Multiple sequence alignment - TraesCS2D01G316200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G316200 chr2D 100.000 7355 0 0 1 7355 405414860 405422214 0.000000e+00 13583.0
1 TraesCS2D01G316200 chr2D 81.422 436 63 13 4484 4909 211197257 211196830 2.540000e-89 340.0
2 TraesCS2D01G316200 chr2D 94.444 36 2 0 6716 6751 595480669 595480634 1.000000e-03 56.5
3 TraesCS2D01G316200 chr2B 94.061 5944 246 46 1456 7355 481048970 481054850 0.000000e+00 8922.0
4 TraesCS2D01G316200 chr2B 91.849 822 42 11 518 1327 481048160 481048968 0.000000e+00 1123.0
5 TraesCS2D01G316200 chr2B 86.779 416 48 7 4456 4870 764068877 764068468 2.420000e-124 457.0
6 TraesCS2D01G316200 chr2B 84.874 476 44 10 1 456 480940829 480941296 8.700000e-124 455.0
7 TraesCS2D01G316200 chr2B 100.000 46 0 0 1509 1554 481049049 481049094 1.310000e-12 86.1
8 TraesCS2D01G316200 chr2A 83.388 2119 257 47 5276 7341 543624645 543626721 0.000000e+00 1875.0
9 TraesCS2D01G316200 chr2A 87.253 1671 120 27 1860 3480 543621068 543622695 0.000000e+00 1820.0
10 TraesCS2D01G316200 chr2A 92.404 882 37 12 515 1380 543619598 543620465 0.000000e+00 1230.0
11 TraesCS2D01G316200 chr2A 85.654 1178 126 28 3522 4681 543622973 543624125 0.000000e+00 1199.0
12 TraesCS2D01G316200 chr2A 82.051 507 56 21 4743 5234 543624159 543624645 4.130000e-107 399.0
13 TraesCS2D01G316200 chr2A 92.571 175 11 2 1702 1875 543620590 543620763 4.410000e-62 250.0
14 TraesCS2D01G316200 chr2A 87.437 199 24 1 1 199 543604760 543604957 2.060000e-55 228.0
15 TraesCS2D01G316200 chr2A 94.697 132 5 2 1527 1658 543620466 543620595 3.480000e-48 204.0
16 TraesCS2D01G316200 chr7D 83.716 436 56 12 4460 4887 160489605 160490033 1.490000e-106 398.0
17 TraesCS2D01G316200 chr7D 100.000 28 0 0 482 509 259836102 259836075 1.300000e-02 52.8
18 TraesCS2D01G316200 chr5B 82.276 457 68 10 4457 4910 678488855 678489301 4.160000e-102 383.0
19 TraesCS2D01G316200 chr7B 82.949 434 55 14 4460 4885 121501910 121502332 2.510000e-99 374.0
20 TraesCS2D01G316200 chr7B 82.105 95 13 4 2310 2402 121390729 121390637 2.200000e-10 78.7
21 TraesCS2D01G316200 chr7A 81.585 467 70 15 4457 4914 55129322 55128863 9.010000e-99 372.0
22 TraesCS2D01G316200 chr7A 75.229 327 56 14 2318 2636 255918885 255919194 1.670000e-26 132.0
23 TraesCS2D01G316200 chr7A 94.444 36 2 0 6716 6751 645059051 645059016 1.000000e-03 56.5
24 TraesCS2D01G316200 chr5A 82.547 424 59 8 4473 4894 76964674 76964264 7.020000e-95 359.0
25 TraesCS2D01G316200 chr5A 73.214 336 63 21 1975 2294 45410972 45411296 6.070000e-16 97.1
26 TraesCS2D01G316200 chr4A 80.174 459 79 10 4456 4910 689099521 689099971 4.250000e-87 333.0
27 TraesCS2D01G316200 chr6B 72.566 452 88 25 1936 2369 693047839 693048272 1.680000e-21 115.0
28 TraesCS2D01G316200 chr6B 77.778 108 18 6 6716 6820 223433621 223433517 2.220000e-05 62.1
29 TraesCS2D01G316200 chr4D 77.778 108 18 6 6716 6820 439661900 439662004 2.220000e-05 62.1
30 TraesCS2D01G316200 chr4B 77.778 108 18 6 6716 6820 385556317 385556213 2.220000e-05 62.1
31 TraesCS2D01G316200 chr3B 77.778 108 18 6 6716 6820 217143368 217143264 2.220000e-05 62.1
32 TraesCS2D01G316200 chr1B 92.857 42 3 0 6716 6757 643592914 643592955 2.220000e-05 62.1
33 TraesCS2D01G316200 chr3D 96.970 33 1 0 6716 6748 482215417 482215449 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G316200 chr2D 405414860 405422214 7354 False 13583.000000 13583 100.000000 1 7355 1 chr2D.!!$F1 7354
1 TraesCS2D01G316200 chr2B 481048160 481054850 6690 False 5022.500000 8922 92.955000 518 7355 2 chr2B.!!$F3 6837
2 TraesCS2D01G316200 chr2A 543619598 543626721 7123 False 996.714286 1875 88.288286 515 7341 7 chr2A.!!$F2 6826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.042188 CTGCAACCACGACAACGAAG 60.042 55.000 0.00 0.00 42.66 3.79 F
227 228 0.108567 GAGCTTTGGGAGAGGACGAC 60.109 60.000 0.00 0.00 0.00 4.34 F
229 230 0.108567 GCTTTGGGAGAGGACGACTC 60.109 60.000 0.00 0.00 46.98 3.36 F
238 239 0.171455 GAGGACGACTCAGTGCGATT 59.829 55.000 4.01 0.00 45.85 3.34 F
1246 1270 0.245539 CTGTACCGTTCCACCGATGT 59.754 55.000 0.00 0.00 0.00 3.06 F
2882 3301 1.295746 GGTTCCGGTCCTGGAGAAC 59.704 63.158 15.36 15.36 39.72 3.01 F
2964 3383 0.996583 TTACCAGGAAAATCCCCGCT 59.003 50.000 0.00 0.00 37.19 5.52 F
4207 4904 1.375551 CCGGTGTTATCCCCTTTTCG 58.624 55.000 0.00 0.00 0.00 3.46 F
5249 5968 0.102663 GTAGCCTACTCTTGCCCGAC 59.897 60.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1477 1.134995 AGATCGCGATTGCTTGACTCA 60.135 47.619 24.55 0.00 39.65 3.41 R
1452 1478 1.565305 AGATCGCGATTGCTTGACTC 58.435 50.000 24.55 7.81 39.65 3.36 R
1878 1935 1.720852 GTCACATGCATTTTTCACGGC 59.279 47.619 0.00 0.00 0.00 5.68 R
2212 2619 1.748493 GAAAACTTCATGGCCGCCATA 59.252 47.619 24.66 9.61 43.15 2.74 R
2932 3351 1.596496 CTGGTAATTCCCCAGGGTCT 58.404 55.000 4.22 0.00 44.77 3.85 R
4839 5545 0.653636 GTTTGCGTCAAGGTTCGTGA 59.346 50.000 0.00 0.00 0.00 4.35 R
4859 5565 9.823647 CAGTGTATCATCTACTTAGACCATTTT 57.176 33.333 0.00 0.00 34.72 1.82 R
5733 6483 0.998928 AGCCATTGGGTACACATGGA 59.001 50.000 23.00 0.93 37.40 3.41 R
6974 7739 0.747255 CTGACAGGTCCTGATACCCG 59.253 60.000 26.18 4.48 40.71 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.809010 TGCAAGGTCGTCGACACA 59.191 55.556 25.64 14.93 33.68 3.72
18 19 1.365999 TGCAAGGTCGTCGACACAT 59.634 52.632 25.64 9.21 33.68 3.21
19 20 0.943835 TGCAAGGTCGTCGACACATG 60.944 55.000 25.64 19.99 33.68 3.21
20 21 1.626654 GCAAGGTCGTCGACACATGG 61.627 60.000 25.64 10.49 33.68 3.66
21 22 1.014044 CAAGGTCGTCGACACATGGG 61.014 60.000 25.64 0.00 33.68 4.00
22 23 2.125673 GGTCGTCGACACATGGGG 60.126 66.667 25.64 0.00 33.68 4.96
23 24 2.125673 GTCGTCGACACATGGGGG 60.126 66.667 20.28 0.00 32.09 5.40
24 25 2.283316 TCGTCGACACATGGGGGA 60.283 61.111 17.16 0.00 0.00 4.81
25 26 1.684391 TCGTCGACACATGGGGGAT 60.684 57.895 17.16 0.00 0.00 3.85
26 27 1.521457 CGTCGACACATGGGGGATG 60.521 63.158 17.16 0.00 38.15 3.51
27 28 1.904771 GTCGACACATGGGGGATGA 59.095 57.895 11.55 0.00 35.80 2.92
28 29 0.179073 GTCGACACATGGGGGATGAG 60.179 60.000 11.55 0.00 35.80 2.90
29 30 0.617535 TCGACACATGGGGGATGAGT 60.618 55.000 0.00 0.00 38.45 3.41
30 31 0.462581 CGACACATGGGGGATGAGTG 60.463 60.000 0.00 0.00 36.15 3.51
31 32 0.749454 GACACATGGGGGATGAGTGC 60.749 60.000 0.00 0.00 36.15 4.40
32 33 1.210204 ACACATGGGGGATGAGTGCT 61.210 55.000 0.00 0.00 34.87 4.40
33 34 0.750546 CACATGGGGGATGAGTGCTG 60.751 60.000 0.00 0.00 35.80 4.41
34 35 1.826921 CATGGGGGATGAGTGCTGC 60.827 63.158 0.00 0.00 33.31 5.25
35 36 2.311070 ATGGGGGATGAGTGCTGCA 61.311 57.895 0.00 0.00 0.00 4.41
36 37 1.866483 ATGGGGGATGAGTGCTGCAA 61.866 55.000 2.77 0.00 0.00 4.08
37 38 2.048603 GGGGGATGAGTGCTGCAAC 61.049 63.158 2.77 2.25 0.00 4.17
38 39 2.048603 GGGGATGAGTGCTGCAACC 61.049 63.158 2.77 3.35 0.00 3.77
39 40 1.303561 GGGATGAGTGCTGCAACCA 60.304 57.895 2.77 5.75 30.52 3.67
40 41 1.589716 GGGATGAGTGCTGCAACCAC 61.590 60.000 2.77 8.67 30.52 4.16
41 42 1.499056 GATGAGTGCTGCAACCACG 59.501 57.895 2.77 0.00 38.22 4.94
42 43 0.950555 GATGAGTGCTGCAACCACGA 60.951 55.000 2.77 3.83 38.22 4.35
43 44 1.230635 ATGAGTGCTGCAACCACGAC 61.231 55.000 2.77 9.61 38.22 4.34
44 45 1.887242 GAGTGCTGCAACCACGACA 60.887 57.895 2.77 0.00 38.22 4.35
45 46 1.436195 GAGTGCTGCAACCACGACAA 61.436 55.000 2.77 0.00 38.22 3.18
46 47 1.298339 GTGCTGCAACCACGACAAC 60.298 57.895 2.77 0.00 0.00 3.32
47 48 2.052237 GCTGCAACCACGACAACG 60.052 61.111 0.00 0.00 45.75 4.10
48 49 2.530497 GCTGCAACCACGACAACGA 61.530 57.895 0.00 0.00 42.66 3.85
49 50 2.010670 CTGCAACCACGACAACGAA 58.989 52.632 0.00 0.00 42.66 3.85
50 51 0.042188 CTGCAACCACGACAACGAAG 60.042 55.000 0.00 0.00 42.66 3.79
51 52 1.368850 GCAACCACGACAACGAAGC 60.369 57.895 0.00 0.00 42.66 3.86
52 53 1.772063 GCAACCACGACAACGAAGCT 61.772 55.000 0.00 0.00 42.66 3.74
53 54 1.493772 CAACCACGACAACGAAGCTA 58.506 50.000 0.00 0.00 42.66 3.32
54 55 1.191647 CAACCACGACAACGAAGCTAC 59.808 52.381 0.00 0.00 42.66 3.58
55 56 0.662374 ACCACGACAACGAAGCTACG 60.662 55.000 0.00 0.00 42.66 3.51
56 57 0.386352 CCACGACAACGAAGCTACGA 60.386 55.000 0.00 0.00 42.66 3.43
57 58 0.975544 CACGACAACGAAGCTACGAG 59.024 55.000 0.00 0.00 42.66 4.18
58 59 0.109873 ACGACAACGAAGCTACGAGG 60.110 55.000 0.00 0.00 42.66 4.63
59 60 0.797249 CGACAACGAAGCTACGAGGG 60.797 60.000 0.00 0.00 42.66 4.30
60 61 1.077089 GACAACGAAGCTACGAGGGC 61.077 60.000 0.00 0.00 37.03 5.19
61 62 1.080093 CAACGAAGCTACGAGGGCA 60.080 57.895 0.00 0.00 37.03 5.36
62 63 0.460284 CAACGAAGCTACGAGGGCAT 60.460 55.000 0.00 0.00 37.03 4.40
63 64 0.179108 AACGAAGCTACGAGGGCATC 60.179 55.000 0.00 0.00 37.03 3.91
64 65 1.320344 ACGAAGCTACGAGGGCATCA 61.320 55.000 0.00 0.00 37.03 3.07
65 66 0.179111 CGAAGCTACGAGGGCATCAA 60.179 55.000 0.00 0.00 35.09 2.57
66 67 1.291132 GAAGCTACGAGGGCATCAAC 58.709 55.000 0.00 0.00 0.00 3.18
67 68 0.460284 AAGCTACGAGGGCATCAACG 60.460 55.000 0.00 0.00 0.00 4.10
68 69 1.153628 GCTACGAGGGCATCAACGT 60.154 57.895 0.00 0.00 41.66 3.99
69 70 1.146358 GCTACGAGGGCATCAACGTC 61.146 60.000 0.00 0.00 39.59 4.34
