Multiple sequence alignment - TraesCS2D01G316500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G316500 chr2D 100.000 3626 0 0 1 3626 405631281 405634906 0.000000e+00 6697.0
1 TraesCS2D01G316500 chr2B 94.770 1587 69 4 500 2086 481162432 481164004 0.000000e+00 2459.0
2 TraesCS2D01G316500 chr2B 93.554 1241 46 12 2394 3626 481164409 481165623 0.000000e+00 1818.0
3 TraesCS2D01G316500 chr2B 84.646 495 40 19 1 463 481161741 481162231 9.170000e-126 460.0
4 TraesCS2D01G316500 chr2A 91.161 1765 100 29 243 1986 543761300 543763029 0.000000e+00 2344.0
5 TraesCS2D01G316500 chr2A 93.086 405 21 4 2434 2835 543763490 543763890 1.450000e-163 586.0
6 TraesCS2D01G316500 chr2A 87.751 449 26 8 1967 2386 543763040 543763488 6.990000e-137 497.0
7 TraesCS2D01G316500 chr7A 91.304 69 5 1 339 407 19566481 19566548 3.860000e-15 93.5
8 TraesCS2D01G316500 chr6A 100.000 30 0 0 390 419 54349587 54349558 5.060000e-04 56.5
9 TraesCS2D01G316500 chr7D 96.774 31 1 0 3447 3477 108343215 108343185 7.000000e-03 52.8
10 TraesCS2D01G316500 chr7D 96.774 31 1 0 3447 3477 108364884 108364854 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G316500 chr2D 405631281 405634906 3625 False 6697.000000 6697 100.000 1 3626 1 chr2D.!!$F1 3625
1 TraesCS2D01G316500 chr2B 481161741 481165623 3882 False 1579.000000 2459 90.990 1 3626 3 chr2B.!!$F1 3625
2 TraesCS2D01G316500 chr2A 543761300 543763890 2590 False 1142.333333 2344 90.666 243 2835 3 chr2A.!!$F1 2592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1142 0.031178 CAAGCAGGTTGCCACAAGTC 59.969 55.0 0.0 0.0 46.52 3.01 F
1100 1312 0.315382 GTTTCATTCGCATCGGCTCG 60.315 55.0 0.0 0.0 38.10 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2348 0.397941 TTCCCCTGAGCACTTGTCTG 59.602 55.0 0.00 0.0 0.00 3.51 R
2905 3259 0.912487 TGGGTAGGCCGTTCCTTCAT 60.912 55.0 12.25 0.0 44.75 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 9.103861 TGGAAAATTGTTCTTGGTATGAAAAAC 57.896 29.630 0.00 0.00 0.00 2.43
33 35 8.556194 GGAAAATTGTTCTTGGTATGAAAAACC 58.444 33.333 0.00 0.00 37.53 3.27
38 40 8.710835 TTGTTCTTGGTATGAAAAACCTTTTC 57.289 30.769 5.16 5.16 37.91 2.29
78 81 8.921670 GTTTATGGATTAAAAATGTTCGCAAGT 58.078 29.630 0.00 0.00 33.00 3.16
154 157 7.770433 ACAAAAAGAAAGGAAAGGAAAATCTGG 59.230 33.333 0.00 0.00 0.00 3.86
158 161 7.862274 AGAAAGGAAAGGAAAATCTGGAAAT 57.138 32.000 0.00 0.00 0.00 2.17
270 274 5.163581 GGTCTCGCGCTTCCCTTTATATATA 60.164 44.000 5.56 0.00 0.00 0.86
313 330 1.507562 TCCATACAACACACGCACAG 58.492 50.000 0.00 0.00 0.00 3.66
