Multiple sequence alignment - TraesCS2D01G316100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G316100 chr2D 100.000 4126 0 0 1 4126 405408981 405413106 0.000000e+00 7620.0
1 TraesCS2D01G316100 chr2D 94.231 52 3 0 1389 1440 331544242 331544191 3.420000e-11 80.5
2 TraesCS2D01G316100 chr2A 93.681 1994 103 14 2137 4126 543576635 543578609 0.000000e+00 2963.0
3 TraesCS2D01G316100 chr2A 95.062 405 13 4 184 582 71263098 71262695 7.530000e-177 630.0
4 TraesCS2D01G316100 chr2A 94.815 405 15 3 184 582 71210469 71210065 9.740000e-176 627.0
5 TraesCS2D01G316100 chr2A 90.974 421 30 4 983 1402 543573731 543574144 1.000000e-155 560.0
6 TraesCS2D01G316100 chr2A 93.662 142 9 0 1448 1589 543574142 543574283 3.230000e-51 213.0
7 TraesCS2D01G316100 chr2A 89.691 97 5 1 1 97 543573056 543573147 7.250000e-23 119.0
8 TraesCS2D01G316100 chr2A 100.000 31 0 0 2066 2096 543576605 543576635 1.600000e-04 58.4
9 TraesCS2D01G316100 chr2B 91.142 1366 76 17 1847 3187 480923955 480925300 0.000000e+00 1810.0
10 TraesCS2D01G316100 chr2B 90.271 1367 74 20 2764 4126 480933330 480934641 0.000000e+00 1733.0
11 TraesCS2D01G316100 chr2B 91.369 811 54 8 599 1401 480922662 480923464 0.000000e+00 1096.0
12 TraesCS2D01G316100 chr2B 91.577 653 43 6 599 1242 480925720 480926369 0.000000e+00 891.0
13 TraesCS2D01G316100 chr2B 88.006 617 50 11 1746 2346 480932125 480932733 0.000000e+00 708.0
14 TraesCS2D01G316100 chr2B 93.651 315 14 1 1444 1758 480926620 480926928 2.250000e-127 466.0
15 TraesCS2D01G316100 chr2B 93.950 281 16 1 2486 2765 480932890 480933170 1.370000e-114 424.0
16 TraesCS2D01G316100 chr2B 84.036 332 25 16 1451 1773 480923468 480923780 1.120000e-75 294.0
17 TraesCS2D01G316100 chr2B 94.444 180 10 0 1 180 480922484 480922663 1.130000e-70 278.0
18 TraesCS2D01G316100 chr2B 90.000 180 12 1 3183 3362 480925379 480925552 1.150000e-55 228.0
19 TraesCS2D01G316100 chr2B 94.483 145 8 0 36 180 480925577 480925721 1.490000e-54 224.0
20 TraesCS2D01G316100 chr2B 91.111 135 8 2 1271 1404 480926488 480926619 3.280000e-41 180.0
21 TraesCS2D01G316100 chr2B 78.414 227 46 2 2549 2775 481163500 481163723 1.200000e-30 145.0
22 TraesCS2D01G316100 chr2B 93.617 47 3 0 1771 1817 480923905 480923951 2.060000e-08 71.3
23 TraesCS2D01G316100 chr5D 94.824 425 18 2 166 586 223510314 223509890 0.000000e+00 660.0
24 TraesCS2D01G316100 chr1A 96.250 400 12 2 186 582 548306795 548307194 0.000000e+00 652.0
25 TraesCS2D01G316100 chr4B 94.724 417 17 3 179 591 117779870 117780285 0.000000e+00 643.0
26 TraesCS2D01G316100 chr4B 95.274 402 14 3 184 581 642632517 642632917 2.090000e-177 632.0
27 TraesCS2D01G316100 chr3B 95.545 404 14 2 182 582 751123263 751123665 0.000000e+00 643.0
28 TraesCS2D01G316100 chrUn 94.903 412 16 3 184 591 76192484 76192894 1.250000e-179 640.0
29 TraesCS2D01G316100 chr4D 95.285 403 13 4 184 581 343549814 343549413 5.820000e-178 634.0
30 TraesCS2D01G316100 chr7D 95.918 49 2 0 1391 1439 101475467 101475419 3.420000e-11 80.5
31 TraesCS2D01G316100 chr6D 94.231 52 3 0 1395 1446 370690601 370690550 3.420000e-11 80.5
32 TraesCS2D01G316100 chr1B 95.745 47 2 0 1394 1440 305536661 305536615 4.420000e-10 76.8
33 TraesCS2D01G316100 chr1B 88.136 59 5 2 1379 1436 669151967 669152024 7.400000e-08 69.4
34 TraesCS2D01G316100 chr5B 92.308 52 4 0 1393 1444 285934782 285934833 1.590000e-09 75.0
35 TraesCS2D01G316100 chr5B 90.909 55 4 1 1387 1440 461134376 461134430 5.720000e-09 73.1
36 TraesCS2D01G316100 chr7B 93.478 46 3 0 1395 1440 748341820 748341865 7.400000e-08 69.4
37 TraesCS2D01G316100 chr6B 90.385 52 3 2 1395 1444 618335036 618334985 2.660000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G316100 chr2D 405408981 405413106 4125 False 7620.00 7620 100.000000 1 4126 1 chr2D.!!$F1 4125
1 TraesCS2D01G316100 chr2A 543573056 543578609 5553 False 782.68 2963 93.601600 1 4126 5 chr2A.!!$F1 4125
2 TraesCS2D01G316100 chr2B 480932125 480934641 2516 False 955.00 1733 90.742333 1746 4126 3 chr2B.!!$F3 2380
3 TraesCS2D01G316100 chr2B 480922484 480926928 4444 False 553.83 1810 91.543000 1 3362 10 chr2B.!!$F2 3361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 608 0.030504 TTCTTACACGTTCGTGCGGA 59.969 50.0 22.35 15.29 39.53 5.54 F
1903 2370 0.031716 AGGAGGAGCACATAGGCAGA 60.032 55.0 0.00 0.00 35.83 4.26 F
2133 4348 0.037605 ACGTCAGGCGAGTAAAAGGG 60.038 55.0 0.00 0.00 44.77 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 4329 0.037605 CCCTTTTACTCGCCTGACGT 60.038 55.000 0.00 0.00 44.19 4.34 R
2717 4974 0.617820 TTAGGGCCTCGGCTTTCTCT 60.618 55.000 10.74 1.65 41.60 3.10 R
3421 5948 1.000506 GTGTAGACTGTTCCTCGGCAA 59.999 52.381 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 142 6.588204 ACATGTTACTCAGTAGTTTTGGTCA 58.412 36.000 0.00 0.00 37.15 4.02
117 150 3.980775 CAGTAGTTTTGGTCATTTTGCCG 59.019 43.478 0.00 0.00 0.00 5.69
146 291 0.179009 TGCCTGCAAAGAGAGCTTGT 60.179 50.000 0.00 0.00 33.79 3.16
171 316 1.519719 CTCTCCCCCTCGCAAAGAG 59.480 63.158 0.00 0.00 46.44 2.85
180 325 0.250081 CTCGCAAAGAGGGCCTATCC 60.250 60.000 5.73 0.00 43.20 2.59
181 326 0.980754 TCGCAAAGAGGGCCTATCCA 60.981 55.000 5.73 0.00 36.21 3.41
182 327 0.109342 CGCAAAGAGGGCCTATCCAT 59.891 55.000 5.73 0.00 36.21 3.41
183 328 1.613836 GCAAAGAGGGCCTATCCATG 58.386 55.000 5.73 5.05 36.21 3.66
185 330 1.152649 AAAGAGGGCCTATCCATGGG 58.847 55.000 13.02 0.00 36.21 4.00
187 332 0.769776 AGAGGGCCTATCCATGGGTG 60.770 60.000 13.02 2.18 36.21 4.61
189 334 2.845345 GGGCCTATCCATGGGTGGG 61.845 68.421 22.92 22.92 46.06 4.61
191 336 2.845345 GCCTATCCATGGGTGGGGG 61.845 68.421 27.41 17.26 46.06 5.40
192 337 2.845345 CCTATCCATGGGTGGGGGC 61.845 68.421 19.72 0.00 46.06 5.80
193 338 1.775877 CTATCCATGGGTGGGGGCT 60.776 63.158 13.02 0.00 46.06 5.19
196 341 1.825277 ATCCATGGGTGGGGGCTTTT 61.825 55.000 13.02 0.00 46.06 2.27
197 342 2.292559 CCATGGGTGGGGGCTTTTG 61.293 63.158 2.85 0.00 42.11 2.44
198 343 2.122504 ATGGGTGGGGGCTTTTGG 59.877 61.111 0.00 0.00 0.00 3.28
199 344 2.487045 ATGGGTGGGGGCTTTTGGA 61.487 57.895 0.00 0.00 0.00 3.53
200 345 2.283894 GGGTGGGGGCTTTTGGAG 60.284 66.667 0.00 0.00 0.00 3.86
201 346 2.283894 GGTGGGGGCTTTTGGAGG 60.284 66.667 0.00 0.00 0.00 4.30
208 353 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
209 354 2.402572 GCTTTTGGAGGCCGAGCTC 61.403 63.158 2.73 2.73 0.00 4.09
210 355 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
211 356 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
233 378 4.398549 CGGAGCTCGTTTTCAAAATACA 57.601 40.909 7.83 0.00 0.00 2.29
234 379 4.778904 CGGAGCTCGTTTTCAAAATACAA 58.221 39.130 7.83 0.00 0.00 2.41
235 380 5.209240 CGGAGCTCGTTTTCAAAATACAAA 58.791 37.500 7.83 0.00 0.00 2.83
236 381 5.856455 CGGAGCTCGTTTTCAAAATACAAAT 59.144 36.000 7.83 0.00 0.00 2.32
237 382 6.362283 CGGAGCTCGTTTTCAAAATACAAATT 59.638 34.615 7.83 0.00 0.00 1.82
238 383 7.096230 CGGAGCTCGTTTTCAAAATACAAATTT 60.096 33.333 7.83 0.00 36.87 1.82
239 384 8.214472 GGAGCTCGTTTTCAAAATACAAATTTC 58.786 33.333 7.83 0.00 34.12 2.17
240 385 8.072238 AGCTCGTTTTCAAAATACAAATTTCC 57.928 30.769 0.00 0.00 34.12 3.13
241 386 7.708752 AGCTCGTTTTCAAAATACAAATTTCCA 59.291 29.630 0.00 0.00 34.12 3.53
242 387 7.792048 GCTCGTTTTCAAAATACAAATTTCCAC 59.208 33.333 0.00 0.00 34.12 4.02
243 388 8.703604 TCGTTTTCAAAATACAAATTTCCACA 57.296 26.923 0.00 0.00 34.12 4.17
244 389 9.151471 TCGTTTTCAAAATACAAATTTCCACAA 57.849 25.926 0.00 0.00 34.12 3.33
245 390 9.419737 CGTTTTCAAAATACAAATTTCCACAAG 57.580 29.630 0.00 0.00 34.12 3.16
246 391 9.715123 GTTTTCAAAATACAAATTTCCACAAGG 57.285 29.630 0.00 0.00 34.12 3.61
247 392 9.454859 TTTTCAAAATACAAATTTCCACAAGGT 57.545 25.926 0.00 0.00 34.12 3.50
248 393 8.430801 TTCAAAATACAAATTTCCACAAGGTG 57.569 30.769 0.00 0.00 34.12 4.00
249 394 7.786030 TCAAAATACAAATTTCCACAAGGTGA 58.214 30.769 0.00 0.00 34.12 4.02
250 395 8.260818 TCAAAATACAAATTTCCACAAGGTGAA 58.739 29.630 0.00 0.00 34.12 3.18
251 396 8.887717 CAAAATACAAATTTCCACAAGGTGAAA 58.112 29.630 0.00 0.00 34.12 2.69
252 397 9.454859 AAAATACAAATTTCCACAAGGTGAAAA 57.545 25.926 0.00 0.00 34.12 2.29
