Multiple sequence alignment - TraesCS2D01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G315700 chr2D 100.000 4439 0 0 1 4439 405271115 405275553 0.000000e+00 8198.0
1 TraesCS2D01G315700 chr2D 96.117 103 2 2 2190 2290 35508233 35508131 2.750000e-37 167.0
2 TraesCS2D01G315700 chr2D 96.000 100 4 0 2188 2287 28604876 28604975 3.550000e-36 163.0
3 TraesCS2D01G315700 chr2D 97.802 91 2 0 2197 2287 213696779 213696869 1.650000e-34 158.0
4 TraesCS2D01G315700 chr2D 88.136 59 7 0 783 841 57107393 57107451 2.220000e-08 71.3
5 TraesCS2D01G315700 chr2B 92.612 2504 130 27 1966 4439 480409567 480412045 0.000000e+00 3548.0
6 TraesCS2D01G315700 chr2B 89.224 928 59 15 1004 1896 480408454 480409375 0.000000e+00 1122.0
7 TraesCS2D01G315700 chr2B 92.629 502 20 9 1 485 93070986 93071487 0.000000e+00 706.0
8 TraesCS2D01G315700 chr2B 94.554 404 11 2 1 397 717062874 717062475 8.160000e-172 614.0
9 TraesCS2D01G315700 chr2B 98.000 100 2 0 2188 2287 58672881 58672782 1.640000e-39 174.0
10 TraesCS2D01G315700 chr2B 96.907 97 3 0 2191 2287 265421874 265421970 3.550000e-36 163.0
11 TraesCS2D01G315700 chr2B 80.864 162 24 7 792 949 521342804 521342962 2.170000e-23 121.0
12 TraesCS2D01G315700 chr2A 93.389 1664 82 14 1995 3651 543305362 543307004 0.000000e+00 2438.0
13 TraesCS2D01G315700 chr2A 89.239 920 60 25 999 1896 543304430 543305332 0.000000e+00 1114.0
14 TraesCS2D01G315700 chr2A 92.936 453 17 7 4001 4439 543307642 543308093 0.000000e+00 645.0
15 TraesCS2D01G315700 chr2A 89.928 278 18 6 3736 4005 543307220 543307495 2.540000e-92 350.0
16 TraesCS2D01G315700 chr2A 96.117 103 2 2 2190 2290 38597848 38597746 2.750000e-37 167.0
17 TraesCS2D01G315700 chr2A 94.845 97 5 0 2191 2287 241961845 241961941 7.690000e-33 152.0
18 TraesCS2D01G315700 chr7D 97.439 742 17 2 1 740 514577534 514578275 0.000000e+00 1264.0
19 TraesCS2D01G315700 chr7D 98.410 629 10 0 1 629 246396366 246395738 0.000000e+00 1107.0
20 TraesCS2D01G315700 chr7D 91.243 354 24 3 386 738 246396245 246396592 4.020000e-130 475.0
21 TraesCS2D01G315700 chr7D 90.935 353 25 3 386 738 514577655 514577310 6.720000e-128 468.0
22 TraesCS2D01G315700 chr6D 97.162 740 12 2 1 739 79724396 79725127 0.000000e+00 1242.0
23 TraesCS2D01G315700 chr4A 91.783 645 23 13 1 623 703583645 703583009 0.000000e+00 870.0
24 TraesCS2D01G315700 chr4A 92.019 639 21 6 7 623 703638250 703637620 0.000000e+00 870.0
25 TraesCS2D01G315700 chr4A 90.615 650 28 6 1 623 703692471 703691828 0.000000e+00 832.0
26 TraesCS2D01G315700 chr7A 91.534 567 42 5 174 738 477215467 477214905 0.000000e+00 776.0