71 72 2.274232 TACGAGGGCATCAACGTCGG 62.274 60.000 11.36 0.00 46.74 4.79
72 73 2.511600 GAGGGCATCAACGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
73 74 3.000819 AGGGCATCAACGTCGGGA 61.001 61.111 0.00 0.00 0.00 5.14
74 75 2.189521 GGGCATCAACGTCGGGAT 59.810 61.111 0.00 0.00 0.00 3.85
75 76 2.180204 GGGCATCAACGTCGGGATG 61.180 63.158 19.10 19.10 42.92 3.51
76 77 2.180204 GGCATCAACGTCGGGATGG 61.180 63.158 22.53 10.56 40.91 3.51
77 78 1.153449 GCATCAACGTCGGGATGGA 60.153 57.895 22.53 4.31 40.91 3.41
78 79 0.532862 GCATCAACGTCGGGATGGAT 60.533 55.000 22.53 6.09 40.91 3.41
79 80 1.220529 CATCAACGTCGGGATGGATG 58.779 55.000 16.84 9.27 37.77 3.51
80 81 0.830648 ATCAACGTCGGGATGGATGT 59.169 50.000 0.00 0.00 37.76 3.06
81 82 0.611200 TCAACGTCGGGATGGATGTT 59.389 50.000 0.00 0.00 44.71 2.71
82 83 3.153024 AACGTCGGGATGGATGTTG 57.847 52.632 0.00 0.00 42.83 3.33
83 84 1.024579 AACGTCGGGATGGATGTTGC 61.025 55.000 0.00 0.00 42.83 4.17
84 85 1.449423 CGTCGGGATGGATGTTGCA 60.449 57.895 0.00 0.00 0.00 4.08
85 86 1.024046 CGTCGGGATGGATGTTGCAA 61.024 55.000 0.00 0.00 0.00 4.08
86 87 0.451783 GTCGGGATGGATGTTGCAAC 59.548 55.000 22.83 22.83 0.00 4.17
87 88 0.679640 TCGGGATGGATGTTGCAACC 60.680 55.000 26.14 12.24 29.93 3.77
88 89 0.964860 CGGGATGGATGTTGCAACCA 60.965 55.000 26.14 17.67 40.43 3.67
90 91 1.137479 GGGATGGATGTTGCAACCATG 59.863 52.381 26.14 0.00 44.96 3.66
91 92 1.137479 GGATGGATGTTGCAACCATGG 59.863 52.381 26.14 11.19 44.96 3.66
92 93 1.826720 GATGGATGTTGCAACCATGGT 59.173 47.619 26.14 13.00 44.96 3.55
93 94 1.255882 TGGATGTTGCAACCATGGTC 58.744 50.000 26.14 15.11 31.41 4.02
94 95 0.532115 GGATGTTGCAACCATGGTCC 59.468 55.000 26.14 19.40 0.00 4.46
95 96 0.171007 GATGTTGCAACCATGGTCCG 59.829 55.000 26.14 13.88 0.00 4.79
96 97 0.251121 ATGTTGCAACCATGGTCCGA 60.251 50.000 26.14 9.58 0.00 4.55
97 98 1.169661 TGTTGCAACCATGGTCCGAC 61.170 55.000 26.14 20.70 0.00 4.79
98 99 1.963855 TTGCAACCATGGTCCGACG 60.964 57.895 20.07 5.87 0.00 5.12
99 100 3.124921 GCAACCATGGTCCGACGG 61.125 66.667 20.07 7.84 0.00 4.79
100 101 2.660206 CAACCATGGTCCGACGGA 59.340 61.111 20.07 13.88 0.00 4.69
101 102 1.447838 CAACCATGGTCCGACGGAG 60.448 63.158 20.07 7.75 29.39 4.63
108 109 3.827898 GTCCGACGGAGCTGGGAG 61.828 72.222 18.98 0.00 29.39 4.30
132 133 3.207669 GGCTGGCGGAGATGCAAG 61.208 66.667 0.00 0.00 39.02 4.01
134 135 3.570638 CTGGCGGAGATGCAAGCG 61.571 66.667 0.00 0.00 36.28 4.68
135 136 4.081185 TGGCGGAGATGCAAGCGA 62.081 61.111 0.00 0.00 36.28 4.93
136 137 3.567797 GGCGGAGATGCAAGCGAC 61.568 66.667 0.00 0.00 36.28 5.19
137 138 2.510238 GCGGAGATGCAAGCGACT 60.510 61.111 0.00 0.00 34.15 4.18
138 139 2.806856 GCGGAGATGCAAGCGACTG 61.807 63.158 0.00 0.00 34.15 3.51
139 140 1.446792 CGGAGATGCAAGCGACTGT 60.447 57.895 0.00 0.00 0.00 3.55
140 141 0.179137 CGGAGATGCAAGCGACTGTA 60.179 55.000 0.00 0.00 0.00 2.74
141 142 1.281899 GGAGATGCAAGCGACTGTAC 58.718 55.000 0.00 0.00 0.00 2.90
142 143 1.404181 GGAGATGCAAGCGACTGTACA 60.404 52.381 0.00 0.00 0.00 2.90
143 144 1.656095 GAGATGCAAGCGACTGTACAC 59.344 52.381 0.00 0.00 0.00 2.90
144 145 0.366871 GATGCAAGCGACTGTACACG 59.633 55.000 0.00 1.73 0.00 4.49
145 146 1.014044 ATGCAAGCGACTGTACACGG 61.014 55.000 7.84 0.00 0.00 4.94
146 147 2.380410 GCAAGCGACTGTACACGGG 61.380 63.158 7.84 0.00 0.00 5.28
147 148 2.048503 AAGCGACTGTACACGGGC 60.049 61.111 7.84 3.99 0.00 6.13
148 149 2.571216 AAGCGACTGTACACGGGCT 61.571 57.895 7.84 6.08 0.00 5.19
149 150 2.765250 AAGCGACTGTACACGGGCTG 62.765 60.000 9.74 0.00 0.00 4.85
150 151 2.809601 CGACTGTACACGGGCTGC 60.810 66.667 0.00 0.00 0.00 5.25
151 152 2.342279 GACTGTACACGGGCTGCA 59.658 61.111 0.50 0.00 0.00 4.41
152 153 2.027625 GACTGTACACGGGCTGCAC 61.028 63.158 0.50 0.00 0.00 4.57
153 154 2.742372 CTGTACACGGGCTGCACC 60.742 66.667 0.50 0.00 37.93 5.01
168 169 2.284405 ACCCGACCGGTGATCCTT 60.284 61.111 14.63 0.00 46.09 3.36
169 170 1.916777 ACCCGACCGGTGATCCTTT 60.917 57.895 14.63 0.00 46.09 3.11
170 171 1.298667 CCCGACCGGTGATCCTTTT 59.701 57.895 14.63 0.00 0.00 2.27
171 172 0.322187 CCCGACCGGTGATCCTTTTT 60.322 55.000 14.63 0.00 0.00 1.94
188 189 2.065899 TTTTTCCCGGCATCATAGGG 57.934 50.000 0.00 0.00 46.40 3.53
189 190 0.923358 TTTTCCCGGCATCATAGGGT 59.077 50.000 0.00 0.00 45.27 4.34
190 191 0.182537 TTTCCCGGCATCATAGGGTG 59.817 55.000 0.00 0.00 45.27 4.61
191 192 2.281761 CCCGGCATCATAGGGTGC 60.282 66.667 3.47 3.47 40.27 5.01
192 193 2.666190 CCGGCATCATAGGGTGCG 60.666 66.667 6.53 2.15 42.15 5.34
193 194 3.349006 CGGCATCATAGGGTGCGC 61.349 66.667 6.53 0.00 42.15 6.09
194 195 2.980233 GGCATCATAGGGTGCGCC 60.980 66.667 8.12 8.12 42.15 6.53
223 224 3.713650 CCGAGCTTTGGGAGAGGA 58.286 61.111 0.00 0.00 0.00 3.71
224 225 1.219393 CCGAGCTTTGGGAGAGGAC 59.781 63.158 0.00 0.00 0.00 3.85
225 226 1.153745 CGAGCTTTGGGAGAGGACG 60.154 63.158 0.00 0.00 0.00 4.79
226 227 1.595993 CGAGCTTTGGGAGAGGACGA 61.596 60.000 0.00 0.00 0.00 4.20
227 228 0.108567 GAGCTTTGGGAGAGGACGAC 60.109 60.000 0.00 0.00 0.00 4.34
228 229 0.543174 AGCTTTGGGAGAGGACGACT 60.543 55.000 0.00 0.00 0.00 4.18
229 230 0.108567 GCTTTGGGAGAGGACGACTC 60.109 60.000 0.00 0.00 46.98 3.36
236 237 3.264947 GAGGACGACTCAGTGCGA 58.735 61.111 4.01 0.00 45.85 5.10
237 238 1.803943 GAGGACGACTCAGTGCGAT 59.196 57.895 4.01 0.00 45.85 4.58
238 239 0.171455 GAGGACGACTCAGTGCGATT 59.829 55.000 4.01 0.00 45.85 3.34
239 240 0.603569 AGGACGACTCAGTGCGATTT 59.396 50.000 4.01 0.00 37.54 2.17
240 241 1.816835 AGGACGACTCAGTGCGATTTA 59.183 47.619 4.01 0.00 37.54 1.40
241 242 2.427453 AGGACGACTCAGTGCGATTTAT 59.573 45.455 4.01 0.00 37.54 1.40
242 243 2.535984 GGACGACTCAGTGCGATTTATG 59.464 50.000 4.01 0.00 0.00 1.90
243 244 3.435566 GACGACTCAGTGCGATTTATGA 58.564 45.455 4.01 0.00 0.00 2.15
244 245 3.439293 ACGACTCAGTGCGATTTATGAG 58.561 45.455 4.01 0.00 43.81 2.90
245 246 3.128764 ACGACTCAGTGCGATTTATGAGA 59.871 43.478 7.97 0.00 41.35 3.27
246 247 4.202060 ACGACTCAGTGCGATTTATGAGAT 60.202 41.667 7.97 0.00 41.35 2.75
247 248 4.742167 CGACTCAGTGCGATTTATGAGATT 59.258 41.667 7.97 0.00 41.35 2.40
248 249 5.233050 CGACTCAGTGCGATTTATGAGATTT 59.767 40.000 7.97 0.00 41.35 2.17
249 250 6.561166 CGACTCAGTGCGATTTATGAGATTTC 60.561 42.308 7.97 0.00 41.35 2.17
250 251 6.108687 ACTCAGTGCGATTTATGAGATTTCA 58.891 36.000 7.97 0.00 41.35 2.69
251 252 6.765036 ACTCAGTGCGATTTATGAGATTTCAT 59.235 34.615 7.97 3.95 45.77 2.57
252 253 7.042187 ACTCAGTGCGATTTATGAGATTTCATC 60.042 37.037 1.29 0.00 42.97 2.92
253 254 6.988580 TCAGTGCGATTTATGAGATTTCATCT 59.011 34.615 1.29 0.00 42.97 2.90
254 255 8.143835 TCAGTGCGATTTATGAGATTTCATCTA 58.856 33.333 1.29 0.00 42.97 1.98
255 256 8.768019 CAGTGCGATTTATGAGATTTCATCTAA 58.232 33.333 1.29 0.00 42.97 2.10
256 257 9.499479 AGTGCGATTTATGAGATTTCATCTAAT 57.501 29.630 1.29 4.44 42.97 1.73
257 258 9.539139 GTGCGATTTATGAGATTTCATCTAATG 57.461 33.333 1.29 2.23 42.97 1.90
258 259 9.492973 TGCGATTTATGAGATTTCATCTAATGA 57.507 29.630 1.29 0.00 42.97 2.57
259 260 9.752274 GCGATTTATGAGATTTCATCTAATGAC 57.248 33.333 1.29 0.00 42.97 3.06
264 265 7.997773 ATGAGATTTCATCTAATGACCATGG 57.002 36.000 11.19 11.19 39.94 3.66
265 266 6.301486 TGAGATTTCATCTAATGACCATGGG 58.699 40.000 18.09 0.00 40.38 4.00
266 267 5.075493 AGATTTCATCTAATGACCATGGGC 58.925 41.667 18.09 15.32 39.39 5.36
267 268 2.549064 TCATCTAATGACCATGGGCG 57.451 50.000 18.09 0.00 33.59 6.13
268 269 0.877071 CATCTAATGACCATGGGCGC 59.123 55.000 18.09 0.00 0.00 6.53
269 270 0.767375 ATCTAATGACCATGGGCGCT 59.233 50.000 18.09 6.58 0.00 5.92
270 271 0.546122 TCTAATGACCATGGGCGCTT 59.454 50.000 18.09 13.44 0.00 4.68
271 272 1.064758 TCTAATGACCATGGGCGCTTT 60.065 47.619 18.09 10.95 0.00 3.51
272 273 2.171659 TCTAATGACCATGGGCGCTTTA 59.828 45.455 18.09 11.53 0.00 1.85
273 274 1.846007 AATGACCATGGGCGCTTTAA 58.154 45.000 18.09 0.00 0.00 1.52
274 275 2.071778 ATGACCATGGGCGCTTTAAT 57.928 45.000 18.09 0.00 0.00 1.40
275 276 1.388547 TGACCATGGGCGCTTTAATC 58.611 50.000 18.09 1.17 0.00 1.75
276 277 1.064758 TGACCATGGGCGCTTTAATCT 60.065 47.619 18.09 0.00 0.00 2.40
277 278 1.334869 GACCATGGGCGCTTTAATCTG 59.665 52.381 18.09 0.00 0.00 2.90
278 279 1.064758 ACCATGGGCGCTTTAATCTGA 60.065 47.619 18.09 0.00 0.00 3.27
279 280 2.233271 CCATGGGCGCTTTAATCTGAT 58.767 47.619 7.64 0.00 0.00 2.90
280 281 2.030540 CCATGGGCGCTTTAATCTGATG 60.031 50.000 7.64 0.00 0.00 3.07
281 282 1.679139 TGGGCGCTTTAATCTGATGG 58.321 50.000 7.64 0.00 0.00 3.51
282 283 1.064758 TGGGCGCTTTAATCTGATGGT 60.065 47.619 7.64 0.00 0.00 3.55
283 284 1.334869 GGGCGCTTTAATCTGATGGTG 59.665 52.381 7.64 0.00 0.00 4.17
284 285 1.334869 GGCGCTTTAATCTGATGGTGG 59.665 52.381 7.64 0.00 0.00 4.61
285 286 2.288666 GCGCTTTAATCTGATGGTGGA 58.711 47.619 0.00 0.00 0.00 4.02
286 287 2.682856 GCGCTTTAATCTGATGGTGGAA 59.317 45.455 0.00 0.00 0.00 3.53
287 288 3.128589 GCGCTTTAATCTGATGGTGGAAA 59.871 43.478 0.00 0.00 0.00 3.13
288 289 4.202050 GCGCTTTAATCTGATGGTGGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