253 398 9.454859 AAATACAAATTTCCACAAGGTGAAAAA 57.545 25.926 0.00 0.00 30.40 1.94
283 428 9.509855 TGAAATTGTTTGTATACACTTTCACAC 57.490 29.630 4.68 0.00 45.08 3.82
284 429 9.509855 GAAATTGTTTGTATACACTTTCACACA 57.490 29.630 4.68 0.00 42.51 3.72
286 431 9.462174 AATTGTTTGTATACACTTTCACACATG 57.538 29.630 4.68 0.00 0.00 3.21
287 432 7.561021 TGTTTGTATACACTTTCACACATGT 57.439 32.000 4.68 0.00 0.00 3.21
288 433 7.413644 TGTTTGTATACACTTTCACACATGTG 58.586 34.615 24.25 24.25 46.91 3.21
289 434 7.066404 TGTTTGTATACACTTTCACACATGTGT 59.934 33.333 25.76 25.76 45.76 3.72
290 435 8.552865 GTTTGTATACACTTTCACACATGTGTA 58.447 33.333 30.11 14.23 45.77 2.90
294 439 4.858935 ACACTTTCACACATGTGTATTGC 58.141 39.130 30.11 0.00 45.76 3.56
295 440 3.907788 CACTTTCACACATGTGTATTGCG 59.092 43.478 30.11 17.77 45.76 4.85
296 441 3.563808 ACTTTCACACATGTGTATTGCGT 59.436 39.130 30.11 19.39 45.76 5.24
297 442 3.804518 TTCACACATGTGTATTGCGTC 57.195 42.857 30.11 0.00 45.76 5.19
298 443 3.038788 TCACACATGTGTATTGCGTCT 57.961 42.857 30.11 2.37 45.76 4.18
299 444 2.736192 TCACACATGTGTATTGCGTCTG 59.264 45.455 30.11 15.01 45.76 3.51
300 445 2.480037 CACACATGTGTATTGCGTCTGT 59.520 45.455 30.11 1.02 42.83 3.41
301 446 2.480037 ACACATGTGTATTGCGTCTGTG 59.520 45.455 29.66 0.23 42.90 3.66
302 447 1.464608 ACATGTGTATTGCGTCTGTGC 59.535 47.619 0.00 0.00 0.00 4.57
303 448 1.464219 CATGTGTATTGCGTCTGTGCA 59.536 47.619 0.00 0.00 44.61 4.57
311 456 2.859526 TGCGTCTGTGCAAAAATTCA 57.140 40.000 0.00 0.00 43.02 2.57
312 457 3.156511 TGCGTCTGTGCAAAAATTCAA 57.843 38.095 0.00 0.00 43.02 2.69
313 458 3.515630 TGCGTCTGTGCAAAAATTCAAA 58.484 36.364 0.00 0.00 43.02 2.69
314 459 3.928992 TGCGTCTGTGCAAAAATTCAAAA 59.071 34.783 0.00 0.00 43.02 2.44
315 460 4.201666 TGCGTCTGTGCAAAAATTCAAAAC 60.202 37.500 0.00 0.00 43.02 2.43
316 461 4.781883 GCGTCTGTGCAAAAATTCAAAACC 60.782 41.667 0.00 0.00 34.15 3.27
317 462 4.328440 CGTCTGTGCAAAAATTCAAAACCA 59.672 37.500 0.00 0.00 0.00 3.67
318 463 5.163913 CGTCTGTGCAAAAATTCAAAACCAA 60.164 36.000 0.00 0.00 0.00 3.67
319 464 6.606768 GTCTGTGCAAAAATTCAAAACCAAA 58.393 32.000 0.00 0.00 0.00 3.28
320 465 7.249858 GTCTGTGCAAAAATTCAAAACCAAAT 58.750 30.769 0.00 0.00 0.00 2.32
321 466 8.394121 GTCTGTGCAAAAATTCAAAACCAAATA 58.606 29.630 0.00 0.00 0.00 1.40
322 467 8.394121 TCTGTGCAAAAATTCAAAACCAAATAC 58.606 29.630 0.00 0.00 0.00 1.89
323 468 8.273780 TGTGCAAAAATTCAAAACCAAATACT 57.726 26.923 0.00 0.00 0.00 2.12
324 469 8.734386 TGTGCAAAAATTCAAAACCAAATACTT 58.266 25.926 0.00 0.00 0.00 2.24
325 470 9.566530 GTGCAAAAATTCAAAACCAAATACTTT 57.433 25.926 0.00 0.00 0.00 2.66
326 471 9.780413 TGCAAAAATTCAAAACCAAATACTTTC 57.220 25.926 0.00 0.00 0.00 2.62
327 472 9.780413 GCAAAAATTCAAAACCAAATACTTTCA 57.220 25.926 0.00 0.00 0.00 2.69
331 476 7.692908 ATTCAAAACCAAATACTTTCACACG 57.307 32.000 0.00 0.00 0.00 4.49
332 477 6.197364 TCAAAACCAAATACTTTCACACGT 57.803 33.333 0.00 0.00 0.00 4.49
333 478 6.030849 TCAAAACCAAATACTTTCACACGTG 58.969 36.000 15.48 15.48 0.00 4.49
334 479 4.561735 AACCAAATACTTTCACACGTGG 57.438 40.909 21.57 9.11 0.00 4.94
335 480 2.292292 ACCAAATACTTTCACACGTGGC 59.708 45.455 21.57 0.00 0.00 5.01
336 481 2.570169 CAAATACTTTCACACGTGGCG 58.430 47.619 21.57 10.79 0.00 5.69
337 482 1.873698 AATACTTTCACACGTGGCGT 58.126 45.000 21.57 11.01 42.36 5.68
338 483 2.728690 ATACTTTCACACGTGGCGTA 57.271 45.000 21.57 12.75 38.32 4.42
339 484 2.728690 TACTTTCACACGTGGCGTAT 57.271 45.000 21.57 3.12 38.32 3.06
340 485 2.728690 ACTTTCACACGTGGCGTATA 57.271 45.000 21.57 0.00 38.32 1.47
341 486 2.602878 ACTTTCACACGTGGCGTATAG 58.397 47.619 21.57 11.18 38.32 1.31
342 487 2.229543 ACTTTCACACGTGGCGTATAGA 59.770 45.455 21.57 3.06 38.32 1.98
343 488 3.247442 CTTTCACACGTGGCGTATAGAA 58.753 45.455 21.57 8.85 38.32 2.10
344 489 3.300852 TTCACACGTGGCGTATAGAAA 57.699 42.857 21.57 0.00 38.32 2.52
345 490 3.300852 TCACACGTGGCGTATAGAAAA 57.699 42.857 21.57 0.00 38.32 2.29
346 491 3.651206 TCACACGTGGCGTATAGAAAAA 58.349 40.909 21.57 0.00 38.32 1.94
373 518 9.361315 AGACAAAAACGTATTTATAAAATGGGC 57.639 29.630 1.21 0.00 0.00 5.36
374 519 8.481974 ACAAAAACGTATTTATAAAATGGGCC 57.518 30.769 1.21 0.00 0.00 5.80
375 520 8.095169 ACAAAAACGTATTTATAAAATGGGCCA 58.905 29.630 9.61 9.61 0.00 5.36
376 521 8.936864 CAAAAACGTATTTATAAAATGGGCCAA 58.063 29.630 11.89 0.00 0.00 4.52
377 522 9.674068 AAAAACGTATTTATAAAATGGGCCAAT 57.326 25.926 11.89 0.00 0.00 3.16
378 523 9.674068 AAAACGTATTTATAAAATGGGCCAATT 57.326 25.926 11.89 5.35 0.00 2.32
379 524 9.674068 AAACGTATTTATAAAATGGGCCAATTT 57.326 25.926 22.27 22.27 0.00 1.82
380 525 9.674068 AACGTATTTATAAAATGGGCCAATTTT 57.326 25.926 29.43 29.43 41.45 1.82
381 526 9.674068 ACGTATTTATAAAATGGGCCAATTTTT 57.326 25.926 31.17 20.97 39.73 1.94
382 527 9.928236 CGTATTTATAAAATGGGCCAATTTTTG 57.072 29.630 31.17 11.02 39.73 2.44
386 531 8.697507 TTATAAAATGGGCCAATTTTTGTTGT 57.302 26.923 31.17 16.59 39.73 3.32
387 532 5.929058 AAAATGGGCCAATTTTTGTTGTT 57.071 30.435 23.02 1.54 36.56 2.83
388 533 4.915158 AATGGGCCAATTTTTGTTGTTG 57.085 36.364 11.89 0.00 0.00 3.33
389 534 2.648059 TGGGCCAATTTTTGTTGTTGG 58.352 42.857 2.13 0.00 44.06 3.77
390 535 1.952990 GGGCCAATTTTTGTTGTTGGG 59.047 47.619 4.39 0.00 42.05 4.12
391 536 2.772568 GCCAATTTTTGTTGTTGGGC 57.227 45.000 5.61 0.00 42.05 5.36
392 537 1.336440 GCCAATTTTTGTTGTTGGGCC 59.664 47.619 0.00 0.00 42.05 5.80
393 538 1.601430 CCAATTTTTGTTGTTGGGCCG 59.399 47.619 0.00 0.00 38.93 6.13
394 539 1.601430 CAATTTTTGTTGTTGGGCCGG 59.399 47.619 0.00 0.00 0.00 6.13
395 540 1.123928 ATTTTTGTTGTTGGGCCGGA 58.876 45.000 5.05 0.00 0.00 5.14
396 541 1.123928 TTTTTGTTGTTGGGCCGGAT 58.876 45.000 5.05 0.00 0.00 4.18
397 542 1.123928 TTTTGTTGTTGGGCCGGATT 58.876 45.000 5.05 0.00 0.00 3.01
398 543 1.123928 TTTGTTGTTGGGCCGGATTT 58.876 45.000 5.05 0.00 0.00 2.17
399 544 1.123928 TTGTTGTTGGGCCGGATTTT 58.876 45.000 5.05 0.00 0.00 1.82
400 545 1.123928 TGTTGTTGGGCCGGATTTTT 58.876 45.000 5.05 0.00 0.00 1.94
401 546 1.202580 TGTTGTTGGGCCGGATTTTTG 60.203 47.619 5.05 0.00 0.00 2.44
402 547 1.123928 TTGTTGGGCCGGATTTTTGT 58.876 45.000 5.05 0.00 0.00 2.83
403 548 1.123928 TGTTGGGCCGGATTTTTGTT 58.876 45.000 5.05 0.00 0.00 2.83
404 549 1.486726 TGTTGGGCCGGATTTTTGTTT 59.513 42.857 5.05 0.00 0.00 2.83
405 550 2.092914 TGTTGGGCCGGATTTTTGTTTT 60.093 40.909 5.05 0.00 0.00 2.43
406 551 2.946329 GTTGGGCCGGATTTTTGTTTTT 59.054 40.909 5.05 0.00 0.00 1.94
427 572 6.701145 TTTTTGTACAGCCTACAAATCACA 57.299 33.333 14.83 2.05 44.00 3.58
428 573 5.682943 TTTGTACAGCCTACAAATCACAC 57.317 39.130 11.51 0.00 41.00 3.82
433 578 4.151883 ACAGCCTACAAATCACACCAAAT 58.848 39.130 0.00 0.00 0.00 2.32
435 580 5.163513 CAGCCTACAAATCACACCAAATTC 58.836 41.667 0.00 0.00 0.00 2.17
458 603 9.887406 ATTCAAATAATTTTCTTACACGTTCGT 57.113 25.926 0.00 0.00 0.00 3.85
459 604 8.702408 TCAAATAATTTTCTTACACGTTCGTG 57.298 30.769 21.13 21.13 41.47 4.35
460 605 7.321746 TCAAATAATTTTCTTACACGTTCGTGC 59.678 33.333 22.35 0.00 39.53 5.34
461 606 2.631663 TTTTCTTACACGTTCGTGCG 57.368 45.000 22.35 12.64 39.53 5.34
463 608 0.030504 TTCTTACACGTTCGTGCGGA 59.969 50.000 22.35 15.29 39.53 5.54
464 609 0.030504 TCTTACACGTTCGTGCGGAA 59.969 50.000 22.35 13.97 39.53 4.30
465 610 0.854062 CTTACACGTTCGTGCGGAAA 59.146 50.000 22.35 12.08 39.53 3.13
466 611 1.458064 CTTACACGTTCGTGCGGAAAT 59.542 47.619 22.35 7.10 39.53 2.17
467 612 1.062258 TACACGTTCGTGCGGAAATC 58.938 50.000 22.35 0.00 39.53 2.17
468 613 0.599204 ACACGTTCGTGCGGAAATCT 60.599 50.000 22.35 0.77 39.53 2.40
469 614 1.336148 ACACGTTCGTGCGGAAATCTA 60.336 47.619 22.35 0.00 39.53 1.98
470 615 1.924524 CACGTTCGTGCGGAAATCTAT 59.075 47.619 12.19 0.00 36.14 1.98
471 616 2.347452 CACGTTCGTGCGGAAATCTATT 59.653 45.455 12.19 0.00 36.14 1.73
472 617 3.548668 CACGTTCGTGCGGAAATCTATTA 59.451 43.478 12.19 0.00 36.14 0.98
473 618 4.031991 CACGTTCGTGCGGAAATCTATTAA 59.968 41.667 12.19 0.00 36.14 1.40
474 619 4.266976 ACGTTCGTGCGGAAATCTATTAAG 59.733 41.667 0.00 0.00 36.14 1.85