27 TraesCS2D01G315700 chr7B 92.925 212 12 3 739 948 618414236 618414446 5.580000e-79 305.0
28 TraesCS2D01G315700 chr4D 92.093 215 14 3 739 951 49808740 49808527 2.600000e-77 300.0
29 TraesCS2D01G315700 chr1D 92.308 208 12 2 739 946 47982608 47982811 4.340000e-75 292.0
30 TraesCS2D01G315700 chr1B 90.960 177 14 2 563 738 476924477 476924652 2.060000e-58 237.0
31 TraesCS2D01G315700 chr1B 95.833 120 5 0 1 120 476924466 476924347 1.260000e-45 195.0
32 TraesCS2D01G315700 chr1B 78.431 153 28 5 798 948 672425647 672425498 1.310000e-15 95.3
33 TraesCS2D01G315700 chr5A 84.828 145 22 0 754 898 618341040 618341184 3.580000e-31 147.0
34 TraesCS2D01G315700 chr5A 78.409 176 36 2 749 923 116806703 116806877 3.630000e-21 113.0
35 TraesCS2D01G315700 chr3D 90.909 110 9 1 836 945 14183033 14182925 3.580000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G315700 chr2D 405271115 405275553 4438 False 8198.00 8198 100.000 1 4439 1 chr2D.!!$F4 4438
1 TraesCS2D01G315700 chr2B 480408454 480412045 3591 False 2335.00 3548 90.918 1004 4439 2 chr2B.!!$F4 3435
2 TraesCS2D01G315700 chr2B 93070986 93071487 501 False 706.00 706 92.629 1 485 1 chr2B.!!$F1 484
3 TraesCS2D01G315700 chr2A 543304430 543308093 3663 False 1136.75 2438 91.373 999 4439 4 chr2A.!!$F2 3440
4 TraesCS2D01G315700 chr7D 514577534 514578275 741 False 1264.00 1264 97.439 1 740 1 chr7D.!!$F2 739
5 TraesCS2D01G315700 chr7D 246395738 246396366 628 True 1107.00 1107 98.410 1 629 1 chr7D.!!$R1 628
6 TraesCS2D01G315700 chr6D 79724396 79725127 731 False 1242.00 1242 97.162 1 739 1 chr6D.!!$F1 738
7 TraesCS2D01G315700 chr4A 703583009 703583645 636 True 870.00 870 91.783 1 623 1 chr4A.!!$R1 622
8 TraesCS2D01G315700 chr4A 703637620 703638250 630 True 870.00 870 92.019 7 623 1 chr4A.!!$R2 616
9 TraesCS2D01G315700 chr4A 703691828 703692471 643 True 832.00 832 90.615 1 623 1 chr4A.!!$R3 622
10 TraesCS2D01G315700 chr7A 477214905 477215467 562 True 776.00 776 91.534 174 738 1 chr7A.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 799 0.102481 AGCAAATATCGGCTCGTCGT 59.898 50.0 0.0 0.0 34.76 4.34 F
987 1032 0.106967 GCTTTCCCTCATCAGACCCC 60.107 60.0 0.0 0.0 0.00 4.95 F
988 1033 0.548510 CTTTCCCTCATCAGACCCCC 59.451 60.0 0.0 0.0 0.00 5.40 F
2397 2629 0.183014 CTCTCTCTGCCCCATTGCAT 59.817 55.0 0.0 0.0 41.16 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2367 0.100325 CGGCACACTGAGTTTGCAAA 59.900 50.0 23.24 8.05 40.49 3.68 R
2142 2370 0.593128 ATTCGGCACACTGAGTTTGC 59.407 50.0 14.93 14.93 38.35 3.68 R
2488 2721 0.678048 ATGCTCTCGCCCTTTGTTCC 60.678 55.0 0.00 0.00 34.43 3.62 R