289 290 5.276270 CGCTTTAATCTGATGGTGGAAATG 58.724 41.667 0.00 0.00 0.00 2.32
290 291 5.066375 CGCTTTAATCTGATGGTGGAAATGA 59.934 40.000 0.00 0.00 0.00 2.57
291 292 6.238842 CGCTTTAATCTGATGGTGGAAATGAT 60.239 38.462 0.00 0.00 0.00 2.45
292 293 6.921857 GCTTTAATCTGATGGTGGAAATGATG 59.078 38.462 0.00 0.00 0.00 3.07
293 294 7.201848 GCTTTAATCTGATGGTGGAAATGATGA 60.202 37.037 0.00 0.00 0.00 2.92
294 295 7.572523 TTAATCTGATGGTGGAAATGATGAC 57.427 36.000 0.00 0.00 0.00 3.06
295 296 3.889815 TCTGATGGTGGAAATGATGACC 58.110 45.455 0.00 0.00 0.00 4.02
296 297 2.615447 CTGATGGTGGAAATGATGACCG 59.385 50.000 0.00 0.00 0.00 4.79
297 298 2.026356 TGATGGTGGAAATGATGACCGT 60.026 45.455 0.00 0.00 0.00 4.83
298 299 2.577606 TGGTGGAAATGATGACCGTT 57.422 45.000 0.00 0.00 0.00 4.44
299 300 2.870175 TGGTGGAAATGATGACCGTTT 58.130 42.857 0.00 0.00 36.73 3.60
300 301 2.556189 TGGTGGAAATGATGACCGTTTG 59.444 45.455 0.00 0.00 34.32 2.93
301 302 2.094752 GGTGGAAATGATGACCGTTTGG 60.095 50.000 0.00 0.00 42.84 3.28
302 303 2.094752 GTGGAAATGATGACCGTTTGGG 60.095 50.000 0.00 0.00 40.75 4.12
303 304 2.224892 TGGAAATGATGACCGTTTGGGA 60.225 45.455 0.00 0.00 40.75 4.37
304 305 2.423538 GGAAATGATGACCGTTTGGGAG 59.576 50.000 0.00 0.00 40.75 4.30
305 306 1.463674 AATGATGACCGTTTGGGAGC 58.536 50.000 0.00 0.00 40.75 4.70
306 307 0.620556 ATGATGACCGTTTGGGAGCT 59.379 50.000 0.00 0.00 40.75 4.09
307 308 0.321564 TGATGACCGTTTGGGAGCTG 60.322 55.000 0.00 0.00 40.75 4.24
308 309 1.002134 ATGACCGTTTGGGAGCTGG 60.002 57.895 0.00 0.00 40.75 4.85
309 310 1.779061 ATGACCGTTTGGGAGCTGGT 61.779 55.000 0.00 0.00 40.75 4.00
310 311 1.966451 GACCGTTTGGGAGCTGGTG 60.966 63.158 0.00 0.00 40.75 4.17
311 312 2.672996 CCGTTTGGGAGCTGGTGG 60.673 66.667 0.00 0.00 38.47 4.61
312 313 3.365265 CGTTTGGGAGCTGGTGGC 61.365 66.667 0.00 0.00 42.19 5.01
354 355 3.885724 CCCCCAAACGAAAATGCTATT 57.114 42.857 0.00 0.00 0.00 1.73
355 356 4.200838 CCCCCAAACGAAAATGCTATTT 57.799 40.909 0.00 0.00 0.00 1.40
356 357 4.180817 CCCCCAAACGAAAATGCTATTTC 58.819 43.478 0.00 5.13 36.24 2.17
357 358 4.081697 CCCCCAAACGAAAATGCTATTTCT 60.082 41.667 11.31 0.00 37.20 2.52
358 359 5.478407 CCCCAAACGAAAATGCTATTTCTT 58.522 37.500 11.31 1.95 37.20 2.52
359 360 6.350612 CCCCCAAACGAAAATGCTATTTCTTA 60.351 38.462 11.31 0.00 37.20 2.10
360 361 7.264947 CCCCAAACGAAAATGCTATTTCTTAT 58.735 34.615 11.31 0.00 37.20 1.73
361 362 8.410141 CCCCAAACGAAAATGCTATTTCTTATA 58.590 33.333 11.31 0.00 37.20 0.98
362 363 9.233232 CCCAAACGAAAATGCTATTTCTTATAC 57.767 33.333 11.31 0.00 37.20 1.47
363 364 9.781834 CCAAACGAAAATGCTATTTCTTATACA 57.218 29.630 11.31 0.00 37.20 2.29
387 388 8.173130 ACATAATAAAGCGTTGTACAGTAAAGC 58.827 33.333 0.00 0.00 33.61 3.51
388 389 6.548441 AATAAAGCGTTGTACAGTAAAGCA 57.452 33.333 6.70 0.00 35.44 3.91
389 390 3.872560 AAGCGTTGTACAGTAAAGCAC 57.127 42.857 6.70 0.00 35.44 4.40
390 391 1.790623 AGCGTTGTACAGTAAAGCACG 59.209 47.619 9.12 9.12 35.44 5.34
391 392 1.523934 GCGTTGTACAGTAAAGCACGT 59.476 47.619 13.65 0.00 33.62 4.49
392 393 2.725723 GCGTTGTACAGTAAAGCACGTA 59.274 45.455 13.65 0.00 33.62 3.57
393 394 3.420927 GCGTTGTACAGTAAAGCACGTAC 60.421 47.826 13.65 0.00 37.51 3.67
394 395 3.976942 CGTTGTACAGTAAAGCACGTACT 59.023 43.478 5.96 0.00 37.69 2.73
395 396 5.146460 CGTTGTACAGTAAAGCACGTACTA 58.854 41.667 5.96 0.00 37.69 1.82
396 397 5.282310 CGTTGTACAGTAAAGCACGTACTAG 59.718 44.000 5.96 0.00 37.69 2.57
397 398 5.947228 TGTACAGTAAAGCACGTACTAGT 57.053 39.130 0.00 0.00 37.69 2.57
398 399 5.692814 TGTACAGTAAAGCACGTACTAGTG 58.307 41.667 5.39 0.00 44.47 2.74
399 400 4.843220 ACAGTAAAGCACGTACTAGTGT 57.157 40.909 5.39 0.00 43.61 3.55
400 401 4.543692 ACAGTAAAGCACGTACTAGTGTG 58.456 43.478 5.39 7.32 43.61 3.82
401 402 4.037208 ACAGTAAAGCACGTACTAGTGTGT 59.963 41.667 5.39 0.34 43.61 3.72
402 403 4.980434 CAGTAAAGCACGTACTAGTGTGTT 59.020 41.667 5.39 0.99 43.61 3.32
403 404 5.116680 CAGTAAAGCACGTACTAGTGTGTTC 59.883 44.000 5.39 0.00 43.61 3.18
404 405 4.317671 AAAGCACGTACTAGTGTGTTCT 57.682 40.909 5.39 0.60 43.61 3.01
405 406 3.284323 AGCACGTACTAGTGTGTTCTG 57.716 47.619 5.39 0.00 43.61 3.02
406 407 2.882761 AGCACGTACTAGTGTGTTCTGA 59.117 45.455 5.39 0.00 43.61 3.27
407 408 3.506455 AGCACGTACTAGTGTGTTCTGAT 59.494 43.478 5.39 0.00 43.61 2.90
408 409 3.852536 GCACGTACTAGTGTGTTCTGATC 59.147 47.826 5.39 0.00 43.61 2.92
409 410 4.379603 GCACGTACTAGTGTGTTCTGATCT 60.380 45.833 5.39 0.00 43.61 2.75
410 411 5.089411 CACGTACTAGTGTGTTCTGATCTG 58.911 45.833 5.39 0.00 37.35 2.90
411 412 4.760715 ACGTACTAGTGTGTTCTGATCTGT 59.239 41.667 5.39 0.00 0.00 3.41
412 413 5.936372 ACGTACTAGTGTGTTCTGATCTGTA 59.064 40.000 5.39 0.00 0.00 2.74
413 414 6.429078 ACGTACTAGTGTGTTCTGATCTGTAA 59.571 38.462 5.39 0.00 0.00 2.41
414 415 7.120873 ACGTACTAGTGTGTTCTGATCTGTAAT 59.879 37.037 5.39 0.00 0.00 1.89
415 416 7.968956 CGTACTAGTGTGTTCTGATCTGTAATT 59.031 37.037 5.39 0.00 0.00 1.40
416 417 9.077674 GTACTAGTGTGTTCTGATCTGTAATTG 57.922 37.037 5.39 0.00 0.00 2.32
417 418 5.869753 AGTGTGTTCTGATCTGTAATTGC 57.130 39.130 0.00 0.00 0.00 3.56
418 419 5.555017 AGTGTGTTCTGATCTGTAATTGCT 58.445 37.500 0.00 0.00 0.00 3.91
419 420 6.000219 AGTGTGTTCTGATCTGTAATTGCTT 59.000 36.000 0.00 0.00 0.00 3.91
420 421 6.148480 AGTGTGTTCTGATCTGTAATTGCTTC 59.852 38.462 0.00 0.00 0.00 3.86
421 422 5.412594 TGTGTTCTGATCTGTAATTGCTTCC 59.587 40.000 0.00 0.00 0.00 3.46
422 423 4.943705 TGTTCTGATCTGTAATTGCTTCCC 59.056 41.667 0.00 0.00 0.00 3.97
423 424 5.189180 GTTCTGATCTGTAATTGCTTCCCT 58.811 41.667 0.00 0.00 0.00 4.20
424 425 6.070251 TGTTCTGATCTGTAATTGCTTCCCTA 60.070 38.462 0.00 0.00 0.00 3.53
425 426 6.560003 TCTGATCTGTAATTGCTTCCCTAA 57.440 37.500 0.00 0.00 0.00 2.69
426 427 7.141758 TCTGATCTGTAATTGCTTCCCTAAT 57.858 36.000 0.00 0.00 0.00 1.73
427 428 7.577303 TCTGATCTGTAATTGCTTCCCTAATT 58.423 34.615 0.00 0.00 0.00 1.40
428 429 8.055181 TCTGATCTGTAATTGCTTCCCTAATTT 58.945 33.333 0.00 0.00 0.00 1.82
429 430 8.593945 TGATCTGTAATTGCTTCCCTAATTTT 57.406 30.769 0.00 0.00 0.00 1.82
430 431 9.693739 TGATCTGTAATTGCTTCCCTAATTTTA 57.306 29.630 0.00 0.00 0.00 1.52
432 433 7.996385 TCTGTAATTGCTTCCCTAATTTTAGC 58.004 34.615 0.00 0.00 0.00 3.09
433 434 7.834181 TCTGTAATTGCTTCCCTAATTTTAGCT 59.166 33.333 0.00 0.00 33.15 3.32
434 435 9.120538 CTGTAATTGCTTCCCTAATTTTAGCTA 57.879 33.333 0.00 0.00 33.15 3.32
435 436 9.469097 TGTAATTGCTTCCCTAATTTTAGCTAA 57.531 29.630 0.86 0.86 33.15 3.09
436 437 9.731819 GTAATTGCTTCCCTAATTTTAGCTAAC 57.268 33.333 5.45 0.00 33.15 2.34
437 438 8.595362 AATTGCTTCCCTAATTTTAGCTAACT 57.405 30.769 5.45 0.00 33.15 2.24
438 439 7.391148 TTGCTTCCCTAATTTTAGCTAACTG 57.609 36.000 5.45 0.00 33.15 3.16
439 440 5.357032 TGCTTCCCTAATTTTAGCTAACTGC 59.643 40.000 5.45 0.15 43.29 4.40
440 441 5.221067 GCTTCCCTAATTTTAGCTAACTGCC 60.221 44.000 5.45 0.00 44.23 4.85
441 442 5.444744 TCCCTAATTTTAGCTAACTGCCA 57.555 39.130 5.45 0.00 44.23 4.92
442 443 6.013554 TCCCTAATTTTAGCTAACTGCCAT 57.986 37.500 5.45 0.00 44.23 4.40
443 444 7.144234 TCCCTAATTTTAGCTAACTGCCATA 57.856 36.000 5.45 0.00 44.23 2.74
444 445 7.579105 TCCCTAATTTTAGCTAACTGCCATAA 58.421 34.615 5.45 0.00 44.23 1.90
445 446 8.056400 TCCCTAATTTTAGCTAACTGCCATAAA 58.944 33.333 5.45 0.00 44.23 1.40
446 447 8.691797 CCCTAATTTTAGCTAACTGCCATAAAA 58.308 33.333 5.45 0.00 44.23 1.52
456 457 9.110502 AGCTAACTGCCATAAAATAAACTACTC 57.889 33.333 0.00 0.00 44.23 2.59
457 458 8.343366 GCTAACTGCCATAAAATAAACTACTCC 58.657 37.037 0.00 0.00 35.15 3.85
458 459 6.920569 ACTGCCATAAAATAAACTACTCCG 57.079 37.500 0.00 0.00 0.00 4.63
459 460 6.646267 ACTGCCATAAAATAAACTACTCCGA 58.354 36.000 0.00 0.00 0.00 4.55
460 461 7.280356 ACTGCCATAAAATAAACTACTCCGAT 58.720 34.615 0.00 0.00 0.00 4.18
461 462 7.441458 ACTGCCATAAAATAAACTACTCCGATC 59.559 37.037 0.00 0.00 0.00 3.69
462 463 7.506114 TGCCATAAAATAAACTACTCCGATCT 58.494 34.615 0.00 0.00 0.00 2.75
463 464 7.656137 TGCCATAAAATAAACTACTCCGATCTC 59.344 37.037 0.00 0.00 0.00 2.75
464 465 7.873505 GCCATAAAATAAACTACTCCGATCTCT 59.126 37.037 0.00 0.00 0.00 3.10
465 466 9.413048 CCATAAAATAAACTACTCCGATCTCTC 57.587 37.037 0.00 0.00 0.00 3.20
466 467 9.413048 CATAAAATAAACTACTCCGATCTCTCC 57.587 37.037 0.00 0.00 0.00 3.71
467 468 7.663043 AAAATAAACTACTCCGATCTCTCCT 57.337 36.000 0.00 0.00 0.00 3.69
468 469 7.663043 AAATAAACTACTCCGATCTCTCCTT 57.337 36.000 0.00 0.00 0.00 3.36
469 470 6.887626 ATAAACTACTCCGATCTCTCCTTC 57.112 41.667 0.00 0.00 0.00 3.46
470 471 4.513406 AACTACTCCGATCTCTCCTTCT 57.487 45.455 0.00 0.00 0.00 2.85
471 472 4.081322 ACTACTCCGATCTCTCCTTCTC 57.919 50.000 0.00 0.00 0.00 2.87
472 473 3.456644 ACTACTCCGATCTCTCCTTCTCA 59.543 47.826 0.00 0.00 0.00 3.27
473 474 3.593442 ACTCCGATCTCTCCTTCTCAT 57.407 47.619 0.00 0.00 0.00 2.90
474 475 4.715534 ACTCCGATCTCTCCTTCTCATA 57.284 45.455 0.00 0.00 0.00 2.15
475 476 5.055265 ACTCCGATCTCTCCTTCTCATAA 57.945 43.478 0.00 0.00 0.00 1.90
476 477 5.640147 ACTCCGATCTCTCCTTCTCATAAT 58.360 41.667 0.00 0.00 0.00 1.28
477 478 6.785076 ACTCCGATCTCTCCTTCTCATAATA 58.215 40.000 0.00 0.00 0.00 0.98