475 620 4.266976 CGTTCGTGCGGAAATCTATTAAGT 59.733 41.667 0.00 0.00 36.14 2.24
476 621 5.220340 CGTTCGTGCGGAAATCTATTAAGTT 60.220 40.000 0.00 0.00 36.14 2.66
477 622 6.020440 CGTTCGTGCGGAAATCTATTAAGTTA 60.020 38.462 0.00 0.00 36.14 2.24
478 623 6.817270 TCGTGCGGAAATCTATTAAGTTAC 57.183 37.500 0.00 0.00 0.00 2.50
479 624 5.750067 TCGTGCGGAAATCTATTAAGTTACC 59.250 40.000 0.00 0.00 0.00 2.85
480 625 5.332055 CGTGCGGAAATCTATTAAGTTACCG 60.332 44.000 0.00 0.00 40.60 4.02
481 626 5.521372 GTGCGGAAATCTATTAAGTTACCGT 59.479 40.000 0.00 0.00 39.95 4.83
482 627 5.521010 TGCGGAAATCTATTAAGTTACCGTG 59.479 40.000 0.00 0.00 39.95 4.94
483 628 5.050567 GCGGAAATCTATTAAGTTACCGTGG 60.051 44.000 0.00 0.00 39.95 4.94
484 629 6.275335 CGGAAATCTATTAAGTTACCGTGGA 58.725 40.000 0.00 0.00 34.39 4.02
485 630 6.927381 CGGAAATCTATTAAGTTACCGTGGAT 59.073 38.462 0.00 0.00 34.39 3.41
486 631 7.440255 CGGAAATCTATTAAGTTACCGTGGATT 59.560 37.037 0.00 0.00 34.39 3.01
487 632 9.117183 GGAAATCTATTAAGTTACCGTGGATTT 57.883 33.333 10.56 10.56 34.82 2.17
553 698 5.964958 TTTTCAAAATACTGAGCTCCCTG 57.035 39.130 12.15 4.07 0.00 4.45
554 699 3.634397 TCAAAATACTGAGCTCCCTGG 57.366 47.619 12.15 1.44 0.00 4.45
555 700 3.181329 TCAAAATACTGAGCTCCCTGGA 58.819 45.455 12.15 0.00 0.00 3.86
556 701 3.198635 TCAAAATACTGAGCTCCCTGGAG 59.801 47.826 12.15 8.91 44.56 3.86
564 709 3.013932 CTCCCTGGAGCTTGGCCT 61.014 66.667 3.32 0.00 35.31 5.19
565 710 3.011517 TCCCTGGAGCTTGGCCTC 61.012 66.667 3.32 0.00 0.00 4.70
570 715 2.747855 GGAGCTTGGCCTCCGTTG 60.748 66.667 3.32 0.00 41.79 4.10
571 716 2.747855 GAGCTTGGCCTCCGTTGG 60.748 66.667 3.32 0.00 0.00 3.77
580 725 1.506262 CCTCCGTTGGCATTTTCCG 59.494 57.895 0.00 0.00 0.00 4.30
581 726 1.506262 CTCCGTTGGCATTTTCCGG 59.494 57.895 0.00 0.00 39.98 5.14
582 727 2.126110 CCGTTGGCATTTTCCGGC 60.126 61.111 0.00 0.00 0.00 6.13
588 733 2.341452 GGCATTTTCCGGCCTATCC 58.659 57.895 0.00 0.00 46.74 2.59
589 734 0.467290 GGCATTTTCCGGCCTATCCA 60.467 55.000 0.00 0.00 46.74 3.41
590 735 1.620822 GCATTTTCCGGCCTATCCAT 58.379 50.000 0.00 0.00 34.01 3.41
591 736 1.270550 GCATTTTCCGGCCTATCCATG 59.729 52.381 0.00 0.00 34.01 3.66
592 737 1.270550 CATTTTCCGGCCTATCCATGC 59.729 52.381 0.00 0.00 34.01 4.06
593 738 0.257328 TTTTCCGGCCTATCCATGCA 59.743 50.000 0.00 0.00 34.01 3.96
594 739 0.465460 TTTCCGGCCTATCCATGCAC 60.465 55.000 0.00 0.00 34.01 4.57
595 740 1.344953 TTCCGGCCTATCCATGCACT 61.345 55.000 0.00 0.00 34.01 4.40
596 741 1.149174 CCGGCCTATCCATGCACTT 59.851 57.895 0.00 0.00 34.01 3.16
597 742 0.886490 CCGGCCTATCCATGCACTTC 60.886 60.000 0.00 0.00 34.01 3.01
598 743 0.107456 CGGCCTATCCATGCACTTCT 59.893 55.000 0.00 0.00 34.01 2.85
599 744 1.875576 CGGCCTATCCATGCACTTCTC 60.876 57.143 0.00 0.00 34.01 2.87
600 745 1.419387 GGCCTATCCATGCACTTCTCT 59.581 52.381 0.00 0.00 34.01 3.10
642 792 5.865085 TGCTAGCTTGGTAAAAGAAGAAGA 58.135 37.500 17.23 0.00 0.00 2.87
646 796 5.437060 AGCTTGGTAAAAGAAGAAGACACA 58.563 37.500 0.00 0.00 0.00 3.72
669 821 3.127895 ACTCATACAAGAGAGACGCTGAC 59.872 47.826 0.00 0.00 38.98 3.51
680 832 3.446873 AGAGACGCTGACAAGAGATGAAT 59.553 43.478 0.00 0.00 0.00 2.57
798 950 5.063438 TCTGCACTTTATGTTATCTTCGTGC 59.937 40.000 0.00 0.00 44.75 5.34
805 960 0.921347 GTTATCTTCGTGCGATGCGT 59.079 50.000 0.00 0.00 0.00 5.24
831 986 5.064198 TCGGTCGTCATTTTGTCCATTTATC 59.936 40.000 0.00 0.00 0.00 1.75
878 1033 5.521735 CACAGGAGCACTAGTATTTAAGCTG 59.478 44.000 7.78 0.00 31.61 4.24
894 1049 1.407258 AGCTGATGAGTAGAACTCCGC 59.593 52.381 4.69 3.03 44.44 5.54
911 1066 1.172180 CGCAGAAGAAAGCAACCCCA 61.172 55.000 0.00 0.00 0.00 4.96
980 1136 4.568152 TTCGAAAAAGAAGAAAGCCAGG 57.432 40.909 0.00 0.00 0.00 4.45
1008 1167 6.405278 TTTTAGATCTCACTCATGGCGATA 57.595 37.500 0.00 0.00 0.00 2.92
1039 1198 0.179000 CTTGACCTCCGGATCCTTGG 59.821 60.000 3.57 4.54 0.00 3.61
1203 1363 3.129813 AGTGAGTGTACTGACGTTGTGAA 59.870 43.478 0.00 0.00 35.20 3.18
1204 1364 3.486108 GTGAGTGTACTGACGTTGTGAAG 59.514 47.826 0.00 0.00 0.00 3.02
1266 1426 7.333423 TGGCAGTATCTTACAAGATTGTTACAC 59.667 37.037 9.63 1.81 42.96 2.90
1268 1428 8.883731 GCAGTATCTTACAAGATTGTTACACAT 58.116 33.333 9.63 0.00 42.96 3.21
1273 1433 9.671279 ATCTTACAAGATTGTTACACATGATGA 57.329 29.630 0.00 0.00 42.96 2.92
1274 1434 8.935844 TCTTACAAGATTGTTACACATGATGAC 58.064 33.333 0.00 0.00 42.35 3.06
1275 1435 8.614469 TTACAAGATTGTTACACATGATGACA 57.386 30.769 0.00 0.00 42.35 3.58
1323 1483 3.793144 CGCAGCCGGTTCAAGCTC 61.793 66.667 1.90 0.00 37.18 4.09
1327 1487 1.915769 AGCCGGTTCAAGCTCCTCT 60.916 57.895 1.90 0.00 32.71 3.69
1383 1543 1.359848 GTGCCTTCATGGTGAGTACG 58.640 55.000 0.00 0.00 38.35 3.67
1403 1565 4.563061 ACGGAAGTGTTAACATGTACTCC 58.437 43.478 12.26 11.73 46.97 3.85
1404 1566 3.930848 CGGAAGTGTTAACATGTACTCCC 59.069 47.826 12.26 0.18 0.00 4.30
1405 1567 4.322499 CGGAAGTGTTAACATGTACTCCCT 60.322 45.833 12.26 0.00 0.00 4.20
1406 1568 5.557866 GGAAGTGTTAACATGTACTCCCTT 58.442 41.667 12.26 7.50 0.00 3.95
1407 1569 5.642491 GGAAGTGTTAACATGTACTCCCTTC 59.358 44.000 12.26 15.22 0.00 3.46
1408 1570 4.817517 AGTGTTAACATGTACTCCCTTCG 58.182 43.478 12.26 0.00 0.00 3.79
1409 1571 4.282703 AGTGTTAACATGTACTCCCTTCGT 59.717 41.667 12.26 0.00 0.00 3.85
1410 1572 4.624452 GTGTTAACATGTACTCCCTTCGTC 59.376 45.833 12.26 0.00 0.00 4.20
1411 1573 4.179298 GTTAACATGTACTCCCTTCGTCC 58.821 47.826 0.00 0.00 0.00 4.79
1412 1574 1.192428 ACATGTACTCCCTTCGTCCC 58.808 55.000 0.00 0.00 0.00 4.46
1413 1575 1.191535 CATGTACTCCCTTCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
1414 1576 1.762957 CATGTACTCCCTTCGTCCCAT 59.237 52.381 0.00 0.00 0.00 4.00
1415 1577 2.832643 TGTACTCCCTTCGTCCCATA 57.167 50.000 0.00 0.00 0.00 2.74
1416 1578 3.104519 TGTACTCCCTTCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
1417 1579 3.649843 TGTACTCCCTTCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
1418 1580 4.806892 TGTACTCCCTTCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
1419 1581 5.399991 TGTACTCCCTTCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
1420 1582 6.554784 TGTACTCCCTTCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
1421 1583 7.011994 TGTACTCCCTTCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
1422 1584 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
1423 1585 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
1424 1586 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1425 1587 5.187186 TCCCTTCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
1426 1588 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
1427 1589 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
1428 1590 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
1429 1591 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
1430 1592 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
1431 1593 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
1432 1594 7.042321 TCGTCCCATAATATAAGAGCGTTTTTG 60.042 37.037 0.00 0.00 0.00 2.44
1433 1595 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
1434 1596 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
1435 1597 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1436 1598 8.070171 CCCATAATATAAGAGCGTTTTTGACAG 58.930 37.037 0.00 0.00 0.00 3.51
1437 1599 8.612619 CCATAATATAAGAGCGTTTTTGACAGT 58.387 33.333 0.00 0.00 0.00 3.55
1440 1602 3.854286 AAGAGCGTTTTTGACAGTACG 57.146 42.857 0.00 0.00 37.09 3.67
1441 1603 3.088194 AGAGCGTTTTTGACAGTACGA 57.912 42.857 9.38 0.00 36.16 3.43
1442 1604 3.050619 AGAGCGTTTTTGACAGTACGAG 58.949 45.455 9.38 0.00 36.16 4.18
1443 1605 2.793232 GAGCGTTTTTGACAGTACGAGT 59.207 45.455 9.38 0.00 36.16 4.18
1444 1606 3.968649 AGCGTTTTTGACAGTACGAGTA 58.031 40.909 9.38 0.00 36.16 2.59
1445 1607 3.732721 AGCGTTTTTGACAGTACGAGTAC 59.267 43.478 5.32 5.32 36.16 2.73
1446 1608 3.732721 GCGTTTTTGACAGTACGAGTACT 59.267 43.478 9.88 9.88 46.52 2.73
1447 1609 4.911610 GCGTTTTTGACAGTACGAGTACTA 59.088 41.667 14.68 0.00 43.98 1.82
1448 1610 5.164244 GCGTTTTTGACAGTACGAGTACTAC 60.164 44.000 14.68 12.25 43.98 2.73
