGGGACGT 59.650 47.619 0.00 0.00 0.00 4.34
2385 2883 2.790433 TGTGGATGCTTGTTTAGGGAC 58.210 47.619 0.00 0.00 0.00 4.46
2387 2885 4.497300 CAATTGTGGATGCTTGTTTAGGG 58.503 43.478 0.00 0.00 0.00 3.53
2461 2961 1.697297 CCATAGCCAACCCACCCTT 59.303 57.895 0.00 0.00 0.00 3.95
2462 2962 2.996330 GCCATAGCCAACCCACCCT 61.996 63.158 0.00 0.00 0.00 4.34
2470 2970 1.000233 CCCACCAAGCCATAGCCAA 60.000 57.895 0.00 0.00 41.25 4.52
2559 3060 8.653191 AGATACACCGGGAGTATAGATAGATAG 58.347 40.741 18.30 0.00 32.60 2.08
2617 3331 8.786710 ACCTACCATACCAAGTATGTGTATAA 57.213 34.615 12.44 0.00 42.85 0.98
2619 3333 8.967779 ATACCTACCATACCAAGTATGTGTAT 57.032 34.615 12.44 10.30 42.85 2.29
2753 3467 3.393089 AGGCAGCGATTCTATGTAAGG 57.607 47.619 0.00 0.00 0.00 2.69
2759 3473 4.319177 GGATTGTTAGGCAGCGATTCTAT 58.681 43.478 0.00 0.00 0.00 1.98
2794 3508 9.740239 TGAAATGACGGACTATTACAGTATTAC 57.260 33.333 0.00 0.00 37.72 1.89
2810 3524 8.965986 TCGAGTTTATATAGATGAAATGACGG 57.034 34.615 0.00 0.00 0.00 4.79
2825 3539 9.005777 ACCTTTTGTATTTGCTTCGAGTTTATA 57.994 29.630 0.00 0.00 0.00 0.98
2888 3602 6.442952 TCAACACAAAAAGAATACAATCCGG 58.557 36.000 0.00 0.00 0.00 5.14
2889 3603 7.647715 AGTTCAACACAAAAAGAATACAATCCG 59.352 33.333 0.00 0.00 0.00 4.18
2890 3604 8.871686 AGTTCAACACAAAAAGAATACAATCC 57.128 30.769 0.00 0.00 0.00 3.01
2891 3605 9.515020 TGAGTTCAACACAAAAAGAATACAATC 57.485 29.630 0.00 0.00 0.00 2.67
2892 3606 9.520204 CTGAGTTCAACACAAAAAGAATACAAT 57.480 29.630 0.00 0.00 0.00 2.71
2894 3608 8.181573 GTCTGAGTTCAACACAAAAAGAATACA 58.818 33.333 0.00 0.00 0.00 2.29
2895 3609 7.644157 GGTCTGAGTTCAACACAAAAAGAATAC 59.356 37.037 0.00 0.00 0.00 1.89
2897 3611 6.378280 AGGTCTGAGTTCAACACAAAAAGAAT 59.622 34.615 0.00 0.00 0.00 2.40
2898 3612 5.710099 AGGTCTGAGTTCAACACAAAAAGAA 59.290 36.000 0.00 0.00 0.00 2.52
2899 3613 5.253330 AGGTCTGAGTTCAACACAAAAAGA 58.747 37.500 0.00 0.00 0.00 2.52
2900 3614 5.567138 AGGTCTGAGTTCAACACAAAAAG 57.433 39.130 0.00 0.00 0.00 2.27
2901 3615 5.708948 CAAGGTCTGAGTTCAACACAAAAA 58.291 37.500 0.00 0.00 0.00 1.94
2902 3616 4.380444 GCAAGGTCTGAGTTCAACACAAAA 60.380 41.667 0.00 0.00 0.00 2.44
2917 3631 1.833630 TCATTCATCTCGGCAAGGTCT 59.166 47.619 0.00 0.00 0.00 3.85
2948 3662 4.759516 TTCGTTTTGTCTTAGAATGGGC 57.240 40.909 0.00 0.00 0.00 5.36
3040 3771 9.423061 CCAAAATGTTGACCTCTTAATTTAAGG 57.577 33.333 14.60 4.78 36.83 2.69
3044 3775 8.096414 CCATCCAAAATGTTGACCTCTTAATTT 58.904 33.333 0.00 0.00 36.83 1.82
3064 3795 1.354368 GGTTTCTCCTTGGACCATCCA 59.646 52.381 0.00 0.00 46.61 3.41