478 479 7.410174 ACTCCGATCTCTCCTTCTCATAATAT 58.590 38.462 0.00 0.00 0.00 1.28
479 480 8.553153 ACTCCGATCTCTCCTTCTCATAATATA 58.447 37.037 0.00 0.00 0.00 0.86
480 481 9.402320 CTCCGATCTCTCCTTCTCATAATATAA 57.598 37.037 0.00 0.00 0.00 0.98
481 482 9.755122 TCCGATCTCTCCTTCTCATAATATAAA 57.245 33.333 0.00 0.00 0.00 1.40
628 637 1.600916 GGTGGGCGTTGAGAAGCTT 60.601 57.895 0.00 0.00 0.00 3.74
851 864 0.323633 AAGCTGTATGCATGGCCACA 60.324 50.000 8.16 1.91 45.94 4.17
927 942 1.225855 TCTCGCTGCATTGTCGTTTT 58.774 45.000 0.00 0.00 0.00 2.43
992 1007 3.864789 ACCCTGCAGAAGAAAGAGAAA 57.135 42.857 17.39 0.00 0.00 2.52
993 1008 4.170468 ACCCTGCAGAAGAAAGAGAAAA 57.830 40.909 17.39 0.00 0.00 2.29
994 1009 4.536765 ACCCTGCAGAAGAAAGAGAAAAA 58.463 39.130 17.39 0.00 0.00 1.94
995 1010 5.143369 ACCCTGCAGAAGAAAGAGAAAAAT 58.857 37.500 17.39 0.00 0.00 1.82
996 1011 6.306987 ACCCTGCAGAAGAAAGAGAAAAATA 58.693 36.000 17.39 0.00 0.00 1.40
997 1012 6.777580 ACCCTGCAGAAGAAAGAGAAAAATAA 59.222 34.615 17.39 0.00 0.00 1.40
998 1013 7.287696 ACCCTGCAGAAGAAAGAGAAAAATAAA 59.712 33.333 17.39 0.00 0.00 1.40
1026 1041 2.109739 TGCCACAAAGCAACGTCGT 61.110 52.632 0.00 0.00 40.56 4.34
1027 1042 1.368850 GCCACAAAGCAACGTCGTC 60.369 57.895 0.00 0.00 0.00 4.20
1028 1043 1.083657 CCACAAAGCAACGTCGTCG 60.084 57.895 0.00 0.00 43.34 5.12
1051 1071 6.252869 TCGAAGATATAGCTTCAACGTTGAAC 59.747 38.462 33.86 28.17 43.44 3.18
1060 1084 4.729458 GCTTCAACGTTGAACAAGTTAGCA 60.729 41.667 33.86 14.38 41.88 3.49
1070 1094 4.816385 TGAACAAGTTAGCAGACTCCTTTG 59.184 41.667 0.00 0.00 0.00 2.77
1153 1177 1.370051 GTTTCTCGGCAACAACGGC 60.370 57.895 0.00 0.00 0.00 5.68
1179 1203 6.536582 ACACATGTATTTCTGTATCAGCTCAC 59.463 38.462 0.00 0.00 0.00 3.51
1239 1263 1.369692 CACCAGCTGTACCGTTCCA 59.630 57.895 13.81 0.00 0.00 3.53
1246 1270 0.245539 CTGTACCGTTCCACCGATGT 59.754 55.000 0.00 0.00 0.00 3.06
1286 1310 5.575606 CACGGTATGTTCGTATGTTTTCTCT 59.424 40.000 0.00 0.00 38.94 3.10
1336 1360 3.441572 AGCTAGCATTTGTCATTCACACC 59.558 43.478 18.83 0.00 33.41 4.16
1337 1361 3.441572 GCTAGCATTTGTCATTCACACCT 59.558 43.478 10.63 0.00 33.41 4.00
1338 1362 4.082571 GCTAGCATTTGTCATTCACACCTT 60.083 41.667 10.63 0.00 33.41 3.50
1339 1363 4.942761 AGCATTTGTCATTCACACCTTT 57.057 36.364 0.00 0.00 33.41 3.11
1346 1372 7.593875 TTTGTCATTCACACCTTTTCTTTTG 57.406 32.000 0.00 0.00 33.41 2.44
1367 1393 9.450807 CTTTTGTAAACATGTTGTTCTTAGGAG 57.549 33.333 12.82 0.00 40.14 3.69
1380 1406 3.711863 TCTTAGGAGCCCATGCAAATTT 58.288 40.909 0.00 0.00 41.13 1.82
1381 1407 4.865905 TCTTAGGAGCCCATGCAAATTTA 58.134 39.130 0.00 0.00 41.13 1.40
1382 1408 5.457686 TCTTAGGAGCCCATGCAAATTTAT 58.542 37.500 0.00 0.00 41.13 1.40
1383 1409 5.898972 TCTTAGGAGCCCATGCAAATTTATT 59.101 36.000 0.00 0.00 41.13 1.40
1384 1410 4.677673 AGGAGCCCATGCAAATTTATTC 57.322 40.909 0.00 0.00 41.13 1.75
1385 1411 4.292643 AGGAGCCCATGCAAATTTATTCT 58.707 39.130 0.00 0.00 41.13 2.40
1386 1412 4.718276 AGGAGCCCATGCAAATTTATTCTT 59.282 37.500 0.00 0.00 41.13 2.52
1387 1413 5.898972 AGGAGCCCATGCAAATTTATTCTTA 59.101 36.000 0.00 0.00 41.13 2.10
1388 1414 6.556116 AGGAGCCCATGCAAATTTATTCTTAT 59.444 34.615 0.00 0.00 41.13 1.73
1389 1415 7.071572 AGGAGCCCATGCAAATTTATTCTTATT 59.928 33.333 0.00 0.00 41.13 1.40
1390 1416 7.716560 GGAGCCCATGCAAATTTATTCTTATTT 59.283 33.333 0.00 0.00 41.13 1.40
1391 1417 9.112725 GAGCCCATGCAAATTTATTCTTATTTT 57.887 29.630 0.00 0.00 41.13 1.82
1414 1440 8.785329 TTTATATCTGCTGTTAACATGACACA 57.215 30.769 9.13 2.47 0.00 3.72
1415 1441 8.785329 TTATATCTGCTGTTAACATGACACAA 57.215 30.769 9.13 0.00 0.00 3.33
1416 1442 7.686438 ATATCTGCTGTTAACATGACACAAA 57.314 32.000 9.13 0.00 0.00 2.83
1417 1443 6.579666 ATCTGCTGTTAACATGACACAAAT 57.420 33.333 9.13 0.00 0.00 2.32
1418 1444 5.761003 TCTGCTGTTAACATGACACAAATG 58.239 37.500 9.13 0.00 0.00 2.32
1419 1445 5.530543 TCTGCTGTTAACATGACACAAATGA 59.469 36.000 9.13 0.00 0.00 2.57
1420 1446 6.207221 TCTGCTGTTAACATGACACAAATGAT 59.793 34.615 9.13 0.00 0.00 2.45
1421 1447 7.390162 TCTGCTGTTAACATGACACAAATGATA 59.610 33.333 9.13 0.00 0.00 2.15
1422 1448 8.054152 TGCTGTTAACATGACACAAATGATAT 57.946 30.769 9.13 0.00 0.00 1.63
1423 1449 8.183536 TGCTGTTAACATGACACAAATGATATC 58.816 33.333 9.13 0.00 0.00 1.63
1424 1450 7.645340 GCTGTTAACATGACACAAATGATATCC 59.355 37.037 9.13 0.00 0.00 2.59
1425 1451 8.806429 TGTTAACATGACACAAATGATATCCT 57.194 30.769 3.59 0.00 0.00 3.24
1426 1452 8.892723 TGTTAACATGACACAAATGATATCCTC 58.107 33.333 3.59 0.00 0.00 3.71
1427 1453 8.892723 GTTAACATGACACAAATGATATCCTCA 58.107 33.333 0.00 0.00 38.53 3.86
1428 1454 7.943079 AACATGACACAAATGATATCCTCAA 57.057 32.000 0.00 0.00 37.44 3.02
1429 1455 7.943079 ACATGACACAAATGATATCCTCAAA 57.057 32.000 0.00 0.00 37.44 2.69
1430 1456 8.352137 ACATGACACAAATGATATCCTCAAAA 57.648 30.769 0.00 0.00 37.44 2.44
1431 1457 8.805175 ACATGACACAAATGATATCCTCAAAAA 58.195 29.630 0.00 0.00 37.44 1.94
1506 1532 7.861629 TGAATTAGGTGAACTGGATTATCACT 58.138 34.615 5.27 0.00 42.36 3.41
1507 1533 8.328758 TGAATTAGGTGAACTGGATTATCACTT 58.671 33.333 5.27 0.70 42.36 3.16
1774 1831 5.411361 GCCCTATTTGAATGAAACCAAAACC 59.589 40.000 0.00 0.00 36.10 3.27
1775 1832 6.529220 CCCTATTTGAATGAAACCAAAACCA 58.471 36.000 0.00 0.00 36.10 3.67
1878 1935 6.791303 ACGGGCACTACACATATTTTAATTG 58.209 36.000 0.00 0.00 0.00 2.32
1918 2295 3.798202 ACTAGAGGCTAAAATCCGCTTG 58.202 45.455 0.00 0.00 35.37 4.01
2108 2486 4.024048 GTGGAGTTGTTAGGTGTGTGATTG 60.024 45.833 0.00 0.00 0.00 2.67
2212 2619 6.457392 CGTGAAATTGCTGCTATAACACTCAT 60.457 38.462 20.51 0.00 0.00 2.90
2840 3259 5.402398 GTCATTCCATAAACTTTCACCTGC 58.598 41.667 0.00 0.00 0.00 4.85
2845 3264 4.892934 TCCATAAACTTTCACCTGCTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
2882 3301 1.295746 GGTTCCGGTCCTGGAGAAC 59.704 63.158 15.36 15.36 39.72 3.01
2932 3351 4.144297 ACAAAGAGGCTGCAATTAGTTCA 58.856 39.130 0.50 0.00 0.00 3.18
2964 3383 0.996583 TTACCAGGAAAATCCCCGCT 59.003 50.000 0.00 0.00 37.19 5.52
3329 3760 3.023119 TGTGGTTGACAAACTTGCAGAT 58.977 40.909 4.57 0.00 36.48 2.90
3454 3885 6.669631 CCCTAATCCACAAGGTTAGGTTAAT 58.330 40.000 10.15 0.00 41.79 1.40
3499 4190 6.072893 TCCCTATTTGTCTTTTCGTTAAGTGC 60.073 38.462 0.00 0.00 0.00 4.40
3531 4223 2.419673 TGCGTCAAGTATGCATCTTTGG 59.580 45.455 17.93 8.31 45.29 3.28
3555 4248 7.394923 TGGTTTGTAGGAAAAGTGAGAAAAAGA 59.605 33.333 0.00 0.00 0.00 2.52
3627 4320 4.438744 GGTTCAATGAATGGGTCGAATGAC 60.439 45.833 0.00 0.00 44.72 3.06
3883 4580 6.680148 ATTATGCCACTAAAAACCTTGGTT 57.320 33.333 0.00 0.00 0.00 3.67
4042 4739 7.892445 GCATCATTGAATGAAAAATTGATGC 57.108 32.000 12.36 16.30 45.55 3.91
4100 4797 7.440255 CCAAATAGATCCTCAATGAAAATTGCC 59.560 37.037 0.00 0.00 0.00 4.52
4207 4904 1.375551 CCGGTGTTATCCCCTTTTCG 58.624 55.000 0.00 0.00 0.00 3.46
4212 4909 4.614306 CGGTGTTATCCCCTTTTCGAAAAC 60.614 45.833 19.08 8.50 0.00 2.43
4213 4910 4.278919 GGTGTTATCCCCTTTTCGAAAACA 59.721 41.667 19.08 10.98 0.00 2.83
4216 4913 6.199531 GTGTTATCCCCTTTTCGAAAACAAAC 59.800 38.462 19.08 15.15 0.00 2.93
4240 4937 1.992557 AGGATGGGTCTTTAGTGCCAA 59.007 47.619 0.00 0.00 0.00 4.52
4361 5058 9.434420 TCATGTGTTTTCAAATCTTCTGTTTTT 57.566 25.926 0.00 0.00 0.00 1.94
4631 5333 2.554032 GTGCTACCATGTGCAGAAAAGT 59.446 45.455 5.68 0.00 40.06 2.66
4636 5338 4.734398 ACCATGTGCAGAAAAGTTTTCA 57.266 36.364 26.06 9.61 0.00 2.69
4808 5514 8.477256 TCAAATGTTCTCTTGTTTGGAAGAAAT 58.523 29.630 0.00 0.00 31.52 2.17
4809 5515 8.545420 CAAATGTTCTCTTGTTTGGAAGAAATG 58.455 33.333 0.00 0.00 31.52 2.32
4810 5516 7.587037 ATGTTCTCTTGTTTGGAAGAAATGA 57.413 32.000 0.00 0.00 31.52 2.57
4859 5565 0.375454 CACGAACCTTGACGCAAACA 59.625 50.000 0.00 0.00 0.00 2.83
4891 5597 8.516234 GTCTAAGTAGATGATACACTGGTATGG 58.484 40.741 0.00 0.00 36.17 2.74
4969 5675 1.207089 CATGTGGACCCGTATGTCAGT 59.793 52.381 0.00 0.00 36.97 3.41
4973 5679 0.179145 GGACCCGTATGTCAGTCACG 60.179 60.000 0.00 0.00 36.97 4.35
4982 5688 0.817229 TGTCAGTCACGCAATGGCAA 60.817 50.000 0.00 0.00 41.24 4.52
5055 5761 0.324943 AGCTCATGGTGTGGTGGTAC 59.675 55.000 0.00 0.00 0.00 3.34
5204 5923 8.519526 TGTAGTTCCTTGCTAAATTTGGTATTG 58.480 33.333 0.00 0.00 0.00 1.90
5212 5931 6.007076 TGCTAAATTTGGTATTGGAGACACA 58.993 36.000 0.00 0.00 42.67 3.72
5222 5941 7.171653 TGGTATTGGAGACACATGTTGATTTA 58.828 34.615 0.00 0.00 42.67 1.40
5248 5967 0.323999 TGTAGCCTACTCTTGCCCGA 60.324 55.000 3.13 0.00 0.00 5.14
5249 5968 0.102663 GTAGCCTACTCTTGCCCGAC 59.897 60.000 0.00 0.00 0.00 4.79
5379 6098 3.887110 TGAAGCTCAATGGCATTAGATGG 59.113 43.478 13.23 0.00 34.17 3.51
5622 6372 6.474140 TTTACGGTCATCAGGTGTACATAT 57.526 37.500 0.00 0.00 0.00 1.78
5685 6435 1.002134 CATGAGGCGGGTCCAACTT 60.002 57.895 0.00 0.00 37.29 2.66
5707 6457 3.764218 AGAGACGAGAACTGGTTTAGGA 58.236 45.455 0.00 0.00 0.00 2.94
5712 6462 4.660168 ACGAGAACTGGTTTAGGAGTAGA 58.340 43.478 0.00 0.00 0.00 2.59
5733 6483 3.280197 AAAAATGCAAAAGGTGGCACT 57.720 38.095 18.45 0.26 43.75 4.40
5752 6502 0.998928 TCCATGTGTACCCAATGGCT 59.001 50.000 11.77 0.00 33.59 4.75