1449 1611 5.340667 CGTTTTTGACAGTACGAGTACTACC 59.659 44.000 14.68 10.28 43.98 3.18
1465 1627 7.466996 CGAGTACTACCGTATTTCTGAATCTGT 60.467 40.741 0.00 0.00 0.00 3.41
1500 1662 1.540267 ACACATTGACGAGCTACGAGT 59.460 47.619 11.64 0.00 45.77 4.18
1515 1677 2.040178 ACGAGTTTCTCAGGGTCAAGT 58.960 47.619 0.00 0.00 0.00 3.16
1526 1688 2.668280 GGTCAAGTTGCTCGTCGGC 61.668 63.158 0.00 0.00 0.00 5.54
1538 1700 2.022129 CGTCGGCGTCTTCTTTGCT 61.022 57.895 6.85 0.00 0.00 3.91
1544 1706 0.385223 GCGTCTTCTTTGCTGCAGTG 60.385 55.000 16.64 3.80 0.00 3.66
1595 1757 6.772716 TGGAAGGTAAATCCAAATCAGATAGC 59.227 38.462 0.00 0.00 43.84 2.97
1596 1758 7.001073 GGAAGGTAAATCCAAATCAGATAGCT 58.999 38.462 0.00 0.00 39.02 3.32
1597 1759 7.503902 GGAAGGTAAATCCAAATCAGATAGCTT 59.496 37.037 0.00 0.00 39.02 3.74
1598 1760 8.829373 AAGGTAAATCCAAATCAGATAGCTTT 57.171 30.769 0.00 0.00 39.02 3.51
1599 1761 9.920946 AAGGTAAATCCAAATCAGATAGCTTTA 57.079 29.630 0.00 0.00 39.02 1.85
1600 1762 9.343539 AGGTAAATCCAAATCAGATAGCTTTAC 57.656 33.333 0.00 0.00 39.02 2.01
1601 1763 8.568794 GGTAAATCCAAATCAGATAGCTTTACC 58.431 37.037 12.92 12.92 31.34 2.85
1602 1764 9.120538 GTAAATCCAAATCAGATAGCTTTACCA 57.879 33.333 0.00 0.00 0.00 3.25
1603 1765 7.573968 AATCCAAATCAGATAGCTTTACCAC 57.426 36.000 0.00 0.00 0.00 4.16
1604 1766 5.437060 TCCAAATCAGATAGCTTTACCACC 58.563 41.667 0.00 0.00 0.00 4.61
1605 1767 5.191722 TCCAAATCAGATAGCTTTACCACCT 59.808 40.000 0.00 0.00 0.00 4.00
1606 1768 5.297776 CCAAATCAGATAGCTTTACCACCTG 59.702 44.000 0.00 0.00 0.00 4.00
1607 1769 5.957771 AATCAGATAGCTTTACCACCTGA 57.042 39.130 0.00 0.00 34.29 3.86
1608 1770 6.506538 AATCAGATAGCTTTACCACCTGAT 57.493 37.500 0.00 0.00 40.39 2.90
1609 1771 5.282055 TCAGATAGCTTTACCACCTGATG 57.718 43.478 0.00 0.00 0.00 3.07
1610 1772 3.812053 CAGATAGCTTTACCACCTGATGC 59.188 47.826 0.00 0.00 0.00 3.91
1611 1773 3.713764 AGATAGCTTTACCACCTGATGCT 59.286 43.478 0.00 0.00 0.00 3.79
1612 1774 2.409948 AGCTTTACCACCTGATGCTC 57.590 50.000 0.00 0.00 0.00 4.26
1613 1775 1.009829 GCTTTACCACCTGATGCTCG 58.990 55.000 0.00 0.00 0.00 5.03
1614 1776 1.676014 GCTTTACCACCTGATGCTCGT 60.676 52.381 0.00 0.00 0.00 4.18
1615 1777 2.002586 CTTTACCACCTGATGCTCGTG 58.997 52.381 0.00 0.00 0.00 4.35
1616 1778 1.262417 TTACCACCTGATGCTCGTGA 58.738 50.000 0.00 0.00 0.00 4.35
1641 1803 5.522824 GCTACTACCTTTTCCATTAGTTCCG 59.477 44.000 0.00 0.00 0.00 4.30
1649 1811 6.128363 CCTTTTCCATTAGTTCCGTAACAGAC 60.128 42.308 0.00 0.00 38.12 3.51
1680 1979 2.969950 TCCCACGAGAAAGGAAAAGAGA 59.030 45.455 0.00 0.00 0.00 3.10
1681 1980 3.389983 TCCCACGAGAAAGGAAAAGAGAA 59.610 43.478 0.00 0.00 0.00 2.87
1731 2043 1.178276 ACTACCGTCCAGAGAGCAAG 58.822 55.000 0.00 0.00 0.00 4.01
1737 2049 1.000283 CGTCCAGAGAGCAAGACAACT 60.000 52.381 0.00 0.00 0.00 3.16
1769 2081 4.948004 TCTGCGAATCAGGTACCGATATAT 59.052 41.667 16.27 4.93 43.06 0.86
1788 2237 0.251922 TTACCAGGTGCTACCGTCCT 60.252 55.000 0.76 0.00 44.90 3.85
1836 2285 1.237285 GCCTTCTGCACCACATTCGT 61.237 55.000 0.00 0.00 40.77 3.85
1899 2366 2.830923 CCTATCAGGAGGAGCACATAGG 59.169 54.545 0.00 0.00 37.67 2.57
1903 2370 0.031716 AGGAGGAGCACATAGGCAGA 60.032 55.000 0.00 0.00 35.83 4.26
1920 2387 3.392882 GCAGAACCATTTTCAAAGGTGG 58.607 45.455 2.84 2.84 35.42 4.61
1936 2403 3.361977 GGGCAAACCACGCGATGT 61.362 61.111 15.93 6.23 39.85 3.06
1979 2447 4.521146 ACAATTCCAGATCACCTAGCAAG 58.479 43.478 0.00 0.00 0.00 4.01
2056 2926 2.038557 TGCCACAAGGAGTTAGGAGTTC 59.961 50.000 0.00 0.00 36.89 3.01
2096 4311 4.472470 TCAAGAGTGATCTGATCCCACAAT 59.528 41.667 14.71 0.00 33.53 2.71
2097 4312 5.662657 TCAAGAGTGATCTGATCCCACAATA 59.337 40.000 14.71 0.00 33.53 1.90
2098 4313 5.543507 AGAGTGATCTGATCCCACAATAC 57.456 43.478 14.71 4.80 33.53 1.89
2099 4314 4.346418 AGAGTGATCTGATCCCACAATACC 59.654 45.833 14.71 0.49 33.53 2.73
2100 4315 4.302067 AGTGATCTGATCCCACAATACCT 58.698 43.478 14.71 0.00 33.53 3.08
2101 4316 4.346418 AGTGATCTGATCCCACAATACCTC 59.654 45.833 14.71 0.00 33.53 3.85
2102 4317 4.101585 GTGATCTGATCCCACAATACCTCA 59.898 45.833 14.71 0.00 0.00 3.86
2103 4318 4.101585 TGATCTGATCCCACAATACCTCAC 59.898 45.833 14.71 0.00 0.00 3.51
2104 4319 3.449918 TCTGATCCCACAATACCTCACA 58.550 45.455 0.00 0.00 0.00 3.58
2105 4320 3.197766 TCTGATCCCACAATACCTCACAC 59.802 47.826 0.00 0.00 0.00 3.82
2106 4321 3.181329 TGATCCCACAATACCTCACACT 58.819 45.455 0.00 0.00 0.00 3.55
2107 4322 4.358214 TGATCCCACAATACCTCACACTA 58.642 43.478 0.00 0.00 0.00 2.74
2108 4323 4.161565 TGATCCCACAATACCTCACACTAC 59.838 45.833 0.00 0.00 0.00 2.73
2109 4324 2.835764 TCCCACAATACCTCACACTACC 59.164 50.000 0.00 0.00 0.00 3.18
2110 4325 2.093128 CCCACAATACCTCACACTACCC 60.093 54.545 0.00 0.00 0.00 3.69
2111 4326 2.838202 CCACAATACCTCACACTACCCT 59.162 50.000 0.00 0.00 0.00 4.34
2112 4327 4.028131 CCACAATACCTCACACTACCCTA 58.972 47.826 0.00 0.00 0.00 3.53
2113 4328 4.099573 CCACAATACCTCACACTACCCTAG 59.900 50.000 0.00 0.00 0.00 3.02
2114 4329 4.954202 CACAATACCTCACACTACCCTAGA 59.046 45.833 0.00 0.00 0.00 2.43
2115 4330 4.954826 ACAATACCTCACACTACCCTAGAC 59.045 45.833 0.00 0.00 0.00 2.59
2116 4331 2.125773 ACCTCACACTACCCTAGACG 57.874 55.000 0.00 0.00 0.00 4.18
2117 4332 1.353694 ACCTCACACTACCCTAGACGT 59.646 52.381 0.00 0.00 0.00 4.34
2118 4333 2.015587 CCTCACACTACCCTAGACGTC 58.984 57.143 7.70 7.70 0.00 4.34
2119 4334 2.617276 CCTCACACTACCCTAGACGTCA 60.617 54.545 19.50 2.84 0.00 4.35
2120 4335 2.678836 CTCACACTACCCTAGACGTCAG 59.321 54.545 19.50 12.61 0.00 3.51
2121 4336 1.743958 CACACTACCCTAGACGTCAGG 59.256 57.143 19.50 20.21 0.00 3.86
2122 4337 0.739561 CACTACCCTAGACGTCAGGC 59.260 60.000 19.50 0.00 0.00 4.85
2124 4339 0.463295 CTACCCTAGACGTCAGGCGA 60.463 60.000 19.50 10.95 44.77 5.54
2125 4340 0.463295 TACCCTAGACGTCAGGCGAG 60.463 60.000 19.50 11.56 44.77 5.03
2126 4341 1.749638 CCCTAGACGTCAGGCGAGT 60.750 63.158 19.50 0.00 44.77 4.18
2127 4342 0.463295 CCCTAGACGTCAGGCGAGTA 60.463 60.000 19.50 0.00 44.77 2.59
2128 4343 1.376543 CCTAGACGTCAGGCGAGTAA 58.623 55.000 19.50 0.00 44.77 2.24
2129 4344 1.741706 CCTAGACGTCAGGCGAGTAAA 59.258 52.381 19.50 0.00 44.77 2.01
2130 4345 2.163010 CCTAGACGTCAGGCGAGTAAAA 59.837 50.000 19.50 0.00 44.77 1.52
2131 4346 2.349297 AGACGTCAGGCGAGTAAAAG 57.651 50.000 19.50 0.00 44.77 2.27
2132 4347 1.067776 AGACGTCAGGCGAGTAAAAGG 60.068 52.381 19.50 0.00 44.77 3.11
2133 4348 0.037605 ACGTCAGGCGAGTAAAAGGG 60.038 55.000 0.00 0.00 44.77 3.95
2134 4349 0.037605 CGTCAGGCGAGTAAAAGGGT 60.038 55.000 0.00 0.00 44.77 4.34
2135 4350 1.607251 CGTCAGGCGAGTAAAAGGGTT 60.607 52.381 0.00 0.00 44.77 4.11
2136 4351 2.353011 CGTCAGGCGAGTAAAAGGGTTA 60.353 50.000 0.00 0.00 44.77 2.85
2152 4367 2.148768 GGTTACCCTTTCTCACAACGG 58.851 52.381 0.00 0.00 0.00 4.44
2161 4376 4.202010 CCTTTCTCACAACGGTCACAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
2179 4394 5.163416 ACAAAATCACAAAAAGGAGACCCTG 60.163 40.000 0.00 0.00 43.48 4.45
2181 4396 1.144913 TCACAAAAAGGAGACCCTGGG 59.855 52.381 12.28 12.28 43.48 4.45
2232 4447 8.737168 TCATCAGGACAAAATTTAGATACAGG 57.263 34.615 0.00 0.00 0.00 4.00
2319 4535 4.377841 CCTCACGAACTCATGAAAAGCTTC 60.378 45.833 0.00 0.00 0.00 3.86
2478 4699 9.672673 ACAGTAACAGTGCTCTGAAAATAATAT 57.327 29.630 21.96 0.00 43.76 1.28
2717 4974 3.686241 CAGATGAAATTGAGAAGGACGCA 59.314 43.478 0.00 0.00 0.00 5.24
2851 5271 8.840833 TTTTAAAGGGAAAATCTTAATGCACC 57.159 30.769 0.00 0.00 0.00 5.01
3089 5511 6.048509 GGAGAGATCATTGAGAAAGAACTCC 58.951 44.000 0.00 0.00 36.22 3.85
3108 5530 1.087501 CGTGAGAGGAGACGATGTCA 58.912 55.000 0.00 0.00 37.81 3.58
3217 5724 3.871594 CCCTGTTTAAGATCATCACGGAC 59.128 47.826 0.00 0.00 0.00 4.79
3258 5765 8.711457 CATTTCATAGAAACCAAACCAATGTTC 58.289 33.333 0.00 0.00 32.15 3.18
3300 5807 7.412672 GCTTATCCGACTTTGAACTATTTTCGT 60.413 37.037 0.00 0.00 0.00 3.85
3362 5889 2.423538 GGACGAAATGGTTAGCTGCAAT 59.576 45.455 1.02 0.00 0.00 3.56
3365 5892 3.119849 ACGAAATGGTTAGCTGCAATGTC 60.120 43.478 1.02 0.00 0.00 3.06
3367 5894 4.418392 GAAATGGTTAGCTGCAATGTCTG 58.582 43.478 1.02 0.00 0.00 3.51
