Multiple sequence alignment - TraesCS2D01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G318400 chr2D 100.000 7090 0 0 1 7090 408343549 408350638 0.000000e+00 13093.0
1 TraesCS2D01G318400 chr2D 97.117 1006 22 4 3511 4516 375262138 375261140 0.000000e+00 1690.0
2 TraesCS2D01G318400 chr2D 88.750 400 42 3 1 398 596576006 596575608 2.970000e-133 486.0
3 TraesCS2D01G318400 chr2D 96.698 212 6 1 2237 2448 107698162 107698372 1.130000e-92 351.0
4 TraesCS2D01G318400 chrUn 99.174 1210 10 0 3509 4718 147949614 147948405 0.000000e+00 2180.0
5 TraesCS2D01G318400 chrUn 95.305 213 10 0 2237 2449 171112391 171112603 8.810000e-89 339.0
6 TraesCS2D01G318400 chrUn 95.305 213 9 1 2237 2449 138484939 138484728 3.170000e-88 337.0
7 TraesCS2D01G318400 chrUn 94.366 213 11 1 2237 2449 138272143 138271932 6.860000e-85 326.0
8 TraesCS2D01G318400 chrUn 94.366 213 11 1 2237 2449 172123455 172123666 6.860000e-85 326.0
9 TraesCS2D01G318400 chr7D 97.767 1209 21 3 3509 4716 516070003 516071206 0.000000e+00 2078.0
10 TraesCS2D01G318400 chr7D 97.510 1205 22 5 3510 4713 478075562 478076759 0.000000e+00 2052.0
11 TraesCS2D01G318400 chr7D 93.263 1232 38 23 3509 4714 41368805 41367593 0.000000e+00 1773.0
12 TraesCS2D01G318400 chr7D 98.520 946 12 2 3510 4455 139939235 139938292 0.000000e+00 1668.0
13 TraesCS2D01G318400 chr7D 96.215 1004 32 3 3513 4516 592315243 592314246 0.000000e+00 1639.0
14 TraesCS2D01G318400 chr7D 89.034 383 40 2 4 384 80326710 80327092 2.310000e-129 473.0
15 TraesCS2D01G318400 chr7D 89.855 276 4 9 4447 4715 633340941 633340683 4.100000e-87 333.0
16 TraesCS2D01G318400 chr7D 93.151 219 1 4 4480 4684 139938179 139937961 6.910000e-80 309.0
17 TraesCS2D01G318400 chr2B 89.496 1390 101 24 4733 6114 483663855 483665207 0.000000e+00 1716.0
18 TraesCS2D01G318400 chr2B 86.326 724 45 21 1445 2155 483659841 483660523 0.000000e+00 739.0
19 TraesCS2D01G318400 chr2B 86.482 614 51 12 6498 7090 483677026 483677628 0.000000e+00 645.0
20 TraesCS2D01G318400 chr2B 91.391 453 36 2 3018 3467 483663324 483663776 1.010000e-172 617.0
21 TraesCS2D01G318400 chr2B 90.556 360 21 8 945 1303 483659347 483659694 1.390000e-126 464.0
22 TraesCS2D01G318400 chr2B 95.327 107 3 2 784 890 483659241 483659345 1.220000e-37 169.0
23 TraesCS2D01G318400 chr2B 96.809 94 2 1 6117 6209 483676399 483676492 9.520000e-34 156.0
24 TraesCS2D01G318400 chr2B 88.095 126 9 4 1302 1427 483659737 483659856 2.060000e-30 145.0
25 TraesCS2D01G318400 chr2B 84.783 138 21 0 6334 6471 483657801 483657938 9.590000e-29 139.0
26 TraesCS2D01G318400 chr2B 97.059 34 1 0 6414 6447 483657961 483657994 2.760000e-04 58.4
27 TraesCS2D01G318400 chr1D 98.736 949 11 1 3507 4455 149532878 149533825 0.000000e+00 1685.0
28 TraesCS2D01G318400 chr1D 96.032 1008 33 4 3509 4516 486710568 486709568 0.000000e+00 1633.0
29 TraesCS2D01G318400 chr1D 88.442 398 42 3 1 396 469610407 469610802 1.790000e-130 477.0
30 TraesCS2D01G318400 chr1D 87.688 398 47 2 3 398 375352960 375353357 5.010000e-126 462.0
31 TraesCS2D01G318400 chr1D 89.967 299 8 9 4444 4720 149533887 149534185 4.040000e-97 366.0
32 TraesCS2D01G318400 chr3D 96.822 1007 26 3 3510 4516 388788966 388789966 0.000000e+00 1677.0
33 TraesCS2D01G318400 chr3D 88.071 394 43 4 4 395 532084599 532084208 1.390000e-126 464.0
34 TraesCS2D01G318400 chr3D 90.426 282 6 8 4453 4729 2989768 2989503 1.130000e-92 351.0
35 TraesCS2D01G318400 chr2A 91.910 890 61 4 3 890 576334587 576335467 0.000000e+00 1234.0
36 TraesCS2D01G318400 chr2A 88.889 900 87 9 2578 3467 576337572 576338468 0.000000e+00 1096.0
37 TraesCS2D01G318400 chr2A 90.660 803 57 14 1445 2237 576335935 576336729 0.000000e+00 1051.0
38 TraesCS2D01G318400 chr2A 92.054 667 51 2 4735 5401 576338550 576339214 0.000000e+00 937.0
39 TraesCS2D01G318400 chr2A 90.604 596 46 6 5528 6114 576339334 576339928 0.000000e+00 782.0
40 TraesCS2D01G318400 chr2A 94.251 487 20 4 945 1427 576335469 576335951 0.000000e+00 737.0
41 TraesCS2D01G318400 chr2A 82.453 587 81 10 6246 6811 576351743 576352328 1.780000e-135 494.0
42 TraesCS2D01G318400 chr2A 96.774 124 4 0 1215 1338 576332248 576332371 2.590000e-49 207.0
43 TraesCS2D01G318400 chr2A 93.333 135 8 1 6116 6249 576341397 576341531 1.560000e-46 198.0
44 TraesCS2D01G318400 chr2A 96.970 33 1 0 914 946 672113304 672113272 1.000000e-03 56.5
45 TraesCS2D01G318400 chr6D 88.500 400 43 3 1 397 68328996 68329395 1.380000e-131 481.0
46 TraesCS2D01G318400 chr6D 88.768 276 7 9 4447 4715 38237493 38237235 4.130000e-82 316.0
47 TraesCS2D01G318400 chr4D 88.500 400 42 4 1 398 357507595 357507198 1.380000e-131 481.0
48 TraesCS2D01G318400 chr4D 88.112 286 6 10 4444 4718 73231663 73231931 1.480000e-81 315.0
49 TraesCS2D01G318400 chr7A 87.500 400 47 3 1 398 6799441 6799043 6.480000e-125 459.0
50 TraesCS2D01G318400 chr3B 87.500 400 47 3 1 398 820720929 820720531 6.480000e-125 459.0
51 TraesCS2D01G318400 chr3B 97.368 38 1 0 909 946 65211308 65211271 1.650000e-06 65.8
52 TraesCS2D01G318400 chr6A 94.836 213 10 1 2237 2449 558457496 558457707 1.470000e-86 331.0
53 TraesCS2D01G318400 chr6A 94.836 213 10 1 2237 2449 558460816 558461027 1.470000e-86 331.0
54 TraesCS2D01G318400 chr6A 94.366 213 11 1 2237 2449 558552553 558552764 6.860000e-85 326.0
55 TraesCS2D01G318400 chr6A 93.578 218 13 1 2236 2453 542705074 542704858 2.470000e-84 324.0
56 TraesCS2D01G318400 chr3A 97.143 35 1 0 914 948 745518541 745518575 7.680000e-05 60.2
57 TraesCS2D01G318400 chr6B 97.059 34 1 0 914 947 693931801 693931768 2.760000e-04 58.4
58 TraesCS2D01G318400 chr7B 96.970 33 1 0 914 946 522147645 522147613 1.000000e-03 56.5
59 TraesCS2D01G318400 chr7B 94.595 37 1 1 915 950 729228484 729228448 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G318400 chr2D 408343549 408350638 7089 False 13093.000 13093 100.000000 1 7090 1 chr2D.!!$F2 7089
1 TraesCS2D01G318400 chr2D 375261140 375262138 998 True 1690.000 1690 97.117000 3511 4516 1 chr2D.!!$R1 1005
2 TraesCS2D01G318400 chrUn 147948405 147949614 1209 True 2180.000 2180 99.174000 3509 4718 1 chrUn.!!$R3 1209
3 TraesCS2D01G318400 chr7D 516070003 516071206 1203 False 2078.000 2078 97.767000 3509 4716 1 chr7D.!!$F3 1207
4 TraesCS2D01G318400 chr7D 478075562 478076759 1197 False 2052.000 2052 97.510000 3510 4713 1 chr7D.!!$F2 1203
5 TraesCS2D01G318400 chr7D 41367593 41368805 1212 True 1773.000 1773 93.263000 3509 4714 1 chr7D.!!$R1 1205
6 TraesCS2D01G318400 chr7D 592314246 592315243 997 True 1639.000 1639 96.215000 3513 4516 1 chr7D.!!$R2 1003
7 TraesCS2D01G318400 chr7D 139937961 139939235 1274 True 988.500 1668 95.835500 3510 4684 2 chr7D.!!$R4 1174
8 TraesCS2D01G318400 chr2B 483657801 483665207 7406 False 505.925 1716 90.379125 784 6471 8 chr2B.!!$F1 5687
9 TraesCS2D01G318400 chr2B 483676399 483677628 1229 False 400.500 645 91.645500 6117 7090 2 chr2B.!!$F2 973
10 TraesCS2D01G318400 chr1D 486709568 486710568 1000 True 1633.000 1633 96.032000 3509 4516 1 chr1D.!!$R1 1007
11 TraesCS2D01G318400 chr1D 149532878 149534185 1307 False 1025.500 1685 94.351500 3507 4720 2 chr1D.!!$F3 1213
12 TraesCS2D01G318400 chr3D 388788966 388789966 1000 False 1677.000 1677 96.822000 3510 4516 1 chr3D.!!$F1 1006
13 TraesCS2D01G318400 chr2A 576332248 576341531 9283 False 780.250 1234 92.309375 3 6249 8 chr2A.!!$F2 6246
14 TraesCS2D01G318400 chr2A 576351743 576352328 585 False 494.000 494 82.453000 6246 6811 1 chr2A.!!$F1 565
15 TraesCS2D01G318400 chr6A 558457496 558461027 3531 False 331.000 331 94.836000 2237 2449 2 chr6A.!!$F2 212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 3245 0.041386 AAAGCTACTCCCTCCGTCCT 59.959 55.000 0.00 0.00 0.00 3.85 F
2199 4637 0.035056 CCAATCTCCCAGACCACACC 60.035 60.000 0.00 0.00 0.00 4.16 F