3092 3825 1.899814 TGAACGGCTGTAGGACTTGAT 59.100 47.619 0.00 0.00 0.00 2.57
3147 4042 2.197324 AAACGAAGCAAGGGCCCA 59.803 55.556 27.56 0.00 42.56 5.36
3255 4434 1.052287 CAAAAGATGAAACGCGGCAC 58.948 50.000 12.47 0.85 0.00 5.01
3258 4437 2.973224 CTGAACAAAAGATGAAACGCGG 59.027 45.455 12.47 0.00 0.00 6.46
3307 4494 2.046892 ACTCACTCATGCGTGCCC 60.047 61.111 11.02 0.00 34.92 5.36
3390 4577 3.767230 CGCTGCACGGACGACAAG 61.767 66.667 0.00 0.00 38.44 3.16
3412 4599 2.488153 TCGTGCGATGGATAGGTCATAG 59.512 50.000 0.00 0.00 0.00 2.23
3414 4601 1.328279 TCGTGCGATGGATAGGTCAT 58.672 50.000 0.00 0.00 0.00 3.06
3416 4603 2.061773 CATTCGTGCGATGGATAGGTC 58.938 52.381 0.00 0.00 0.00 3.85
3417 4604 1.270305 CCATTCGTGCGATGGATAGGT 60.270 52.381 13.73 0.00 37.66 3.08
3418 4605 1.270305 ACCATTCGTGCGATGGATAGG 60.270 52.381 20.96 9.80 38.75 2.57
3419 4606 2.061773 GACCATTCGTGCGATGGATAG 58.938 52.381 20.96 1.17 38.75 2.08
3421 4608 0.875908 CGACCATTCGTGCGATGGAT 60.876 55.000 20.96 11.00 40.61 3.41
3422 4609 1.518352 CGACCATTCGTGCGATGGA 60.518 57.895 20.96 0.00 40.61 3.41
3424 4611 0.504384 GATCGACCATTCGTGCGATG 59.496 55.000 0.00 0.00 46.01 3.84
3426 4613 1.226859 GGATCGACCATTCGTGCGA 60.227 57.895 0.00 0.00 46.01 5.10
3427 4614 1.518352 TGGATCGACCATTCGTGCG 60.518 57.895 3.02 0.00 46.01 5.34
3428 4615 4.513519 TGGATCGACCATTCGTGC 57.486 55.556 3.02 0.00 46.01 5.34
3447 4634 4.637091 TGATGGTAATCGACTAGTTGACGA 59.363 41.667 15.25 11.10 45.40 4.20
3448 4635 4.916870 TGATGGTAATCGACTAGTTGACG 58.083 43.478 15.25 5.53 35.37 4.35
3449 4636 5.067413 TCCTGATGGTAATCGACTAGTTGAC 59.933 44.000 15.25 3.56 35.37 3.18
3450 4637 5.067413 GTCCTGATGGTAATCGACTAGTTGA 59.933 44.000 15.29 15.29 35.37 3.18
3452 4639 4.036498 CGTCCTGATGGTAATCGACTAGTT 59.964 45.833 0.00 0.00 35.37 2.24
3455 4642 2.292569 GCGTCCTGATGGTAATCGACTA 59.707 50.000 0.00 0.00 35.37 2.59
3457 4644 1.202371 TGCGTCCTGATGGTAATCGAC 60.202 52.381 0.00 0.00 35.37 4.20
3458 4645 1.107945 TGCGTCCTGATGGTAATCGA 58.892 50.000 0.00 0.00 35.37 3.59
3459 4646 2.154854 ATGCGTCCTGATGGTAATCG 57.845 50.000 0.00 0.00 35.37 3.34
3460 4647 3.466836 TCAATGCGTCCTGATGGTAATC 58.533 45.455 0.00 0.00 34.23 1.75
3461 4648 3.558931 TCAATGCGTCCTGATGGTAAT 57.441 42.857 0.00 0.00 34.23 1.89
3463 4650 3.558931 AATCAATGCGTCCTGATGGTA 57.441 42.857 0.00 0.00 32.60 3.25
3464 4651 2.425143 AATCAATGCGTCCTGATGGT 57.575 45.000 0.00 0.00 32.60 3.55
3465 4652 4.516321 TGATTAATCAATGCGTCCTGATGG 59.484 41.667 15.82 0.00 32.60 3.51