4361 4926 0.177141 CCGAGGGAAATTCGCACCTA 59.823 55.0 12.54 0.00 36.76 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.019673 CGTGGGCTGATTGATTCCAG 58.980 55.000 0.00 0.00 0.00 3.86
322 359 4.642445 ACATCGAATATGTGTACACCGA 57.358 40.909 22.91 21.87 0.00 4.69
617 661 3.625099 GCCCTACTCGGCTTACCA 58.375 61.111 0.00 0.00 46.10 3.25
751 796 5.751243 AAAAATAGCAAATATCGGCTCGT 57.249 34.783 4.50 0.00 41.41 4.18
752 797 4.992381 AAATAGCAAATATCGGCTCGTC 57.008 40.909 4.50 0.00 41.41 4.20
753 798 2.046283 TAGCAAATATCGGCTCGTCG 57.954 50.000 4.50 0.00 41.41 5.12
754 799 0.102481 AGCAAATATCGGCTCGTCGT 59.898 50.000 0.00 0.00 34.76 4.34
755 800 1.335810 AGCAAATATCGGCTCGTCGTA 59.664 47.619 0.00 0.00 34.76 3.43
756 801 2.121786 GCAAATATCGGCTCGTCGTAA 58.878 47.619 0.00 0.00 0.00 3.18
757 802 2.729882 GCAAATATCGGCTCGTCGTAAT 59.270 45.455 0.00 0.00 0.00 1.89
758 803 3.916172 GCAAATATCGGCTCGTCGTAATA 59.084 43.478 0.00 0.00 0.00 0.98
759 804 4.030306 GCAAATATCGGCTCGTCGTAATAG 59.970 45.833 0.00 0.00 0.00 1.73
760 805 5.152097 CAAATATCGGCTCGTCGTAATAGT 58.848 41.667 0.00 0.00 0.00 2.12
761 806 5.368256 AATATCGGCTCGTCGTAATAGTT 57.632 39.130 0.00 0.00 0.00 2.24
762 807 3.705043 ATCGGCTCGTCGTAATAGTTT 57.295 42.857 0.00 0.00 0.00 2.66
763 808 3.492421 TCGGCTCGTCGTAATAGTTTT 57.508 42.857 0.00 0.00 0.00 2.43
764 809 4.614555 TCGGCTCGTCGTAATAGTTTTA 57.385 40.909 0.00 0.00 0.00 1.52
765 810 4.342772 TCGGCTCGTCGTAATAGTTTTAC 58.657 43.478 0.00 0.00 0.00 2.01
766 811 4.094887 TCGGCTCGTCGTAATAGTTTTACT 59.905 41.667 2.61 0.00 0.00 2.24
767 812 4.795278 CGGCTCGTCGTAATAGTTTTACTT 59.205 41.667 2.61 0.00 0.00 2.24
768 813 5.052764 CGGCTCGTCGTAATAGTTTTACTTC 60.053 44.000 2.61 0.00 0.00 3.01
769 814 6.032717 GGCTCGTCGTAATAGTTTTACTTCT 58.967 40.000 2.61 0.00 0.00 2.85
770 815 7.189512 GGCTCGTCGTAATAGTTTTACTTCTA 58.810 38.462 2.61 0.00 0.00 2.10
771 816 7.375544 GGCTCGTCGTAATAGTTTTACTTCTAG 59.624 40.741 2.61 0.00 0.00 2.43
772 817 7.907563 GCTCGTCGTAATAGTTTTACTTCTAGT 59.092 37.037 2.61 0.00 0.00 2.57
773 818 9.208169 CTCGTCGTAATAGTTTTACTTCTAGTG 57.792 37.037 2.61 0.00 0.00 2.74
774 819 7.693951 TCGTCGTAATAGTTTTACTTCTAGTGC 59.306 37.037 2.61 0.00 0.00 4.40
775 820 7.695618 CGTCGTAATAGTTTTACTTCTAGTGCT 59.304 37.037 2.61 0.00 0.00 4.40
776 821 9.351570 GTCGTAATAGTTTTACTTCTAGTGCTT 57.648 33.333 2.61 0.00 0.00 3.91
777 822 9.918630 TCGTAATAGTTTTACTTCTAGTGCTTT 57.081 29.630 2.61 0.00 0.00 3.51
792 837 4.313522 GTGCTTTCACTCATGAACGTAG 57.686 45.455 0.00 0.00 44.66 3.51
793 838 3.987868 GTGCTTTCACTCATGAACGTAGA 59.012 43.478 0.00 0.00 44.66 2.59