2453 4892 0.179018 GCAAGCCGGATCCCACTTAT 60.179 55.000 5.05 0.00 0.00 1.73 F
2501 4940 1.338674 CCCTCCTTGTGCACATCGTAA 60.339 52.381 22.39 3.88 0.00 3.18 F
3414 8028 0.244450 CCGTCAACATTGCCATGCTT 59.756 50.000 0.00 0.00 33.05 3.91 F
3479 8139 0.038166 CAGGTATGCGGGGGCAATAT 59.962 55.000 0.00 0.00 0.00 1.28 F
4897 11452 0.174845 CTTCACGAACCGCATCCCTA 59.825 55.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 4825 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.0 0.00 0.0 0.00 5.68 R
3264 7878 0.025001 CGGCGATGAACAACGATGAC 59.975 55.0 0.00 0.0 0.00 3.06 R
3267 7881 0.173935 TACCGGCGATGAACAACGAT 59.826 50.0 9.30 0.0 0.00 3.73 R
3468 8082 0.883833 GATGCTCAATATTGCCCCCG 59.116 55.0 10.76 0.0 0.00 5.73 R
5373 11928 0.035152 AGAGCAACATGCCGATTCCA 60.035 50.0 0.00 0.0 46.52 3.53 R
5415 11970 1.765161 CGCAGTGACGGTATGGCATG 61.765 60.0 10.98 0.0 0.00 4.06 R
6478 14856 0.035820 TCCAAACACCGTATCCTGGC 60.036 55.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 2361 4.806247 CGGAAGTATCCAATCTGAAGACAC 59.194 45.833 0.00 0.00 46.97 3.67
24 2362 5.624509 CGGAAGTATCCAATCTGAAGACACA 60.625 44.000 0.00 0.00 46.97 3.72
36 2374 4.984785 TCTGAAGACACATGAAGAAAGACG 59.015 41.667 0.00 0.00 0.00 4.18
39 2377 5.234329 TGAAGACACATGAAGAAAGACGAAC 59.766 40.000 0.00 0.00 0.00 3.95
43 2381 6.260936 AGACACATGAAGAAAGACGAACAAAT 59.739 34.615 0.00 0.00 0.00 2.32
55 2393 3.184541 ACGAACAAATACCGAATCCGAG 58.815 45.455 0.00 0.00 38.22 4.63
56 2394 3.184541 CGAACAAATACCGAATCCGAGT 58.815 45.455 0.00 0.00 38.22 4.18
112 2450 4.988716 TCCGCCGGAGACACACCT 62.989 66.667 5.05 0.00 0.00 4.00
120 2458 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
133 2471 3.499737 CACGCCCTCCGACAATGC 61.500 66.667 0.00 0.00 41.02 3.56
139 2477 0.824109 CCCTCCGACAATGCTAGACA 59.176 55.000 0.00 0.00 0.00 3.41
146 2484 2.604914 CGACAATGCTAGACACACCATC 59.395 50.000 0.00 0.00 0.00 3.51
170 2508 3.717294 GGAGCTTGGCGGGGAGAA 61.717 66.667 0.00 0.00 0.00 2.87
178 2516 0.996583 TGGCGGGGAGAACCTTATTT 59.003 50.000 0.00 0.00 40.03 1.40
185 2523 5.193679 CGGGGAGAACCTTATTTCATCTTT 58.806 41.667 0.00 0.00 40.03 2.52
199 2537 1.327764 CATCTTTAAGAAGCCGCCGTC 59.672 52.381 0.00 0.00 32.75 4.79
213 2551 1.066114 GCCGTCGTCTCGTCTTCTTG 61.066 60.000 0.00 0.00 0.00 3.02
234 2573 5.235850 TGAGCAGGACATAAACCTAACAA 57.764 39.130 0.00 0.00 35.84 2.83
237 2576 6.719370 TGAGCAGGACATAAACCTAACAAAAT 59.281 34.615 0.00 0.00 35.84 1.82
238 2577 7.232534 TGAGCAGGACATAAACCTAACAAAATT 59.767 33.333 0.00 0.00 35.84 1.82
243 2582 9.758651 AGGACATAAACCTAACAAAATTTGAAC 57.241 29.630 13.19 0.00 35.84 3.18
250 2589 6.639563 ACCTAACAAAATTTGAACAAGCACT 58.360 32.000 13.19 0.00 0.00 4.40
292 2631 1.682849 CAAGGACCGGAATCCACCA 59.317 57.895 9.46 0.00 41.73 4.17
294 2633 2.125269 GGACCGGAATCCACCACG 60.125 66.667 9.46 0.00 38.77 4.94
305 2644 2.268920 CACCACGCACCCATAGCT 59.731 61.111 0.00 0.00 0.00 3.32
322 2661 2.784347 AGCTCTAAGGCCACAAAAGAC 58.216 47.619 5.01 0.00 0.00 3.01
326 2665 2.103432 TCTAAGGCCACAAAAGACGTGA 59.897 45.455 5.01 0.00 36.43 4.35
327 2666 1.757682 AAGGCCACAAAAGACGTGAA 58.242 45.000 5.01 0.00 36.43 3.18
337 2676 0.736325 AAGACGTGAAAGATCGGCGG 60.736 55.000 7.21 0.00 40.28 6.13
340 2679 2.813908 GTGAAAGATCGGCGGCGT 60.814 61.111 31.06 18.29 0.00 5.68
367 2706 1.690985 GGAGGCAGGAACCCTAGCT 60.691 63.158 0.00 0.00 31.41 3.32
399 2738 1.078356 GGAAAGACGAAGGGAGGGC 60.078 63.158 0.00 0.00 0.00 5.19
424 2763 1.990799 TGAGCCAACGTACTCGAATG 58.009 50.000 8.19 0.00 40.62 2.67
425 2764 0.645868 GAGCCAACGTACTCGAATGC 59.354 55.000 0.00 0.00 40.62 3.56
426 2765 0.246635 AGCCAACGTACTCGAATGCT 59.753 50.000 0.00 0.00 40.62 3.79
427 2766 1.076332 GCCAACGTACTCGAATGCTT 58.924 50.000 0.00 0.00 40.62 3.91
428 2767 2.094390 AGCCAACGTACTCGAATGCTTA 60.094 45.455 0.00 0.00 40.62 3.09
429 2768 2.864343 GCCAACGTACTCGAATGCTTAT 59.136 45.455 0.00 0.00 40.62 1.73
430 2769 3.308866 GCCAACGTACTCGAATGCTTATT 59.691 43.478 0.00 0.00 40.62 1.40
431 2770 4.201783 GCCAACGTACTCGAATGCTTATTT 60.202 41.667 0.00 0.00 40.62 1.40
448 2787 9.868160 ATGCTTATTTTATAAACCTAAGGCTCT 57.132 29.630 19.07 8.30 0.00 4.09
499 2839 8.028938 AGATGTTTGACATAAAATGGTAGTTGC 58.971 33.333 0.00 0.00 39.27 4.17
514 2854 1.446445 TTGCGGCGTATACGTTGCT 60.446 52.632 30.03 0.00 42.22 3.91
517 2857 1.415288 GCGGCGTATACGTTGCTTCA 61.415 55.000 26.09 0.00 42.22 3.02
528 2868 2.816087 ACGTTGCTTCATTGCTTCAGAT 59.184 40.909 0.00 0.00 0.00 2.90
552 2892 4.168760 GTGGCATGTGCTTTTATTCTCAC 58.831 43.478 4.84 0.00 41.70 3.51
648 2988 1.720852 GCACAAAAATGTGGATCGTGC 59.279 47.619 10.62 0.00 41.12 5.34
725 3065 6.041069 AGCAGTAGGTGTATCTAAGTCCAATC 59.959 42.308 0.00 0.00 0.00 2.67
758 3098 4.895297 TCTGTCATTTTGCTCTTCCCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
890 3230 5.177696 CCACTTGTGTGTAGACTTAGAAAGC 59.822 44.000 0.00 0.00 42.34 3.51
891 3231 5.986135 CACTTGTGTGTAGACTTAGAAAGCT 59.014 40.000 0.00 0.00 39.24 3.74
892 3232 7.145985 CACTTGTGTGTAGACTTAGAAAGCTA 58.854 38.462 0.00 0.00 39.24 3.32
893 3233 7.115095 CACTTGTGTGTAGACTTAGAAAGCTAC 59.885 40.741 0.00 11.21 39.24 3.58
894 3234 6.896021 TGTGTGTAGACTTAGAAAGCTACT 57.104 37.500 15.60 0.00 38.16 2.57
895 3235 6.910995 TGTGTGTAGACTTAGAAAGCTACTC 58.089 40.000 15.60 13.65 38.16 2.59
896 3236 6.072064 TGTGTGTAGACTTAGAAAGCTACTCC 60.072 42.308 15.60 10.35 38.16 3.85
897 3237 5.418209 TGTGTAGACTTAGAAAGCTACTCCC 59.582 44.000 15.60 8.92 38.16 4.30
898 3238 5.653330 GTGTAGACTTAGAAAGCTACTCCCT 59.347 44.000 15.60 0.00 38.16 4.20
899 3239 5.887035 TGTAGACTTAGAAAGCTACTCCCTC 59.113 44.000 15.60 0.00 38.16 4.30
900 3240 4.283337 AGACTTAGAAAGCTACTCCCTCC 58.717 47.826 0.00 0.00 0.00 4.30
901 3241 3.025262 ACTTAGAAAGCTACTCCCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
902 3242 2.822707 TAGAAAGCTACTCCCTCCGT 57.177 50.000 0.00 0.00 0.00 4.69
903 3243 1.476477 AGAAAGCTACTCCCTCCGTC 58.524 55.000 0.00 0.00 0.00 4.79
904 3244 0.460722 GAAAGCTACTCCCTCCGTCC 59.539 60.000 0.00 0.00 0.00 4.79
905 3245 0.041386 AAAGCTACTCCCTCCGTCCT 59.959 55.000 0.00 0.00 0.00 3.85
906 3246 0.924823 AAGCTACTCCCTCCGTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
907 3247 0.924823 AGCTACTCCCTCCGTCCTAA 59.075 55.000 0.00 0.00 0.00 2.69
908 3248 1.499870 AGCTACTCCCTCCGTCCTAAT 59.500 52.381 0.00 0.00 0.00 1.73
909 3249 1.614413 GCTACTCCCTCCGTCCTAATG 59.386 57.143 0.00 0.00 0.00 1.90
910 3250 2.946785 CTACTCCCTCCGTCCTAATGT 58.053 52.381 0.00 0.00 0.00 2.71
911 3251 2.249309 ACTCCCTCCGTCCTAATGTT 57.751 50.000 0.00 0.00 0.00 2.71
912 3252 1.831736 ACTCCCTCCGTCCTAATGTTG 59.168 52.381 0.00 0.00 0.00 3.33
913 3253 2.108168 CTCCCTCCGTCCTAATGTTGA 58.892 52.381 0.00 0.00 0.00 3.18
914 3254 2.500098 CTCCCTCCGTCCTAATGTTGAA 59.500 50.000 0.00 0.00 0.00 2.69
915 3255 2.907696 TCCCTCCGTCCTAATGTTGAAA 59.092 45.455 0.00 0.00 0.00 2.69
916 3256 3.328343 TCCCTCCGTCCTAATGTTGAAAA 59.672 43.478 0.00 0.00 0.00 2.29
917 3257 4.018779 TCCCTCCGTCCTAATGTTGAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
918 3258 4.096382 CCCTCCGTCCTAATGTTGAAAATG 59.904 45.833 0.00 0.00 0.00 2.32
919 3259 4.700213 CCTCCGTCCTAATGTTGAAAATGT 59.300 41.667 0.00 0.00 0.00 2.71
920 3260 5.183140 CCTCCGTCCTAATGTTGAAAATGTT 59.817 40.000 0.00 0.00 0.00 2.71
921 3261 6.294508 CCTCCGTCCTAATGTTGAAAATGTTT 60.295 38.462 0.00 0.00 0.00 2.83
922 3262 7.045126 TCCGTCCTAATGTTGAAAATGTTTT 57.955 32.000 0.00 0.00 0.00 2.43
923 3263 7.493367 TCCGTCCTAATGTTGAAAATGTTTTT 58.507 30.769 0.00 0.00 0.00 1.94
924 3264 8.630917 TCCGTCCTAATGTTGAAAATGTTTTTA 58.369 29.630 0.00 0.00 0.00 1.52
925 3265 9.418045 CCGTCCTAATGTTGAAAATGTTTTTAT 57.582 29.630 0.00 0.00 0.00 1.40