3466 4653 5.678132 TGATTAATCAATGCGTCCTGATG 57.322 39.130 15.82 0.00 32.60 3.07
3467 4654 5.999600 TGATGATTAATCAATGCGTCCTGAT 59.000 36.000 21.50 1.00 42.49 2.90
3468 4655 5.237127 GTGATGATTAATCAATGCGTCCTGA 59.763 40.000 21.50 0.00 46.90 3.86
3469 4656 5.446709 GTGATGATTAATCAATGCGTCCTG 58.553 41.667 21.50 0.00 46.90 3.86
3470 4657 4.212004 CGTGATGATTAATCAATGCGTCCT 59.788 41.667 21.50 3.00 46.90 3.85
3471 4658 4.024893 ACGTGATGATTAATCAATGCGTCC 60.025 41.667 25.11 12.60 46.90 4.79
3474 4661 5.374080 GGTACGTGATGATTAATCAATGCG 58.626 41.667 21.50 23.21 46.90 4.73
3493 4680 2.005971 AAACAAGAGGCGATCGGTAC 57.994 50.000 18.30 0.00 0.00 3.34
3494 4681 2.100252 CCTAAACAAGAGGCGATCGGTA 59.900 50.000 18.30 0.00 0.00 4.02
3496 4683 1.134788 ACCTAAACAAGAGGCGATCGG 60.135 52.381 18.30 0.82 37.63 4.18
3497 4684 2.194271 GACCTAAACAAGAGGCGATCG 58.806 52.381 11.69 11.69 37.63 3.69
3498 4685 3.247006 TGACCTAAACAAGAGGCGATC 57.753 47.619 0.00 0.00 37.63 3.69
3499 4686 3.197766 TCATGACCTAAACAAGAGGCGAT 59.802 43.478 0.00 0.00 37.63 4.58
3500 4687 2.565391 TCATGACCTAAACAAGAGGCGA 59.435 45.455 0.00 0.00 37.63 5.54
3501 4688 2.972625 TCATGACCTAAACAAGAGGCG 58.027 47.619 0.00 0.00 37.63 5.52
3510 4869 8.148351 CGGAGGAAGTATTAATCATGACCTAAA 58.852 37.037 0.00 0.00 0.00 1.85
3514 4873 5.855045 ACGGAGGAAGTATTAATCATGACC 58.145 41.667 0.00 0.00 0.00 4.02
3515 4874 6.581542 CGTACGGAGGAAGTATTAATCATGAC 59.418 42.308 7.57 0.00 0.00 3.06
3517 4876 6.675026 TCGTACGGAGGAAGTATTAATCATG 58.325 40.000 16.52 0.00 0.00 3.07
3523 4882 8.225603 AGTATTTTCGTACGGAGGAAGTATTA 57.774 34.615 16.52 0.00 31.42 0.98
3524 4883 7.105241 AGTATTTTCGTACGGAGGAAGTATT 57.895 36.000 16.52 1.84 31.42 1.89
3525 4884 6.705863 AGTATTTTCGTACGGAGGAAGTAT 57.294 37.500 16.52 4.32 31.42 2.12
3530 5028 4.218200 TGACAAGTATTTTCGTACGGAGGA 59.782 41.667 16.52 0.00 0.00 3.71
3535 5033 8.775884 CATTTTGATGACAAGTATTTTCGTACG 58.224 33.333 9.53 9.53 37.32 3.67
3538 5036 7.881142 TCCATTTTGATGACAAGTATTTTCGT 58.119 30.769 0.00 0.00 37.32 3.85
3555 5053 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3623 5121 6.598064 CCCTCCGTCTAAAAATACTTGTCATT 59.402 38.462 0.00 0.00 0.00 2.57
3631 5129 6.871844 AGTTACTCCCTCCGTCTAAAAATAC 58.128 40.000 0.00 0.00 0.00 1.89
3637 5135 3.055094 ACGTAGTTACTCCCTCCGTCTAA 60.055 47.826 0.00 0.00 37.78 2.10
3638 5136 2.501723 ACGTAGTTACTCCCTCCGTCTA 59.498 50.000 0.00 0.00 37.78 2.59
3639 5137 1.280421 ACGTAGTTACTCCCTCCGTCT 59.720 52.381 0.00 0.00 37.78 4.18