3368 5895 2.566833 TGGTTAGCTGCAATGTCTGT 57.433 45.000 1.02 0.00 0.00 3.41
3369 5896 2.862541 TGGTTAGCTGCAATGTCTGTT 58.137 42.857 1.02 0.00 0.00 3.16
3370 5897 2.813754 TGGTTAGCTGCAATGTCTGTTC 59.186 45.455 1.02 0.00 0.00 3.18
3371 5898 3.077359 GGTTAGCTGCAATGTCTGTTCT 58.923 45.455 1.02 0.00 0.00 3.01
3372 5899 3.503748 GGTTAGCTGCAATGTCTGTTCTT 59.496 43.478 1.02 0.00 0.00 2.52
3373 5900 4.022849 GGTTAGCTGCAATGTCTGTTCTTT 60.023 41.667 1.02 0.00 0.00 2.52
3374 5901 3.637998 AGCTGCAATGTCTGTTCTTTG 57.362 42.857 1.02 0.00 0.00 2.77
3375 5902 3.216800 AGCTGCAATGTCTGTTCTTTGA 58.783 40.909 1.02 0.00 0.00 2.69
3376 5903 3.825014 AGCTGCAATGTCTGTTCTTTGAT 59.175 39.130 1.02 0.00 0.00 2.57
3377 5904 4.082895 AGCTGCAATGTCTGTTCTTTGATC 60.083 41.667 1.02 0.00 0.00 2.92
3378 5905 4.320714 GCTGCAATGTCTGTTCTTTGATCA 60.321 41.667 0.00 0.00 0.00 2.92
3379 5906 5.366829 TGCAATGTCTGTTCTTTGATCAG 57.633 39.130 0.00 0.00 32.50 2.90
3380 5907 5.065235 TGCAATGTCTGTTCTTTGATCAGA 58.935 37.500 0.00 4.74 36.45 3.27
3381 5908 5.532032 TGCAATGTCTGTTCTTTGATCAGAA 59.468 36.000 9.15 0.00 39.22 3.02
3382 5909 6.039605 TGCAATGTCTGTTCTTTGATCAGAAA 59.960 34.615 9.15 5.71 39.22 2.52
3383 5910 6.581542 GCAATGTCTGTTCTTTGATCAGAAAG 59.418 38.462 9.15 0.00 39.22 2.62
3384 5911 5.679734 TGTCTGTTCTTTGATCAGAAAGC 57.320 39.130 9.15 1.01 39.22 3.51
3385 5912 4.212004 TGTCTGTTCTTTGATCAGAAAGCG 59.788 41.667 9.15 0.00 39.22 4.68
3386 5913 4.212214 GTCTGTTCTTTGATCAGAAAGCGT 59.788 41.667 9.15 0.00 39.22 5.07
3387 5914 4.449068 TCTGTTCTTTGATCAGAAAGCGTC 59.551 41.667 0.00 0.00 36.04 5.19
3388 5915 3.184379 TGTTCTTTGATCAGAAAGCGTCG 59.816 43.478 0.00 0.00 34.50 5.12
3389 5916 1.726791 TCTTTGATCAGAAAGCGTCGC 59.273 47.619 9.80 9.80 33.63 5.19
3390 5917 1.460743 CTTTGATCAGAAAGCGTCGCA 59.539 47.619 21.09 0.00 0.00 5.10
3391 5918 1.725641 TTGATCAGAAAGCGTCGCAT 58.274 45.000 21.09 4.04 0.00 4.73
3421 5948 2.097825 GGTCTTGCATCCATCAAAGCT 58.902 47.619 0.00 0.00 0.00 3.74
3446 5973 3.243771 CCGAGGAACAGTCTACACTTGTT 60.244 47.826 0.00 0.00 30.90 2.83
3520 6047 3.769844 CTCTAGCCACTCCTTTGGTAGAA 59.230 47.826 0.00 0.00 39.09 2.10
3566 6093 7.012610 CCACTTGATCATGTGCAAATGAGTATA 59.987 37.037 27.90 8.10 39.84 1.47
3569 6096 9.961265 CTTGATCATGTGCAAATGAGTATATTT 57.039 29.630 23.50 6.17 39.84 1.40
3863 6436 6.014242 TGGTGATATCCATTCCTCATGTCTAC 60.014 42.308 0.00 0.00 31.96 2.59
3879 6452 7.110155 TCATGTCTACCTTGGAAAATACTTCC 58.890 38.462 0.00 0.00 39.03 3.46
4046 6619 5.012328 AGGACTGCAACTAAGCTGTATAC 57.988 43.478 0.00 0.00 45.03 1.47
4053 6626 4.094442 GCAACTAAGCTGTATACCACCAAC 59.906 45.833 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.548057 ACGTGTCTGTTACAAATGGCTG 59.452 45.455 0.00 0.00 40.63 4.85
9 10 4.053295 GCTCCTTACGTGTCTGTTACAAA 58.947 43.478 0.00 0.00 40.63 2.83
70 71 2.149578 ACATGTTTGTCAGAGCTGAGC 58.850 47.619 0.00 0.00 40.75 4.26
71 72 4.993584 AGTAACATGTTTGTCAGAGCTGAG 59.006 41.667 17.78 0.00 40.75 3.35
73 74 4.751600 TGAGTAACATGTTTGTCAGAGCTG 59.248 41.667 17.78 0.00 34.06 4.24
109 142 1.472480 GCAGTGTACCATCGGCAAAAT 59.528 47.619 0.00 0.00 0.00 1.82
117 150 1.470098 CTTTGCAGGCAGTGTACCATC 59.530 52.381 0.00 0.00 0.00 3.51
146 291 1.378762 CGAGGGGGAGAGGCAAAAA 59.621 57.895 0.00 0.00 0.00 1.94
180 325 2.292559 CCAAAAGCCCCCACCCATG 61.293 63.158 0.00 0.00 0.00 3.66
181 326 2.122504 CCAAAAGCCCCCACCCAT 59.877 61.111 0.00 0.00 0.00 4.00
182 327 3.113477 TCCAAAAGCCCCCACCCA 61.113 61.111 0.00 0.00 0.00 4.51
183 328 2.283894 CTCCAAAAGCCCCCACCC 60.284 66.667 0.00 0.00 0.00 4.61
185 330 2.997315 GCCTCCAAAAGCCCCCAC 60.997 66.667 0.00 0.00 0.00 4.61
191 336 2.360475 AGCTCGGCCTCCAAAAGC 60.360 61.111 0.00 0.00 0.00 3.51
192 337 3.896479 GAGCTCGGCCTCCAAAAG 58.104 61.111 0.00 0.00 0.00 2.27
212 357 4.398549 TGTATTTTGAAAACGAGCTCCG 57.601 40.909 8.47 6.07 45.44 4.63
214 359 8.214472 GGAAATTTGTATTTTGAAAACGAGCTC 58.786 33.333 2.73 2.73 34.16 4.09
215 360 7.708752 TGGAAATTTGTATTTTGAAAACGAGCT 59.291 29.630 0.00 0.00 34.16 4.09
216 361 7.792048 GTGGAAATTTGTATTTTGAAAACGAGC 59.208 33.333 0.00 0.00 34.16 5.03
218 363 8.703604 TGTGGAAATTTGTATTTTGAAAACGA 57.296 26.923 0.00 0.00 34.16 3.85
219 364 9.419737 CTTGTGGAAATTTGTATTTTGAAAACG 57.580 29.630 0.00 0.00 34.16 3.60
220 365 9.715123 CCTTGTGGAAATTTGTATTTTGAAAAC 57.285 29.630 0.00 0.00 34.16 2.43
222 367 8.887717 CACCTTGTGGAAATTTGTATTTTGAAA 58.112 29.630 0.00 0.00 34.16 2.69
223 368 8.260818 TCACCTTGTGGAAATTTGTATTTTGAA 58.739 29.630 0.00 0.00 37.04 2.69
224 369 7.786030 TCACCTTGTGGAAATTTGTATTTTGA 58.214 30.769 0.00 0.00 37.04 2.69
225 370 8.430801 TTCACCTTGTGGAAATTTGTATTTTG 57.569 30.769 0.00 0.00 37.04 2.44
226 371 9.454859 TTTTCACCTTGTGGAAATTTGTATTTT 57.545 25.926 0.00 0.00 36.27 1.82
227 372 9.454859 TTTTTCACCTTGTGGAAATTTGTATTT 57.545 25.926 0.00 0.00 40.21 1.40
260 405 9.462174 CATGTGTGAAAGTGTATACAAACAATT 57.538 29.630 7.25 0.00 39.18 2.32
261 406 8.629158 ACATGTGTGAAAGTGTATACAAACAAT 58.371 29.630 7.25 0.00 34.79 2.71
262 407 7.990917 ACATGTGTGAAAGTGTATACAAACAA 58.009 30.769 7.25 0.94 34.79 2.83
263 408 7.561021 ACATGTGTGAAAGTGTATACAAACA 57.439 32.000 7.25 5.02 35.43 2.83
280 425 2.480037 CACAGACGCAATACACATGTGT 59.520 45.455 32.47 32.47 46.87 3.72
281 426 2.725759 GCACAGACGCAATACACATGTG 60.726 50.000 24.25 24.25 39.55 3.21
282 427 1.464608 GCACAGACGCAATACACATGT 59.535 47.619 0.00 0.00 0.00 3.21
283 428 1.464219 TGCACAGACGCAATACACATG 59.536 47.619 0.00 0.00 39.45 3.21
284 429 1.807139 TGCACAGACGCAATACACAT 58.193 45.000 0.00 0.00 39.45 3.21
285 430 1.587547 TTGCACAGACGCAATACACA 58.412 45.000 0.00 0.00 46.61 3.72
292 437 2.859526 TGAATTTTTGCACAGACGCA 57.140 40.000 0.00 0.00 41.03 5.24
293 438 4.263016 GTTTTGAATTTTTGCACAGACGC 58.737 39.130 0.00 0.00 0.00 5.19
294 439 4.328440 TGGTTTTGAATTTTTGCACAGACG 59.672 37.500 0.00 0.00 0.00 4.18
295 440 5.793026 TGGTTTTGAATTTTTGCACAGAC 57.207 34.783 0.00 0.00 0.00 3.51
296 441 6.808008 TTTGGTTTTGAATTTTTGCACAGA 57.192 29.167 0.00 0.00 0.00 3.41
297 442 8.397148 AGTATTTGGTTTTGAATTTTTGCACAG 58.603 29.630 0.00 0.00 0.00 3.66
298 443 8.273780 AGTATTTGGTTTTGAATTTTTGCACA 57.726 26.923 0.00 0.00 0.00 4.57
299 444 9.566530 AAAGTATTTGGTTTTGAATTTTTGCAC 57.433 25.926 0.00 0.00 36.60 4.57
300 445 9.780413 GAAAGTATTTGGTTTTGAATTTTTGCA 57.220 25.926 0.00 0.00 39.27 4.08
301 446 9.780413 TGAAAGTATTTGGTTTTGAATTTTTGC 57.220 25.926 0.00 0.00 39.27 3.68
305 450 8.599774 CGTGTGAAAGTATTTGGTTTTGAATTT 58.400 29.630 0.00 0.00 39.27 1.82
306 451 7.762159 ACGTGTGAAAGTATTTGGTTTTGAATT 59.238 29.630 0.00 0.00 39.27 2.17
307 452 7.221838 CACGTGTGAAAGTATTTGGTTTTGAAT 59.778 33.333 7.58 0.00 39.27 2.57
308 453 6.528423 CACGTGTGAAAGTATTTGGTTTTGAA 59.472 34.615 7.58 0.00 39.27 2.69
309 454 6.030849 CACGTGTGAAAGTATTTGGTTTTGA 58.969 36.000 7.58 0.00 39.27 2.69
310 455 5.231147 CCACGTGTGAAAGTATTTGGTTTTG 59.769 40.000 15.65 0.00 39.27 2.44
311 456 5.344884 CCACGTGTGAAAGTATTTGGTTTT 58.655 37.500 15.65 0.00 39.27 2.43
312 457 4.735283 GCCACGTGTGAAAGTATTTGGTTT 60.735 41.667 15.65 0.00 39.27 3.27
313 458 3.243267 GCCACGTGTGAAAGTATTTGGTT 60.243 43.478 15.65 0.00 39.27 3.67
314 459 2.292292 GCCACGTGTGAAAGTATTTGGT 59.708 45.455 15.65 0.00 39.27 3.67
315 460 2.664424 CGCCACGTGTGAAAGTATTTGG 60.664 50.000 15.65 0.00 39.27 3.28
316 461 2.032377 ACGCCACGTGTGAAAGTATTTG 60.032 45.455 15.65 0.00 37.23 2.32
317 462 2.215196 ACGCCACGTGTGAAAGTATTT 58.785 42.857 15.65 0.00 39.22 1.40
318 463 1.873698 ACGCCACGTGTGAAAGTATT 58.126 45.000 15.65 0.00 39.18 1.89
319 464 2.728690 TACGCCACGTGTGAAAGTAT 57.271 45.000 15.65 0.00 41.39 2.12
320 465 2.728690 ATACGCCACGTGTGAAAGTA 57.271 45.000 15.65 10.83 41.39 2.24
321 466 2.229543 TCTATACGCCACGTGTGAAAGT 59.770 45.455 15.65 9.02 41.39 2.66
322 467 2.871133 TCTATACGCCACGTGTGAAAG 58.129 47.619 15.65 4.34 41.39 2.62
323 468 3.300852 TTCTATACGCCACGTGTGAAA 57.699 42.857 15.65 0.00 41.39 2.69
324 469 3.300852 TTTCTATACGCCACGTGTGAA 57.699 42.857 15.65 4.46 41.39 3.18
325 470 3.300852 TTTTCTATACGCCACGTGTGA 57.699 42.857 15.65 0.00 41.39 3.58