940 3280 7.996098 ATGTTTTTATATTATGGGACCGAGG 57.004 36.000 0.00 0.00 0.00 4.63
941 3281 6.300703 TGTTTTTATATTATGGGACCGAGGG 58.699 40.000 0.00 0.00 0.00 4.30
942 3282 6.101442 TGTTTTTATATTATGGGACCGAGGGA 59.899 38.462 0.00 0.00 0.00 4.20
943 3283 6.368779 TTTTATATTATGGGACCGAGGGAG 57.631 41.667 0.00 0.00 0.00 4.30
1362 3749 1.862201 CAAGCGTGTCTCCGTTGTTAA 59.138 47.619 0.00 0.00 0.00 2.01
1365 3752 3.916761 AGCGTGTCTCCGTTGTTAATTA 58.083 40.909 0.00 0.00 0.00 1.40
1369 3756 5.605327 CGTGTCTCCGTTGTTAATTAGTTG 58.395 41.667 0.00 0.00 0.00 3.16
1370 3757 5.389098 CGTGTCTCCGTTGTTAATTAGTTGG 60.389 44.000 0.00 0.00 0.00 3.77
1371 3758 5.467735 GTGTCTCCGTTGTTAATTAGTTGGT 59.532 40.000 0.00 0.00 0.00 3.67
1372 3759 5.697633 TGTCTCCGTTGTTAATTAGTTGGTC 59.302 40.000 0.00 0.00 0.00 4.02
1373 3760 5.121298 GTCTCCGTTGTTAATTAGTTGGTCC 59.879 44.000 0.00 0.00 0.00 4.46
1408 3795 9.607285 TTTAATGAAGCGAAAATAAGAAGTCAC 57.393 29.630 0.00 0.00 0.00 3.67
1410 3797 6.228273 TGAAGCGAAAATAAGAAGTCACTG 57.772 37.500 0.00 0.00 0.00 3.66
1411 3798 5.758296 TGAAGCGAAAATAAGAAGTCACTGT 59.242 36.000 0.00 0.00 0.00 3.55
1417 3804 7.095774 GCGAAAATAAGAAGTCACTGTAGTCAA 60.096 37.037 0.00 0.00 0.00 3.18
1418 3805 8.428536 CGAAAATAAGAAGTCACTGTAGTCAAG 58.571 37.037 0.00 0.00 0.00 3.02
1419 3806 9.262358 GAAAATAAGAAGTCACTGTAGTCAAGT 57.738 33.333 0.00 0.00 0.00 3.16
1420 3807 9.614792 AAAATAAGAAGTCACTGTAGTCAAGTT 57.385 29.630 0.00 0.00 0.00 2.66
1421 3808 8.819643 AATAAGAAGTCACTGTAGTCAAGTTC 57.180 34.615 0.00 0.00 0.00 3.01
1422 3809 5.854010 AGAAGTCACTGTAGTCAAGTTCA 57.146 39.130 11.26 0.00 0.00 3.18
1423 3810 6.222038 AGAAGTCACTGTAGTCAAGTTCAA 57.778 37.500 11.26 0.00 0.00 2.69
1424 3811 6.821388 AGAAGTCACTGTAGTCAAGTTCAAT 58.179 36.000 11.26 0.00 0.00 2.57
1425 3812 6.926272 AGAAGTCACTGTAGTCAAGTTCAATC 59.074 38.462 11.26 0.00 0.00 2.67
1426 3813 6.412362 AGTCACTGTAGTCAAGTTCAATCT 57.588 37.500 0.00 0.00 0.00 2.40
1427 3814 6.821388 AGTCACTGTAGTCAAGTTCAATCTT 58.179 36.000 0.00 0.00 0.00 2.40
1428 3815 7.275920 AGTCACTGTAGTCAAGTTCAATCTTT 58.724 34.615 0.00 0.00 0.00 2.52
1429 3816 7.770897 AGTCACTGTAGTCAAGTTCAATCTTTT 59.229 33.333 0.00 0.00 0.00 2.27
1430 3817 8.064814 GTCACTGTAGTCAAGTTCAATCTTTTC 58.935 37.037 0.00 0.00 0.00 2.29
1431 3818 7.987458 TCACTGTAGTCAAGTTCAATCTTTTCT 59.013 33.333 0.00 0.00 0.00 2.52
1432 3819 8.279103 CACTGTAGTCAAGTTCAATCTTTTCTC 58.721 37.037 0.00 0.00 0.00 2.87
1433 3820 7.987458 ACTGTAGTCAAGTTCAATCTTTTCTCA 59.013 33.333 0.00 0.00 0.00 3.27
1434 3821 8.731275 TGTAGTCAAGTTCAATCTTTTCTCAA 57.269 30.769 0.00 0.00 0.00 3.02
1435 3822 9.173021 TGTAGTCAAGTTCAATCTTTTCTCAAA 57.827 29.630 0.00 0.00 0.00 2.69
1526 3915 5.459762 CGGCAAGGAATTTAAATATGTGCTG 59.540 40.000 18.05 16.56 0.00 4.41
1527 3916 6.340522 GGCAAGGAATTTAAATATGTGCTGT 58.659 36.000 18.05 0.00 0.00 4.40
1528 3917 6.256321 GGCAAGGAATTTAAATATGTGCTGTG 59.744 38.462 18.05 9.68 0.00 3.66
1542 3931 2.163010 GTGCTGTGCATCTAAAGCATGT 59.837 45.455 12.14 0.00 46.50 3.21
1546 3935 4.439700 GCTGTGCATCTAAAGCATGTCATT 60.440 41.667 0.00 0.00 44.79 2.57
1603 3992 7.357951 TGACGCGATATGCATTAAATTATGA 57.642 32.000 15.93 0.00 46.97 2.15
1653 4042 3.611674 TGCTTCCGCACGACCTGA 61.612 61.111 0.00 0.00 42.25 3.86
1727 4118 1.183030 ACTCACACGGTCCGATGGAA 61.183 55.000 20.51 4.59 31.38 3.53
1784 4175 4.526970 AGAAGAAGCTTCACAGGTTTTCA 58.473 39.130 27.57 0.00 40.97 2.69
1815 4206 3.455737 AGCTCTCTATCAGCTCCCC 57.544 57.895 0.00 0.00 44.25 4.81
1864 4255 7.599630 AAAATCTAACAGTCCGCGTTAAATA 57.400 32.000 4.92 0.00 0.00 1.40
1922 4314 0.175760 GTCAAGCCCGAGCAGATACA 59.824 55.000 0.00 0.00 43.56 2.29
1943 4341 5.885230 CACCATCATGTGTGTTATCTGTT 57.115 39.130 0.00 0.00 0.00 3.16
1944 4342 5.633927 CACCATCATGTGTGTTATCTGTTG 58.366 41.667 0.00 0.00 0.00 3.33
1945 4343 5.181811 CACCATCATGTGTGTTATCTGTTGT 59.818 40.000 0.00 0.00 0.00 3.32
1946 4344 5.412594 ACCATCATGTGTGTTATCTGTTGTC 59.587 40.000 0.00 0.00 0.00 3.18
1947 4345 5.645067 CCATCATGTGTGTTATCTGTTGTCT 59.355 40.000 0.00 0.00 0.00 3.41
1948 4346 6.402875 CCATCATGTGTGTTATCTGTTGTCTG 60.403 42.308 0.00 0.00 0.00 3.51
1950 4348 6.287525 TCATGTGTGTTATCTGTTGTCTGAA 58.712 36.000 0.00 0.00 0.00 3.02
1951 4349 6.936335 TCATGTGTGTTATCTGTTGTCTGAAT 59.064 34.615 0.00 0.00 0.00 2.57
1952 4350 6.544038 TGTGTGTTATCTGTTGTCTGAATG 57.456 37.500 0.00 0.00 0.00 2.67
1953 4351 6.287525 TGTGTGTTATCTGTTGTCTGAATGA 58.712 36.000 0.00 0.00 0.00 2.57
1954 4352 6.202762 TGTGTGTTATCTGTTGTCTGAATGAC 59.797 38.462 0.00 0.00 45.54 3.06
1955 4353 5.700832 TGTGTTATCTGTTGTCTGAATGACC 59.299 40.000 0.00 0.00 44.75 4.02
1956 4354 4.929211 TGTTATCTGTTGTCTGAATGACCG 59.071 41.667 0.00 0.00 44.75 4.79
1957 4355 3.685139 ATCTGTTGTCTGAATGACCGT 57.315 42.857 0.00 0.00 44.75 4.83
1958 4356 3.026630 TCTGTTGTCTGAATGACCGTC 57.973 47.619 0.00 0.00 44.75 4.79
1963 4361 4.021456 TGTTGTCTGAATGACCGTCATAGT 60.021 41.667 14.43 0.00 44.75 2.12
1970 4368 3.827008 ATGACCGTCATAGTCAATGCT 57.173 42.857 12.50 0.00 46.67 3.79
1974 4372 1.655484 CGTCATAGTCAATGCTGCCA 58.345 50.000 0.00 0.00 35.38 4.92
2167 4603 3.677190 AATTCGTTGCACAACACGTAA 57.323 38.095 13.52 3.12 41.20 3.18
2199 4637 0.035056 CCAATCTCCCAGACCACACC 60.035 60.000 0.00 0.00 0.00 4.16
2213 4652 3.203059 ACCACACCCCCAATCCTATTTA 58.797 45.455 0.00 0.00 0.00 1.40
2227 4666 2.386249 CTATTTAGCGTCCTCTGCGTC 58.614 52.381 0.00 0.00 37.44 5.19
2228 4667 0.530744 ATTTAGCGTCCTCTGCGTCA 59.469 50.000 0.00 0.00 37.44 4.35
2229 4668 0.388134 TTTAGCGTCCTCTGCGTCAC 60.388 55.000 0.00 0.00 37.44 3.67
2230 4669 1.241990 TTAGCGTCCTCTGCGTCACT 61.242 55.000 0.00 0.00 37.44 3.41
2231 4670 1.241990 TAGCGTCCTCTGCGTCACTT 61.242 55.000 0.00 0.00 37.44 3.16
2232 4671 1.211969 GCGTCCTCTGCGTCACTTA 59.788 57.895 0.00 0.00 0.00 2.24
2233 4672 0.179134 GCGTCCTCTGCGTCACTTAT 60.179 55.000 0.00 0.00 0.00 1.73
2234 4673 1.065102 GCGTCCTCTGCGTCACTTATA 59.935 52.381 0.00 0.00 0.00 0.98
2235 4674 2.855187 GCGTCCTCTGCGTCACTTATAG 60.855 54.545 0.00 0.00 0.00 1.31
2308 4747 4.255833 TGTGGCTTGATTTGATTGGAAC 57.744 40.909 0.00 0.00 0.00 3.62
2325 4764 3.752542 TGGAACAAAATAAGGTTCGGCCT 60.753 43.478 0.00 0.00 43.95 5.19
2367 4806 7.560796 GGGGGAGATGATTAGATTAGAAAGA 57.439 40.000 0.00 0.00 0.00 2.52
2409 4848 1.555075 GTAGGATGAAGTGGGAGCACA 59.445 52.381 0.00 0.00 0.00 4.57
2453 4892 0.179018 GCAAGCCGGATCCCACTTAT 60.179 55.000 5.05 0.00 0.00 1.73
2472 4911 8.362639 CCACTTATAGGCTTAATTGCAAATGAT 58.637 33.333 1.71 0.00 34.04 2.45
2482 4921 3.632896 CAAATGATGCCCACCCCC 58.367 61.111 0.00 0.00 0.00 5.40
2501 4940 1.338674 CCCTCCTTGTGCACATCGTAA 60.339 52.381 22.39 3.88 0.00 3.18
2534 4973 4.319911 CGACCCATGTAACGTTTGTTCATT 60.320 41.667 5.91 0.00 39.54 2.57
2542 4981 9.618410 CATGTAACGTTTGTTCATTTTTCTTTC 57.382 29.630 5.91 0.00 39.54 2.62
2543 4982 8.744008 TGTAACGTTTGTTCATTTTTCTTTCA 57.256 26.923 5.91 0.00 39.54 2.69
2544 4983 8.640291 TGTAACGTTTGTTCATTTTTCTTTCAC 58.360 29.630 5.91 0.00 39.54 3.18
2545 4984 7.644986 AACGTTTGTTCATTTTTCTTTCACA 57.355 28.000 0.00 0.00 30.83 3.58
2546 4985 7.644986 ACGTTTGTTCATTTTTCTTTCACAA 57.355 28.000 0.00 0.00 0.00 3.33
2548 4987 8.007152 ACGTTTGTTCATTTTTCTTTCACAAAC 58.993 29.630 12.76 12.76 44.55 2.93
2549 4988 8.350880 GTTTGTTCATTTTTCTTTCACAAACG 57.649 30.769 8.72 0.00 41.31 3.60
2551 4990 5.062809 TGTTCATTTTTCTTTCACAAACGGC 59.937 36.000 0.00 0.00 0.00 5.68
2556 4995 2.861462 TCTTTCACAAACGGCCTTTG 57.139 45.000 19.79 19.79 44.42 2.77
2690 5941 7.994425 TTTTAGCAGACAGATGGACATTTTA 57.006 32.000 0.00 0.00 0.00 1.52
2691 5942 7.994425 TTTAGCAGACAGATGGACATTTTAA 57.006 32.000 0.00 0.00 0.00 1.52
2717 5968 9.744468 ATAAACTACCTGTGCAGTTTTTAAAAG 57.256 29.630 5.02 0.00 41.09 2.27