3654 5152 2.898705 AGACGGAGGTAGTACACGTAG 58.101 52.381 14.22 0.28 37.96 3.51
3656 5154 2.191128 AAGACGGAGGTAGTACACGT 57.809 50.000 14.16 14.16 40.85 4.49
3657 5155 2.227388 ACAAAGACGGAGGTAGTACACG 59.773 50.000 2.06 6.22 0.00 4.49
3658 5156 3.930634 ACAAAGACGGAGGTAGTACAC 57.069 47.619 2.06 0.00 0.00 2.90
3659 5157 4.942761 AAACAAAGACGGAGGTAGTACA 57.057 40.909 2.06 0.00 0.00 2.90
3660 5158 8.246871 ACTAATAAACAAAGACGGAGGTAGTAC 58.753 37.037 0.00 0.00 0.00 2.73
3661 5159 8.353423 ACTAATAAACAAAGACGGAGGTAGTA 57.647 34.615 0.00 0.00 0.00 1.82
3662 5160 7.237209 ACTAATAAACAAAGACGGAGGTAGT 57.763 36.000 0.00 0.00 0.00 2.73
3663 5161 8.543862 AAACTAATAAACAAAGACGGAGGTAG 57.456 34.615 0.00 0.00 0.00 3.18
3665 5163 7.812690 AAAACTAATAAACAAAGACGGAGGT 57.187 32.000 0.00 0.00 0.00 3.85
3700 5198 8.563732 GCTAAATCTTTTGGTTAAAATTTGGCA 58.436 29.630 8.48 0.00 38.56 4.92
3701 5199 8.783093 AGCTAAATCTTTTGGTTAAAATTTGGC 58.217 29.630 6.03 6.03 38.72 4.52
3803 5301 7.542477 ACAAAATGTTCACGTATGTCACAAAAA 59.458 29.630 0.00 0.00 0.00 1.94
3804 5302 7.030165 ACAAAATGTTCACGTATGTCACAAAA 58.970 30.769 0.00 0.00 0.00 2.44
3806 5304 6.125327 ACAAAATGTTCACGTATGTCACAA 57.875 33.333 0.00 0.00 0.00 3.33
3807 5305 5.743026 ACAAAATGTTCACGTATGTCACA 57.257 34.783 0.00 0.13 0.00 3.58
3809 5307 7.485418 ACTAACAAAATGTTCACGTATGTCA 57.515 32.000 0.00 0.00 40.22 3.58
3810 5308 9.866936 TTAACTAACAAAATGTTCACGTATGTC 57.133 29.630 0.00 0.00 40.22 3.06
3852 5350 8.928733 GGTCTTTAGTATTGTATTTCGTGTCAA 58.071 33.333 0.00 0.00 0.00 3.18
3853 5351 8.089597 TGGTCTTTAGTATTGTATTTCGTGTCA 58.910 33.333 0.00 0.00 0.00 3.58
3854 5352 8.470040 TGGTCTTTAGTATTGTATTTCGTGTC 57.530 34.615 0.00 0.00 0.00 3.67
3855 5353 8.836268 TTGGTCTTTAGTATTGTATTTCGTGT 57.164 30.769 0.00 0.00 0.00 4.49
3863 5361 9.675464 CCTGGTTTATTGGTCTTTAGTATTGTA 57.325 33.333 0.00 0.00 0.00 2.41
3864 5362 8.387813 TCCTGGTTTATTGGTCTTTAGTATTGT 58.612 33.333 0.00 0.00 0.00 2.71
3865 5363 8.674607 GTCCTGGTTTATTGGTCTTTAGTATTG 58.325 37.037 0.00 0.00 0.00 1.90
3866 5364 7.551617 CGTCCTGGTTTATTGGTCTTTAGTATT 59.448 37.037 0.00 0.00 0.00 1.89
3867 5365 7.046033 CGTCCTGGTTTATTGGTCTTTAGTAT 58.954 38.462 0.00 0.00 0.00 2.12
3868 5366 6.400568 CGTCCTGGTTTATTGGTCTTTAGTA 58.599 40.000 0.00 0.00 0.00 1.82
3869 5367 5.243207 CGTCCTGGTTTATTGGTCTTTAGT 58.757 41.667 0.00 0.00 0.00 2.24
3870 5368 4.634443 CCGTCCTGGTTTATTGGTCTTTAG 59.366 45.833 0.00 0.00 0.00 1.85
3871 5369 4.286549 TCCGTCCTGGTTTATTGGTCTTTA 59.713 41.667 0.00 0.00 39.52 1.85