347 492 9.361315 GCCCATTTTATAAATACGTTTTTGTCT 57.639 29.630 13.36 2.31 0.00 3.41
348 493 8.597227 GGCCCATTTTATAAATACGTTTTTGTC 58.403 33.333 13.36 0.00 0.00 3.18
349 494 8.095169 TGGCCCATTTTATAAATACGTTTTTGT 58.905 29.630 13.36 9.62 0.00 2.83
350 495 8.480643 TGGCCCATTTTATAAATACGTTTTTG 57.519 30.769 13.36 0.00 0.00 2.44
351 496 9.674068 ATTGGCCCATTTTATAAATACGTTTTT 57.326 25.926 8.98 8.98 0.00 1.94
352 497 9.674068 AATTGGCCCATTTTATAAATACGTTTT 57.326 25.926 0.00 0.00 0.00 2.43
353 498 9.674068 AAATTGGCCCATTTTATAAATACGTTT 57.326 25.926 8.96 0.00 0.00 3.60
354 499 9.674068 AAAATTGGCCCATTTTATAAATACGTT 57.326 25.926 22.50 0.00 0.00 3.99
355 500 9.674068 AAAAATTGGCCCATTTTATAAATACGT 57.326 25.926 23.68 6.19 30.65 3.57
356 501 9.928236 CAAAAATTGGCCCATTTTATAAATACG 57.072 29.630 23.68 5.88 30.65 3.06
360 505 9.136323 ACAACAAAAATTGGCCCATTTTATAAA 57.864 25.926 23.68 0.00 33.63 1.40
361 506 8.697507 ACAACAAAAATTGGCCCATTTTATAA 57.302 26.923 23.68 0.00 33.63 0.98
362 507 8.571336 CAACAACAAAAATTGGCCCATTTTATA 58.429 29.630 23.68 0.00 33.63 0.98
363 508 7.432059 CAACAACAAAAATTGGCCCATTTTAT 58.568 30.769 23.68 14.44 33.63 1.40
364 509 6.183360 CCAACAACAAAAATTGGCCCATTTTA 60.183 34.615 23.68 0.00 36.72 1.52
365 510 5.394993 CCAACAACAAAAATTGGCCCATTTT 60.395 36.000 19.22 19.22 36.72 1.82
366 511 4.099113 CCAACAACAAAAATTGGCCCATTT 59.901 37.500 8.96 8.96 36.72 2.32
367 512 3.635836 CCAACAACAAAAATTGGCCCATT 59.364 39.130 0.00 0.00 36.72 3.16
368 513 3.220940 CCAACAACAAAAATTGGCCCAT 58.779 40.909 0.00 0.00 36.72 4.00
369 514 2.648059 CCAACAACAAAAATTGGCCCA 58.352 42.857 0.00 0.00 36.72 5.36
370 515 1.952990 CCCAACAACAAAAATTGGCCC 59.047 47.619 0.00 0.00 41.38 5.80
371 516 1.336440 GCCCAACAACAAAAATTGGCC 59.664 47.619 0.00 0.00 41.38 5.36
372 517 1.336440 GGCCCAACAACAAAAATTGGC 59.664 47.619 0.00 0.00 41.38 4.52
373 518 1.601430 CGGCCCAACAACAAAAATTGG 59.399 47.619 0.00 0.00 42.21 3.16
374 519 1.601430 CCGGCCCAACAACAAAAATTG 59.399 47.619 0.00 0.00 35.59 2.32
375 520 1.486726 TCCGGCCCAACAACAAAAATT 59.513 42.857 0.00 0.00 0.00 1.82
376 521 1.123928 TCCGGCCCAACAACAAAAAT 58.876 45.000 0.00 0.00 0.00 1.82
377 522 1.123928 ATCCGGCCCAACAACAAAAA 58.876 45.000 0.00 0.00 0.00 1.94
378 523 1.123928 AATCCGGCCCAACAACAAAA 58.876 45.000 0.00 0.00 0.00 2.44
379 524 1.123928 AAATCCGGCCCAACAACAAA 58.876 45.000 0.00 0.00 0.00 2.83
380 525 1.123928 AAAATCCGGCCCAACAACAA 58.876 45.000 0.00 0.00 0.00 2.83
381 526 1.123928 AAAAATCCGGCCCAACAACA 58.876 45.000 0.00 0.00 0.00 3.33
382 527 1.202592 ACAAAAATCCGGCCCAACAAC 60.203 47.619 0.00 0.00 0.00 3.32
383 528 1.123928 ACAAAAATCCGGCCCAACAA 58.876 45.000 0.00 0.00 0.00 2.83
384 529 1.123928 AACAAAAATCCGGCCCAACA 58.876 45.000 0.00 0.00 0.00 3.33
385 530 2.248280 AAACAAAAATCCGGCCCAAC 57.752 45.000 0.00 0.00 0.00 3.77
386 531 3.283259 AAAAACAAAAATCCGGCCCAA 57.717 38.095 0.00 0.00 0.00 4.12
404 549 6.460399 GGTGTGATTTGTAGGCTGTACAAAAA 60.460 38.462 21.14 13.64 46.38 1.94
405 550 5.009210 GGTGTGATTTGTAGGCTGTACAAAA 59.991 40.000 21.14 9.41 46.38 2.44
407 552 4.069304 GGTGTGATTTGTAGGCTGTACAA 58.931 43.478 0.00 0.00 35.84 2.41
408 553 3.071747 TGGTGTGATTTGTAGGCTGTACA 59.928 43.478 0.00 0.00 0.00 2.90
409 554 3.670625 TGGTGTGATTTGTAGGCTGTAC 58.329 45.455 0.00 0.00 0.00 2.90
410 555 4.359434 TTGGTGTGATTTGTAGGCTGTA 57.641 40.909 0.00 0.00 0.00 2.74
411 556 2.949177 TGGTGTGATTTGTAGGCTGT 57.051 45.000 0.00 0.00 0.00 4.40
412 557 4.789012 ATTTGGTGTGATTTGTAGGCTG 57.211 40.909 0.00 0.00 0.00 4.85
413 558 4.832266 TGAATTTGGTGTGATTTGTAGGCT 59.168 37.500 0.00 0.00 0.00 4.58
414 559 5.132897 TGAATTTGGTGTGATTTGTAGGC 57.867 39.130 0.00 0.00 0.00 3.93
415 560 9.703892 TTATTTGAATTTGGTGTGATTTGTAGG 57.296 29.630 0.00 0.00 0.00 3.18
433 578 9.160576 CACGAACGTGTAAGAAAATTATTTGAA 57.839 29.630 17.44 0.00 40.91 2.69
435 580 7.426169 GCACGAACGTGTAAGAAAATTATTTG 58.574 34.615 24.28 0.00 46.90 2.32
442 587 1.258458 CCGCACGAACGTGTAAGAAAA 59.742 47.619 24.28 0.00 46.90 2.29
443 588 0.854062 CCGCACGAACGTGTAAGAAA 59.146 50.000 24.28 0.00 46.90 2.52
446 591 0.854062 TTTCCGCACGAACGTGTAAG 59.146 50.000 24.28 16.75 46.90 2.34
451 596 2.288961 ATAGATTTCCGCACGAACGT 57.711 45.000 0.00 0.00 0.00 3.99
452 597 4.266976 ACTTAATAGATTTCCGCACGAACG 59.733 41.667 0.00 0.00 0.00 3.95
453 598 5.713822 ACTTAATAGATTTCCGCACGAAC 57.286 39.130 0.00 0.00 0.00 3.95
454 599 6.256321 GGTAACTTAATAGATTTCCGCACGAA 59.744 38.462 0.00 0.00 0.00 3.85
455 600 5.750067 GGTAACTTAATAGATTTCCGCACGA 59.250 40.000 0.00 0.00 0.00 4.35
456 601 5.332055 CGGTAACTTAATAGATTTCCGCACG 60.332 44.000 0.00 0.00 0.00 5.34
457 602 5.521372 ACGGTAACTTAATAGATTTCCGCAC 59.479 40.000 0.00 0.00 39.15 5.34
458 603 5.521010 CACGGTAACTTAATAGATTTCCGCA 59.479 40.000 0.00 0.00 39.15 5.69
459 604 5.050567 CCACGGTAACTTAATAGATTTCCGC 60.051 44.000 0.00 0.00 39.15 5.54
460 605 6.275335 TCCACGGTAACTTAATAGATTTCCG 58.725 40.000 0.00 0.00 40.94 4.30
461 606 8.672823 AATCCACGGTAACTTAATAGATTTCC 57.327 34.615 0.00 0.00 0.00 3.13
530 675 5.243730 CCAGGGAGCTCAGTATTTTGAAAAA 59.756 40.000 17.19 0.00 0.00 1.94
531 676 4.766891 CCAGGGAGCTCAGTATTTTGAAAA 59.233 41.667 17.19 0.00 0.00 2.29
532 677 4.042809 TCCAGGGAGCTCAGTATTTTGAAA 59.957 41.667 17.19 0.00 0.00 2.69
533 678 3.587061 TCCAGGGAGCTCAGTATTTTGAA 59.413 43.478 17.19 0.00 0.00 2.69
534 679 3.181329 TCCAGGGAGCTCAGTATTTTGA 58.819 45.455 17.19 0.00 0.00 2.69
535 680 3.539604 CTCCAGGGAGCTCAGTATTTTG 58.460 50.000 17.19 2.58 35.31 2.44
536 681 3.922171 CTCCAGGGAGCTCAGTATTTT 57.078 47.619 17.19 0.00 35.31 1.82
547 692 3.013932 AGGCCAAGCTCCAGGGAG 61.014 66.667 5.01 11.06 44.56 4.30
548 693 3.011517 GAGGCCAAGCTCCAGGGA 61.012 66.667 5.01 0.00 0.00 4.20
549 694 4.120755 GGAGGCCAAGCTCCAGGG 62.121 72.222 5.01 0.00 39.45 4.45
550 695 4.479993 CGGAGGCCAAGCTCCAGG 62.480 72.222 5.01 0.00 39.62 4.45
551 696 3.259633 AACGGAGGCCAAGCTCCAG 62.260 63.158 5.01 2.36 39.62 3.86
552 697 3.249189 AACGGAGGCCAAGCTCCA 61.249 61.111 5.01 0.00 39.62 3.86
553 698 2.747855 CAACGGAGGCCAAGCTCC 60.748 66.667 5.01 1.12 36.45 4.70
554 699 2.747855 CCAACGGAGGCCAAGCTC 60.748 66.667 5.01 0.00 0.00 4.09
562 707 1.506262 CGGAAAATGCCAACGGAGG 59.494 57.895 0.00 0.00 0.00 4.30
565 710 2.126110 GCCGGAAAATGCCAACGG 60.126 61.111 5.05 0.00 46.78 4.44
571 716 1.270550 CATGGATAGGCCGGAAAATGC 59.729 52.381 5.05 0.00 40.66 3.56
572 717 1.270550 GCATGGATAGGCCGGAAAATG 59.729 52.381 5.05 1.50 40.66 2.32
573 718 1.133513 TGCATGGATAGGCCGGAAAAT 60.134 47.619 5.05 0.00 40.66 1.82
574 719 0.257328 TGCATGGATAGGCCGGAAAA 59.743 50.000 5.05 0.00 40.66 2.29
575 720 0.465460 GTGCATGGATAGGCCGGAAA 60.465 55.000 5.05 0.00 40.66 3.13
576 721 1.148273 GTGCATGGATAGGCCGGAA 59.852 57.895 5.05 0.00 40.66 4.30
577 722 1.344953 AAGTGCATGGATAGGCCGGA 61.345 55.000 5.05 0.00 40.66 5.14
578 723 0.886490 GAAGTGCATGGATAGGCCGG 60.886 60.000 0.00 0.00 40.66 6.13
579 724 0.107456 AGAAGTGCATGGATAGGCCG 59.893 55.000 0.00 0.00 40.66 6.13
580 725 1.419387 AGAGAAGTGCATGGATAGGCC 59.581 52.381 0.00 0.00 31.29 5.19
581 726 2.926778 AGAGAAGTGCATGGATAGGC 57.073 50.000 0.00 0.00 0.00 3.93
582 727 5.245751 ACAGATAGAGAAGTGCATGGATAGG 59.754 44.000 0.00 0.00 0.00 2.57
583 728 6.157904 CACAGATAGAGAAGTGCATGGATAG 58.842 44.000 0.00 0.00 0.00 2.08
584 729 5.011431 CCACAGATAGAGAAGTGCATGGATA 59.989 44.000 0.00 0.00 0.00 2.59
585 730 4.202336 CCACAGATAGAGAAGTGCATGGAT 60.202 45.833 0.00 0.00 0.00 3.41
586 731 3.133542 CCACAGATAGAGAAGTGCATGGA 59.866 47.826 0.00 0.00 0.00 3.41
587 732 3.118482 ACCACAGATAGAGAAGTGCATGG 60.118 47.826 0.00 0.00 0.00 3.66
588 733 4.134379 ACCACAGATAGAGAAGTGCATG 57.866 45.455 0.00 0.00 0.00 4.06
589 734 4.833478 AACCACAGATAGAGAAGTGCAT 57.167 40.909 0.00 0.00 0.00 3.96
590 735 4.772624 AGTAACCACAGATAGAGAAGTGCA 59.227 41.667 0.00 0.00 0.00 4.57
591 736 5.331876 AGTAACCACAGATAGAGAAGTGC 57.668 43.478 0.00 0.00 0.00 4.40
595 740 9.982651 GCAATATAAGTAACCACAGATAGAGAA 57.017 33.333 0.00 0.00 0.00 2.87
596 741 9.368416 AGCAATATAAGTAACCACAGATAGAGA 57.632 33.333 0.00 0.00 0.00 3.10
599 744 9.360093 GCTAGCAATATAAGTAACCACAGATAG 57.640 37.037 10.63 0.00 0.00 2.08