2921 6183 5.163652 ACACTTTTCTGGCTTACTTGAACAC 60.164 40.000 0.00 0.00 0.00 3.32
2931 6193 8.468720 TGGCTTACTTGAACACTTTTAAAAAC 57.531 30.769 1.66 0.00 0.00 2.43
2934 6196 8.917655 GCTTACTTGAACACTTTTAAAAACACA 58.082 29.630 1.66 0.00 0.00 3.72
3209 7823 1.838715 AGTGCAGAGCAGGATGAAGAT 59.161 47.619 0.00 0.00 40.08 2.40
3267 7881 2.354188 CTCACCGCGTTCACGTCA 60.354 61.111 4.92 0.00 42.22 4.35
3285 7899 1.079405 ATCGTTGTTCATCGCCGGT 60.079 52.632 1.90 0.00 0.00 5.28
3291 7905 0.454600 TGTTCATCGCCGGTACTCTC 59.545 55.000 1.90 0.00 0.00 3.20
3311 7925 4.329545 GTCCTTGGTGGCGAGCCA 62.330 66.667 13.49 13.49 45.02 4.75
3371 7985 0.889186 GGTGGCGTCATGTTCCTTGT 60.889 55.000 0.00 0.00 0.00 3.16
3375 7989 0.949105 GCGTCATGTTCCTTGTCGGT 60.949 55.000 0.00 0.00 0.00 4.69
3414 8028 0.244450 CCGTCAACATTGCCATGCTT 59.756 50.000 0.00 0.00 33.05 3.91
3438 8052 2.735237 GGCCGGATTCTACTCGGG 59.265 66.667 5.05 0.00 43.55 5.14
3467 8081 5.354234 GTCTTGGGTTCACATTACAGGTATG 59.646 44.000 0.00 0.00 0.00 2.39
3468 8082 3.616219 TGGGTTCACATTACAGGTATGC 58.384 45.455 0.00 0.00 0.00 3.14
3469 8083 2.612212 GGGTTCACATTACAGGTATGCG 59.388 50.000 0.00 0.00 0.00 4.73
3472 8132 1.140052 TCACATTACAGGTATGCGGGG 59.860 52.381 0.00 0.00 0.00 5.73
3473 8133 0.472471 ACATTACAGGTATGCGGGGG 59.528 55.000 0.00 0.00 0.00 5.40
3479 8139 0.038166 CAGGTATGCGGGGGCAATAT 59.962 55.000 0.00 0.00 0.00 1.28
3480 8140 0.777446 AGGTATGCGGGGGCAATATT 59.223 50.000 0.00 0.00 0.00 1.28
3483 8143 1.812571 GTATGCGGGGGCAATATTGAG 59.187 52.381 19.73 5.48 0.00 3.02
3492 8152 2.818432 GGGCAATATTGAGCATCTCCTG 59.182 50.000 19.73 0.00 34.92 3.86
3664 8325 6.416631 TCTGTCGCTACTCCTATCTAACTA 57.583 41.667 0.00 0.00 0.00 2.24
3670 8331 8.566260 GTCGCTACTCCTATCTAACTAATGAAA 58.434 37.037 0.00 0.00 0.00 2.69
3678 8339 5.546621 ATCTAACTAATGAAAGGGCGCTA 57.453 39.130 7.64 0.00 0.00 4.26
3713 8374 1.045407 TACCAAACAGACCTCGCAGT 58.955 50.000 0.00 0.00 0.00 4.40
4722 11277 4.165486 CGCGGGGGTCGGGTATTT 62.165 66.667 0.00 0.00 45.17 1.40
4723 11278 2.203112 GCGGGGGTCGGGTATTTC 60.203 66.667 0.00 0.00 39.69 2.17
4724 11279 2.738938 GCGGGGGTCGGGTATTTCT 61.739 63.158 0.00 0.00 39.69 2.52
4725 11280 1.402107 GCGGGGGTCGGGTATTTCTA 61.402 60.000 0.00 0.00 39.69 2.10
4726 11281 0.677842 CGGGGGTCGGGTATTTCTAG 59.322 60.000 0.00 0.00 34.75 2.43
4727 11282 1.798626 GGGGGTCGGGTATTTCTAGT 58.201 55.000 0.00 0.00 0.00 2.57
4728 11283 2.752829 CGGGGGTCGGGTATTTCTAGTA 60.753 54.545 0.00 0.00 34.75 1.82
4729 11284 3.514539 GGGGGTCGGGTATTTCTAGTAT 58.485 50.000 0.00 0.00 0.00 2.12
4730 11285 3.513119 GGGGGTCGGGTATTTCTAGTATC 59.487 52.174 0.00 0.00 0.00 2.24
4731 11286 4.414677 GGGGTCGGGTATTTCTAGTATCT 58.585 47.826 0.00 0.00 0.00 1.98
4736 11291 6.150809 GGTCGGGTATTTCTAGTATCTGGTAG 59.849 46.154 0.00 0.00 0.00 3.18
4884 11439 2.993899 GACCATCACCAACTACTTCACG 59.006 50.000 0.00 0.00 0.00 4.35
4897 11452 0.174845 CTTCACGAACCGCATCCCTA 59.825 55.000 0.00 0.00 0.00 3.53
4899 11454 1.227263 CACGAACCGCATCCCTAGG 60.227 63.158 0.06 0.06 0.00 3.02
4912 11467 4.609018 CTAGGTGGGGATGGCGCG 62.609 72.222 0.00 0.00 0.00 6.86
4965 11520 2.520968 GTGGTGGTGGGAGCCTTT 59.479 61.111 0.00 0.00 0.00 3.11
5165 11720 1.077985 AGTACCGGCACTACCTGGT 59.922 57.895 5.22 4.05 44.33 4.00
5187 11742 4.778143 GGGCTGGCTGTACCCGTG 62.778 72.222 0.00 0.00 37.83 4.94
5192 11747 0.892755 CTGGCTGTACCCGTGTTCTA 59.107 55.000 0.00 0.00 37.83 2.10
5218 11773 0.249615 CACCGGCATGATCGTCATCT 60.250 55.000 0.00 0.00 34.28 2.90
5220 11775 1.005804 CCGGCATGATCGTCATCTCG 61.006 60.000 0.00 5.51 34.28 4.04
5286 11841 2.206576 AGGCCATTCTTGGTTCTGTC 57.793 50.000 5.01 0.00 45.57 3.51
5313 11868 0.664166 GCATGACAAACTTGGTGGCG 60.664 55.000 0.00 0.00 0.00 5.69
5316 11871 1.278637 GACAAACTTGGTGGCGACG 59.721 57.895 0.00 0.00 0.00 5.12
5326 11881 2.915659 TGGCGACGGTTCTGTCCT 60.916 61.111 0.00 0.00 35.40 3.85
5373 11928 2.437281 CAGGTTCCTGCTCATCATAGGT 59.563 50.000 5.89 0.00 33.30 3.08
5376 11931 2.435805 GTTCCTGCTCATCATAGGTGGA 59.564 50.000 0.00 0.00 33.30 4.02
5386 11941 1.768275 TCATAGGTGGAATCGGCATGT 59.232 47.619 0.00 0.00 0.00 3.21
5389 11944 1.139520 GGTGGAATCGGCATGTTGC 59.860 57.895 0.00 0.00 44.08 4.17
5401 11956 1.284657 CATGTTGCTCTGCGAGGTAG 58.715 55.000 7.50 0.00 0.00 3.18
5402 11957 0.176680 ATGTTGCTCTGCGAGGTAGG 59.823 55.000 7.50 0.00 0.00 3.18
5403 11958 0.898326 TGTTGCTCTGCGAGGTAGGA 60.898 55.000 7.50 0.00 0.00 2.94
5404 11959 0.179124 GTTGCTCTGCGAGGTAGGAG 60.179 60.000 7.50 0.00 0.00 3.69
5405 11960 0.612174 TTGCTCTGCGAGGTAGGAGT 60.612 55.000 7.50 0.00 0.00 3.85
5406 11961 0.255033 TGCTCTGCGAGGTAGGAGTA 59.745 55.000 7.50 0.00 0.00 2.59
5408 11963 1.747898 GCTCTGCGAGGTAGGAGTACT 60.748 57.143 0.00 0.00 0.00 2.73
5409 11964 2.485124 GCTCTGCGAGGTAGGAGTACTA 60.485 54.545 0.00 0.00 0.00 1.82
5425 11980 5.127356 GGAGTACTACCTATCATGCCATACC 59.873 48.000 0.00 0.00 0.00 2.73
5428 11983 3.510360 ACTACCTATCATGCCATACCGTC 59.490 47.826 0.00 0.00 0.00 4.79
5430 11985 2.037251 ACCTATCATGCCATACCGTCAC 59.963 50.000 0.00 0.00 0.00 3.67
5432 11987 2.245159 ATCATGCCATACCGTCACTG 57.755 50.000 0.00 0.00 0.00 3.66
5433 11988 0.461870 TCATGCCATACCGTCACTGC 60.462 55.000 0.00 0.00 0.00 4.40
5434 11989 1.521457 ATGCCATACCGTCACTGCG 60.521 57.895 0.00 0.00 0.00 5.18
5437 11992 0.249322 GCCATACCGTCACTGCGTAT 60.249 55.000 0.00 0.00 0.00 3.06
5440 11995 0.744874 ATACCGTCACTGCGTATGCT 59.255 50.000 8.69 0.00 43.34 3.79
5441 11996 1.381522 TACCGTCACTGCGTATGCTA 58.618 50.000 8.69 0.00 43.34 3.49
5443 11998 0.100682 CCGTCACTGCGTATGCTACT 59.899 55.000 8.69 0.00 43.34 2.57
5444 11999 1.191944 CGTCACTGCGTATGCTACTG 58.808 55.000 8.69 0.94 43.34 2.74
5446 12001 2.541794 CGTCACTGCGTATGCTACTGAT 60.542 50.000 8.69 0.00 43.34 2.90
5448 12003 2.687935 TCACTGCGTATGCTACTGATGA 59.312 45.455 8.69 0.58 43.34 2.92
5449 12004 3.319122 TCACTGCGTATGCTACTGATGAT 59.681 43.478 8.69 0.00 43.34 2.45
5452 12007 6.374333 TCACTGCGTATGCTACTGATGATATA 59.626 38.462 8.69 0.00 43.34 0.86
5460 12015 9.923786 GTATGCTACTGATGATATACTAGTTCG 57.076 37.037 0.00 0.00 0.00 3.95
5468 12033 8.557592 TGATGATATACTAGTTCGTATCCGTT 57.442 34.615 0.00 0.00 32.63 4.44
5469 12034 9.006839 TGATGATATACTAGTTCGTATCCGTTT 57.993 33.333 0.00 0.00 32.63 3.60
5470 12035 9.275231 GATGATATACTAGTTCGTATCCGTTTG 57.725 37.037 0.00 0.00 32.63 2.93
5471 12036 8.382030 TGATATACTAGTTCGTATCCGTTTGA 57.618 34.615 0.00 0.00 32.63 2.69
5478 12043 5.175859 AGTTCGTATCCGTTTGATTGATGT 58.824 37.500 0.00 0.00 34.76 3.06
5481 12046 5.416083 TCGTATCCGTTTGATTGATGTCTT 58.584 37.500 0.00 0.00 34.76 3.01
5490 12055 7.854422 CCGTTTGATTGATGTCTTGATCTAATG 59.146 37.037 0.00 0.00 0.00 1.90
5502 12067 8.912988 TGTCTTGATCTAATGAACCTTTTGTTT 58.087 29.630 0.00 0.00 37.29 2.83
5503 12068 9.750125 GTCTTGATCTAATGAACCTTTTGTTTT 57.250 29.630 0.00 0.00 37.29 2.43
5504 12069 9.748708 TCTTGATCTAATGAACCTTTTGTTTTG 57.251 29.630 0.00 0.00 37.29 2.44
5505 12070 9.533253 CTTGATCTAATGAACCTTTTGTTTTGT 57.467 29.630 0.00 0.00 37.29 2.83
5506 12071 9.883142 TTGATCTAATGAACCTTTTGTTTTGTT 57.117 25.926 0.00 0.00 37.29 2.83
5507 12072 9.311916 TGATCTAATGAACCTTTTGTTTTGTTG 57.688 29.630 0.00 0.00 37.29 3.33
5508 12073 8.661352 ATCTAATGAACCTTTTGTTTTGTTGG 57.339 30.769 0.00 0.00 37.29 3.77
5510 12075 6.493449 AATGAACCTTTTGTTTTGTTGGTG 57.507 33.333 0.00 0.00 37.29 4.17
5511 12076 5.215252 TGAACCTTTTGTTTTGTTGGTGA 57.785 34.783 0.00 0.00 37.29 4.02
5512 12077 5.611374 TGAACCTTTTGTTTTGTTGGTGAA 58.389 33.333 0.00 0.00 37.29 3.18
5513 12078 5.467063 TGAACCTTTTGTTTTGTTGGTGAAC 59.533 36.000 0.00 0.00 37.29 3.18
5514 12079 5.222079 ACCTTTTGTTTTGTTGGTGAACT 57.778 34.783 0.00 0.00 32.79 3.01
5516 12081 6.760291 ACCTTTTGTTTTGTTGGTGAACTTA 58.240 32.000 0.00 0.00 32.79 2.24