5783 6533 6.051717 CACCTACCAGATCACTCCAAAATAG 58.948 44.000 0.00 0.00 0.00 1.73
5824 6574 5.011227 TGGTAAAACTTTCACTAAATGGGGC 59.989 40.000 0.00 0.00 0.00 5.80
6174 6928 8.780616 ATATAGGATCATCTTCTCATCGGATT 57.219 34.615 0.00 0.00 0.00 3.01
6226 6980 0.887933 CCCCGGTTTTGAGTCCATTG 59.112 55.000 0.00 0.00 0.00 2.82
6242 6996 2.556622 CCATTGTTTACCTGTGTCCACC 59.443 50.000 0.00 0.00 0.00 4.61
6265 7019 6.157471 ACCTTCTATGTTAGAAAATACGGGGT 59.843 38.462 0.00 0.00 43.63 4.95
6416 7170 6.112734 TGCGTATGAAAGTAGAATTCCACAT 58.887 36.000 6.79 4.83 0.00 3.21
6514 7268 5.009310 ACACTTTGTTTCGTCCCCTAAATTC 59.991 40.000 0.00 0.00 0.00 2.17
6530 7284 5.751028 CCTAAATTCTGGACTTCTCTAAGCG 59.249 44.000 0.00 0.00 36.05 4.68
6549 7303 2.471749 GCGTCGTCGTTACAATTCCTTG 60.472 50.000 3.66 0.00 39.49 3.61
6597 7351 7.579726 GCTTGGAGCAGTAAATATATCTGTTG 58.420 38.462 0.00 0.00 41.89 3.33
6714 7476 9.672673 ATTCACATAGCTAGTTTGAAGTTGTAT 57.327 29.630 15.68 1.38 30.07 2.29
6796 7558 4.073169 TGATGTTTTTATTCGGCGTGTC 57.927 40.909 6.85 0.00 0.00 3.67
6916 7681 9.618890 TTCTAGAAAATCATAGTTCCTCCAATG 57.381 33.333 1.68 0.00 0.00 2.82
6974 7739 1.612462 CCCTTAAACCCCTCCAACGAC 60.612 57.143 0.00 0.00 0.00 4.34
7062 7829 3.042733 TTCGGCGGGGATTGCTCAT 62.043 57.895 7.21 0.00 0.00 2.90
7096 7864 5.920840 GCAACAAGACCTTAAGTGGAAATTC 59.079 40.000 0.97 0.00 0.00 2.17
7105 7873 6.183361 ACCTTAAGTGGAAATTCTTCTGAGGT 60.183 38.462 0.97 13.88 32.30 3.85
7273 8041 2.373169 AGTGTGATCCTTTCTCCAAGCA 59.627 45.455 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.943835 CATGTGTCGACGACCTTGCA 60.944 55.000 24.33 17.16 0.00 4.08
1 2 1.626654 CCATGTGTCGACGACCTTGC 61.627 60.000 24.33 12.54 0.00 4.01
3 4 1.292223 CCCATGTGTCGACGACCTT 59.708 57.895 24.33 11.32 0.00 3.50
4 5 2.646175 CCCCATGTGTCGACGACCT 61.646 63.158 24.33 7.22 0.00 3.85
5 6 2.125673 CCCCATGTGTCGACGACC 60.126 66.667 24.33 15.87 0.00 4.79
6 7 1.956629 ATCCCCCATGTGTCGACGAC 61.957 60.000 20.97 20.97 0.00 4.34
7 8 1.684391 ATCCCCCATGTGTCGACGA 60.684 57.895 11.62 0.00 0.00 4.20
8 9 1.521457 CATCCCCCATGTGTCGACG 60.521 63.158 11.62 0.00 0.00 5.12
9 10 0.179073 CTCATCCCCCATGTGTCGAC 60.179 60.000 9.11 9.11 33.66 4.20
10 11 0.617535 ACTCATCCCCCATGTGTCGA 60.618 55.000 0.00 0.00 34.72 4.20
11 12 0.462581 CACTCATCCCCCATGTGTCG 60.463 60.000 0.00 0.00 37.15 4.35
12 13 0.749454 GCACTCATCCCCCATGTGTC 60.749 60.000 0.00 0.00 37.15 3.67
13 14 1.210204 AGCACTCATCCCCCATGTGT 61.210 55.000 0.00 0.00 39.36 3.72
14 15 0.750546 CAGCACTCATCCCCCATGTG 60.751 60.000 0.00 0.00 33.66 3.21
15 16 1.611419 CAGCACTCATCCCCCATGT 59.389 57.895 0.00 0.00 33.66 3.21
16 17 1.826921 GCAGCACTCATCCCCCATG 60.827 63.158 0.00 0.00 0.00 3.66
17 18 1.866483 TTGCAGCACTCATCCCCCAT 61.866 55.000 0.00 0.00 0.00 4.00
18 19 2.537203 TTGCAGCACTCATCCCCCA 61.537 57.895 0.00 0.00 0.00 4.96
19 20 2.048603 GTTGCAGCACTCATCCCCC 61.049 63.158 0.00 0.00 0.00 5.40
20 21 2.048603 GGTTGCAGCACTCATCCCC 61.049 63.158 2.05 0.00 0.00 4.81
21 22 1.303561 TGGTTGCAGCACTCATCCC 60.304 57.895 2.05 0.00 0.00 3.85
22 23 1.878775 GTGGTTGCAGCACTCATCC 59.121 57.895 2.05 0.00 42.83 3.51
23 24 0.950555 TCGTGGTTGCAGCACTCATC 60.951 55.000 2.05 0.00 43.87 2.92
24 25 1.071299 TCGTGGTTGCAGCACTCAT 59.929 52.632 2.05 0.00 43.87 2.90
25 26 1.887242 GTCGTGGTTGCAGCACTCA 60.887 57.895 2.05 0.00 43.87 3.41
26 27 1.436195 TTGTCGTGGTTGCAGCACTC 61.436 55.000 2.05 0.00 43.87 3.51
27 28 1.451207 TTGTCGTGGTTGCAGCACT 60.451 52.632 2.05 0.00 43.87 4.40
28 29 1.298339 GTTGTCGTGGTTGCAGCAC 60.298 57.895 2.05 5.70 42.72 4.40
29 30 2.818487 CGTTGTCGTGGTTGCAGCA 61.818 57.895 2.05 0.00 0.00 4.41
30 31 2.042520 TTCGTTGTCGTGGTTGCAGC 62.043 55.000 0.00 0.00 38.33 5.25
31 32 0.042188 CTTCGTTGTCGTGGTTGCAG 60.042 55.000 0.00 0.00 38.33 4.41
32 33 2.010670 CTTCGTTGTCGTGGTTGCA 58.989 52.632 0.00 0.00 38.33 4.08
33 34 1.368850 GCTTCGTTGTCGTGGTTGC 60.369 57.895 0.00 0.00 38.33 4.17
34 35 1.191647 GTAGCTTCGTTGTCGTGGTTG 59.808 52.381 0.00 0.00 38.33 3.77
35 36 1.494824 GTAGCTTCGTTGTCGTGGTT 58.505 50.000 0.00 0.00 38.33 3.67
36 37 0.662374 CGTAGCTTCGTTGTCGTGGT 60.662 55.000 4.37 0.00 38.33 4.16
37 38 0.386352 TCGTAGCTTCGTTGTCGTGG 60.386 55.000 12.66 0.00 38.33 4.94
38 39 0.975544 CTCGTAGCTTCGTTGTCGTG 59.024 55.000 12.66 0.00 38.33 4.35
39 40 0.109873 CCTCGTAGCTTCGTTGTCGT 60.110 55.000 12.66 0.00 38.33 4.34
40 41 0.797249 CCCTCGTAGCTTCGTTGTCG 60.797 60.000 12.66 0.00 38.55 4.35
41 42 1.077089 GCCCTCGTAGCTTCGTTGTC 61.077 60.000 12.66 0.00 0.00 3.18
42 43 1.080025 GCCCTCGTAGCTTCGTTGT 60.080 57.895 12.66 0.00 0.00 3.32
43 44 0.460284 ATGCCCTCGTAGCTTCGTTG 60.460 55.000 12.66 7.02 0.00 4.10
44 45 0.179108 GATGCCCTCGTAGCTTCGTT 60.179 55.000 12.66 0.00 0.00 3.85
45 46 1.320344 TGATGCCCTCGTAGCTTCGT 61.320 55.000 12.66 0.00 37.25 3.85
46 47 0.179111 TTGATGCCCTCGTAGCTTCG 60.179 55.000 6.38 6.38 37.25 3.79
47 48 1.291132 GTTGATGCCCTCGTAGCTTC 58.709 55.000 0.00 0.00 35.55 3.86
48 49 0.460284 CGTTGATGCCCTCGTAGCTT 60.460 55.000 0.00 0.00 0.00 3.74
49 50 1.141881 CGTTGATGCCCTCGTAGCT 59.858 57.895 0.00 0.00 0.00 3.32
50 51 1.146358 GACGTTGATGCCCTCGTAGC 61.146 60.000 0.00 0.00 36.67 3.58
51 52 0.866061 CGACGTTGATGCCCTCGTAG 60.866 60.000 0.00 0.00 36.67 3.51
52 53 1.138036 CGACGTTGATGCCCTCGTA 59.862 57.895 0.00 0.00 36.67 3.43
53 54 2.126071 CGACGTTGATGCCCTCGT 60.126 61.111 0.00 0.00 39.21 4.18
54 55 2.885644 CCGACGTTGATGCCCTCG 60.886 66.667 3.74 0.00 0.00 4.63
55 56 2.311688 ATCCCGACGTTGATGCCCTC 62.312 60.000 3.74 0.00 0.00 4.30
56 57 2.367202 ATCCCGACGTTGATGCCCT 61.367 57.895 3.74 0.00 0.00 5.19
57 58 2.180204 CATCCCGACGTTGATGCCC 61.180 63.158 3.74 0.00 32.71 5.36
58 59 2.180204 CCATCCCGACGTTGATGCC 61.180 63.158 15.45 0.00 37.61 4.40
59 60 0.532862 ATCCATCCCGACGTTGATGC 60.533 55.000 15.45 0.00 37.61 3.91
60 61 1.220529 CATCCATCCCGACGTTGATG 58.779 55.000 3.74 14.42 38.45 3.07
61 62 0.830648 ACATCCATCCCGACGTTGAT 59.169 50.000 3.74 0.00 0.00 2.57
62 63 0.611200 AACATCCATCCCGACGTTGA 59.389 50.000 3.74 0.00 0.00 3.18
63 64 0.726827 CAACATCCATCCCGACGTTG 59.273 55.000 0.00 0.00 0.00 4.10
64 65 1.024579 GCAACATCCATCCCGACGTT 61.025 55.000 0.00 0.00 0.00 3.99
65 66 1.449601 GCAACATCCATCCCGACGT 60.450 57.895 0.00 0.00 0.00 4.34
66 67 1.024046 TTGCAACATCCATCCCGACG 61.024 55.000 0.00 0.00 0.00 5.12
67 68 0.451783 GTTGCAACATCCATCCCGAC 59.548 55.000 24.52 0.00 0.00 4.79
68 69 0.679640 GGTTGCAACATCCATCCCGA 60.680 55.000 29.55 0.00 0.00 5.14
69 70 0.964860 TGGTTGCAACATCCATCCCG 60.965 55.000 29.55 0.00 29.44 5.14
70 71 1.137479 CATGGTTGCAACATCCATCCC 59.863 52.381 29.55 11.42 40.64 3.85
71 72 1.137479 CCATGGTTGCAACATCCATCC 59.863 52.381 29.55 12.16 40.64 3.51
72 73 1.826720 ACCATGGTTGCAACATCCATC 59.173 47.619 29.55 12.55 40.64 3.51
73 74 1.826720 GACCATGGTTGCAACATCCAT 59.173 47.619 29.55 20.91 42.56 3.41
74 75 1.255882 GACCATGGTTGCAACATCCA 58.744 50.000 29.55 19.60 37.58 3.41
75 76 0.532115 GGACCATGGTTGCAACATCC 59.468 55.000 29.55 21.53 0.00 3.51
76 77 0.171007 CGGACCATGGTTGCAACATC 59.829 55.000 29.55 17.34 0.00 3.06
77 78 0.251121 TCGGACCATGGTTGCAACAT 60.251 50.000 29.55 18.02 0.00 2.71
78 79 1.149401 TCGGACCATGGTTGCAACA 59.851 52.632 29.55 16.61 0.00 3.33
79 80 1.579429 GTCGGACCATGGTTGCAAC 59.421 57.895 20.85 21.59 0.00 4.17
80 81 1.963855 CGTCGGACCATGGTTGCAA 60.964 57.895 20.85 0.00 0.00 4.08
81 82 2.358125 CGTCGGACCATGGTTGCA 60.358 61.111 20.85 2.36 0.00 4.08
82 83 3.124921 CCGTCGGACCATGGTTGC 61.125 66.667 20.85 6.97 0.00 4.17
83 84 1.447838 CTCCGTCGGACCATGGTTG 60.448 63.158 20.85 15.09 0.00 3.77
84 85 2.978824 CTCCGTCGGACCATGGTT 59.021 61.111 20.85 2.15 0.00 3.67
85 86 3.771160 GCTCCGTCGGACCATGGT 61.771 66.667 19.89 19.89 0.00 3.55
86 87 3.461773 AGCTCCGTCGGACCATGG 61.462 66.667 10.71 11.19 0.00 3.66
87 88 2.202797 CAGCTCCGTCGGACCATG 60.203 66.667 10.71 5.57 0.00 3.66
88 89 3.461773 CCAGCTCCGTCGGACCAT 61.462 66.667 10.71 0.00 0.00 3.55
91 92 3.827898 CTCCCAGCTCCGTCGGAC 61.828 72.222 10.71 7.79 0.00 4.79
115 116 3.207669 CTTGCATCTCCGCCAGCC 61.208 66.667 0.00 0.00 0.00 4.85
116 117 3.885521 GCTTGCATCTCCGCCAGC 61.886 66.667 0.00 0.00 42.57 4.85
117 118 3.570638 CGCTTGCATCTCCGCCAG 61.571 66.667 0.00 0.00 0.00 4.85
118 119 4.081185 TCGCTTGCATCTCCGCCA 62.081 61.111 0.00 0.00 0.00 5.69
119 120 3.567797 GTCGCTTGCATCTCCGCC 61.568 66.667 0.00 0.00 0.00 6.13
120 121 2.510238 AGTCGCTTGCATCTCCGC 60.510 61.111 0.00 0.00 0.00 5.54
121 122 0.179137 TACAGTCGCTTGCATCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
122 123 1.281899 GTACAGTCGCTTGCATCTCC 58.718 55.000 0.00 0.00 0.00 3.71
123 124 1.656095 GTGTACAGTCGCTTGCATCTC 59.344 52.381 0.00 0.00 0.00 2.75
124 125 1.714794 GTGTACAGTCGCTTGCATCT 58.285 50.000 0.00 0.00 0.00 2.90
125 126 0.366871 CGTGTACAGTCGCTTGCATC 59.633 55.000 0.00 0.00 0.00 3.91
126 127 1.014044 CCGTGTACAGTCGCTTGCAT 61.014 55.000 0.00 0.00 0.00 3.96
127 128 1.663388 CCGTGTACAGTCGCTTGCA 60.663 57.895 0.00 0.00 0.00 4.08
128 129 2.380410 CCCGTGTACAGTCGCTTGC 61.380 63.158 0.00 0.00 0.00 4.01