794 839 4.447724 GTGCTTTCACTCATGAACGTAGAA 59.552 41.667 0.00 0.00 44.66 2.10
795 840 5.050363 GTGCTTTCACTCATGAACGTAGAAA 60.050 40.000 0.00 5.11 44.66 2.52
796 841 5.050363 TGCTTTCACTCATGAACGTAGAAAC 60.050 40.000 0.00 2.93 44.66 2.78
797 842 5.177696 GCTTTCACTCATGAACGTAGAAACT 59.822 40.000 0.00 0.00 44.66 2.66
798 843 6.292919 GCTTTCACTCATGAACGTAGAAACTT 60.293 38.462 0.00 0.00 44.66 2.66
799 844 7.548196 TTTCACTCATGAACGTAGAAACTTT 57.452 32.000 0.00 0.00 44.66 2.66
800 845 8.651391 TTTCACTCATGAACGTAGAAACTTTA 57.349 30.769 0.00 0.00 44.66 1.85
801 846 8.651391 TTCACTCATGAACGTAGAAACTTTAA 57.349 30.769 0.00 0.00 40.01 1.52
802 847 8.827177 TCACTCATGAACGTAGAAACTTTAAT 57.173 30.769 0.00 0.00 0.00 1.40
803 848 9.268268 TCACTCATGAACGTAGAAACTTTAATT 57.732 29.630 0.00 0.00 0.00 1.40
804 849 9.878599 CACTCATGAACGTAGAAACTTTAATTT 57.121 29.630 0.00 0.00 0.00 1.82
809 854 9.893305 ATGAACGTAGAAACTTTAATTTTGAGG 57.107 29.630 0.00 0.00 0.00 3.86
810 855 7.858879 TGAACGTAGAAACTTTAATTTTGAGGC 59.141 33.333 0.00 0.00 0.00 4.70
811 856 7.506328 ACGTAGAAACTTTAATTTTGAGGCT 57.494 32.000 0.00 0.00 0.00 4.58
812 857 7.582352 ACGTAGAAACTTTAATTTTGAGGCTC 58.418 34.615 7.79 7.79 0.00 4.70
813 858 7.227910 ACGTAGAAACTTTAATTTTGAGGCTCA 59.772 33.333 14.43 14.43 0.00 4.26
814 859 7.534239 CGTAGAAACTTTAATTTTGAGGCTCAC 59.466 37.037 18.55 0.41 0.00 3.51
815 860 7.346751 AGAAACTTTAATTTTGAGGCTCACA 57.653 32.000 18.55 8.24 0.00 3.58
816 861 7.781056 AGAAACTTTAATTTTGAGGCTCACAA 58.219 30.769 18.55 18.01 0.00 3.33
817 862 8.257306 AGAAACTTTAATTTTGAGGCTCACAAA 58.743 29.630 18.55 19.28 35.81 2.83
818 863 7.770801 AACTTTAATTTTGAGGCTCACAAAC 57.229 32.000 18.55 0.00 37.05 2.93
819 864 7.112452 ACTTTAATTTTGAGGCTCACAAACT 57.888 32.000 18.55 12.84 37.05 2.66
820 865 7.203218 ACTTTAATTTTGAGGCTCACAAACTC 58.797 34.615 18.55 0.00 37.05 3.01
821 866 3.904136 ATTTTGAGGCTCACAAACTCG 57.096 42.857 18.55 0.00 37.05 4.18
822 867 0.944386 TTTGAGGCTCACAAACTCGC 59.056 50.000 18.55 0.00 33.25 5.03
823 868 0.884704 TTGAGGCTCACAAACTCGCC 60.885 55.000 18.55 0.00 42.79 5.54
824 869 1.301716 GAGGCTCACAAACTCGCCA 60.302 57.895 10.25 0.00 44.85 5.69
825 870 0.884704 GAGGCTCACAAACTCGCCAA 60.885 55.000 10.25 0.00 44.85 4.52
826 871 0.886490 AGGCTCACAAACTCGCCAAG 60.886 55.000 0.00 0.00 44.85 3.61
827 872 1.166531 GGCTCACAAACTCGCCAAGT 61.167 55.000 0.00 0.00 42.06 3.16
835 880 2.038387 AACTCGCCAAGTTCACTTGT 57.962 45.000 16.65 0.00 45.28 3.16
836 881 3.188159 AACTCGCCAAGTTCACTTGTA 57.812 42.857 16.65 3.52 45.28 2.41
837 882 3.537580 AACTCGCCAAGTTCACTTGTAA 58.462 40.909 16.65 3.24 45.28 2.41