5517 12082 6.647481 ACCTTTTGTTTTGTTGGTGAACTTAC 59.353 34.615 0.00 0.00 32.79 2.34
5518 12083 6.871492 CCTTTTGTTTTGTTGGTGAACTTACT 59.129 34.615 0.00 0.00 32.79 2.24
5519 12084 8.030106 CCTTTTGTTTTGTTGGTGAACTTACTA 58.970 33.333 0.00 0.00 32.79 1.82
5520 12085 9.413048 CTTTTGTTTTGTTGGTGAACTTACTAA 57.587 29.630 0.00 0.00 32.79 2.24
5521 12086 9.930693 TTTTGTTTTGTTGGTGAACTTACTAAT 57.069 25.926 0.00 0.00 32.79 1.73
5522 12087 9.575783 TTTGTTTTGTTGGTGAACTTACTAATC 57.424 29.630 0.00 0.00 32.79 1.75
5523 12088 8.282455 TGTTTTGTTGGTGAACTTACTAATCA 57.718 30.769 0.00 0.00 32.79 2.57
5524 12089 8.908903 TGTTTTGTTGGTGAACTTACTAATCAT 58.091 29.630 0.00 0.00 32.79 2.45
5525 12090 9.394477 GTTTTGTTGGTGAACTTACTAATCATC 57.606 33.333 0.00 0.00 32.79 2.92
5526 12091 8.684386 TTTGTTGGTGAACTTACTAATCATCA 57.316 30.769 0.00 0.00 32.62 3.07
5634 12199 1.153208 CCTCATCTGCCTCTGCACC 60.153 63.158 0.00 0.00 44.23 5.01
5647 12212 1.294659 CTGCACCTTCAGCTTCGGTC 61.295 60.000 0.00 0.00 0.00 4.79
5704 12269 1.203075 AGATCTACCCGGTGGAGATCC 60.203 57.143 28.13 17.18 41.44 3.36
5738 12303 0.174389 GCCTTGAGCATCTCTGTCGA 59.826 55.000 0.00 0.00 42.97 4.20
5802 12367 1.447838 CTGCGCCATGAAGTACGGT 60.448 57.895 4.18 0.00 0.00 4.83
5822 12387 0.810016 GTCTTCCTCTTCTACGCCGT 59.190 55.000 0.00 0.00 0.00 5.68
5855 12420 1.899437 ATGACCATCTTCGTGGCGGT 61.899 55.000 0.00 0.00 43.27 5.68
5862 12427 0.458669 TCTTCGTGGCGGTATTCCTC 59.541 55.000 0.00 0.00 0.00 3.71
5940 12505 1.420430 ACTGGAGGAGGTTCGTCAAA 58.580 50.000 1.82 0.00 33.27 2.69
5961 12526 1.479323 CAGGATGCCAACCATGAAAGG 59.521 52.381 0.00 0.00 33.29 3.11
6010 12579 6.803154 AGTAAGTGCAGATAAAACTGGTTC 57.197 37.500 0.00 0.00 38.22 3.62
6114 12691 1.633945 AGGGTGTTGGGTTAGGCTTAG 59.366 52.381 0.00 0.00 0.00 2.18
6185 14230 5.384336 TCAAATCTGAGGTCAAATTGTGGA 58.616 37.500 0.00 0.00 0.00 4.02
6252 14361 5.009610 AGTTATTTGTTGTAGTGTGGCCAAG 59.990 40.000 7.24 0.00 0.00 3.61
6366 14651 1.728971 GCATCTGACTGTTGAACTCCG 59.271 52.381 0.00 0.00 0.00 4.63
6371 14749 0.861837 GACTGTTGAACTCCGCACAG 59.138 55.000 0.00 0.00 0.00 3.66
6441 14819 4.224433 GCATGATAATTGGCGATGTTCAG 58.776 43.478 0.00 1.64 0.00 3.02
6449 14827 4.880886 TTGGCGATGTTCAGTTATCATG 57.119 40.909 0.00 0.00 0.00 3.07
6472 14850 3.297134 TGATCACTTTTCCATAGGGGC 57.703 47.619 0.00 0.00 36.21 5.80
6473 14851 2.580322 TGATCACTTTTCCATAGGGGCA 59.420 45.455 0.00 0.00 36.21 5.36
6478 14856 2.017049 CTTTTCCATAGGGGCAAGACG 58.983 52.381 0.00 0.00 36.21 4.18
6493 14871 3.384348 ACGCCAGGATACGGTGTT 58.616 55.556 0.00 0.00 46.69 3.32
6495 14873 0.672401 ACGCCAGGATACGGTGTTTG 60.672 55.000 0.00 0.00 46.69 2.93
6496 14874 1.366111 CGCCAGGATACGGTGTTTGG 61.366 60.000 0.00 0.00 46.39 3.28
6514 14892 4.856801 ATAGCCCGCAAGCACCGG 62.857 66.667 0.00 0.00 45.17 5.28
6545 14923 1.830477 GCCCACAAATTAGCCCATTCA 59.170 47.619 0.00 0.00 0.00 2.57
6548 14926 3.510719 CCACAAATTAGCCCATTCAACG 58.489 45.455 0.00 0.00 0.00 4.10
6557 14935 1.882352 GCCCATTCAACGGTCTTCACT 60.882 52.381 0.00 0.00 0.00 3.41
6559 14937 3.670625 CCCATTCAACGGTCTTCACTTA 58.329 45.455 0.00 0.00 0.00 2.24
6587 14965 2.140717 GACCGTCGGAACAAGATGTTT 58.859 47.619 20.51 0.00 41.28 2.83
6591 14969 3.541711 CGTCGGAACAAGATGTTTCAAC 58.458 45.455 2.70 0.00 41.28 3.18
6593 14971 3.246699 GTCGGAACAAGATGTTTCAACGA 59.753 43.478 2.70 5.97 41.28 3.85
6603 14981 5.496556 AGATGTTTCAACGACCATTATGGA 58.503 37.500 19.23 0.00 40.96 3.41
6604 14982 6.122277 AGATGTTTCAACGACCATTATGGAT 58.878 36.000 19.23 1.97 40.96 3.41
6605 14983 5.559427 TGTTTCAACGACCATTATGGATG 57.441 39.130 19.23 11.63 40.96 3.51
6659 15037 6.260714 AGAAGATGGCAAACAAATTTGGAAAC 59.739 34.615 21.74 8.71 44.64 2.78
6762 15158 3.005897 GCTTGATCCGCTAGATGGACTTA 59.994 47.826 6.32 0.00 38.60 2.24
6769 15165 6.726490 TCCGCTAGATGGACTTATAAAACT 57.274 37.500 0.00 0.00 0.00 2.66
6823 15219 2.742589 GCTCGCCCCATAAGTATTTAGC 59.257 50.000 0.00 0.00 0.00 3.09
6849 15245 5.068987 TGAAGAAGCTGCAACCATAAACTTT 59.931 36.000 1.02 0.00 0.00 2.66
6851 15247 4.584325 AGAAGCTGCAACCATAAACTTTCA 59.416 37.500 1.02 0.00 0.00 2.69
6856 15252 4.155709 TGCAACCATAAACTTTCATCCCA 58.844 39.130 0.00 0.00 0.00 4.37
6857 15253 4.776837 TGCAACCATAAACTTTCATCCCAT 59.223 37.500 0.00 0.00 0.00 4.00
6867 15263 6.884280 AACTTTCATCCCATCGAATAATCC 57.116 37.500 0.00 0.00 0.00 3.01
6878 15274 2.567169 TCGAATAATCCGCCAGATCCAT 59.433 45.455 0.00 0.00 32.47 3.41
6891 15287 2.012902 GATCCATGCAGCACAAGGGC 62.013 60.000 0.00 0.00 37.74 5.19
6942 15658 1.497309 CCCTACCAGGTCCTTTGGCA 61.497 60.000 0.00 0.00 39.39 4.92
6943 15659 0.625849 CCTACCAGGTCCTTTGGCAT 59.374 55.000 0.00 0.00 39.39 4.40
6948 15664 1.281867 CCAGGTCCTTTGGCATACAGA 59.718 52.381 0.00 0.00 0.00 3.41
6949 15665 2.092212 CCAGGTCCTTTGGCATACAGAT 60.092 50.000 0.00 0.00 0.00 2.90
6973 16098 6.718593 ATCAGCCCCTTTATCATATGGTAA 57.281 37.500 4.23 4.23 0.00 2.85
6974 16099 5.876357 TCAGCCCCTTTATCATATGGTAAC 58.124 41.667 7.97 0.00 0.00 2.50
7007 16133 0.868406 CTGCCTGTCGGAAGAAACAC 59.132 55.000 0.00 0.00 45.01 3.32
7015 16141 3.177487 GTCGGAAGAAACACGATAGGTC 58.823 50.000 0.00 0.00 45.01 3.85
7079 16205 2.180276 GGCTAGAGAGGTTGGAGTCAA 58.820 52.381 0.00 0.00 0.00 3.18
7083 16209 5.452636 GGCTAGAGAGGTTGGAGTCAATAAG 60.453 48.000 0.00 0.00 35.10 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.806247 GTGTCTTCAGATTGGATACTTCCG 59.194 45.833 0.00 0.00 45.89 4.30
1 2 5.734720 TGTGTCTTCAGATTGGATACTTCC 58.265 41.667 0.00 0.00 42.94 3.46
2 3 7.044181 TCATGTGTCTTCAGATTGGATACTTC 58.956 38.462 0.00 0.00 37.61 3.01
4 5 6.550938 TCATGTGTCTTCAGATTGGATACT 57.449 37.500 0.00 0.00 37.61 2.12
5 6 7.044181 TCTTCATGTGTCTTCAGATTGGATAC 58.956 38.462 0.00 0.00 0.00 2.24
6 7 7.186570 TCTTCATGTGTCTTCAGATTGGATA 57.813 36.000 0.00 0.00 0.00 2.59
7 8 6.058553 TCTTCATGTGTCTTCAGATTGGAT 57.941 37.500 0.00 0.00 0.00 3.41
12 13 5.636965 CGTCTTTCTTCATGTGTCTTCAGAT 59.363 40.000 0.00 0.00 0.00 2.90
13 14 4.984785 CGTCTTTCTTCATGTGTCTTCAGA 59.015 41.667 0.00 0.00 0.00 3.27
23 2361 6.015504 CGGTATTTGTTCGTCTTTCTTCATG 58.984 40.000 0.00 0.00 0.00 3.07
24 2362 5.929992 TCGGTATTTGTTCGTCTTTCTTCAT 59.070 36.000 0.00 0.00 0.00 2.57
36 2374 3.308866 CCACTCGGATTCGGTATTTGTTC 59.691 47.826 0.00 0.00 36.95 3.18
39 2377 3.173668 TCCACTCGGATTCGGTATTTG 57.826 47.619 0.00 0.00 35.91 2.32
56 2394 1.496857 TGGTTGTCTTTGGTGGATCCA 59.503 47.619 11.44 11.44 45.60 3.41
74 2412 3.496131 CGCGGAATTGGTCGGTGG 61.496 66.667 0.00 0.00 34.36 4.61
114 2452 2.047274 ATTGTCGGAGGGCGTGTG 60.047 61.111 0.00 0.00 0.00 3.82
120 2458 0.824109 TGTCTAGCATTGTCGGAGGG 59.176 55.000 0.00 0.00 0.00 4.30
133 2471 0.100682 CGTCCCGATGGTGTGTCTAG 59.899 60.000 0.00 0.00 0.00 2.43
139 2477 3.075005 CTCCCGTCCCGATGGTGT 61.075 66.667 2.35 0.00 35.70 4.16
155 2493 4.035102 GGTTCTCCCCGCCAAGCT 62.035 66.667 0.00 0.00 0.00 3.74
160 2498 1.064979 TGAAATAAGGTTCTCCCCGCC 60.065 52.381 0.00 0.00 0.00 6.13
170 2508 6.183360 GCGGCTTCTTAAAGATGAAATAAGGT 60.183 38.462 0.00 0.00 34.14 3.50
178 2516 1.066430 ACGGCGGCTTCTTAAAGATGA 60.066 47.619 13.24 0.00 34.14 2.92
185 2523 2.180017 GACGACGGCGGCTTCTTA 59.820 61.111 18.49 0.00 43.91 2.10
199 2537 1.612156 CTGCTCAAGAAGACGAGACG 58.388 55.000 0.00 0.00 0.00 4.18
213 2551 6.569179 TTTTGTTAGGTTTATGTCCTGCTC 57.431 37.500 0.00 0.00 36.60 4.26
234 2573 6.402011 CCGTTTTCAAGTGCTTGTTCAAATTT 60.402 34.615 11.17 0.00 41.16 1.82
237 2576 3.923461 CCGTTTTCAAGTGCTTGTTCAAA 59.077 39.130 11.17 7.05 41.16 2.69
238 2577 3.191581 TCCGTTTTCAAGTGCTTGTTCAA 59.808 39.130 11.17 2.05 41.16 2.69
243 2582 1.600413 GGCTCCGTTTTCAAGTGCTTG 60.600 52.381 5.63 5.63 41.71 4.01
250 2589 4.813346 GGAGGGCTCCGTTTTCAA 57.187 55.556 0.00 0.00 40.36 2.69