3872 5370 3.073356 TCCGTCCTGGTTTATTGGTCTTT 59.927 43.478 0.00 0.00 39.52 2.52
3873 5371 2.640826 TCCGTCCTGGTTTATTGGTCTT 59.359 45.455 0.00 0.00 39.52 3.01
3874 5372 2.236395 CTCCGTCCTGGTTTATTGGTCT 59.764 50.000 0.00 0.00 39.52 3.85
3875 5373 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
3876 5374 1.339727 GCTCCGTCCTGGTTTATTGGT 60.340 52.381 0.00 0.00 39.52 3.67
3877 5375 1.065418 AGCTCCGTCCTGGTTTATTGG 60.065 52.381 0.00 0.00 39.52 3.16
3878 5376 2.403252 AGCTCCGTCCTGGTTTATTG 57.597 50.000 0.00 0.00 39.52 1.90
3879 5377 3.105283 ACTAGCTCCGTCCTGGTTTATT 58.895 45.455 0.00 0.00 39.52 1.40
3880 5378 2.748388 ACTAGCTCCGTCCTGGTTTAT 58.252 47.619 0.00 0.00 39.52 1.40
3881 5379 2.226962 ACTAGCTCCGTCCTGGTTTA 57.773 50.000 0.00 0.00 39.52 2.01
3882 5380 2.226962 TACTAGCTCCGTCCTGGTTT 57.773 50.000 0.00 0.00 39.52 3.27
3883 5381 2.032620 CATACTAGCTCCGTCCTGGTT 58.967 52.381 0.00 0.00 39.52 3.67
3884 5382 1.214673 TCATACTAGCTCCGTCCTGGT 59.785 52.381 0.00 0.00 39.52 4.00
3885 5383 1.982660 TCATACTAGCTCCGTCCTGG 58.017 55.000 0.00 0.00 40.09 4.45
3886 5384 2.952978 ACTTCATACTAGCTCCGTCCTG 59.047 50.000 0.00 0.00 0.00 3.86
3887 5385 3.300239 ACTTCATACTAGCTCCGTCCT 57.700 47.619 0.00 0.00 0.00 3.85
3888 5386 4.136051 AGTACTTCATACTAGCTCCGTCC 58.864 47.826 0.00 0.00 42.69 4.79
3889 5387 5.058490 AGAGTACTTCATACTAGCTCCGTC 58.942 45.833 0.00 0.00 44.64 4.79
3890 5388 5.038651 AGAGTACTTCATACTAGCTCCGT 57.961 43.478 0.00 0.00 44.64 4.69
3891 5389 6.380095 AAAGAGTACTTCATACTAGCTCCG 57.620 41.667 0.00 0.00 44.64 4.63
3892 5390 6.513720 CGGAAAGAGTACTTCATACTAGCTCC 60.514 46.154 0.00 0.00 44.64 4.70
3893 5391 6.038492 ACGGAAAGAGTACTTCATACTAGCTC 59.962 42.308 0.00 0.00 44.64 4.09
3894 5392 5.887035 ACGGAAAGAGTACTTCATACTAGCT 59.113 40.000 0.00 0.00 44.64 3.32
3895 5393 6.134040 ACGGAAAGAGTACTTCATACTAGC 57.866 41.667 0.00 0.00 44.64 3.42
3896 5394 7.911205 CAGAACGGAAAGAGTACTTCATACTAG 59.089 40.741 0.00 0.00 44.64 2.57
3897 5395 7.609146 TCAGAACGGAAAGAGTACTTCATACTA 59.391 37.037 0.00 0.00 44.64 1.82
3899 5397 6.618811 TCAGAACGGAAAGAGTACTTCATAC 58.381 40.000 0.00 0.00 35.05 2.39
3900 5398 6.829229 TCAGAACGGAAAGAGTACTTCATA 57.171 37.500 0.00 0.00 35.05 2.15
3901 5399 5.723672 TCAGAACGGAAAGAGTACTTCAT 57.276 39.130 0.00 0.00 35.05 2.57
3902 5400 5.524971 TTCAGAACGGAAAGAGTACTTCA 57.475 39.130 0.00 0.00 35.05 3.02
3903 5401 8.027771 TCTATTTCAGAACGGAAAGAGTACTTC 58.972 37.037 16.55 0.00 43.25 3.01
3904 5402 7.893658 TCTATTTCAGAACGGAAAGAGTACTT 58.106 34.615 16.55 0.00 43.25 2.24