838 883 4.134563 AACTCGCCAAGTTCACTTGTAAT 58.865 39.130 16.65 0.00 45.28 1.89
839 884 4.578928 AACTCGCCAAGTTCACTTGTAATT 59.421 37.500 16.65 3.49 45.28 1.40
840 885 5.067283 AACTCGCCAAGTTCACTTGTAATTT 59.933 36.000 16.65 3.03 45.28 1.82
841 886 6.405397 AACTCGCCAAGTTCACTTGTAATTTT 60.405 34.615 16.65 3.91 45.28 1.82
842 887 8.364116 AACTCGCCAAGTTCACTTGTAATTTTG 61.364 37.037 16.65 3.04 45.28 2.44
847 892 7.826260 CAAGTTCACTTGTAATTTTGGTGTT 57.174 32.000 11.00 0.00 46.11 3.32
848 893 7.674564 CAAGTTCACTTGTAATTTTGGTGTTG 58.325 34.615 11.00 0.00 46.11 3.33
849 894 6.337356 AGTTCACTTGTAATTTTGGTGTTGG 58.663 36.000 0.00 0.00 0.00 3.77
850 895 5.923733 TCACTTGTAATTTTGGTGTTGGT 57.076 34.783 0.00 0.00 0.00 3.67
851 896 5.897050 TCACTTGTAATTTTGGTGTTGGTC 58.103 37.500 0.00 0.00 0.00 4.02
852 897 4.737765 CACTTGTAATTTTGGTGTTGGTCG 59.262 41.667 0.00 0.00 0.00 4.79
853 898 3.992260 TGTAATTTTGGTGTTGGTCGG 57.008 42.857 0.00 0.00 0.00 4.79
854 899 2.034812 TGTAATTTTGGTGTTGGTCGGC 59.965 45.455 0.00 0.00 0.00 5.54
855 900 1.115467 AATTTTGGTGTTGGTCGGCA 58.885 45.000 0.00 0.00 0.00 5.69
856 901 1.337118 ATTTTGGTGTTGGTCGGCAT 58.663 45.000 0.00 0.00 0.00 4.40
857 902 1.982660 TTTTGGTGTTGGTCGGCATA 58.017 45.000 0.00 0.00 0.00 3.14
858 903 2.208132 TTTGGTGTTGGTCGGCATAT 57.792 45.000 0.00 0.00 0.00 1.78
859 904 2.208132 TTGGTGTTGGTCGGCATATT 57.792 45.000 0.00 0.00 0.00 1.28
860 905 2.208132 TGGTGTTGGTCGGCATATTT 57.792 45.000 0.00 0.00 0.00 1.40
861 906 1.815613 TGGTGTTGGTCGGCATATTTG 59.184 47.619 0.00 0.00 0.00 2.32
862 907 1.134175 GGTGTTGGTCGGCATATTTGG 59.866 52.381 0.00 0.00 0.00 3.28
863 908 1.816224 GTGTTGGTCGGCATATTTGGT 59.184 47.619 0.00 0.00 0.00 3.67
864 909 2.230266 GTGTTGGTCGGCATATTTGGTT 59.770 45.455 0.00 0.00 0.00 3.67
865 910 2.230025 TGTTGGTCGGCATATTTGGTTG 59.770 45.455 0.00 0.00 0.00 3.77
866 911 1.468985 TGGTCGGCATATTTGGTTGG 58.531 50.000 0.00 0.00 0.00 3.77
867 912 1.004862 TGGTCGGCATATTTGGTTGGA 59.995 47.619 0.00 0.00 0.00 3.53
868 913 1.404035 GGTCGGCATATTTGGTTGGAC 59.596 52.381 0.00 0.00 0.00 4.02
869 914 2.088423 GTCGGCATATTTGGTTGGACA 58.912 47.619 0.00 0.00 0.00 4.02
870 915 2.490115 GTCGGCATATTTGGTTGGACAA 59.510 45.455 0.00 0.00 0.00 3.18
871 916 3.130340 GTCGGCATATTTGGTTGGACAAT 59.870 43.478 0.00 0.00 0.00 2.71
872 917 3.380004 TCGGCATATTTGGTTGGACAATC 59.620 43.478 0.00 0.00 0.00 2.67
873 918 3.490761 CGGCATATTTGGTTGGACAATCC 60.491 47.826 0.00 0.00 36.96 3.01
874 919 3.706086 GGCATATTTGGTTGGACAATCCT 59.294 43.478 0.00 0.00 37.46 3.24