277 2616 2.125269 CGTGGTGGATTCCGGTCC 60.125 66.667 0.00 1.94 38.81 4.46
284 2623 0.107214 CTATGGGTGCGTGGTGGATT 60.107 55.000 0.00 0.00 0.00 3.01
287 2626 2.824041 GCTATGGGTGCGTGGTGG 60.824 66.667 0.00 0.00 0.00 4.61
292 2631 0.753262 CCTTAGAGCTATGGGTGCGT 59.247 55.000 0.00 0.00 35.28 5.24
294 2633 0.250510 GGCCTTAGAGCTATGGGTGC 60.251 60.000 0.00 0.00 32.67 5.01
305 2644 2.103432 TCACGTCTTTTGTGGCCTTAGA 59.897 45.455 3.32 0.00 37.91 2.10
322 2661 3.913573 CGCCGCCGATCTTTCACG 61.914 66.667 0.00 0.00 36.29 4.35
345 2684 4.097361 GGGTTCCTGCCTCCCGTC 62.097 72.222 0.00 0.00 0.00 4.79
349 2688 1.690985 AGCTAGGGTTCCTGCCTCC 60.691 63.158 0.00 0.00 34.61 4.30
384 2723 1.580059 TATTGCCCTCCCTTCGTCTT 58.420 50.000 0.00 0.00 0.00 3.01
389 2728 2.234143 GCTCATTATTGCCCTCCCTTC 58.766 52.381 0.00 0.00 0.00 3.46
399 2738 4.109766 TCGAGTACGTTGGCTCATTATTG 58.890 43.478 0.00 0.00 40.69 1.90
424 2763 8.076781 GCAGAGCCTTAGGTTTATAAAATAAGC 58.923 37.037 17.98 14.85 0.00 3.09
425 2764 8.568794 GGCAGAGCCTTAGGTTTATAAAATAAG 58.431 37.037 17.12 17.12 46.69 1.73
426 2765 8.459911 GGCAGAGCCTTAGGTTTATAAAATAA 57.540 34.615 0.00 2.32 46.69 1.40
428 2767 6.961360 GGCAGAGCCTTAGGTTTATAAAAT 57.039 37.500 0.00 0.00 46.69 1.82
448 2787 6.948886 TGACCTTAGGTTTAAATAATGTGGCA 59.051 34.615 4.99 0.00 35.25 4.92
480 2820 3.127895 GCCGCAACTACCATTTTATGTCA 59.872 43.478 0.00 0.00 0.00 3.58
499 2839 1.205657 ATGAAGCAACGTATACGCCG 58.794 50.000 24.64 16.46 44.43 6.46
514 2854 2.892215 TGCCACAATCTGAAGCAATGAA 59.108 40.909 0.00 0.00 0.00 2.57
517 2857 2.829720 ACATGCCACAATCTGAAGCAAT 59.170 40.909 0.00 0.00 34.04 3.56
528 2868 4.280425 TGAGAATAAAAGCACATGCCACAA 59.720 37.500 0.00 0.00 43.38 3.33
607 2947 6.127281 TGTGCGGAATTATTTAGAGTCCACTA 60.127 38.462 0.00 0.00 0.00 2.74
616 2956 7.543868 TCCACATTTTTGTGCGGAATTATTTAG 59.456 33.333 0.59 0.00 38.40 1.85
725 3065 6.016443 AGAGCAAAATGACAGAAAGAGAAAGG 60.016 38.462 0.00 0.00 0.00 3.11
890 3230 2.946785 ACATTAGGACGGAGGGAGTAG 58.053 52.381 0.00 0.00 0.00 2.57
891 3231 3.028850 CAACATTAGGACGGAGGGAGTA 58.971 50.000 0.00 0.00 0.00 2.59
892 3232 1.831736 CAACATTAGGACGGAGGGAGT 59.168 52.381 0.00 0.00 0.00 3.85
893 3233 2.108168 TCAACATTAGGACGGAGGGAG 58.892 52.381 0.00 0.00 0.00 4.30
894 3234 2.241281 TCAACATTAGGACGGAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
895 3235 3.343941 TTTCAACATTAGGACGGAGGG 57.656 47.619 0.00 0.00 0.00 4.30
896 3236 4.700213 ACATTTTCAACATTAGGACGGAGG 59.300 41.667 0.00 0.00 0.00 4.30
897 3237 5.880054 ACATTTTCAACATTAGGACGGAG 57.120 39.130 0.00 0.00 0.00 4.63
898 3238 6.642707 AAACATTTTCAACATTAGGACGGA 57.357 33.333 0.00 0.00 0.00 4.69
899 3239 7.707774 AAAAACATTTTCAACATTAGGACGG 57.292 32.000 0.00 0.00 0.00 4.79
914 3254 8.856103 CCTCGGTCCCATAATATAAAAACATTT 58.144 33.333 0.00 0.00 0.00 2.32
915 3255 7.450323 CCCTCGGTCCCATAATATAAAAACATT 59.550 37.037 0.00 0.00 0.00 2.71
916 3256 6.946009 CCCTCGGTCCCATAATATAAAAACAT 59.054 38.462 0.00 0.00 0.00 2.71
917 3257 6.101442 TCCCTCGGTCCCATAATATAAAAACA 59.899 38.462 0.00 0.00 0.00 2.83
918 3258 6.536447 TCCCTCGGTCCCATAATATAAAAAC 58.464 40.000 0.00 0.00 0.00 2.43
919 3259 6.330778 ACTCCCTCGGTCCCATAATATAAAAA 59.669 38.462 0.00 0.00 0.00 1.94
920 3260 5.847817 ACTCCCTCGGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
921 3261 5.408824 ACTCCCTCGGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
922 3262 5.019657 ACTCCCTCGGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
923 3263 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
924 3264 3.562108 ACTCCCTCGGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
925 3265 3.659195 TCTACTCCCTCGGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
926 3266 2.449730 TCTACTCCCTCGGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
927 3267 1.854939 TCTACTCCCTCGGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
928 3268 1.526315 TCTACTCCCTCGGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
929 3269 0.635009 TTCTACTCCCTCGGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
930 3270 0.635009 ATTCTACTCCCTCGGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
931 3271 2.237643 GTATTCTACTCCCTCGGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
932 3272 2.941480 TGTATTCTACTCCCTCGGTCC 58.059 52.381 0.00 0.00 0.00 4.46
933 3273 4.441217 GGTTTGTATTCTACTCCCTCGGTC 60.441 50.000 0.00 0.00 0.00 4.79
934 3274 3.450096 GGTTTGTATTCTACTCCCTCGGT 59.550 47.826 0.00 0.00 0.00 4.69
935 3275 3.705072 AGGTTTGTATTCTACTCCCTCGG 59.295 47.826 0.00 0.00 0.00 4.63
936 3276 4.202131 GGAGGTTTGTATTCTACTCCCTCG 60.202 50.000 0.00 0.00 38.80 4.63
937 3277 4.202131 CGGAGGTTTGTATTCTACTCCCTC 60.202 50.000 0.00 0.00 41.02 4.30
938 3278 3.705072 CGGAGGTTTGTATTCTACTCCCT 59.295 47.826 0.00 0.00 41.02 4.20
939 3279 3.740452 GCGGAGGTTTGTATTCTACTCCC 60.740 52.174 0.00 0.00 41.02 4.30
940 3280 3.455327 GCGGAGGTTTGTATTCTACTCC 58.545 50.000 0.00 0.00 40.76 3.85
941 3281 3.132467 AGGCGGAGGTTTGTATTCTACTC 59.868 47.826 0.00 0.00 0.00 2.59
942 3282 3.105283 AGGCGGAGGTTTGTATTCTACT 58.895 45.455 0.00 0.00 0.00 2.57
943 3283 3.195661 CAGGCGGAGGTTTGTATTCTAC 58.804 50.000 0.00 0.00 0.00 2.59
1147 3487 1.372623 GGTCACCACGACGGAGAAC 60.373 63.158 0.00 0.00 46.42 3.01
1345 3732 3.676646 ACTAATTAACAACGGAGACACGC 59.323 43.478 0.00 0.00 37.37 5.34
1347 3734 5.467735 ACCAACTAATTAACAACGGAGACAC 59.532 40.000 0.00 0.00 0.00 3.67
1355 3742 7.876582 ACTCTACTGGACCAACTAATTAACAAC 59.123 37.037 0.00 0.00 0.00 3.32
1362 3749 9.449719 CATTAAAACTCTACTGGACCAACTAAT 57.550 33.333 0.00 0.00 0.00 1.73
1365 3752 7.074653 TCATTAAAACTCTACTGGACCAACT 57.925 36.000 0.00 0.00 0.00 3.16
1369 3756 5.063564 CGCTTCATTAAAACTCTACTGGACC 59.936 44.000 0.00 0.00 0.00 4.46
1370 3757 5.867716 TCGCTTCATTAAAACTCTACTGGAC 59.132 40.000 0.00 0.00 0.00 4.02
1371 3758 6.032956 TCGCTTCATTAAAACTCTACTGGA 57.967 37.500 0.00 0.00 0.00 3.86
1372 3759 6.721571 TTCGCTTCATTAAAACTCTACTGG 57.278 37.500 0.00 0.00 0.00 4.00
1408 3795 8.370493 TGAGAAAAGATTGAACTTGACTACAG 57.630 34.615 0.00 0.00 0.00 2.74
1439 3826 9.883142 CTAGATAGATTCAACTTGACTCCTTTT 57.117 33.333 5.69 0.00 27.51 2.27
1440 3827 9.041354 ACTAGATAGATTCAACTTGACTCCTTT 57.959 33.333 0.00 0.00 27.51 3.11
1441 3828 8.602472 ACTAGATAGATTCAACTTGACTCCTT 57.398 34.615 0.00 0.00 27.51 3.36
1442 3829 9.349713 CTACTAGATAGATTCAACTTGACTCCT 57.650 37.037 0.00 0.51 31.83 3.69
1443 3830 9.127277 ACTACTAGATAGATTCAACTTGACTCC 57.873 37.037 0.00 0.00 34.65 3.85
1489 3878 0.035056 CTTGCCGTCCCTTGGATCTT 60.035 55.000 0.00 0.00 32.73 2.40
1499 3888 5.977129 CACATATTTAAATTCCTTGCCGTCC 59.023 40.000 5.91 0.00 0.00 4.79
1526 3915 5.039333 GGAAATGACATGCTTTAGATGCAC 58.961 41.667 0.00 0.00 43.59 4.57
1527 3916 4.705991 TGGAAATGACATGCTTTAGATGCA 59.294 37.500 0.00 0.00 44.95 3.96
1528 3917 5.039333 GTGGAAATGACATGCTTTAGATGC 58.961 41.667 0.00 0.00 0.00 3.91
1542 3931 2.746904 CACATGCTTACGGTGGAAATGA 59.253 45.455 0.00 0.00 0.00 2.57
1546 3935 2.627945 GATCACATGCTTACGGTGGAA 58.372 47.619 0.00 0.00 33.45 3.53
1727 4118 1.275291 TCATCCGCTCGTTCCTTCTTT 59.725 47.619 0.00 0.00 0.00 2.52
1784 4175 6.705302 TGATAGAGAGCTCTGTTCATTTTGT 58.295 36.000 23.91 0.00 40.71 2.83
1815 4206 2.028420 TGGATGTTCCAGATTCGCAG 57.972 50.000 0.00 0.00 42.67 5.18
1842 4233 7.781548 AATATTTAACGCGGACTGTTAGATT 57.218 32.000 12.47 0.00 33.67 2.40
1850 4241 6.490566 AACAAGAAATATTTAACGCGGACT 57.509 33.333 12.47 0.00 0.00 3.85
1864 4255 6.357579 TCCAATGGTGCATAAACAAGAAAT 57.642 33.333 0.00 0.00 0.00 2.17
1922 4314 5.316167 ACAACAGATAACACACATGATGGT 58.684 37.500 0.00 0.00 0.00 3.55
1942 4340 8.530341 CATTGACTATGACGGTCATTCAGACAA 61.530 40.741 26.94 26.30 41.83 3.18