378 423 5.415701 CCATAACACTCCAAGCAAACTACAT 59.584 40.000 0.00 0.00 0.00 2.29
387 432 3.710209 AGCAAACTACATGAGGAAGCT 57.290 42.857 0.00 0.00 0.00 3.74
486 569 3.270000 GGCGGCGCCTTTAAGAAA 58.730 55.556 41.44 0.00 46.69 2.52
533 742 4.682021 AATCCAAGGATCAAGGTTTCCT 57.318 40.909 1.37 0.00 44.35 3.36
550 759 3.401033 TCCTTCGAAGCAACATGAAGA 57.599 42.857 19.99 5.32 40.12 2.87
565 774 7.410942 GCAACATGAAGAACGAAGAGTAACTAG 60.411 40.741 0.00 0.00 0.00 2.57
600 809 2.505819 AGAAGGAAATGACGCCCATAGT 59.494 45.455 0.00 0.00 34.45 2.12
828 1039 8.370940 CAGTTTATAGATATCCTGGTGATGTGT 58.629 37.037 0.00 0.00 34.76 3.72
889 1100 6.016024 AGACTGATAAGATCTAAGCTGAGCAG 60.016 42.308 7.39 0.00 0.00 4.24
931 1142 0.031178 CAAGCAGGTTGCCACAAGTC 59.969 55.000 0.00 0.00 46.52 3.01
982 1193 1.058404 CGACGTCGAAGAAACCTTCC 58.942 55.000 33.35 0.00 43.02 3.46
1080 1292 3.257561 CGGCATCGAAGGAGCACG 61.258 66.667 0.00 0.00 39.00 5.34
1100 1312 0.315382 GTTTCATTCGCATCGGCTCG 60.315 55.000 0.00 0.00 38.10 5.03
1104 1316 3.411418 ATTCGCATCGGCTCGTCGT 62.411 57.895 0.00 0.00 38.10 4.34
1326 1538 1.883638 GCCTTCATGGTGAGTGCAGAA 60.884 52.381 0.00 0.00 38.35 3.02
1328 1540 2.289882 CCTTCATGGTGAGTGCAGAAGA 60.290 50.000 9.04 0.00 35.67 2.87
1353 1565 2.355132 ACGGTTGCACGTGTTAATTTCA 59.645 40.909 18.38 1.15 46.64 2.69
1356 1568 3.917985 GGTTGCACGTGTTAATTTCATCC 59.082 43.478 18.38 9.10 0.00 3.51
1383 1595 4.962362 TCCTTCTCACATTCACAGGCTATA 59.038 41.667 0.00 0.00 0.00 1.31
1385 1597 5.699915 CCTTCTCACATTCACAGGCTATATG 59.300 44.000 0.00 0.00 0.00 1.78
1472 1685 8.829373 AAGATAAGAGCATTGGAAGGTAAATT 57.171 30.769 0.00 0.00 0.00 1.82
1548 1763 6.293845 GCATTTTCATCTCAACTTCTGTCTGT 60.294 38.462 0.00 0.00 0.00 3.41
1549 1764 6.609237 TTTTCATCTCAACTTCTGTCTGTG 57.391 37.500 0.00 0.00 0.00 3.66
1559 1774 6.038161 TCAACTTCTGTCTGTGGTTGTAATTG 59.962 38.462 0.00 0.00 38.53 2.32
1560 1775 4.275936 ACTTCTGTCTGTGGTTGTAATTGC 59.724 41.667 0.00 0.00 0.00 3.56
1568 1783 2.341168 GTGGTTGTAATTGCAAATCGCG 59.659 45.455 10.72 0.00 46.97 5.87
1570 1785 2.592459 GGTTGTAATTGCAAATCGCGTC 59.408 45.455 10.72 0.00 46.97 5.19
1595 1810 0.460311 ATAAGGTGGAGAAGACGGCG 59.540 55.000 4.80 4.80 0.00 6.46
1855 2070 4.036734 AGTTCCTCAACGTTTACACTACGA 59.963 41.667 0.00 0.00 41.33 3.43
2028 2273 4.681074 TGTGTAGCGGATATCCAATTCA 57.319 40.909 21.70 11.63 35.14 2.57
2047 2292 0.536006 AGCTCCGGATAGCATTTGCC 60.536 55.000 17.13 0.00 45.30 4.52
2102 2348 8.791355 TTAAAAGACCACGAAGAAAAATTAGC 57.209 30.769 0.00 0.00 0.00 3.09
2103 2349 6.385649 AAAGACCACGAAGAAAAATTAGCA 57.614 33.333 0.00 0.00 0.00 3.49