129 130 2.380410 GCCCGTGTACAGTCGCTTG 61.380 63.158 0.00 0.00 0.00 4.01
130 131 2.048503 GCCCGTGTACAGTCGCTT 60.049 61.111 0.00 0.00 0.00 4.68
131 132 2.989824 AGCCCGTGTACAGTCGCT 60.990 61.111 0.00 0.00 0.00 4.93
132 133 2.809601 CAGCCCGTGTACAGTCGC 60.810 66.667 0.00 0.00 0.00 5.19
133 134 2.809601 GCAGCCCGTGTACAGTCG 60.810 66.667 0.00 0.00 0.00 4.18
134 135 2.027625 GTGCAGCCCGTGTACAGTC 61.028 63.158 0.00 0.00 41.23 3.51
135 136 2.030562 GTGCAGCCCGTGTACAGT 59.969 61.111 0.00 0.00 41.23 3.55
136 137 2.742372 GGTGCAGCCCGTGTACAG 60.742 66.667 4.03 0.00 43.26 2.74
152 153 0.322187 AAAAAGGATCACCGGTCGGG 60.322 55.000 2.59 4.99 41.83 5.14
153 154 3.243128 AAAAAGGATCACCGGTCGG 57.757 52.632 2.59 7.97 41.83 4.79
169 170 1.286553 ACCCTATGATGCCGGGAAAAA 59.713 47.619 0.00 0.00 40.55 1.94
170 171 0.923358 ACCCTATGATGCCGGGAAAA 59.077 50.000 0.00 0.00 40.55 2.29
171 172 0.182537 CACCCTATGATGCCGGGAAA 59.817 55.000 0.00 0.00 40.55 3.13
172 173 1.836391 CACCCTATGATGCCGGGAA 59.164 57.895 0.00 0.00 40.55 3.97
173 174 2.818169 GCACCCTATGATGCCGGGA 61.818 63.158 2.18 0.00 40.55 5.14
174 175 2.281761 GCACCCTATGATGCCGGG 60.282 66.667 2.18 0.00 43.79 5.73
175 176 2.666190 CGCACCCTATGATGCCGG 60.666 66.667 0.00 0.00 38.69 6.13
176 177 3.349006 GCGCACCCTATGATGCCG 61.349 66.667 0.30 0.00 38.69 5.69
177 178 2.980233 GGCGCACCCTATGATGCC 60.980 66.667 10.83 0.00 42.14 4.40
188 189 4.603946 GTATCCCCTCGGGCGCAC 62.604 72.222 10.83 3.71 43.94 5.34
199 200 1.148498 CCCAAAGCTCGGGTATCCC 59.852 63.158 12.24 0.00 39.05 3.85
200 201 0.106894 CTCCCAAAGCTCGGGTATCC 59.893 60.000 18.37 0.00 44.81 2.59
201 202 1.069358 CTCTCCCAAAGCTCGGGTATC 59.931 57.143 18.37 0.00 44.81 2.24
202 203 1.123928 CTCTCCCAAAGCTCGGGTAT 58.876 55.000 18.37 0.00 44.81 2.73
203 204 0.976073 CCTCTCCCAAAGCTCGGGTA 60.976 60.000 18.37 9.13 44.81 3.69
204 205 2.294078 CCTCTCCCAAAGCTCGGGT 61.294 63.158 18.37 0.00 44.81 5.28
205 206 1.990060 TCCTCTCCCAAAGCTCGGG 60.990 63.158 13.96 13.96 46.03 5.14
206 207 1.219393 GTCCTCTCCCAAAGCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
207 208 1.153745 CGTCCTCTCCCAAAGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
208 209 0.108567 GTCGTCCTCTCCCAAAGCTC 60.109 60.000 0.00 0.00 0.00 4.09
209 210 0.543174 AGTCGTCCTCTCCCAAAGCT 60.543 55.000 0.00 0.00 0.00 3.74
210 211 0.108567 GAGTCGTCCTCTCCCAAAGC 60.109 60.000 0.00 0.00 37.22 3.51
211 212 1.203523 CTGAGTCGTCCTCTCCCAAAG 59.796 57.143 6.46 0.00 41.11 2.77
212 213 1.257743 CTGAGTCGTCCTCTCCCAAA 58.742 55.000 6.46 0.00 41.11 3.28
213 214 0.112606 ACTGAGTCGTCCTCTCCCAA 59.887 55.000 6.46 0.00 41.11 4.12
214 215 0.609406 CACTGAGTCGTCCTCTCCCA 60.609 60.000 6.46 0.00 41.11 4.37
215 216 1.939769 GCACTGAGTCGTCCTCTCCC 61.940 65.000 6.46 0.00 41.11 4.30
216 217 1.509004 GCACTGAGTCGTCCTCTCC 59.491 63.158 6.46 0.00 41.11 3.71
217 218 1.135731 CGCACTGAGTCGTCCTCTC 59.864 63.158 6.46 0.00 41.11 3.20
218 219 0.678366 ATCGCACTGAGTCGTCCTCT 60.678 55.000 6.46 0.00 41.11 3.69
219 220 0.171455 AATCGCACTGAGTCGTCCTC 59.829 55.000 4.82 0.00 40.89 3.71
220 221 0.603569 AAATCGCACTGAGTCGTCCT 59.396 50.000 4.82 0.00 0.00 3.85
221 222 2.273370 TAAATCGCACTGAGTCGTCC 57.727 50.000 4.82 0.00 0.00 4.79
222 223 3.435566 TCATAAATCGCACTGAGTCGTC 58.564 45.455 4.82 0.00 0.00 4.20
223 224 3.128764 TCTCATAAATCGCACTGAGTCGT 59.871 43.478 4.82 0.00 37.12 4.34
224 225 3.695816 TCTCATAAATCGCACTGAGTCG 58.304 45.455 0.00 0.00 37.12 4.18
225 226 6.256539 TGAAATCTCATAAATCGCACTGAGTC 59.743 38.462 0.00 0.00 37.12 3.36
226 227 6.108687 TGAAATCTCATAAATCGCACTGAGT 58.891 36.000 0.00 0.00 37.12 3.41
227 228 6.594284 TGAAATCTCATAAATCGCACTGAG 57.406 37.500 0.00 0.00 37.14 3.35
228 229 7.182361 GATGAAATCTCATAAATCGCACTGA 57.818 36.000 0.00 0.00 42.60 3.41
244 245 4.083110 CGCCCATGGTCATTAGATGAAATC 60.083 45.833 11.73 0.00 46.04 2.17
245 246 3.822735 CGCCCATGGTCATTAGATGAAAT 59.177 43.478 11.73 0.00 41.69 2.17
246 247 3.213506 CGCCCATGGTCATTAGATGAAA 58.786 45.455 11.73 0.00 41.69 2.69
247 248 2.849942 CGCCCATGGTCATTAGATGAA 58.150 47.619 11.73 0.00 41.69 2.57
248 249 1.543208 GCGCCCATGGTCATTAGATGA 60.543 52.381 11.73 0.00 36.84 2.92
249 250 0.877071 GCGCCCATGGTCATTAGATG 59.123 55.000 11.73 0.00 0.00 2.90
250 251 0.767375 AGCGCCCATGGTCATTAGAT 59.233 50.000 11.73 0.00 0.00 1.98
251 252 0.546122 AAGCGCCCATGGTCATTAGA 59.454 50.000 11.73 0.00 0.00 2.10
252 253 1.392589 AAAGCGCCCATGGTCATTAG 58.607 50.000 11.73 0.00 0.00 1.73
253 254 2.719531 TAAAGCGCCCATGGTCATTA 57.280 45.000 11.73 0.67 0.00 1.90
254 255 1.846007 TTAAAGCGCCCATGGTCATT 58.154 45.000 11.73 1.62 0.00 2.57
255 256 1.956477 GATTAAAGCGCCCATGGTCAT 59.044 47.619 11.73 0.00 0.00 3.06
256 257 1.064758 AGATTAAAGCGCCCATGGTCA 60.065 47.619 11.73 0.00 0.00 4.02
257 258 1.334869 CAGATTAAAGCGCCCATGGTC 59.665 52.381 11.73 0.00 0.00 4.02
258 259 1.064758 TCAGATTAAAGCGCCCATGGT 60.065 47.619 11.73 0.00 0.00 3.55
259 260 1.679139 TCAGATTAAAGCGCCCATGG 58.321 50.000 2.29 4.14 0.00 3.66
260 261 2.030540 CCATCAGATTAAAGCGCCCATG 60.031 50.000 2.29 0.00 0.00 3.66
261 262 2.233271 CCATCAGATTAAAGCGCCCAT 58.767 47.619 2.29 0.00 0.00 4.00
262 263 1.064758 ACCATCAGATTAAAGCGCCCA 60.065 47.619 2.29 0.00 0.00 5.36
263 264 1.334869 CACCATCAGATTAAAGCGCCC 59.665 52.381 2.29 0.00 0.00 6.13
264 265 1.334869 CCACCATCAGATTAAAGCGCC 59.665 52.381 2.29 0.00 0.00 6.53
265 266 2.288666 TCCACCATCAGATTAAAGCGC 58.711 47.619 0.00 0.00 0.00 5.92
266 267 4.963276 TTTCCACCATCAGATTAAAGCG 57.037 40.909 0.00 0.00 0.00 4.68
267 268 6.455360 TCATTTCCACCATCAGATTAAAGC 57.545 37.500 0.00 0.00 0.00 3.51
268 269 8.133627 GTCATCATTTCCACCATCAGATTAAAG 58.866 37.037 0.00 0.00 0.00 1.85
269 270 7.068593 GGTCATCATTTCCACCATCAGATTAAA 59.931 37.037 0.00 0.00 0.00 1.52
270 271 6.547141 GGTCATCATTTCCACCATCAGATTAA 59.453 38.462 0.00 0.00 0.00 1.40
271 272 6.064060 GGTCATCATTTCCACCATCAGATTA 58.936 40.000 0.00 0.00 0.00 1.75
272 273 4.891756 GGTCATCATTTCCACCATCAGATT 59.108 41.667 0.00 0.00 0.00 2.40
273 274 4.467769 GGTCATCATTTCCACCATCAGAT 58.532 43.478 0.00 0.00 0.00 2.90
274 275 3.682436 CGGTCATCATTTCCACCATCAGA 60.682 47.826 0.00 0.00 0.00 3.27
275 276 2.615447 CGGTCATCATTTCCACCATCAG 59.385 50.000 0.00 0.00 0.00 2.90
276 277 2.026356 ACGGTCATCATTTCCACCATCA 60.026 45.455 0.00 0.00 0.00 3.07
277 278 2.643551 ACGGTCATCATTTCCACCATC 58.356 47.619 0.00 0.00 0.00 3.51
278 279 2.806945 ACGGTCATCATTTCCACCAT 57.193 45.000 0.00 0.00 0.00 3.55
279 280 2.556189 CAAACGGTCATCATTTCCACCA 59.444 45.455 0.00 0.00 0.00 4.17
280 281 2.094752 CCAAACGGTCATCATTTCCACC 60.095 50.000 0.00 0.00 0.00 4.61
281 282 2.094752 CCCAAACGGTCATCATTTCCAC 60.095 50.000 0.00 0.00 0.00 4.02
282 283 2.166829 CCCAAACGGTCATCATTTCCA 58.833 47.619 0.00 0.00 0.00 3.53
283 284 2.423538 CTCCCAAACGGTCATCATTTCC 59.576 50.000 0.00 0.00 0.00 3.13
284 285 2.159379 GCTCCCAAACGGTCATCATTTC 60.159 50.000 0.00 0.00 0.00 2.17
285 286 1.818674 GCTCCCAAACGGTCATCATTT 59.181 47.619 0.00 0.00 0.00 2.32
286 287 1.004745 AGCTCCCAAACGGTCATCATT 59.995 47.619 0.00 0.00 0.00 2.57
287 288 0.620556 AGCTCCCAAACGGTCATCAT 59.379 50.000 0.00 0.00 0.00 2.45
288 289 0.321564 CAGCTCCCAAACGGTCATCA 60.322 55.000 0.00 0.00 0.00 3.07
289 290 1.026718 CCAGCTCCCAAACGGTCATC 61.027 60.000 0.00 0.00 0.00 2.92
290 291 1.002134 CCAGCTCCCAAACGGTCAT 60.002 57.895 0.00 0.00 0.00 3.06
291 292 2.429930 CCAGCTCCCAAACGGTCA 59.570 61.111 0.00 0.00 0.00 4.02
292 293 1.966451 CACCAGCTCCCAAACGGTC 60.966 63.158 0.00 0.00 0.00 4.79
293 294 2.113139 CACCAGCTCCCAAACGGT 59.887 61.111 0.00 0.00 0.00 4.83
294 295 2.672996 CCACCAGCTCCCAAACGG 60.673 66.667 0.00 0.00 0.00 4.44
295 296 3.365265 GCCACCAGCTCCCAAACG 61.365 66.667 0.00 0.00 38.99 3.60
296 297 3.365265 CGCCACCAGCTCCCAAAC 61.365 66.667 0.00 0.00 40.39 2.93
297 298 4.659172 CCGCCACCAGCTCCCAAA 62.659 66.667 0.00 0.00 40.39 3.28
334 335 3.885724 AATAGCATTTTCGTTTGGGGG 57.114 42.857 0.00 0.00 0.00 5.40
335 336 5.072040 AGAAATAGCATTTTCGTTTGGGG 57.928 39.130 5.93 0.00 39.93 4.96
336 337 9.233232 GTATAAGAAATAGCATTTTCGTTTGGG 57.767 33.333 5.45 0.00 39.93 4.12
337 338 9.781834 TGTATAAGAAATAGCATTTTCGTTTGG 57.218 29.630 5.45 0.00 39.93 3.28
361 362 8.173130 GCTTTACTGTACAACGCTTTATTATGT 58.827 33.333 0.00 0.00 0.00 2.29
362 363 8.172484 TGCTTTACTGTACAACGCTTTATTATG 58.828 33.333 0.00 0.00 0.00 1.90
363 364 8.173130 GTGCTTTACTGTACAACGCTTTATTAT 58.827 33.333 0.00 0.00 0.00 1.28
364 365 7.512297 GTGCTTTACTGTACAACGCTTTATTA 58.488 34.615 0.00 0.00 0.00 0.98
365 366 6.368213 GTGCTTTACTGTACAACGCTTTATT 58.632 36.000 0.00 0.00 0.00 1.40
366 367 5.389098 CGTGCTTTACTGTACAACGCTTTAT 60.389 40.000 0.00 0.00 0.00 1.40
367 368 4.084952 CGTGCTTTACTGTACAACGCTTTA 60.085 41.667 0.00 0.00 0.00 1.85
368 369 3.302870 CGTGCTTTACTGTACAACGCTTT 60.303 43.478 0.00 0.00 0.00 3.51
369 370 2.220133 CGTGCTTTACTGTACAACGCTT 59.780 45.455 0.00 0.00 0.00 4.68
370 371 1.790623 CGTGCTTTACTGTACAACGCT 59.209 47.619 0.00 0.00 0.00 5.07
371 372 1.523934 ACGTGCTTTACTGTACAACGC 59.476 47.619 12.54 1.40 0.00 4.84