1943 4341 7.121084 CATTGACTATGACGGTCATTCAGACA 61.121 42.308 26.94 20.91 41.83 3.41
1944 4342 4.371855 TGACTATGACGGTCATTCAGAC 57.628 45.455 26.94 18.91 46.83 3.51
1945 4343 5.351458 CATTGACTATGACGGTCATTCAGA 58.649 41.667 26.94 15.71 42.26 3.27
1946 4344 4.025396 GCATTGACTATGACGGTCATTCAG 60.025 45.833 26.94 20.81 42.26 3.02
1947 4345 3.871006 GCATTGACTATGACGGTCATTCA 59.129 43.478 26.94 21.61 42.26 2.57
1948 4346 4.025396 CAGCATTGACTATGACGGTCATTC 60.025 45.833 26.94 19.49 42.26 2.67
1950 4348 3.461061 CAGCATTGACTATGACGGTCAT 58.539 45.455 25.36 25.36 42.26 3.06
1951 4349 2.892374 CAGCATTGACTATGACGGTCA 58.108 47.619 14.01 14.01 41.23 4.02
1952 4350 1.594862 GCAGCATTGACTATGACGGTC 59.405 52.381 0.00 0.00 36.26 4.79
1953 4351 1.656652 GCAGCATTGACTATGACGGT 58.343 50.000 0.73 0.00 36.26 4.83
1954 4352 0.940126 GGCAGCATTGACTATGACGG 59.060 55.000 0.73 0.00 36.26 4.79
1955 4353 1.328680 GTGGCAGCATTGACTATGACG 59.671 52.381 0.73 0.00 36.26 4.35
1956 4354 2.358957 TGTGGCAGCATTGACTATGAC 58.641 47.619 0.73 0.00 36.26 3.06
1957 4355 2.785540 TGTGGCAGCATTGACTATGA 57.214 45.000 0.73 0.00 36.26 2.15
1958 4356 4.109766 CAATTGTGGCAGCATTGACTATG 58.890 43.478 11.51 0.00 37.31 2.23
1963 4361 2.629137 AGAACAATTGTGGCAGCATTGA 59.371 40.909 20.23 0.00 0.00 2.57
1970 4368 4.869297 CAGTTTGAAAGAACAATTGTGGCA 59.131 37.500 12.82 3.63 31.94 4.92
2199 4637 2.372172 AGGACGCTAAATAGGATTGGGG 59.628 50.000 0.00 0.00 0.00 4.96
2213 4652 1.241990 TAAGTGACGCAGAGGACGCT 61.242 55.000 0.00 0.00 0.00 5.07
2227 4666 3.491104 GGCAAGTCTCGTCCCTATAAGTG 60.491 52.174 0.00 0.00 0.00 3.16
2228 4667 2.694109 GGCAAGTCTCGTCCCTATAAGT 59.306 50.000 0.00 0.00 0.00 2.24
2229 4668 2.959707 AGGCAAGTCTCGTCCCTATAAG 59.040 50.000 0.00 0.00 0.00 1.73
2230 4669 2.693591 CAGGCAAGTCTCGTCCCTATAA 59.306 50.000 0.00 0.00 0.00 0.98
2231 4670 2.307768 CAGGCAAGTCTCGTCCCTATA 58.692 52.381 0.00 0.00 0.00 1.31
2232 4671 1.115467 CAGGCAAGTCTCGTCCCTAT 58.885 55.000 0.00 0.00 0.00 2.57
2233 4672 1.605058 GCAGGCAAGTCTCGTCCCTA 61.605 60.000 0.00 0.00 0.00 3.53
2234 4673 2.948720 GCAGGCAAGTCTCGTCCCT 61.949 63.158 0.00 0.00 0.00 4.20
2235 4674 2.435059 GCAGGCAAGTCTCGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
2284 4723 6.154877 TGTTCCAATCAAATCAAGCCACATAT 59.845 34.615 0.00 0.00 0.00 1.78
2287 4726 3.640498 TGTTCCAATCAAATCAAGCCACA 59.360 39.130 0.00 0.00 0.00 4.17
2319 4758 1.135068 TTTTAAGGGGGTGAGGCCGA 61.135 55.000 0.00 0.00 38.44 5.54
2384 4823 1.063492 TCCCACTTCATCCTACGGCTA 60.063 52.381 0.00 0.00 0.00 3.93
2386 4825 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
2409 4848 1.773391 CCTCCCCATGCTCCCATCT 60.773 63.158 0.00 0.00 0.00 2.90
2482 4921 2.002586 CTTACGATGTGCACAAGGAGG 58.997 52.381 25.72 14.24 0.00 4.30
2483 4922 2.002586 CCTTACGATGTGCACAAGGAG 58.997 52.381 25.72 19.80 38.42 3.69
2534 4973 3.878160 AAGGCCGTTTGTGAAAGAAAA 57.122 38.095 0.00 0.00 27.72 2.29
2545 4984 1.406180 GTTGGTGTACAAAGGCCGTTT 59.594 47.619 0.00 0.00 41.58 3.60
2546 4985 1.026584 GTTGGTGTACAAAGGCCGTT 58.973 50.000 0.00 0.00 41.58 4.44
2548 4987 0.820074 TGGTTGGTGTACAAAGGCCG 60.820 55.000 0.00 0.00 41.58 6.13
2549 4988 0.958822 CTGGTTGGTGTACAAAGGCC 59.041 55.000 0.00 0.00 41.58 5.19
2551 4990 4.429108 CAAAACTGGTTGGTGTACAAAGG 58.571 43.478 0.00 0.00 41.58 3.11
2700 5951 7.483691 AGTTTACGTCTTTTAAAAACTGCACAG 59.516 33.333 9.03 0.00 38.57 3.66
2702 5953 7.730067 AGTTTACGTCTTTTAAAAACTGCAC 57.270 32.000 9.03 0.00 38.57 4.57
2893 6155 5.065988 TCAAGTAAGCCAGAAAAGTGTTCAC 59.934 40.000 0.00 0.00 0.00 3.18
3116 7730 8.867112 TGAGTCGACCAAAAGTACAATATATC 57.133 34.615 13.01 0.00 0.00 1.63
3122 7736 3.133362 ACCTGAGTCGACCAAAAGTACAA 59.867 43.478 13.01 0.00 0.00 2.41
3209 7823 2.702788 TACGCGTCATGCTTCGGGA 61.703 57.895 18.63 0.00 43.27 5.14
3218 7832 1.625616 GTACTTGCAGTACGCGTCAT 58.374 50.000 18.63 1.56 46.97 3.06
3225 7839 2.729882 CTGGTTGTCGTACTTGCAGTAC 59.270 50.000 13.34 13.34 45.71 2.73
3264 7878 0.025001 CGGCGATGAACAACGATGAC 59.975 55.000 0.00 0.00 0.00 3.06
3267 7881 0.173935 TACCGGCGATGAACAACGAT 59.826 50.000 9.30 0.00 0.00 3.73
3285 7899 1.835494 CCACCAAGGACGAGAGAGTA 58.165 55.000 0.00 0.00 41.22 2.59
3311 7925 1.913762 CCCACCCTCCTCGTCACTT 60.914 63.158 0.00 0.00 0.00 3.16
3354 7968 0.948623 CGACAAGGAACATGACGCCA 60.949 55.000 0.00 0.00 38.32 5.69
3357 7971 1.459592 GAACCGACAAGGAACATGACG 59.540 52.381 0.00 0.00 43.57 4.35
3371 7985 1.083489 GGCGTTGATGATTGAACCGA 58.917 50.000 0.00 0.00 0.00 4.69
3375 7989 1.423450 CGCGGCGTTGATGATTGAA 59.577 52.632 15.36 0.00 0.00 2.69
3405 8019 0.890542 GGCCGATGATAAGCATGGCA 60.891 55.000 16.08 0.00 45.26 4.92
3414 8028 2.753452 GAGTAGAATCCGGCCGATGATA 59.247 50.000 30.73 9.89 0.00 2.15
3438 8052 4.339814 TGTAATGTGAACCCAAGACCAAAC 59.660 41.667 0.00 0.00 0.00 2.93
3467 8081 1.181098 ATGCTCAATATTGCCCCCGC 61.181 55.000 10.76 8.18 0.00 6.13
3468 8082 0.883833 GATGCTCAATATTGCCCCCG 59.116 55.000 10.76 0.00 0.00 5.73
3469 8083 2.165998 GAGATGCTCAATATTGCCCCC 58.834 52.381 10.76 0.00 0.00 5.40
3664 8325 2.024414 GACCATTAGCGCCCTTTCATT 58.976 47.619 2.29 0.00 0.00 2.57
3670 8331 2.746375 CCCAGACCATTAGCGCCCT 61.746 63.158 2.29 0.00 0.00 5.19
3678 8339 2.498441 TGGTATTAGGCCCAGACCATT 58.502 47.619 13.86 0.00 35.26 3.16
3713 8374 6.070767 CCTCAGGTCTTAGATGTTAGGTTTGA 60.071 42.308 0.00 0.00 0.00 2.69
4097 8800 1.550130 CCGTTACCTTCCTGGAGGCA 61.550 60.000 10.85 0.00 40.65 4.75
4765 11320 1.356059 AGAGAGGTACACAGGAGCTGA 59.644 52.381 0.00 0.00 35.18 4.26
4829 11384 1.493772 GATGACCACGAACGTGTTGA 58.506 50.000 22.38 6.56 44.02 3.18
4860 11415 0.249398 AGTAGTTGGTGATGGTCGCC 59.751 55.000 2.65 2.65 46.90 5.54
4884 11439 1.146263 CCACCTAGGGATGCGGTTC 59.854 63.158 14.81 0.00 0.00 3.62
4912 11467 3.597728 CGCTAGGCCGAGGGAGAC 61.598 72.222 23.17 0.74 0.00 3.36
4950 11505 0.469144 TGAAAAAGGCTCCCACCACC 60.469 55.000 0.00 0.00 0.00 4.61
4953 11508 1.186200 GGATGAAAAAGGCTCCCACC 58.814 55.000 0.00 0.00 0.00 4.61
4965 11520 2.608550 GGGGGTGTCCGGGATGAAA 61.609 63.158 0.00 0.00 36.01 2.69
5046 11601 1.381522 CATCGATGTTGGTGCCATCA 58.618 50.000 17.50 4.66 38.90 3.07
5165 11720 4.033776 GTACAGCCAGCCCTGCCA 62.034 66.667 0.00 0.00 36.29 4.92
5168 11723 4.473520 CGGGTACAGCCAGCCCTG 62.474 72.222 0.00 0.00 40.22 4.45
5185 11740 1.694639 CCGGTGAACTCGTAGAACAC 58.305 55.000 0.00 0.00 34.09 3.32
5187 11742 0.038892 TGCCGGTGAACTCGTAGAAC 60.039 55.000 1.90 0.00 34.09 3.01
5192 11747 0.460284 GATCATGCCGGTGAACTCGT 60.460 55.000 1.90 0.00 0.00 4.18
5218 11773 1.141019 GCACAGGCGAGAATACCGA 59.859 57.895 0.00 0.00 0.00 4.69
5286 11841 5.403166 CACCAAGTTTGTCATGCTGTTTATG 59.597 40.000 0.00 0.00 0.00 1.90
5313 11868 0.109226 CGAAGGAGGACAGAACCGTC 60.109 60.000 0.00 0.00 35.03 4.79
5316 11871 0.966920 TGACGAAGGAGGACAGAACC 59.033 55.000 0.00 0.00 0.00 3.62
5326 11881 2.279810 TGCGGTCCATGACGAAGGA 61.280 57.895 8.29 0.00 32.65 3.36
5368 11923 2.575532 CAACATGCCGATTCCACCTAT 58.424 47.619 0.00 0.00 0.00 2.57
5370 11925 1.315257 GCAACATGCCGATTCCACCT 61.315 55.000 0.00 0.00 37.42 4.00
5373 11928 0.035152 AGAGCAACATGCCGATTCCA 60.035 50.000 0.00 0.00 46.52 3.53
5376 11931 1.805254 GCAGAGCAACATGCCGATT 59.195 52.632 0.00 0.00 46.52 3.34
5401 11956 5.127356 GGTATGGCATGATAGGTAGTACTCC 59.873 48.000 10.98 0.48 0.00 3.85
5402 11957 5.163642 CGGTATGGCATGATAGGTAGTACTC 60.164 48.000 10.98 0.00 0.00 2.59
5403 11958 4.705507 CGGTATGGCATGATAGGTAGTACT 59.294 45.833 10.98 0.00 0.00 2.73
5404 11959 4.461781 ACGGTATGGCATGATAGGTAGTAC 59.538 45.833 10.98 0.00 0.00 2.73
5405 11960 4.669700 ACGGTATGGCATGATAGGTAGTA 58.330 43.478 10.98 0.00 0.00 1.82
5406 11961 3.507411 ACGGTATGGCATGATAGGTAGT 58.493 45.455 10.98 0.00 0.00 2.73