2104 2350 5.613358 AGACCACGAAGAAAAATTAGCAG 57.387 39.130 0.00 0.00 0.00 4.24
2105 2351 5.305585 AGACCACGAAGAAAAATTAGCAGA 58.694 37.500 0.00 0.00 0.00 4.26
2109 2383 5.853282 CCACGAAGAAAAATTAGCAGACAAG 59.147 40.000 0.00 0.00 0.00 3.16
2198 2473 5.649831 GGCATTTCTAGACCACTGAATCTTT 59.350 40.000 0.00 0.00 0.00 2.52
2227 2502 2.287368 GGCGGACGAAACAAAATTGTCT 60.287 45.455 0.00 0.00 41.31 3.41
2274 2549 2.416547 CGCATTGGACACTACAAGAAGG 59.583 50.000 0.00 0.00 0.00 3.46
2337 2612 9.695526 TTCATTCTGAATTTACTGTTCATTTGG 57.304 29.630 0.00 0.00 35.26 3.28
2359 2634 2.159282 TCCGGAGAGCTAAAACGTCATC 60.159 50.000 0.00 0.00 0.00 2.92
2362 2637 3.190874 GGAGAGCTAAAACGTCATCCTG 58.809 50.000 0.00 0.00 0.00 3.86
2371 2646 5.490139 AAAACGTCATCCTGATAGCATTG 57.510 39.130 0.00 0.00 0.00 2.82
2387 2662 2.486191 GCATTGGATGGCAGCTAGTAGT 60.486 50.000 1.50 0.00 0.00 2.73
2388 2663 3.244215 GCATTGGATGGCAGCTAGTAGTA 60.244 47.826 1.50 0.00 0.00 1.82
2390 2665 5.555017 CATTGGATGGCAGCTAGTAGTAAT 58.445 41.667 1.50 0.00 0.00 1.89
2392 2667 4.960938 TGGATGGCAGCTAGTAGTAATTG 58.039 43.478 1.50 0.00 0.00 2.32
2457 2808 7.433131 GCATGTGATGATATTCGTTTTCATGTT 59.567 33.333 0.00 0.00 33.78 2.71
2461 2812 7.967854 GTGATGATATTCGTTTTCATGTTGGAA 59.032 33.333 0.00 0.00 30.48 3.53
2516 2867 5.353123 GGTTAACGCAGGTTGATGAGATAAA 59.647 40.000 0.00 0.00 36.90 1.40
2731 3085 7.101054 TGTCGATAAATAACCAGTAACAGCTT 58.899 34.615 0.00 0.00 0.00 3.74
2765 3119 2.449464 TCATTTGGCCCTTGTCTCATG 58.551 47.619 0.00 0.00 0.00 3.07
2773 3127 2.618816 GCCCTTGTCTCATGGTCATGAA 60.619 50.000 13.73 4.13 46.10 2.57
2885 3239 7.093902 CGTATCCCTTAAAGCTCACCATATCTA 60.094 40.741 0.00 0.00 0.00 1.98
2892 3246 6.658188 AAAGCTCACCATATCTAGTAGTCC 57.342 41.667 0.00 0.00 0.00 3.85
2903 3257 7.728981 CCATATCTAGTAGTCCCCACTAAGAAA 59.271 40.741 0.00 0.00 36.84 2.52
2905 3259 9.725206 ATATCTAGTAGTCCCCACTAAGAAAAA 57.275 33.333 0.00 0.00 36.84 1.94
2932 3286 2.954684 CGGCCTACCCAGCAGAACA 61.955 63.158 0.00 0.00 0.00 3.18
2941 3295 2.110011 ACCCAGCAGAACATTTTACCCT 59.890 45.455 0.00 0.00 0.00 4.34
2998 3356 5.952347 AGTCAGTCACTTTTTCCTTTTTCCT 59.048 36.000 0.00 0.00 26.56 3.36
3073 3431 2.052782 AAGCCAGAACACTTTTCCGT 57.947 45.000 0.00 0.00 0.00 4.69
3106 3464 1.067142 ACGCGTGTGTGATTATGAGGT 60.067 47.619 12.93 0.00 0.00 3.85
3121 3479 9.506018 TGATTATGAGGTAACACCAATGATATG 57.494 33.333 0.00 0.00 41.95 1.78
3142 3500 9.142515 GATATGAAATGCAACTCATTTTTCACA 57.857 29.630 16.46 4.95 46.12 3.58
3150 3508 5.176223 GCAACTCATTTTTCACATGTTGAGG 59.824 40.000 21.21 9.93 36.43 3.86