372 373 3.976942 AGTACGTGCTTTACTGTACAACG 59.023 43.478 11.36 11.36 39.51 4.10
373 374 6.087291 CACTAGTACGTGCTTTACTGTACAAC 59.913 42.308 12.53 0.00 39.51 3.32
374 375 6.144854 CACTAGTACGTGCTTTACTGTACAA 58.855 40.000 12.53 0.00 39.51 2.41
375 376 5.239306 ACACTAGTACGTGCTTTACTGTACA 59.761 40.000 12.53 0.00 39.51 2.90
376 377 5.566774 CACACTAGTACGTGCTTTACTGTAC 59.433 44.000 12.53 0.00 38.45 2.90
377 378 5.239306 ACACACTAGTACGTGCTTTACTGTA 59.761 40.000 12.53 0.00 38.45 2.74
378 379 4.037208 ACACACTAGTACGTGCTTTACTGT 59.963 41.667 12.53 6.22 38.45 3.55
379 380 4.543692 ACACACTAGTACGTGCTTTACTG 58.456 43.478 12.53 5.60 38.45 2.74
380 381 4.843220 ACACACTAGTACGTGCTTTACT 57.157 40.909 12.53 1.79 38.45 2.24
381 382 5.116680 CAGAACACACTAGTACGTGCTTTAC 59.883 44.000 12.53 0.00 38.45 2.01
382 383 5.008911 TCAGAACACACTAGTACGTGCTTTA 59.991 40.000 12.53 0.00 38.45 1.85
383 384 4.049186 CAGAACACACTAGTACGTGCTTT 58.951 43.478 12.53 0.00 38.45 3.51
384 385 3.317149 TCAGAACACACTAGTACGTGCTT 59.683 43.478 12.53 6.94 38.45 3.91
385 386 2.882761 TCAGAACACACTAGTACGTGCT 59.117 45.455 11.87 11.87 38.45 4.40
386 387 3.278367 TCAGAACACACTAGTACGTGC 57.722 47.619 12.08 0.00 38.45 5.34
387 388 5.089411 CAGATCAGAACACACTAGTACGTG 58.911 45.833 10.89 10.89 40.67 4.49
388 389 4.760715 ACAGATCAGAACACACTAGTACGT 59.239 41.667 0.00 0.00 0.00 3.57
389 390 5.298197 ACAGATCAGAACACACTAGTACG 57.702 43.478 0.00 0.00 0.00 3.67
390 391 9.077674 CAATTACAGATCAGAACACACTAGTAC 57.922 37.037 0.00 0.00 0.00 2.73
391 392 7.759886 GCAATTACAGATCAGAACACACTAGTA 59.240 37.037 0.00 0.00 0.00 1.82
392 393 6.591834 GCAATTACAGATCAGAACACACTAGT 59.408 38.462 0.00 0.00 0.00 2.57
393 394 6.815641 AGCAATTACAGATCAGAACACACTAG 59.184 38.462 0.00 0.00 0.00 2.57
394 395 6.701340 AGCAATTACAGATCAGAACACACTA 58.299 36.000 0.00 0.00 0.00 2.74
395 396 5.555017 AGCAATTACAGATCAGAACACACT 58.445 37.500 0.00 0.00 0.00 3.55
396 397 5.869753 AGCAATTACAGATCAGAACACAC 57.130 39.130 0.00 0.00 0.00 3.82
397 398 5.412594 GGAAGCAATTACAGATCAGAACACA 59.587 40.000 0.00 0.00 0.00 3.72
398 399 5.163713 GGGAAGCAATTACAGATCAGAACAC 60.164 44.000 0.00 0.00 0.00 3.32
399 400 4.943705 GGGAAGCAATTACAGATCAGAACA 59.056 41.667 0.00 0.00 0.00 3.18
400 401 5.189180 AGGGAAGCAATTACAGATCAGAAC 58.811 41.667 0.00 0.00 0.00 3.01
401 402 5.441718 AGGGAAGCAATTACAGATCAGAA 57.558 39.130 0.00 0.00 0.00 3.02
402 403 6.560003 TTAGGGAAGCAATTACAGATCAGA 57.440 37.500 0.00 0.00 0.00 3.27
403 404 7.814264 AATTAGGGAAGCAATTACAGATCAG 57.186 36.000 0.00 0.00 0.00 2.90
404 405 8.593945 AAAATTAGGGAAGCAATTACAGATCA 57.406 30.769 0.00 0.00 0.00 2.92
406 407 8.633561 GCTAAAATTAGGGAAGCAATTACAGAT 58.366 33.333 2.61 0.00 33.38 2.90
407 408 7.834181 AGCTAAAATTAGGGAAGCAATTACAGA 59.166 33.333 2.61 0.00 35.63 3.41
408 409 8.000780 AGCTAAAATTAGGGAAGCAATTACAG 57.999 34.615 2.61 0.00 35.63 2.74
409 410 7.954666 AGCTAAAATTAGGGAAGCAATTACA 57.045 32.000 2.61 0.00 35.63 2.41
410 411 9.731819 GTTAGCTAAAATTAGGGAAGCAATTAC 57.268 33.333 7.99 0.00 35.63 1.89
411 412 9.695155 AGTTAGCTAAAATTAGGGAAGCAATTA 57.305 29.630 7.99 0.00 35.63 1.40
412 413 8.470002 CAGTTAGCTAAAATTAGGGAAGCAATT 58.530 33.333 7.99 0.00 35.63 2.32
413 414 7.416777 GCAGTTAGCTAAAATTAGGGAAGCAAT 60.417 37.037 7.99 0.00 41.15 3.56
414 415 6.127730 GCAGTTAGCTAAAATTAGGGAAGCAA 60.128 38.462 7.99 0.00 41.15 3.91
415 416 5.357032 GCAGTTAGCTAAAATTAGGGAAGCA 59.643 40.000 7.99 0.00 41.15 3.91
416 417 5.221067 GGCAGTTAGCTAAAATTAGGGAAGC 60.221 44.000 7.99 0.00 44.79 3.86
417 418 5.885912 TGGCAGTTAGCTAAAATTAGGGAAG 59.114 40.000 7.99 0.00 44.79 3.46
418 419 5.822204 TGGCAGTTAGCTAAAATTAGGGAA 58.178 37.500 7.99 0.00 44.79 3.97
419 420 5.444744 TGGCAGTTAGCTAAAATTAGGGA 57.555 39.130 7.99 0.00 44.79 4.20
420 421 7.817418 TTATGGCAGTTAGCTAAAATTAGGG 57.183 36.000 7.99 0.00 44.79 3.53
430 431 9.110502 GAGTAGTTTATTTTATGGCAGTTAGCT 57.889 33.333 0.00 0.00 44.79 3.32
431 432 8.343366 GGAGTAGTTTATTTTATGGCAGTTAGC 58.657 37.037 0.00 0.00 44.65 3.09
432 433 8.548721 CGGAGTAGTTTATTTTATGGCAGTTAG 58.451 37.037 0.00 0.00 0.00 2.34
433 434 8.259411 TCGGAGTAGTTTATTTTATGGCAGTTA 58.741 33.333 0.00 0.00 0.00 2.24
434 435 7.107542 TCGGAGTAGTTTATTTTATGGCAGTT 58.892 34.615 0.00 0.00 0.00 3.16
435 436 6.646267 TCGGAGTAGTTTATTTTATGGCAGT 58.354 36.000 0.00 0.00 0.00 4.40
436 437 7.657761 AGATCGGAGTAGTTTATTTTATGGCAG 59.342 37.037 0.00 0.00 0.00 4.85
437 438 7.506114 AGATCGGAGTAGTTTATTTTATGGCA 58.494 34.615 0.00 0.00 0.00 4.92
438 439 7.873505 AGAGATCGGAGTAGTTTATTTTATGGC 59.126 37.037 0.00 0.00 0.00 4.40
439 440 9.413048 GAGAGATCGGAGTAGTTTATTTTATGG 57.587 37.037 0.00 0.00 0.00 2.74
440 441 9.413048 GGAGAGATCGGAGTAGTTTATTTTATG 57.587 37.037 0.00 0.00 0.00 1.90
441 442 9.369672 AGGAGAGATCGGAGTAGTTTATTTTAT 57.630 33.333 0.00 0.00 0.00 1.40
442 443 8.763984 AGGAGAGATCGGAGTAGTTTATTTTA 57.236 34.615 0.00 0.00 0.00 1.52
443 444 7.663043 AGGAGAGATCGGAGTAGTTTATTTT 57.337 36.000 0.00 0.00 0.00 1.82
444 445 7.562088 AGAAGGAGAGATCGGAGTAGTTTATTT 59.438 37.037 0.00 0.00 0.00 1.40
445 446 7.064229 AGAAGGAGAGATCGGAGTAGTTTATT 58.936 38.462 0.00 0.00 0.00 1.40
446 447 6.607019 AGAAGGAGAGATCGGAGTAGTTTAT 58.393 40.000 0.00 0.00 0.00 1.40
447 448 6.003859 AGAAGGAGAGATCGGAGTAGTTTA 57.996 41.667 0.00 0.00 0.00 2.01
448 449 4.862371 AGAAGGAGAGATCGGAGTAGTTT 58.138 43.478 0.00 0.00 0.00 2.66
449 450 4.080243 TGAGAAGGAGAGATCGGAGTAGTT 60.080 45.833 0.00 0.00 0.00 2.24
450 451 3.456644 TGAGAAGGAGAGATCGGAGTAGT 59.543 47.826 0.00 0.00 0.00 2.73
451 452 4.079980 TGAGAAGGAGAGATCGGAGTAG 57.920 50.000 0.00 0.00 0.00 2.57
452 453 4.715534 ATGAGAAGGAGAGATCGGAGTA 57.284 45.455 0.00 0.00 0.00 2.59
453 454 3.593442 ATGAGAAGGAGAGATCGGAGT 57.407 47.619 0.00 0.00 0.00 3.85
454 455 7.880160 ATATTATGAGAAGGAGAGATCGGAG 57.120 40.000 0.00 0.00 0.00 4.63
455 456 9.755122 TTTATATTATGAGAAGGAGAGATCGGA 57.245 33.333 0.00 0.00 0.00 4.55
510 511 9.974980 ACATACGGATTTTACAAAAAGTTTGAT 57.025 25.926 7.68 0.00 0.00 2.57
525 526 7.391554 AGCAATGCTATTCATACATACGGATTT 59.608 33.333 5.69 0.00 36.99 2.17
534 535 3.402110 CCCGAGCAATGCTATTCATACA 58.598 45.455 8.12 0.00 39.88 2.29
598 600 2.593956 GCCCACCTTCTCCGTCCTT 61.594 63.158 0.00 0.00 0.00 3.36
628 637 2.662596 GTCTCCATGGACACCGCA 59.337 61.111 11.44 0.00 36.35 5.69
792 805 8.383175 CCTTTCCTTTGCCTATATATGGAAGTA 58.617 37.037 0.00 0.00 34.25 2.24
851 864 1.513858 TAAGGGGTCCACACACACTT 58.486 50.000 0.00 0.00 0.00 3.16
927 942 0.248580 CTGCGCCAACCGTACGTATA 60.249 55.000 15.21 0.00 39.71 1.47
992 1007 5.957842 TGTGGCAATCTTCTCGTTTATTT 57.042 34.783 0.00 0.00 0.00 1.40
993 1008 5.957842 TTGTGGCAATCTTCTCGTTTATT 57.042 34.783 0.00 0.00 0.00 1.40
994 1009 5.619981 GCTTTGTGGCAATCTTCTCGTTTAT 60.620 40.000 0.00 0.00 0.00 1.40
995 1010 4.320202 GCTTTGTGGCAATCTTCTCGTTTA 60.320 41.667 0.00 0.00 0.00 2.01
996 1011 3.550842 GCTTTGTGGCAATCTTCTCGTTT 60.551 43.478 0.00 0.00 0.00 3.60
997 1012 2.030805 GCTTTGTGGCAATCTTCTCGTT 60.031 45.455 0.00 0.00 0.00 3.85
998 1013 1.537202 GCTTTGTGGCAATCTTCTCGT 59.463 47.619 0.00 0.00 0.00 4.18
1026 1041 5.886992 TCAACGTTGAAGCTATATCTTCGA 58.113 37.500 27.94 6.94 44.01 3.71
1027 1042 6.034577 TGTTCAACGTTGAAGCTATATCTTCG 59.965 38.462 37.00 4.47 46.80 3.79
1028 1043 7.290857 TGTTCAACGTTGAAGCTATATCTTC 57.709 36.000 37.00 23.30 46.80 2.87
1051 1071 6.429385 AGATTTCAAAGGAGTCTGCTAACTTG 59.571 38.462 0.00 0.00 0.00 3.16
1060 1084 4.268359 GCCATGAGATTTCAAAGGAGTCT 58.732 43.478 11.02 0.00 36.78 3.24
1070 1094 3.117491 TGAGGATCGCCATGAGATTTC 57.883 47.619 0.00 2.67 38.61 2.17
1153 1177 6.536224 TGAGCTGATACAGAAATACATGTGTG 59.464 38.462 9.11 0.73 32.44 3.82
1239 1263 1.689273 GCTCCTCTTATCCACATCGGT 59.311 52.381 0.00 0.00 35.57 4.69
1246 1270 1.207089 CCGTGTTGCTCCTCTTATCCA 59.793 52.381 0.00 0.00 0.00 3.41
1286 1310 6.656270 TGCATCATGAAAAAGAAGCTTAGAGA 59.344 34.615 0.00 0.00 30.45 3.10
1339 1363 9.796120 CCTAAGAACAACATGTTTACAAAAGAA 57.204 29.630 8.77 0.00 41.28 2.52
1346 1372 5.106277 GGGCTCCTAAGAACAACATGTTTAC 60.106 44.000 8.77 3.44 41.28 2.01
1388 1414 9.225436 TGTGTCATGTTAACAGCAGATATAAAA 57.775 29.630 14.65 0.00 0.00 1.52
1389 1415 8.785329 TGTGTCATGTTAACAGCAGATATAAA 57.215 30.769 14.65 0.00 0.00 1.40
1390 1416 8.785329 TTGTGTCATGTTAACAGCAGATATAA 57.215 30.769 14.65 11.04 0.00 0.98
1391 1417 8.785329 TTTGTGTCATGTTAACAGCAGATATA 57.215 30.769 14.65 6.11 0.00 0.86
1392 1418 7.686438 TTTGTGTCATGTTAACAGCAGATAT 57.314 32.000 14.65 0.00 0.00 1.63
1393 1419 7.390162 TCATTTGTGTCATGTTAACAGCAGATA 59.610 33.333 14.65 7.50 0.00 1.98
1394 1420 6.207221 TCATTTGTGTCATGTTAACAGCAGAT 59.793 34.615 14.65 5.95 0.00 2.90
1395 1421 5.530543 TCATTTGTGTCATGTTAACAGCAGA 59.469 36.000 14.65 8.99 0.00 4.26
1396 1422 5.761003 TCATTTGTGTCATGTTAACAGCAG 58.239 37.500 14.65 6.78 0.00 4.24
1397 1423 5.764487 TCATTTGTGTCATGTTAACAGCA 57.236 34.783 14.65 9.87 0.00 4.41
1398 1424 7.645340 GGATATCATTTGTGTCATGTTAACAGC 59.355 37.037 14.65 7.44 0.00 4.40
1399 1425 8.896744 AGGATATCATTTGTGTCATGTTAACAG 58.103 33.333 14.65 6.58 0.00 3.16