875 920 4.202151 GGCATATTTGGTTGGACAATCCTC 60.202 45.833 0.00 0.00 37.46 3.71
876 921 4.402155 GCATATTTGGTTGGACAATCCTCA 59.598 41.667 0.00 0.00 37.46 3.86
877 922 5.069516 GCATATTTGGTTGGACAATCCTCAT 59.930 40.000 0.00 0.00 37.46 2.90
878 923 6.509656 CATATTTGGTTGGACAATCCTCATG 58.490 40.000 0.00 0.00 37.46 3.07
879 924 3.805066 TTGGTTGGACAATCCTCATGA 57.195 42.857 0.00 0.00 37.46 3.07
880 925 3.071874 TGGTTGGACAATCCTCATGAC 57.928 47.619 0.00 0.00 37.46 3.06
881 926 2.290896 TGGTTGGACAATCCTCATGACC 60.291 50.000 0.00 0.00 37.46 4.02
882 927 2.369394 GTTGGACAATCCTCATGACCC 58.631 52.381 0.00 0.00 37.46 4.46
883 928 1.667595 TGGACAATCCTCATGACCCA 58.332 50.000 0.00 0.00 37.46 4.51
884 929 1.991813 TGGACAATCCTCATGACCCAA 59.008 47.619 0.00 0.00 37.46 4.12
885 930 2.378208 TGGACAATCCTCATGACCCAAA 59.622 45.455 0.00 0.00 37.46 3.28
886 931 2.755103 GGACAATCCTCATGACCCAAAC 59.245 50.000 0.00 0.00 32.53 2.93
887 932 2.755103 GACAATCCTCATGACCCAAACC 59.245 50.000 0.00 0.00 0.00 3.27
888 933 2.379907 ACAATCCTCATGACCCAAACCT 59.620 45.455 0.00 0.00 0.00 3.50
889 934 3.181418 ACAATCCTCATGACCCAAACCTT 60.181 43.478 0.00 0.00 0.00 3.50
890 935 4.044065 ACAATCCTCATGACCCAAACCTTA 59.956 41.667 0.00 0.00 0.00 2.69
891 936 5.203528 CAATCCTCATGACCCAAACCTTAT 58.796 41.667 0.00 0.00 0.00 1.73
892 937 6.069088 ACAATCCTCATGACCCAAACCTTATA 60.069 38.462 0.00 0.00 0.00 0.98
893 938 5.367945 TCCTCATGACCCAAACCTTATAC 57.632 43.478 0.00 0.00 0.00 1.47
894 939 4.165372 TCCTCATGACCCAAACCTTATACC 59.835 45.833 0.00 0.00 0.00 2.73
895 940 4.166144 CCTCATGACCCAAACCTTATACCT 59.834 45.833 0.00 0.00 0.00 3.08
896 941 5.368523 CCTCATGACCCAAACCTTATACCTA 59.631 44.000 0.00 0.00 0.00 3.08
897 942 6.044404 CCTCATGACCCAAACCTTATACCTAT 59.956 42.308 0.00 0.00 0.00 2.57
898 943 6.837312 TCATGACCCAAACCTTATACCTATG 58.163 40.000 0.00 0.00 0.00 2.23
899 944 6.617784 TCATGACCCAAACCTTATACCTATGA 59.382 38.462 0.00 0.00 0.00 2.15
900 945 6.243216 TGACCCAAACCTTATACCTATGAC 57.757 41.667 0.00 0.00 0.00 3.06
901 946 5.131475 TGACCCAAACCTTATACCTATGACC 59.869 44.000 0.00 0.00 0.00 4.02
902 947 5.294473 ACCCAAACCTTATACCTATGACCT 58.706 41.667 0.00 0.00 0.00 3.85
903 948 5.734634 ACCCAAACCTTATACCTATGACCTT 59.265 40.000 0.00 0.00 0.00 3.50
904 949 6.218938 ACCCAAACCTTATACCTATGACCTTT 59.781 38.462 0.00 0.00 0.00 3.11
905 950 6.546034 CCCAAACCTTATACCTATGACCTTTG 59.454 42.308 0.00 0.00 0.00 2.77
906 951 6.039382 CCAAACCTTATACCTATGACCTTTGC 59.961 42.308 0.00 0.00 0.00 3.68
907 952 6.576778 AACCTTATACCTATGACCTTTGCT 57.423 37.500 0.00 0.00 0.00 3.91
908 953 6.576778 ACCTTATACCTATGACCTTTGCTT 57.423 37.500 0.00 0.00 0.00 3.91