3254 3612 7.064134 GCAATGTGTGTGCAACTTATACTACTA 59.936 37.037 0.00 0.00 41.80 1.82
3257 3615 7.832769 TGTGTGTGCAACTTATACTACTATCA 58.167 34.615 0.00 0.00 38.04 2.15
3424 3783 8.654215 GTTTATTCTACCTTAGAACCACTTTCG 58.346 37.037 0.00 0.00 46.58 3.46
3480 3839 2.110578 AGGGTAATGCCAATGCCTTTC 58.889 47.619 0.00 0.00 39.65 2.62
3605 3964 4.657814 TTTTGCCTCCTTCCTACATCTT 57.342 40.909 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.679661 AAAGGTTTTTCATACCAAGAACAATTT 57.320 25.926 0.00 0.00 38.16 1.82
13 14 7.489757 CGAAAAGGTTTTTCATACCAAGAACAA 59.510 33.333 12.99 0.00 38.16 2.83
19 20 6.658188 ATCCGAAAAGGTTTTTCATACCAA 57.342 33.333 12.99 0.00 41.99 3.67
20 21 6.658188 AATCCGAAAAGGTTTTTCATACCA 57.342 33.333 12.99 0.00 41.99 3.25
21 22 7.956420 AAAATCCGAAAAGGTTTTTCATACC 57.044 32.000 12.99 0.00 44.40 2.73
51 53 8.818141 TTGCGAACATTTTTAATCCATAAACA 57.182 26.923 0.00 0.00 33.26 2.83
123 126 9.513906 TTTTCCTTTCCTTTCTTTTTGTTCATT 57.486 25.926 0.00 0.00 0.00 2.57
124 127 9.685276 ATTTTCCTTTCCTTTCTTTTTGTTCAT 57.315 25.926 0.00 0.00 0.00 2.57
125 128 9.161629 GATTTTCCTTTCCTTTCTTTTTGTTCA 57.838 29.630 0.00 0.00 0.00 3.18
127 130 9.166173 CAGATTTTCCTTTCCTTTCTTTTTGTT 57.834 29.630 0.00 0.00 0.00 2.83
128 131 7.770433 CCAGATTTTCCTTTCCTTTCTTTTTGT 59.230 33.333 0.00 0.00 0.00 2.83
129 132 7.986889 TCCAGATTTTCCTTTCCTTTCTTTTTG 59.013 33.333 0.00 0.00 0.00 2.44
134 137 7.862274 ATTTCCAGATTTTCCTTTCCTTTCT 57.138 32.000 0.00 0.00 0.00 2.52
135 138 9.996554 TTTATTTCCAGATTTTCCTTTCCTTTC 57.003 29.630 0.00 0.00 0.00 2.62
218 222 4.453478 GGGTAAAGGTTGTAGAAGGTTTCG 59.547 45.833 0.00 0.00 34.02 3.46
246 250 0.179081 ATAAAGGGAAGCGCGAGACC 60.179 55.000 12.10 8.97 0.00 3.85
252 256 7.141100 TGCTTTTATATATAAAGGGAAGCGC 57.859 36.000 22.62 0.00 36.16 5.92
270 274 6.266168 TGGATTTGTATGATCGTTGCTTTT 57.734 33.333 0.00 0.00 0.00 2.27
291 295 1.130373 GTGCGTGTGTTGTATGGATGG 59.870 52.381 0.00 0.00 0.00 3.51
313 330 4.423625 AACACCCATGTATCTAGCCTTC 57.576 45.455 0.00 0.00 38.45 3.46
378 423 1.696336 AGACTTCAAGCAGCTTCCTCA 59.304 47.619 4.07 0.00 0.00 3.86
387 432 1.188219 AGCTCCGGAGACTTCAAGCA 61.188 55.000 35.69 0.00 31.25 3.91
446 491 3.025978 TGGATTACCCGACTTGTCGTAT 58.974 45.455 19.61 10.90 37.93 3.06
452 497 1.379527 GCCTTGGATTACCCGACTTG 58.620 55.000 0.00 0.00 37.93 3.16
480 563 1.546923 TCCGATGTCGTGCCTTTCTTA 59.453 47.619 1.44 0.00 37.74 2.10
486 569 4.796231 GCGTCCGATGTCGTGCCT 62.796 66.667 1.44 0.00 37.74 4.75
512 721 4.682021 AGGAAACCTTGATCCTTGGATT 57.318 40.909 3.43 0.00 43.59 3.01