5408 11963 3.257375 GTGACGGTATGGCATGATAGGTA 59.743 47.826 10.98 0.00 0.00 3.08
5409 11964 2.037251 GTGACGGTATGGCATGATAGGT 59.963 50.000 10.98 0.70 0.00 3.08
5410 11965 2.300152 AGTGACGGTATGGCATGATAGG 59.700 50.000 10.98 0.00 0.00 2.57
5411 11966 3.320626 CAGTGACGGTATGGCATGATAG 58.679 50.000 10.98 1.45 0.00 2.08
5415 11970 1.765161 CGCAGTGACGGTATGGCATG 61.765 60.000 10.98 0.00 0.00 4.06
5434 11989 9.923786 CGAACTAGTATATCATCAGTAGCATAC 57.076 37.037 0.00 0.00 43.47 2.39
5437 11992 7.981102 ACGAACTAGTATATCATCAGTAGCA 57.019 36.000 0.00 0.00 0.00 3.49
5460 12015 6.662414 TCAAGACATCAATCAAACGGATAC 57.338 37.500 0.00 0.00 34.28 2.24
5468 12033 8.896744 GGTTCATTAGATCAAGACATCAATCAA 58.103 33.333 0.00 0.00 0.00 2.57
5469 12034 8.270030 AGGTTCATTAGATCAAGACATCAATCA 58.730 33.333 0.00 0.00 0.00 2.57
5470 12035 8.674263 AGGTTCATTAGATCAAGACATCAATC 57.326 34.615 0.00 0.00 0.00 2.67
5471 12036 9.471702 AAAGGTTCATTAGATCAAGACATCAAT 57.528 29.630 0.00 0.00 0.00 2.57
5478 12043 9.748708 CAAAACAAAAGGTTCATTAGATCAAGA 57.251 29.630 0.00 0.00 39.29 3.02
5481 12046 9.311916 CAACAAAACAAAAGGTTCATTAGATCA 57.688 29.630 0.00 0.00 39.29 2.92
5490 12055 5.699001 AGTTCACCAACAAAACAAAAGGTTC 59.301 36.000 0.00 0.00 35.09 3.62
5502 12067 8.684386 TTGATGATTAGTAAGTTCACCAACAA 57.316 30.769 0.00 0.00 34.60 2.83
5503 12068 8.684386 TTTGATGATTAGTAAGTTCACCAACA 57.316 30.769 0.00 0.00 34.60 3.33
5504 12069 8.237267 CCTTTGATGATTAGTAAGTTCACCAAC 58.763 37.037 0.00 0.00 0.00 3.77
5505 12070 7.942341 ACCTTTGATGATTAGTAAGTTCACCAA 59.058 33.333 0.00 0.00 0.00 3.67
5506 12071 7.390440 CACCTTTGATGATTAGTAAGTTCACCA 59.610 37.037 0.00 0.00 0.00 4.17
5507 12072 7.148239 CCACCTTTGATGATTAGTAAGTTCACC 60.148 40.741 0.00 0.00 0.00 4.02
5508 12073 7.626452 GCCACCTTTGATGATTAGTAAGTTCAC 60.626 40.741 0.00 0.00 0.00 3.18
5510 12075 6.183360 GGCCACCTTTGATGATTAGTAAGTTC 60.183 42.308 0.00 0.00 0.00 3.01
5511 12076 5.652452 GGCCACCTTTGATGATTAGTAAGTT 59.348 40.000 0.00 0.00 0.00 2.66
5512 12077 5.193679 GGCCACCTTTGATGATTAGTAAGT 58.806 41.667 0.00 0.00 0.00 2.24
5513 12078 5.192927 TGGCCACCTTTGATGATTAGTAAG 58.807 41.667 0.00 0.00 0.00 2.34
5514 12079 5.186256 TGGCCACCTTTGATGATTAGTAA 57.814 39.130 0.00 0.00 0.00 2.24
5516 12081 3.737559 TGGCCACCTTTGATGATTAGT 57.262 42.857 0.00 0.00 0.00 2.24
5517 12082 4.467769 AGATGGCCACCTTTGATGATTAG 58.532 43.478 8.16 0.00 0.00 1.73
5518 12083 4.464008 GAGATGGCCACCTTTGATGATTA 58.536 43.478 8.16 0.00 0.00 1.75
5519 12084 3.294214 GAGATGGCCACCTTTGATGATT 58.706 45.455 8.16 0.00 0.00 2.57
5520 12085 2.747467 CGAGATGGCCACCTTTGATGAT 60.747 50.000 8.16 0.00 0.00 2.45
5521 12086 1.407299 CGAGATGGCCACCTTTGATGA 60.407 52.381 8.16 0.00 0.00 2.92
5522 12087 1.019673 CGAGATGGCCACCTTTGATG 58.980 55.000 8.16 0.00 0.00 3.07
5523 12088 0.620556 ACGAGATGGCCACCTTTGAT 59.379 50.000 8.16 0.00 0.00 2.57
5524 12089 0.321564 CACGAGATGGCCACCTTTGA 60.322 55.000 8.16 0.00 0.00 2.69
5525 12090 1.308069 CCACGAGATGGCCACCTTTG 61.308 60.000 8.16 4.91 43.24 2.77
5526 12091 1.002134 CCACGAGATGGCCACCTTT 60.002 57.895 8.16 0.00 43.24 3.11
5611 12176 0.907486 CAGAGGCAGATGAGGACCAA 59.093 55.000 0.00 0.00 0.00 3.67
5634 12199 0.039074 ACGACAGACCGAAGCTGAAG 60.039 55.000 0.00 0.00 36.86 3.02
5738 12303 0.600557 CACGAAGGAGAGACACAGCT 59.399 55.000 0.00 0.00 0.00 4.24
5802 12367 0.809385 CGGCGTAGAAGAGGAAGACA 59.191 55.000 0.00 0.00 0.00 3.41
5822 12387 1.202915 TGGTCATTGCAAGAAGCCAGA 60.203 47.619 4.94 0.00 44.83 3.86
5832 12397 1.452110 CCACGAAGATGGTCATTGCA 58.548 50.000 0.00 0.00 34.77 4.08
5833 12398 0.099436 GCCACGAAGATGGTCATTGC 59.901 55.000 0.00 0.00 42.28 3.56
5862 12427 4.653888 ACGCCCTTGGTTTCCGGG 62.654 66.667 0.00 0.00 41.06 5.73
5892 12457 2.733671 CGTCCACACTGAGCGCATG 61.734 63.158 11.47 4.65 0.00 4.06
5897 12462 2.048127 GTCCCGTCCACACTGAGC 60.048 66.667 0.00 0.00 0.00 4.26
5898 12463 0.321671 AATGTCCCGTCCACACTGAG 59.678 55.000 0.00 0.00 0.00 3.35
5940 12505 2.173519 CTTTCATGGTTGGCATCCTGT 58.826 47.619 15.29 2.18 0.00 4.00
6010 12579 7.429340 GCTGAAATAAATTACACATCACTTCCG 59.571 37.037 0.00 0.00 0.00 4.30
6087 12663 2.951229 AACCCAACACCCTCTTACAG 57.049 50.000 0.00 0.00 0.00 2.74
6185 14230 3.089284 GGTGTTTAGCCCTTGCAATAGT 58.911 45.455 0.00 0.00 41.13 2.12
6313 14597 7.282224 TGCAGTCAATACTTTTTGTAGACAACT 59.718 33.333 0.00 0.00 32.16 3.16
6314 14598 7.414436 TGCAGTCAATACTTTTTGTAGACAAC 58.586 34.615 0.00 0.00 32.16 3.32
6317 14601 9.463443 AAAATGCAGTCAATACTTTTTGTAGAC 57.537 29.630 0.00 0.00 34.24 2.59
6356 14641 0.166814 GCATCTGTGCGGAGTTCAAC 59.833 55.000 0.00 0.00 42.28 3.18
6417 14795 4.278919 TGAACATCGCCAATTATCATGCAT 59.721 37.500 0.00 0.00 0.00 3.96
6449 14827 4.762251 GCCCCTATGGAAAAGTGATCATAC 59.238 45.833 0.00 0.00 35.39 2.39
6455 14833 2.647299 TCTTGCCCCTATGGAAAAGTGA 59.353 45.455 0.00 0.00 35.39 3.41
6472 14850 0.806102 CACCGTATCCTGGCGTCTTG 60.806 60.000 0.00 0.00 0.00 3.02
6473 14851 1.255667 ACACCGTATCCTGGCGTCTT 61.256 55.000 0.00 0.00 0.00 3.01
6478 14856 0.035820 TCCAAACACCGTATCCTGGC 60.036 55.000 0.00 0.00 0.00 4.85
6485 14863 0.176219 CGGGCTATCCAAACACCGTA 59.824 55.000 0.00 0.00 36.78 4.02
6487 14865 2.469516 GCGGGCTATCCAAACACCG 61.470 63.158 0.00 0.00 43.81 4.94
6493 14871 1.748879 GTGCTTGCGGGCTATCCAA 60.749 57.895 2.59 0.00 34.36 3.53
6495 14873 2.902343 GGTGCTTGCGGGCTATCC 60.902 66.667 2.59 0.07 0.00 2.59
6496 14874 3.272334 CGGTGCTTGCGGGCTATC 61.272 66.667 2.59 0.00 0.00 2.08
6529 14907 3.161866 ACCGTTGAATGGGCTAATTTGT 58.838 40.909 8.51 0.00 0.00 2.83
6545 14923 5.411669 GTCATTTGGATAAGTGAAGACCGTT 59.588 40.000 0.00 0.00 34.81 4.44
6548 14926 4.332819 CGGTCATTTGGATAAGTGAAGACC 59.667 45.833 0.00 0.00 34.81 3.85
6557 14935 3.264104 GTTCCGACGGTCATTTGGATAA 58.736 45.455 14.79 0.00 0.00 1.75
6559 14937 1.002659 TGTTCCGACGGTCATTTGGAT 59.997 47.619 14.79 0.00 0.00 3.41
6707 15103 3.273886 TCCTAGGGTTGTCCTTCTCCATA 59.726 47.826 9.46 0.00 45.47 2.74
6762 15158 3.069158 CGTACGAGGGATCCCAGTTTTAT 59.931 47.826 32.69 10.13 38.92 1.40
6769 15165 3.214123 CGCGTACGAGGGATCCCA 61.214 66.667 32.69 9.24 43.93 4.37
6789 15185 1.471153 GGGCGAGCCACTACTTACTTC 60.471 57.143 16.65 0.00 37.98 3.01
6793 15189 0.689745 ATGGGGCGAGCCACTACTTA 60.690 55.000 18.04 0.00 40.96 2.24
6823 15219 1.542492 ATGGTTGCAGCTTCTTCAGG 58.458 50.000 0.00 0.00 0.00 3.86
6849 15245 2.354704 GGCGGATTATTCGATGGGATGA 60.355 50.000 0.00 0.00 0.00 2.92
6851 15247 1.628340 TGGCGGATTATTCGATGGGAT 59.372 47.619 0.00 0.00 0.00 3.85
6856 15252 2.567169 TGGATCTGGCGGATTATTCGAT 59.433 45.455 10.75 0.00 34.33 3.59
6857 15253 1.967779 TGGATCTGGCGGATTATTCGA 59.032 47.619 10.75 0.00 34.33 3.71
6867 15263 2.515290 TGCTGCATGGATCTGGCG 60.515 61.111 0.00 0.00 0.00 5.69
6878 15274 4.980702 CCTGGCCCTTGTGCTGCA 62.981 66.667 0.00 0.00 0.00 4.41
6891 15287 2.355197 TGTCATAACGCATGAACCTGG 58.645 47.619 0.00 0.00 45.28 4.45
6928 15644 1.281867 TCTGTATGCCAAAGGACCTGG 59.718 52.381 0.00 0.00 36.99 4.45
6931 15647 4.973168 TGATATCTGTATGCCAAAGGACC 58.027 43.478 3.98 0.00 0.00 4.46
6942 15658 7.761981 ATGATAAAGGGGCTGATATCTGTAT 57.238 36.000 10.85 0.88 0.00 2.29
6943 15659 8.708378 CATATGATAAAGGGGCTGATATCTGTA 58.292 37.037 10.85 0.00 0.00 2.74
6948 15664 6.915468 ACCATATGATAAAGGGGCTGATAT 57.085 37.500 3.65 0.00 0.00 1.63
6949 15665 7.461043 AGTTACCATATGATAAAGGGGCTGATA 59.539 37.037 3.65 0.00 0.00 2.15
6973 16098 2.556286 GCAGAAGGCCGCTAAAAGT 58.444 52.632 0.00 0.00 36.11 2.66
6995 16121 3.087031 AGACCTATCGTGTTTCTTCCGA 58.913 45.455 0.00 0.00 34.79 4.55
6997 16123 7.039882 TGATAAAGACCTATCGTGTTTCTTCC 58.960 38.462 0.00 0.00 38.74 3.46
7015 16141 8.929827 TTTGGTGCACATATCATTTGATAAAG 57.070 30.769 20.43 3.80 40.09 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.