1400 1426 8.806429 AGGATATCATTTGTGTCATGTTAACA 57.194 30.769 11.41 11.41 0.00 2.41
1401 1427 8.892723 TGAGGATATCATTTGTGTCATGTTAAC 58.107 33.333 4.83 0.00 31.12 2.01
1402 1428 9.460019 TTGAGGATATCATTTGTGTCATGTTAA 57.540 29.630 4.83 0.00 37.89 2.01
1403 1429 9.460019 TTTGAGGATATCATTTGTGTCATGTTA 57.540 29.630 4.83 0.00 37.89 2.41
1404 1430 7.943079 TTGAGGATATCATTTGTGTCATGTT 57.057 32.000 4.83 0.00 37.89 2.71
1405 1431 7.943079 TTTGAGGATATCATTTGTGTCATGT 57.057 32.000 4.83 0.00 37.89 3.21
1433 1459 9.903682 CTTGACTCATTTGTATCATGTTTTTCT 57.096 29.630 0.00 0.00 0.00 2.52
1434 1460 8.642020 GCTTGACTCATTTGTATCATGTTTTTC 58.358 33.333 0.00 0.00 0.00 2.29
1435 1461 8.143193 TGCTTGACTCATTTGTATCATGTTTTT 58.857 29.630 0.00 0.00 0.00 1.94
1436 1462 7.660112 TGCTTGACTCATTTGTATCATGTTTT 58.340 30.769 0.00 0.00 0.00 2.43
1437 1463 7.218228 TGCTTGACTCATTTGTATCATGTTT 57.782 32.000 0.00 0.00 0.00 2.83
1438 1464 6.822667 TGCTTGACTCATTTGTATCATGTT 57.177 33.333 0.00 0.00 0.00 2.71
1439 1465 6.822667 TTGCTTGACTCATTTGTATCATGT 57.177 33.333 0.00 0.00 0.00 3.21
1440 1466 6.631636 CGATTGCTTGACTCATTTGTATCATG 59.368 38.462 0.00 0.00 0.00 3.07
1441 1467 6.722301 CGATTGCTTGACTCATTTGTATCAT 58.278 36.000 0.00 0.00 0.00 2.45
1442 1468 5.447683 GCGATTGCTTGACTCATTTGTATCA 60.448 40.000 0.00 0.00 38.39 2.15
1443 1469 4.966366 GCGATTGCTTGACTCATTTGTATC 59.034 41.667 0.00 0.00 38.39 2.24
1444 1470 4.494690 CGCGATTGCTTGACTCATTTGTAT 60.495 41.667 0.00 0.00 39.65 2.29
1445 1471 3.181521 CGCGATTGCTTGACTCATTTGTA 60.182 43.478 0.00 0.00 39.65 2.41
1446 1472 2.413239 CGCGATTGCTTGACTCATTTGT 60.413 45.455 0.00 0.00 39.65 2.83
1447 1473 2.159667 TCGCGATTGCTTGACTCATTTG 60.160 45.455 3.71 0.00 39.65 2.32
1448 1474 2.076100 TCGCGATTGCTTGACTCATTT 58.924 42.857 3.71 0.00 39.65 2.32
1449 1475 1.725641 TCGCGATTGCTTGACTCATT 58.274 45.000 3.71 0.00 39.65 2.57
1450 1476 1.863454 GATCGCGATTGCTTGACTCAT 59.137 47.619 24.55 0.00 39.65 2.90
1451 1477 1.134995 AGATCGCGATTGCTTGACTCA 60.135 47.619 24.55 0.00 39.65 3.41
1452 1478 1.565305 AGATCGCGATTGCTTGACTC 58.435 50.000 24.55 7.81 39.65 3.36
1453 1479 2.544694 CCTAGATCGCGATTGCTTGACT 60.545 50.000 24.55 15.58 39.65 3.41
1454 1480 1.789464 CCTAGATCGCGATTGCTTGAC 59.211 52.381 24.55 8.38 39.65 3.18
1506 1532 6.942532 ACATTTCTCTAGTTCACTGCAAAA 57.057 33.333 0.00 0.00 0.00 2.44
1507 1533 6.942532 AACATTTCTCTAGTTCACTGCAAA 57.057 33.333 0.00 0.00 0.00 3.68
1798 1855 8.912988 ACTCTTTTCATCTAAAAACATGTTCCA 58.087 29.630 12.39 0.00 36.64 3.53
1878 1935 1.720852 GTCACATGCATTTTTCACGGC 59.279 47.619 0.00 0.00 0.00 5.68
1918 2295 7.544217 ACACAAAAATAATTTAATCTCGTGGCC 59.456 33.333 0.00 0.00 0.00 5.36
2023 2401 9.627395 CAACCCAACACGATATACAAATAAAAA 57.373 29.630 0.00 0.00 0.00 1.94
2167 2574 3.744426 ACGGTTTCAACGTGGAATAAGAG 59.256 43.478 6.13 0.00 43.78 2.85
2212 2619 1.748493 GAAAACTTCATGGCCGCCATA 59.252 47.619 24.66 9.61 43.15 2.74
2266 2673 3.244078 TGGAGCGAGAGAAAAACTAAGCA 60.244 43.478 0.00 0.00 0.00 3.91
2436 2851 6.942886 TCGCAAACATTATTTGAAATCCAC 57.057 33.333 3.62 0.00 0.00 4.02
2840 3259 6.418819 CCAACTGCAGTAATTCTGAAACAAAG 59.581 38.462 22.01 0.00 46.27 2.77
2845 3264 5.009610 GGAACCAACTGCAGTAATTCTGAAA 59.990 40.000 22.01 0.00 46.27 2.69
2882 3301 4.589216 TTGGTGATTTTTCTTCTGGCAG 57.411 40.909 8.58 8.58 0.00 4.85
2932 3351 1.596496 CTGGTAATTCCCCAGGGTCT 58.404 55.000 4.22 0.00 44.77 3.85
2964 3383 3.640498 TCACAATGAAGATTTGTTGGGCA 59.360 39.130 0.00 0.00 35.18 5.36
3329 3760 4.574674 ACCAGGAAATGCTATGACTTCA 57.425 40.909 0.00 0.00 0.00 3.02
3454 3885 4.501071 GGAAGTAAGACGTTCATAGGCAA 58.499 43.478 0.00 0.00 0.00 4.52
3519 4211 7.232534 ACTTTTCCTACAAACCAAAGATGCATA 59.767 33.333 0.00 0.00 0.00 3.14
3520 4212 6.041979 ACTTTTCCTACAAACCAAAGATGCAT 59.958 34.615 0.00 0.00 0.00 3.96
3531 4223 9.634163 TTTCTTTTTCTCACTTTTCCTACAAAC 57.366 29.630 0.00 0.00 0.00 2.93
3598 4291 4.559153 GACCCATTCATTGAACCAAACAG 58.441 43.478 0.15 0.00 0.00 3.16
3720 4416 9.723601 AATCCTATGTTTTGCACATACATTTTT 57.276 25.926 11.44 1.62 45.00 1.94
3722 4418 8.530311 TCAATCCTATGTTTTGCACATACATTT 58.470 29.630 11.44 0.41 45.00 2.32
3883 4580 7.490840 TGGAAATCCTATACGTGAATTACGAA 58.509 34.615 4.18 0.00 45.62 3.85
4051 4748 8.117813 TGGTTCATAAGTAAAATGGAGGAAAC 57.882 34.615 0.00 0.00 0.00 2.78
4100 4797 6.630071 AGGTCCAAATGAATGTTAAATTCCG 58.370 36.000 0.00 0.00 0.00 4.30
4184 4881 1.212250 AAGGGGATAACACCGGCCTT 61.212 55.000 0.00 0.00 45.76 4.35
4207 4904 3.230976 ACCCATCCTCCTGTTTGTTTTC 58.769 45.455 0.00 0.00 0.00 2.29
4212 4909 2.887151 AAGACCCATCCTCCTGTTTG 57.113 50.000 0.00 0.00 0.00 2.93
4213 4910 3.916989 ACTAAAGACCCATCCTCCTGTTT 59.083 43.478 0.00 0.00 0.00 2.83
4216 4913 2.420687 GCACTAAAGACCCATCCTCCTG 60.421 54.545 0.00 0.00 0.00 3.86
4298 4995 8.355169 TGAAGACAGAAGAAAATGAAAATCCTG 58.645 33.333 0.00 0.00 0.00 3.86
4568 5270 6.533012 TGCAAAGTTTCGATTTCAAATGTTCA 59.467 30.769 0.00 0.00 0.00 3.18
4580 5282 5.181811 TGATGTTGATCTGCAAAGTTTCGAT 59.818 36.000 0.00 0.00 38.44 3.59
4839 5545 0.653636 GTTTGCGTCAAGGTTCGTGA 59.346 50.000 0.00 0.00 0.00 4.35
4859 5565 9.823647 CAGTGTATCATCTACTTAGACCATTTT 57.176 33.333 0.00 0.00 34.72 1.82
4969 5675 2.918345 GCACCTTGCCATTGCGTGA 61.918 57.895 0.42 0.00 41.78 4.35
4973 5679 2.047939 GGTGCACCTTGCCATTGC 60.048 61.111 29.12 0.00 44.23 3.56
4982 5688 1.943730 TTCCCCAACTTGGTGCACCT 61.944 55.000 34.75 14.17 35.17 4.00
5015 5721 6.203072 AGCTAGGTACTCCTTGGATTAAGAA 58.797 40.000 0.00 0.00 42.12 2.52
5204 5923 7.615582 TTCTCATAAATCAACATGTGTCTCC 57.384 36.000 0.00 0.00 0.00 3.71
5212 5931 9.277783 GTAGGCTACATTCTCATAAATCAACAT 57.722 33.333 19.55 0.00 0.00 2.71
5222 5941 4.202305 GGCAAGAGTAGGCTACATTCTCAT 60.202 45.833 25.48 5.59 0.00 2.90
5248 5967 3.678252 GCTCTATGCATGTCTCACAGTGT 60.678 47.826 10.16 0.00 42.31 3.55
5249 5968 2.864946 GCTCTATGCATGTCTCACAGTG 59.135 50.000 10.16 0.00 42.31 3.66
5338 6057 8.958119 AGCTTCAGACGATATTTATTTTACCA 57.042 30.769 0.00 0.00 0.00 3.25
5354 6073 4.194640 TCTAATGCCATTGAGCTTCAGAC 58.805 43.478 0.00 0.00 0.00 3.51
5358 6077 3.305199 GCCATCTAATGCCATTGAGCTTC 60.305 47.826 0.00 0.00 0.00 3.86
5360 6079 2.236766 GCCATCTAATGCCATTGAGCT 58.763 47.619 0.00 0.00 0.00 4.09
5601 6351 6.063404 TGTATATGTACACCTGATGACCGTA 58.937 40.000 0.00 0.00 35.94 4.02
5658 6408 1.671054 CCGCCTCATGAACCGTGTT 60.671 57.895 12.06 0.00 0.00 3.32
5685 6435 4.914983 TCCTAAACCAGTTCTCGTCTCTA 58.085 43.478 0.00 0.00 0.00 2.43
5733 6483 0.998928 AGCCATTGGGTACACATGGA 59.001 50.000 23.00 0.93 37.40 3.41
5752 6502 1.361197 TGATCTGGTAGGTGGGTCTCA 59.639 52.381 0.00 0.00 0.00 3.27
5824 6574 8.661352 ATTTAACAAGTGGTTTCCAATCTTTG 57.339 30.769 0.00 0.00 40.96 2.77
5982 6733 8.950210 CCAAGCAGAAAGTTAGAATAGAATCAA 58.050 33.333 0.00 0.00 0.00 2.57
6169 6923 2.509052 TCGATCTGGCTTACAATCCG 57.491 50.000 0.00 0.00 0.00 4.18
6174 6928 2.486918 CATGCATCGATCTGGCTTACA 58.513 47.619 0.00 0.00 0.00 2.41
6212 6966 5.977129 CACAGGTAAACAATGGACTCAAAAC 59.023 40.000 0.00 0.00 0.00 2.43
6226 6980 3.487120 AGAAGGTGGACACAGGTAAAC 57.513 47.619 4.69 0.00 0.00 2.01
6242 6996 8.199449 TGTACCCCGTATTTTCTAACATAGAAG 58.801 37.037 0.64 0.00 44.81 2.85
6265 7019 5.165676 CACGGTAGAAACTATGCTTGTGTA 58.834 41.667 0.00 0.00 0.00 2.90
6416 7170 0.987294 CCCTCTCTGAAAGAAGGGCA 59.013 55.000 9.93 0.00 46.34 5.36
6447 7201 4.624913 AGTGTTAGGATTCAGATCTCCCA 58.375 43.478 0.00 0.00 32.66 4.37
6488 7242 3.564053 AGGGGACGAAACAAAGTGTTA 57.436 42.857 0.00 0.00 40.14 2.41
6514 7268 1.469308 ACGACGCTTAGAGAAGTCCAG 59.531 52.381 0.00 0.00 34.90 3.86
6530 7284 2.477375 TGCAAGGAATTGTAACGACGAC 59.523 45.455 0.00 0.00 0.00 4.34
6549 7303 1.261619 CCACACTCGAGAAACTTGTGC 59.738 52.381 21.68 0.00 36.95 4.57
6597 7351 9.672673 ACAACATACTAAGCCATATGATAATCC 57.327 33.333 3.65 0.00 33.73 3.01
6606 7360 9.991906 GGTAAAGATACAACATACTAAGCCATA 57.008 33.333 0.00 0.00 33.45 2.74
6714 7476 7.986889 TCTATGAAGATAATGCAGCTTGTGTTA 59.013 33.333 0.00 0.00 31.52 2.41
6765 7527 7.700234 GCCGAATAAAAACATCATGTGAACATA 59.300 33.333 0.00 0.00 34.26 2.29
6796 7558 9.850628 CAAGAATGTATATGGCTTTGGATAATG 57.149 33.333 0.00 0.00 0.00 1.90
6862 7626 3.354089 AAACAGAGTTTTGCATCCACG 57.646 42.857 0.00 0.00 0.00 4.94
6974 7739 0.747255 CTGACAGGTCCTGATACCCG 59.253 60.000 26.18 4.48 40.71 5.28
7029 7794 1.811266 CGAACATGTCGCTCCCCTG 60.811 63.158 0.00 0.00 44.14 4.45
7030 7795 2.579201 CGAACATGTCGCTCCCCT 59.421 61.111 0.00 0.00 44.14 4.79
7062 7829 3.565307 AGGTCTTGTTGCCAATCAAAGA 58.435 40.909 0.00 0.00 36.26 2.52
7096 7864 7.099764 TGTTGATTTCTAGCTAACCTCAGAAG 58.900 38.462 0.00 0.00 0.00 2.85
7105 7873 7.882791 TGAACCTCATTGTTGATTTCTAGCTAA 59.117 33.333 0.00 0.00 30.43 3.09
7273 8041 2.799452 GCGGGGCATGCATTCCATT 61.799 57.895 21.36 0.00 29.71 3.16
7309 8077 4.451900 AGCAAAGCAGTTAGTAGTTGTGT 58.548 39.130 0.00 0.00 0.00 3.72
7320 8088 0.668535 GGAACCGAAGCAAAGCAGTT 59.331 50.000 0.00 0.00 0.00 3.16
7321 8089 1.172812 GGGAACCGAAGCAAAGCAGT 61.173 55.000 0.00 0.00 40.86 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.