3905 5403 7.463961 TCTATTTCAGAACGGAAAGAGTACT 57.536 36.000 16.55 0.00 43.25 2.73
3906 5404 7.974501 TCATCTATTTCAGAACGGAAAGAGTAC 59.025 37.037 16.55 0.00 43.25 2.73
3907 5405 7.974501 GTCATCTATTTCAGAACGGAAAGAGTA 59.025 37.037 16.55 8.30 43.25 2.59
3908 5406 6.814146 GTCATCTATTTCAGAACGGAAAGAGT 59.186 38.462 16.55 6.63 43.25 3.24
3909 5407 7.038659 AGTCATCTATTTCAGAACGGAAAGAG 58.961 38.462 12.97 12.97 43.81 2.85
3910 5408 6.936279 AGTCATCTATTTCAGAACGGAAAGA 58.064 36.000 6.34 1.59 39.88 2.52
3911 5409 8.596380 GTTAGTCATCTATTTCAGAACGGAAAG 58.404 37.037 6.34 0.00 39.88 2.62
3912 5410 8.311836 AGTTAGTCATCTATTTCAGAACGGAAA 58.688 33.333 3.09 3.09 40.72 3.13
3913 5411 7.837863 AGTTAGTCATCTATTTCAGAACGGAA 58.162 34.615 0.00 0.00 36.67 4.30
3914 5412 7.406031 AGTTAGTCATCTATTTCAGAACGGA 57.594 36.000 0.00 0.00 36.67 4.69
3915 5413 8.480643 AAAGTTAGTCATCTATTTCAGAACGG 57.519 34.615 0.00 0.00 36.67 4.44
3957 5455 8.512138 CCGTCCAAAATTAGATAACTCAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
3958 5456 7.881232 TCCGTCCAAAATTAGATAACTCAACTT 59.119 33.333 0.00 0.00 0.00 2.66
3959 5457 7.391620 TCCGTCCAAAATTAGATAACTCAACT 58.608 34.615 0.00 0.00 0.00 3.16
3960 5458 7.201617 CCTCCGTCCAAAATTAGATAACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
3961 5459 6.821665 CCTCCGTCCAAAATTAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
3962 5460 6.346096 CCTCCGTCCAAAATTAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
3963 5461 5.758784 CCCTCCGTCCAAAATTAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
3964 5462 5.427481 TCCCTCCGTCCAAAATTAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
3965 5463 5.677567 TCCCTCCGTCCAAAATTAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
3966 5464 5.427481 ACTCCCTCCGTCCAAAATTAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
3967 5465 4.966805 ACTCCCTCCGTCCAAAATTAGATA 59.033 41.667 0.00 0.00 0.00 1.98
3968 5466 3.780850 ACTCCCTCCGTCCAAAATTAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3969 5467 3.178865 ACTCCCTCCGTCCAAAATTAGA 58.821 45.455 0.00 0.00 0.00 2.10
3970 5468 3.629142 ACTCCCTCCGTCCAAAATTAG 57.371 47.619 0.00 0.00 0.00 1.73
3971 5469 3.119029 CGTACTCCCTCCGTCCAAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
3972 5470 2.354403 CGTACTCCCTCCGTCCAAAATT 60.354 50.000 0.00 0.00 0.00 1.82
3973 5471 1.206371 CGTACTCCCTCCGTCCAAAAT 59.794 52.381 0.00 0.00 0.00 1.82
3974 5472 0.604578 CGTACTCCCTCCGTCCAAAA 59.395 55.000 0.00 0.00 0.00 2.44