600 745 9.090103 AGCTAGCAATATAAGTAACCACAGATA 57.910 33.333 18.83 0.00 0.00 1.98
642 792 4.799678 CGTCTCTCTTGTATGAGTTGTGT 58.200 43.478 0.00 0.00 35.68 3.72
646 796 3.759086 TCAGCGTCTCTCTTGTATGAGTT 59.241 43.478 0.00 0.00 35.68 3.01
669 821 4.212847 CCGCCACTTCATATTCATCTCTTG 59.787 45.833 0.00 0.00 0.00 3.02
680 832 0.907704 AGACCCACCGCCACTTCATA 60.908 55.000 0.00 0.00 0.00 2.15
746 898 2.805353 CTCGTTGTCTGACCGCCG 60.805 66.667 5.17 5.06 0.00 6.46
780 932 5.133264 GCATCGCACGAAGATAACATAAAG 58.867 41.667 0.00 0.00 0.00 1.85
805 960 3.596310 TGGACAAAATGACGACCGATA 57.404 42.857 0.00 0.00 0.00 2.92
812 967 6.563422 ACCATGATAAATGGACAAAATGACG 58.437 36.000 11.25 0.00 41.64 4.35
831 986 2.094182 ACTAGTCTGCGTACCAACCATG 60.094 50.000 0.00 0.00 0.00 3.66
867 1022 7.380065 CGGAGTTCTACTCATCAGCTTAAATAC 59.620 40.741 8.89 0.00 46.79 1.89
878 1033 3.378742 TCTTCTGCGGAGTTCTACTCATC 59.621 47.826 3.10 1.07 46.79 2.92
894 1049 2.490903 CTCATGGGGTTGCTTTCTTCTG 59.509 50.000 0.00 0.00 0.00 3.02
911 1066 8.902540 TTATTATAAACTTGTGGCGATCTCAT 57.097 30.769 0.00 0.00 0.00 2.90
952 1107 6.697455 GGCTTTCTTCTTTTTCGAAGTTGAAT 59.303 34.615 0.00 0.00 40.89 2.57
955 1110 5.339990 TGGCTTTCTTCTTTTTCGAAGTTG 58.660 37.500 0.00 0.00 40.89 3.16
956 1111 5.450550 CCTGGCTTTCTTCTTTTTCGAAGTT 60.451 40.000 0.00 0.00 40.89 2.66
979 1135 4.744795 TGAGTGAGATCTAAAAGGAGCC 57.255 45.455 0.00 0.00 0.00 4.70
980 1136 5.055812 CCATGAGTGAGATCTAAAAGGAGC 58.944 45.833 0.00 0.00 0.00 4.70
1010 1169 0.175989 GGAGGTCAAGGAGCTTACGG 59.824 60.000 0.00 0.00 40.67 4.02
1039 1198 2.279517 CTCCGGACTGTATGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
1075 1234 1.800655 CGATGCAGACACTAGTGAGCC 60.801 57.143 29.30 16.35 0.00 4.70
1195 1355 3.318017 CTTAGACAGGGTCTTCACAACG 58.682 50.000 3.98 0.00 40.28 4.10
1203 1363 2.632763 AGGAAGCTTAGACAGGGTCT 57.367 50.000 0.00 4.13 45.54 3.85
1204 1364 3.367321 AGTAGGAAGCTTAGACAGGGTC 58.633 50.000 0.00 0.00 0.00 4.46
1230 1390 7.124573 TGTAAGATACTGCCATCAACATACT 57.875 36.000 0.00 0.00 0.00 2.12
1266 1426 8.245491 TGAACAAAATAGGTGAATGTCATCATG 58.755 33.333 0.00 0.00 34.19 3.07
1268 1428 7.094248 CCTGAACAAAATAGGTGAATGTCATCA 60.094 37.037 0.00 0.00 27.47 3.07
1270 1430 6.947733 TCCTGAACAAAATAGGTGAATGTCAT 59.052 34.615 0.00 0.00 33.30 3.06
1271 1431 6.303054 TCCTGAACAAAATAGGTGAATGTCA 58.697 36.000 0.00 0.00 33.30 3.58
1272 1432 6.817765 TCCTGAACAAAATAGGTGAATGTC 57.182 37.500 0.00 0.00 33.30 3.06
1273 1433 6.378280 GGATCCTGAACAAAATAGGTGAATGT 59.622 38.462 3.84 0.00 33.30 2.71
1274 1434 6.183360 GGGATCCTGAACAAAATAGGTGAATG 60.183 42.308 12.58 0.00 33.30 2.67
1275 1435 5.893824 GGGATCCTGAACAAAATAGGTGAAT 59.106 40.000 12.58 0.00 33.30 2.57
1312 1472 0.108424 CTCCAGAGGAGCTTGAACCG 60.108 60.000 0.00 0.00 43.29 4.44
1322 1482 3.177291 TGGTCGGTCTCCAGAGGA 58.823 61.111 0.00 0.00 0.00 3.71
1327 1487 2.037367 CCTCCTGGTCGGTCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
1337 1497 1.068121 ACTGGGAAGTTTCCTCCTGG 58.932 55.000 10.53 0.00 46.72 4.45
1383 1543 5.161943 AGGGAGTACATGTTAACACTTCC 57.838 43.478 11.22 13.97 36.99 3.46
1402 1564 5.420409 GCTCTTATATTATGGGACGAAGGG 58.580 45.833 0.00 0.00 0.00 3.95
1403 1565 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
1404 1566 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
1405 1567 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
1406 1568 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
1407 1569 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1408 1570 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
1409 1571 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1410 1572 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
1411 1573 8.612619 ACTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
1414 1576 8.800972 CGTACTGTCAAAAACGCTCTTATATTA 58.199 33.333 0.00 0.00 0.00 0.98
1415 1577 7.543172 TCGTACTGTCAAAAACGCTCTTATATT 59.457 33.333 0.00 0.00 35.40 1.28
1416 1578 7.031372 TCGTACTGTCAAAAACGCTCTTATAT 58.969 34.615 0.00 0.00 35.40 0.86
1417 1579 6.380995 TCGTACTGTCAAAAACGCTCTTATA 58.619 36.000 0.00 0.00 35.40 0.98
1418 1580 5.224888 TCGTACTGTCAAAAACGCTCTTAT 58.775 37.500 0.00 0.00 35.40 1.73
1419 1581 4.609947 TCGTACTGTCAAAAACGCTCTTA 58.390 39.130 0.00 0.00 35.40 2.10
1420 1582 3.450578 TCGTACTGTCAAAAACGCTCTT 58.549 40.909 0.00 0.00 35.40 2.85
1421 1583 3.050619 CTCGTACTGTCAAAAACGCTCT 58.949 45.455 0.00 0.00 35.40 4.09
1422 1584 2.793232 ACTCGTACTGTCAAAAACGCTC 59.207 45.455 0.00 0.00 35.40 5.03
1423 1585 2.817901 ACTCGTACTGTCAAAAACGCT 58.182 42.857 0.00 0.00 35.40 5.07
1424 1586 3.732721 AGTACTCGTACTGTCAAAAACGC 59.267 43.478 8.82 0.00 44.11 4.84
1425 1587 5.340667 GGTAGTACTCGTACTGTCAAAAACG 59.659 44.000 17.57 0.00 45.25 3.60
1426 1588 5.340667 CGGTAGTACTCGTACTGTCAAAAAC 59.659 44.000 17.57 7.49 45.25 2.43
1427 1589 5.008613 ACGGTAGTACTCGTACTGTCAAAAA 59.991 40.000 17.57 0.00 45.25 1.94
1428 1590 4.515191 ACGGTAGTACTCGTACTGTCAAAA 59.485 41.667 17.57 0.00 45.25 2.44
1429 1591 4.065088 ACGGTAGTACTCGTACTGTCAAA 58.935 43.478 17.57 0.00 45.25 2.69
1430 1592 3.664107 ACGGTAGTACTCGTACTGTCAA 58.336 45.455 17.57 0.00 45.25 3.18
1431 1593 3.319137 ACGGTAGTACTCGTACTGTCA 57.681 47.619 17.57 0.00 45.25 3.58
1432 1594 5.975410 AATACGGTAGTACTCGTACTGTC 57.025 43.478 16.37 11.12 45.25 3.51
1433 1595 6.036517 CAGAAATACGGTAGTACTCGTACTGT 59.963 42.308 16.37 14.31 45.25 3.55
1434 1596 6.256539 TCAGAAATACGGTAGTACTCGTACTG 59.743 42.308 16.37 17.26 45.25 2.74
1436 1598 6.589830 TCAGAAATACGGTAGTACTCGTAC 57.410 41.667 16.37 2.70 43.25 3.67
1437 1599 7.712639 AGATTCAGAAATACGGTAGTACTCGTA 59.287 37.037 16.37 16.37 44.31 3.43
1438 1600 6.541641 AGATTCAGAAATACGGTAGTACTCGT 59.458 38.462 13.37 13.37 42.55 4.18
1439 1601 6.851837 CAGATTCAGAAATACGGTAGTACTCG 59.148 42.308 0.00 0.00 35.39 4.18
1440 1602 7.705214 ACAGATTCAGAAATACGGTAGTACTC 58.295 38.462 0.00 0.00 35.39 2.59
1441 1603 7.642082 ACAGATTCAGAAATACGGTAGTACT 57.358 36.000 0.00 0.00 35.39 2.73
1442 1604 7.758528 ACAACAGATTCAGAAATACGGTAGTAC 59.241 37.037 0.00 0.00 35.39 2.73
1443 1605 7.833786 ACAACAGATTCAGAAATACGGTAGTA 58.166 34.615 0.00 0.00 37.24 1.82
1444 1606 6.698380 ACAACAGATTCAGAAATACGGTAGT 58.302 36.000 0.00 0.00 0.00 2.73
1445 1607 6.020599 CGACAACAGATTCAGAAATACGGTAG 60.021 42.308 0.00 0.00 0.00 3.18
1446 1608 5.803461 CGACAACAGATTCAGAAATACGGTA 59.197 40.000 0.00 0.00 0.00 4.02
1447 1609 4.625742 CGACAACAGATTCAGAAATACGGT 59.374 41.667 0.00 0.00 0.00 4.83
1448 1610 4.862574 TCGACAACAGATTCAGAAATACGG 59.137 41.667 0.00 0.00 0.00 4.02
1449 1611 6.575083 ATCGACAACAGATTCAGAAATACG 57.425 37.500 0.00 0.00 0.00 3.06
1465 1627 4.819088 TCAATGTGTGAAGGAAATCGACAA 59.181 37.500 0.00 0.00 31.51 3.18
1500 1662 2.806745 CGAGCAACTTGACCCTGAGAAA 60.807 50.000 0.00 0.00 0.00 2.52
1515 1677 2.416244 AAGAAGACGCCGACGAGCAA 62.416 55.000 0.00 0.00 43.93 3.91
1526 1688 0.385223 GCACTGCAGCAAAGAAGACG 60.385 55.000 15.27 0.00 0.00 4.18
1538 1700 1.416030 TGTCTGTAAAGAGGCACTGCA 59.584 47.619 2.82 0.00 41.55 4.41
1544 1706 4.681744 CTCTCATCTGTCTGTAAAGAGGC 58.318 47.826 0.00 0.00 0.00 4.70
1582 1744 5.297776 CAGGTGGTAAAGCTATCTGATTTGG 59.702 44.000 0.00 0.00 34.88 3.28
1589 1751 3.713764 AGCATCAGGTGGTAAAGCTATCT 59.286 43.478 0.00 0.00 36.63 1.98
1590 1752 4.061596 GAGCATCAGGTGGTAAAGCTATC 58.938 47.826 0.00 0.00 39.00 2.08
1591 1753 3.493350 CGAGCATCAGGTGGTAAAGCTAT 60.493 47.826 0.00 0.00 39.00 2.97
1593 1755 1.406069 CGAGCATCAGGTGGTAAAGCT 60.406 52.381 0.00 0.00 39.00 3.74
1595 1757 2.002586 CACGAGCATCAGGTGGTAAAG 58.997 52.381 0.00 0.00 39.00 1.85
1596 1758 1.621317 TCACGAGCATCAGGTGGTAAA 59.379 47.619 0.00 0.00 39.00 2.01
1597 1759 1.204704 CTCACGAGCATCAGGTGGTAA 59.795 52.381 0.00 0.00 39.00 2.85
1598 1760 0.817654 CTCACGAGCATCAGGTGGTA 59.182 55.000 0.00 0.00 39.00 3.25
1599 1761 1.593787 CTCACGAGCATCAGGTGGT 59.406 57.895 0.00 0.00 42.28 4.16
1600 1762 4.509756 CTCACGAGCATCAGGTGG 57.490 61.111 0.00 0.00 33.17 4.61