533 742 3.127589 TCGTTCTTCATGTTGCTTCGAA 58.872 40.909 0.00 0.00 0.00 3.71
550 759 3.124297 CGTCGTCCTAGTTACTCTTCGTT 59.876 47.826 0.00 0.00 0.00 3.85
565 774 1.014564 CCTTCTTGAAGGCGTCGTCC 61.015 60.000 15.43 0.00 32.43 4.79
828 1039 5.813157 TCAAACGTGAAAGTGACAATCAGTA 59.187 36.000 0.00 0.00 28.24 2.74
889 1100 3.313526 TGTTGCTTTCTTCTGCAGAGTTC 59.686 43.478 17.43 5.20 40.46 3.01
931 1142 5.878116 TCTTTATGGGTTTCTACGGAACATG 59.122 40.000 0.00 0.00 0.00 3.21
982 1193 2.288702 CCATGCGTGAGATCTTAGGGAG 60.289 54.545 7.72 1.67 0.00 4.30
1041 1253 1.413077 GAAATCCCCGGAGTGTAGAGG 59.587 57.143 0.73 0.00 0.00 3.69
1080 1292 0.028110 GAGCCGATGCGAATGAAACC 59.972 55.000 0.00 0.00 44.33 3.27
1100 1312 2.582498 CAAGGATCCGCGGACGAC 60.582 66.667 33.75 23.02 43.93 4.34
1104 1316 3.479203 ATGGCAAGGATCCGCGGA 61.479 61.111 33.12 33.12 0.00 5.54
1326 1538 0.103572 ACACGTGCAACCGTAACTCT 59.896 50.000 17.22 0.00 39.45 3.24
1328 1540 2.222007 TAACACGTGCAACCGTAACT 57.778 45.000 17.22 0.00 39.45 2.24
1347 1559 7.729124 ATGTGAGAAGGAAATGGATGAAATT 57.271 32.000 0.00 0.00 0.00 1.82
1348 1560 7.398047 TGAATGTGAGAAGGAAATGGATGAAAT 59.602 33.333 0.00 0.00 0.00 2.17
1349 1561 6.720748 TGAATGTGAGAAGGAAATGGATGAAA 59.279 34.615 0.00 0.00 0.00 2.69
1350 1562 6.151648 GTGAATGTGAGAAGGAAATGGATGAA 59.848 38.462 0.00 0.00 0.00 2.57
1353 1565 5.573219 TGTGAATGTGAGAAGGAAATGGAT 58.427 37.500 0.00 0.00 0.00 3.41
1356 1568 4.380233 GCCTGTGAATGTGAGAAGGAAATG 60.380 45.833 0.00 0.00 0.00 2.32
1383 1595 1.625818 GTCACCCTGAGAGAACCACAT 59.374 52.381 0.00 0.00 0.00 3.21
1385 1597 0.321996 GGTCACCCTGAGAGAACCAC 59.678 60.000 0.00 0.00 0.00 4.16
1472 1685 6.127338 ACAGAAGTCGTGGATATCTGAATCAA 60.127 38.462 7.98 0.00 39.85 2.57
1548 1763 2.030717 ACGCGATTTGCAATTACAACCA 60.031 40.909 15.93 0.00 46.97 3.67
1549 1764 2.591133 ACGCGATTTGCAATTACAACC 58.409 42.857 15.93 0.00 46.97 3.77
1559 1774 3.182572 CCTTATCTACAGACGCGATTTGC 59.817 47.826 15.93 0.00 41.47 3.68
1560 1775 4.207224 CACCTTATCTACAGACGCGATTTG 59.793 45.833 15.93 10.52 0.00 2.32
1568 1783 5.220892 CGTCTTCTCCACCTTATCTACAGAC 60.221 48.000 0.00 0.00 0.00 3.51
1570 1785 4.036971 CCGTCTTCTCCACCTTATCTACAG 59.963 50.000 0.00 0.00 0.00 2.74
1595 1810 1.255667 TTACCTCGACTGCCACCTCC 61.256 60.000 0.00 0.00 0.00 4.30
1782 1997 7.357303 CAAAACGTGCAAGTAATAAACTAGGT 58.643 34.615 5.50 0.00 37.50 3.08
2028 2273 0.536006 GGCAAATGCTATCCGGAGCT 60.536 55.000 11.34 0.00 43.27 4.09
2047 2292 3.246463 AAAAACATTTTTAACGCGCAGGG 59.754 39.130 5.73 0.00 41.59 4.45