3975 5473 0.540365 ACGTACTCCCTCCGTCCAAA 60.540 55.000 0.00 0.00 0.00 3.28
3976 5474 0.327924 TACGTACTCCCTCCGTCCAA 59.672 55.000 0.00 0.00 36.12 3.53
3977 5475 0.327924 TTACGTACTCCCTCCGTCCA 59.672 55.000 0.00 0.00 36.12 4.02
3978 5476 1.020437 CTTACGTACTCCCTCCGTCC 58.980 60.000 0.00 0.00 36.12 4.79
3979 5477 2.029838 TCTTACGTACTCCCTCCGTC 57.970 55.000 0.00 0.00 36.12 4.79
3980 5478 2.496899 TTCTTACGTACTCCCTCCGT 57.503 50.000 0.00 0.00 38.53 4.69
3993 5491 4.675510 CCATCACATGGTGCATTTCTTAC 58.324 43.478 0.00 0.00 45.54 2.34
3994 5492 4.987408 CCATCACATGGTGCATTTCTTA 57.013 40.909 0.00 0.00 45.54 2.10
4013 5574 0.681733 GGTCACAAGACTCAGAGCCA 59.318 55.000 0.00 0.00 44.36 4.75
4015 5576 3.523806 GGGTCACAAGACTCAGAGC 57.476 57.895 0.00 0.00 44.96 4.09
4021 5582 1.445942 CACGGTGGGTCACAAGACT 59.554 57.895 0.00 0.00 44.36 3.24
4023 5584 2.110213 GCACGGTGGGTCACAAGA 59.890 61.111 10.60 0.00 35.86 3.02
4034 5595 2.492449 CTGTCATCAGTCGGCACGGT 62.492 60.000 0.00 0.00 42.11 4.83
4035 5596 1.807165 CTGTCATCAGTCGGCACGG 60.807 63.158 0.00 0.00 42.11 4.94
4036 5597 1.807165 CCTGTCATCAGTCGGCACG 60.807 63.158 0.00 0.00 45.78 5.34
4037 5598 2.103042 GCCTGTCATCAGTCGGCAC 61.103 63.158 0.00 0.00 39.82 5.01
4038 5599 2.265739 GCCTGTCATCAGTCGGCA 59.734 61.111 0.00 0.00 39.82 5.69
4039 5600 2.887568 CGCCTGTCATCAGTCGGC 60.888 66.667 0.00 0.00 39.02 5.54
4041 5602 2.887568 GCCGCCTGTCATCAGTCG 60.888 66.667 0.00 0.00 41.76 4.18
4042 5603 2.887568 CGCCGCCTGTCATCAGTC 60.888 66.667 0.00 0.00 39.82 3.51
4446 6010 4.722700 ACGGCCATCACCAGGTGC 62.723 66.667 15.64 2.54 32.98 5.01
4665 6241 0.585357 GGCACATGATCATGACGAGC 59.415 55.000 36.37 29.52 41.20 5.03
4761 6341 0.454285 CACGCAACCGCAACCTAATG 60.454 55.000 0.00 0.00 38.40 1.90
5189 6769 2.665185 GCGTCGGTGTTCTTGGCT 60.665 61.111 0.00 0.00 0.00 4.75
5449 7038 1.059692 CTAGCGCAGACAACGAATGTG 59.940 52.381 11.47 0.00 44.12 3.21
5527 7116 2.005370 ACGGAACCACTCCTCTTGTA 57.995 50.000 0.00 0.00 42.85 2.41
5528 7117 1.617357 GTACGGAACCACTCCTCTTGT 59.383 52.381 0.00 0.00 42.85 3.16
5529 7118 1.616865 TGTACGGAACCACTCCTCTTG 59.383 52.381 0.00 0.00 42.85 3.02
5533 7122 1.069668 GTGTTGTACGGAACCACTCCT 59.930 52.381 0.00 0.00 42.85 3.69
5540 7129 0.886043 GGGGTGGTGTTGTACGGAAC 60.886 60.000 0.00 0.00 0.00 3.62
5544 7133 0.686224 TTAGGGGGTGGTGTTGTACG 59.314 55.000 0.00 0.00 0.00 3.67
6062 7729 4.137116 TCCATTTTCTCCGATGACGAAT 57.863 40.909 0.00 0.00 42.66 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.