1610 1772 3.192844 TGGAAAAGGTAGTAGCTCACGAG 59.807 47.826 1.58 0.00 0.00 4.18
1611 1773 3.159472 TGGAAAAGGTAGTAGCTCACGA 58.841 45.455 1.58 0.00 0.00 4.35
1612 1774 3.587797 TGGAAAAGGTAGTAGCTCACG 57.412 47.619 1.58 0.00 0.00 4.35
1613 1775 6.641474 ACTAATGGAAAAGGTAGTAGCTCAC 58.359 40.000 1.58 0.00 0.00 3.51
1614 1776 6.869206 ACTAATGGAAAAGGTAGTAGCTCA 57.131 37.500 1.58 0.00 0.00 4.26
1615 1777 6.762187 GGAACTAATGGAAAAGGTAGTAGCTC 59.238 42.308 1.58 0.00 0.00 4.09
1616 1778 6.629739 CGGAACTAATGGAAAAGGTAGTAGCT 60.630 42.308 0.00 0.00 0.00 3.32
1641 1803 5.747197 CGTGGGACTATGTTATGTCTGTTAC 59.253 44.000 0.00 0.00 34.01 2.50
1649 1811 5.050490 CCTTTCTCGTGGGACTATGTTATG 58.950 45.833 0.00 0.00 0.00 1.90
1680 1979 4.985538 TCTATCAGGTTTTGGCACTCTTT 58.014 39.130 0.00 0.00 0.00 2.52
1681 1980 4.042187 ACTCTATCAGGTTTTGGCACTCTT 59.958 41.667 0.00 0.00 0.00 2.85
1731 2043 4.732285 TCGCAGATTCTTTTCAGTTGTC 57.268 40.909 0.00 0.00 0.00 3.18
1769 2081 0.251922 AGGACGGTAGCACCTGGTAA 60.252 55.000 0.00 0.00 35.66 2.85
1836 2285 0.469917 GGAATCCTGAAGATGGGCGA 59.530 55.000 0.00 0.00 34.56 5.54
1920 2387 1.442017 GAACATCGCGTGGTTTGCC 60.442 57.895 16.62 4.10 0.00 4.52
1961 2429 3.133003 GCTACTTGCTAGGTGATCTGGAA 59.867 47.826 0.00 0.00 38.95 3.53
1979 2447 2.066262 TGCTCGCTTACACTTTGCTAC 58.934 47.619 0.00 0.00 0.00 3.58
2032 2899 2.832129 CTCCTAACTCCTTGTGGCAGTA 59.168 50.000 0.00 0.00 0.00 2.74
2096 4311 2.573462 ACGTCTAGGGTAGTGTGAGGTA 59.427 50.000 0.00 0.00 0.00 3.08
2097 4312 1.353694 ACGTCTAGGGTAGTGTGAGGT 59.646 52.381 0.00 0.00 0.00 3.85
2098 4313 2.015587 GACGTCTAGGGTAGTGTGAGG 58.984 57.143 8.70 0.00 0.00 3.86
2099 4314 2.678836 CTGACGTCTAGGGTAGTGTGAG 59.321 54.545 17.92 0.00 0.00 3.51
2100 4315 2.617276 CCTGACGTCTAGGGTAGTGTGA 60.617 54.545 17.92 0.00 0.00 3.58
2101 4316 1.743958 CCTGACGTCTAGGGTAGTGTG 59.256 57.143 17.92 0.00 0.00 3.82
2102 4317 1.954258 GCCTGACGTCTAGGGTAGTGT 60.954 57.143 25.52 0.00 35.80 3.55
2103 4318 0.739561 GCCTGACGTCTAGGGTAGTG 59.260 60.000 25.52 8.49 35.80 2.74
2104 4319 0.747283 CGCCTGACGTCTAGGGTAGT 60.747 60.000 25.52 0.00 35.80 2.73
2105 4320 0.463295 TCGCCTGACGTCTAGGGTAG 60.463 60.000 25.52 17.81 44.19 3.18
2106 4321 0.463295 CTCGCCTGACGTCTAGGGTA 60.463 60.000 25.52 13.75 44.19 3.69
2107 4322 1.749638 CTCGCCTGACGTCTAGGGT 60.750 63.158 25.52 0.00 44.19 4.34
2108 4323 0.463295 TACTCGCCTGACGTCTAGGG 60.463 60.000 25.52 20.58 44.19 3.53
2109 4324 1.376543 TTACTCGCCTGACGTCTAGG 58.623 55.000 22.32 22.32 44.19 3.02
2110 4325 3.427243 CTTTTACTCGCCTGACGTCTAG 58.573 50.000 17.92 12.00 44.19 2.43
2111 4326 2.163010 CCTTTTACTCGCCTGACGTCTA 59.837 50.000 17.92 2.26 44.19 2.59
2112 4327 1.067776 CCTTTTACTCGCCTGACGTCT 60.068 52.381 17.92 0.00 44.19 4.18
2113 4328 1.347320 CCTTTTACTCGCCTGACGTC 58.653 55.000 9.11 9.11 44.19 4.34
2114 4329 0.037605 CCCTTTTACTCGCCTGACGT 60.038 55.000 0.00 0.00 44.19 4.34
2115 4330 0.037605 ACCCTTTTACTCGCCTGACG 60.038 55.000 0.00 0.00 45.62 4.35
2116 4331 2.180432 AACCCTTTTACTCGCCTGAC 57.820 50.000 0.00 0.00 0.00 3.51
2117 4332 2.027837 GGTAACCCTTTTACTCGCCTGA 60.028 50.000 0.00 0.00 0.00 3.86
2118 4333 2.353323 GGTAACCCTTTTACTCGCCTG 58.647 52.381 0.00 0.00 0.00 4.85
2119 4334 2.775911 GGTAACCCTTTTACTCGCCT 57.224 50.000 0.00 0.00 0.00 5.52
2133 4348 2.804527 GACCGTTGTGAGAAAGGGTAAC 59.195 50.000 0.00 0.00 45.78 2.50
2134 4349 2.435069 TGACCGTTGTGAGAAAGGGTAA 59.565 45.455 0.00 0.00 45.78 2.85
2135 4350 2.040939 TGACCGTTGTGAGAAAGGGTA 58.959 47.619 0.00 0.00 45.78 3.69
2150 4365 4.677584 TCCTTTTTGTGATTTTGTGACCG 58.322 39.130 0.00 0.00 0.00 4.79
2152 4367 5.748630 GGTCTCCTTTTTGTGATTTTGTGAC 59.251 40.000 0.00 0.00 0.00 3.67
2161 4376 1.144913 CCCAGGGTCTCCTTTTTGTGA 59.855 52.381 0.00 0.00 42.67 3.58
2179 4394 5.625150 ACAATATGTAGAGAGGAAATGCCC 58.375 41.667 0.00 0.00 37.37 5.36
2209 4424 7.067494 GCACCTGTATCTAAATTTTGTCCTGAT 59.933 37.037 0.00 0.00 0.00 2.90
2211 4426 6.150976 TGCACCTGTATCTAAATTTTGTCCTG 59.849 38.462 0.00 0.00 0.00 3.86
2363 4579 9.624697 GCATAAACATGTACTGAAGATTGAAAA 57.375 29.630 0.00 0.00 0.00 2.29
2364 4580 8.243426 GGCATAAACATGTACTGAAGATTGAAA 58.757 33.333 0.00 0.00 0.00 2.69
2365 4581 7.611467 AGGCATAAACATGTACTGAAGATTGAA 59.389 33.333 0.00 0.00 0.00 2.69
2366 4582 7.112122 AGGCATAAACATGTACTGAAGATTGA 58.888 34.615 0.00 0.00 0.00 2.57
2367 4583 7.325660 AGGCATAAACATGTACTGAAGATTG 57.674 36.000 0.00 0.00 0.00 2.67
2370 4586 6.711277 AGAAGGCATAAACATGTACTGAAGA 58.289 36.000 0.00 0.00 0.00 2.87
2371 4587 6.992063 AGAAGGCATAAACATGTACTGAAG 57.008 37.500 0.00 0.00 0.00 3.02
2372 4588 8.046708 ACATAGAAGGCATAAACATGTACTGAA 58.953 33.333 0.00 0.00 0.00 3.02
2423 4644 7.781056 TCTTTTTCTTCCAAGTAAAATGTGCT 58.219 30.769 4.82 0.00 35.63 4.40
2478 4699 6.256975 CACGTAAGATCGACATAATTTGGGAA 59.743 38.462 0.00 0.00 43.62 3.97
2576 4833 1.974265 TTTCGACCACCTCAATTGCA 58.026 45.000 0.00 0.00 0.00 4.08
2717 4974 0.617820 TTAGGGCCTCGGCTTTCTCT 60.618 55.000 10.74 1.65 41.60 3.10
2851 5271 8.498054 ACCAAATAGAGATTAGTTGTCATGTG 57.502 34.615 0.00 0.00 0.00 3.21
2900 5321 9.319143 GTCAAATATCTTGACATAGTAAGCACT 57.681 33.333 18.14 0.00 45.89 4.40
3089 5511 1.087501 TGACATCGTCTCCTCTCACG 58.912 55.000 0.00 0.00 37.36 4.35
3135 5557 7.281774 CCTCGATACTCTGTTAACACCTACTAA 59.718 40.741 3.59 0.00 0.00 2.24
3228 5735 6.991938 TGGTTTGGTTTCTATGAAATGGAAG 58.008 36.000 0.00 0.00 44.81 3.46
3300 5807 5.765576 TGGTCCAATAAAGCTACCACTTA 57.234 39.130 0.00 0.00 35.34 2.24
3362 5889 4.212004 CGCTTTCTGATCAAAGAACAGACA 59.788 41.667 10.69 0.76 40.27 3.41
3365 5892 4.665142 CGACGCTTTCTGATCAAAGAACAG 60.665 45.833 10.69 6.83 35.92 3.16
3367 5894 3.726436 CGACGCTTTCTGATCAAAGAAC 58.274 45.455 10.69 1.62 35.92 3.01
3368 5895 2.157668 GCGACGCTTTCTGATCAAAGAA 59.842 45.455 13.73 2.65 35.67 2.52
3369 5896 1.726791 GCGACGCTTTCTGATCAAAGA 59.273 47.619 13.73 0.00 35.67 2.52
3370 5897 1.460743 TGCGACGCTTTCTGATCAAAG 59.539 47.619 22.08 0.00 36.58 2.77
3371 5898 1.507562 TGCGACGCTTTCTGATCAAA 58.492 45.000 22.08 0.00 0.00 2.69
3372 5899 1.725641 ATGCGACGCTTTCTGATCAA 58.274 45.000 22.08 0.00 0.00 2.57
3373 5900 1.725641 AATGCGACGCTTTCTGATCA 58.274 45.000 22.08 0.00 0.00 2.92
3374 5901 2.094258 TCAAATGCGACGCTTTCTGATC 59.906 45.455 22.08 0.00 0.00 2.92
3375 5902 2.076100 TCAAATGCGACGCTTTCTGAT 58.924 42.857 22.08 1.38 0.00 2.90
3376 5903 1.507562 TCAAATGCGACGCTTTCTGA 58.492 45.000 22.08 20.32 0.00 3.27
3377 5904 2.314561 TTCAAATGCGACGCTTTCTG 57.685 45.000 22.08 18.70 0.00 3.02
3378 5905 2.483877 TCATTCAAATGCGACGCTTTCT 59.516 40.909 22.08 8.96 36.36 2.52
3379 5906 2.850321 TCATTCAAATGCGACGCTTTC 58.150 42.857 22.08 0.00 36.36 2.62
3380 5907 2.987413 TCATTCAAATGCGACGCTTT 57.013 40.000 22.08 18.07 36.36 3.51
3381 5908 2.478370 CCATCATTCAAATGCGACGCTT 60.478 45.455 22.08 12.36 36.36 4.68
3382 5909 1.064505 CCATCATTCAAATGCGACGCT 59.935 47.619 22.08 3.53 36.36 5.07
3383 5910 1.202177 ACCATCATTCAAATGCGACGC 60.202 47.619 14.19 14.19 36.36 5.19
3384 5911 2.352651 AGACCATCATTCAAATGCGACG 59.647 45.455 0.00 0.00 36.36 5.12
3385 5912 4.100529 CAAGACCATCATTCAAATGCGAC 58.899 43.478 0.00 0.00 36.36 5.19
3386 5913 3.427909 GCAAGACCATCATTCAAATGCGA 60.428 43.478 0.00 0.00 36.36 5.10
3387 5914 2.855963 GCAAGACCATCATTCAAATGCG 59.144 45.455 0.00 0.00 36.36 4.73
3388 5915 3.852286 TGCAAGACCATCATTCAAATGC 58.148 40.909 0.00 0.00 36.36 3.56
3389 5916 5.047847 GGATGCAAGACCATCATTCAAATG 58.952 41.667 0.00 0.00 42.63 2.32
3390 5917 4.712829 TGGATGCAAGACCATCATTCAAAT 59.287 37.500 6.55 0.00 42.63 2.32
3391 5918 4.087907 TGGATGCAAGACCATCATTCAAA 58.912 39.130 6.55 0.00 42.63 2.69
3421 5948 1.000506 GTGTAGACTGTTCCTCGGCAA 59.999 52.381 0.00 0.00 0.00 4.52
3446 5973 8.821686 ATAATGTCATGGATTGTTCTTGGTAA 57.178 30.769 0.00 0.00 0.00 2.85
3520 6047 9.832445 CAAGTGGAGTATGTAAGGTACATTATT 57.168 33.333 2.93 0.00 46.69 1.40
3694 6222 9.368416 TGAATGTAGTGCTAACTCCTTATCTAT 57.632 33.333 0.00 0.00 37.88 1.98
3863 6436 2.683362 GGAGCGGAAGTATTTTCCAAGG 59.317 50.000 6.73 0.00 38.49 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.