2102 2348 0.397941 TTCCCCTGAGCACTTGTCTG 59.602 55.000 0.00 0.00 0.00 3.51
2103 2349 1.140312 TTTCCCCTGAGCACTTGTCT 58.860 50.000 0.00 0.00 0.00 3.41
2104 2350 1.882623 CTTTTCCCCTGAGCACTTGTC 59.117 52.381 0.00 0.00 0.00 3.18
2105 2351 1.986882 CTTTTCCCCTGAGCACTTGT 58.013 50.000 0.00 0.00 0.00 3.16
2109 2383 3.686760 GGCTTTTCCCCTGAGCAC 58.313 61.111 0.00 0.00 38.14 4.40
2133 2407 7.992180 ACTTGATTTTCTGCACAAGTTAAAG 57.008 32.000 11.22 1.46 46.69 1.85
2213 2488 7.378461 TCATGCGAAACTAGACAATTTTGTTTC 59.622 33.333 0.00 0.00 42.43 2.78
2227 2502 5.629020 GCTTGACAATTTTCATGCGAAACTA 59.371 36.000 14.42 0.00 40.84 2.24
2236 2511 3.367992 TGCGTGCTTGACAATTTTCAT 57.632 38.095 0.00 0.00 0.00 2.57
2337 2612 1.068055 TGACGTTTTAGCTCTCCGGAC 60.068 52.381 0.00 0.00 0.00 4.79
2359 2634 2.160205 CTGCCATCCAATGCTATCAGG 58.840 52.381 0.00 0.00 0.00 3.86
2362 2637 1.906990 AGCTGCCATCCAATGCTATC 58.093 50.000 0.00 0.00 31.71 2.08
2371 2646 4.202367 ACCAATTACTACTAGCTGCCATCC 60.202 45.833 0.00 0.00 0.00 3.51
2387 2662 6.104146 TGTTGCTCAGTGTACTACCAATTA 57.896 37.500 0.00 0.00 0.00 1.40
2388 2663 4.968259 TGTTGCTCAGTGTACTACCAATT 58.032 39.130 0.00 0.00 0.00 2.32
2390 2665 4.202315 ACATGTTGCTCAGTGTACTACCAA 60.202 41.667 0.00 0.00 0.00 3.67
2392 2667 3.679980 CACATGTTGCTCAGTGTACTACC 59.320 47.826 0.00 0.00 0.00 3.18
2457 2808 8.380742 AGAGAGAGTTTCATTTATACCTTCCA 57.619 34.615 0.00 0.00 0.00 3.53
2516 2867 1.279271 CCACGGAATCCACCTCTTTCT 59.721 52.381 0.00 0.00 0.00 2.52
2703 3057 8.395633 GCTGTTACTGGTTATTTATCGACATTT 58.604 33.333 0.00 0.00 0.00 2.32
2731 3085 5.302568 GGGCCAAATGATAATGATGAACTCA 59.697 40.000 4.39 0.00 38.53 3.41
2765 3119 8.134895 TCTGTACTGAAACAAAAATTCATGACC 58.865 33.333 0.00 0.00 36.30 4.02
2855 3209 4.571176 GGTGAGCTTTAAGGGATACGAAAG 59.429 45.833 0.00 0.00 35.62 2.62
2885 3239 6.697641 TCATTTTTCTTAGTGGGGACTACT 57.302 37.500 0.00 0.00 0.00 2.57
2892 3246 5.335661 CCGTTCCTTCATTTTTCTTAGTGGG 60.336 44.000 0.00 0.00 0.00 4.61
2903 3257 1.340697 GGGTAGGCCGTTCCTTCATTT 60.341 52.381 12.25 0.00 44.75 2.32
2905 3259 0.912487 TGGGTAGGCCGTTCCTTCAT 60.912 55.000 12.25 0.00 44.75 2.57
3073 3431 4.056125 CGCGTGCAGAGGGACAGA 62.056 66.667 0.00 0.00 34.61 3.41
3106 3464 8.065473 AGTTGCATTTCATATCATTGGTGTTA 57.935 30.769 0.00 0.00 0.00 2.41
3418 3777 8.931775 ACAAAGAAATAAAACAAAAGCGAAAGT 58.068 25.926 0.00 0.00 0.00 2.66
3527 3886 1.065126 GCCATTGCCTCTGGACTACTT 60.065 52.381 0.78 0.00 35.70 2.24
3564 3923 7.492020 GGCAAAAATGTCATATATTTCAGTGCA 59.508 33.333 0.00 0.00 34.64 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.