909 954 6.970191 ACCTTATACCTATGACCTTTGCTTT 58.030 36.000 0.00 0.00 0.00 3.51
910 955 7.410991 ACCTTATACCTATGACCTTTGCTTTT 58.589 34.615 0.00 0.00 0.00 2.27
911 956 7.339466 ACCTTATACCTATGACCTTTGCTTTTG 59.661 37.037 0.00 0.00 0.00 2.44
912 957 7.201821 CCTTATACCTATGACCTTTGCTTTTGG 60.202 40.741 0.00 0.00 0.00 3.28
913 958 3.844640 ACCTATGACCTTTGCTTTTGGT 58.155 40.909 0.00 0.00 36.70 3.67
914 959 4.223144 ACCTATGACCTTTGCTTTTGGTT 58.777 39.130 0.00 0.00 33.74 3.67
915 960 4.039124 ACCTATGACCTTTGCTTTTGGTTG 59.961 41.667 0.00 0.00 33.74 3.77
916 961 4.280677 CCTATGACCTTTGCTTTTGGTTGA 59.719 41.667 0.00 0.00 33.74 3.18
917 962 4.751767 ATGACCTTTGCTTTTGGTTGAA 57.248 36.364 0.00 0.00 33.74 2.69
918 963 4.751767 TGACCTTTGCTTTTGGTTGAAT 57.248 36.364 0.00 0.00 33.74 2.57
919 964 5.860941 TGACCTTTGCTTTTGGTTGAATA 57.139 34.783 0.00 0.00 33.74 1.75
920 965 6.227298 TGACCTTTGCTTTTGGTTGAATAA 57.773 33.333 0.00 0.00 33.74 1.40
921 966 6.644347 TGACCTTTGCTTTTGGTTGAATAAA 58.356 32.000 0.00 0.00 33.74 1.40
922 967 6.760770 TGACCTTTGCTTTTGGTTGAATAAAG 59.239 34.615 0.00 0.00 33.74 1.85
923 968 6.883744 ACCTTTGCTTTTGGTTGAATAAAGA 58.116 32.000 0.00 0.00 32.03 2.52
924 969 7.508687 ACCTTTGCTTTTGGTTGAATAAAGAT 58.491 30.769 0.00 0.00 32.03 2.40
925 970 7.442062 ACCTTTGCTTTTGGTTGAATAAAGATG 59.558 33.333 0.00 0.00 32.03 2.90
926 971 7.095102 CCTTTGCTTTTGGTTGAATAAAGATGG 60.095 37.037 0.00 0.00 32.03 3.51
927 972 6.418057 TGCTTTTGGTTGAATAAAGATGGT 57.582 33.333 0.00 0.00 32.03 3.55
928 973 6.222389 TGCTTTTGGTTGAATAAAGATGGTG 58.778 36.000 0.00 0.00 32.03 4.17
929 974 6.041409 TGCTTTTGGTTGAATAAAGATGGTGA 59.959 34.615 0.00 0.00 32.03 4.02
930 975 6.587608 GCTTTTGGTTGAATAAAGATGGTGAG 59.412 38.462 0.00 0.00 32.03 3.51
931 976 7.595819 TTTTGGTTGAATAAAGATGGTGAGT 57.404 32.000 0.00 0.00 0.00 3.41
932 977 7.595819 TTTGGTTGAATAAAGATGGTGAGTT 57.404 32.000 0.00 0.00 0.00 3.01
933 978 7.595819 TTGGTTGAATAAAGATGGTGAGTTT 57.404 32.000 0.00 0.00 0.00 2.66
934 979 7.214467 TGGTTGAATAAAGATGGTGAGTTTC 57.786 36.000 0.00 0.00 0.00 2.78
935 980 7.004086 TGGTTGAATAAAGATGGTGAGTTTCT 58.996 34.615 0.00 0.00 0.00 2.52
936 981 7.505585 TGGTTGAATAAAGATGGTGAGTTTCTT 59.494 33.333 0.00 0.00 0.00 2.52
937 982 8.360390 GGTTGAATAAAGATGGTGAGTTTCTTT 58.640 33.333 0.00 0.00 41.33 2.52
967 1012 7.859325 AAAAACTCACATGTAACTGTACACT 57.141 32.000 0.00 0.00 42.99 3.55
968 1013 6.844696 AAACTCACATGTAACTGTACACTG 57.155 37.500 0.00 0.00 42.99 3.66
969 1014 4.307432 ACTCACATGTAACTGTACACTGC 58.693 43.478 0.00 0.00 42.99 4.40
970 1015 4.039245 ACTCACATGTAACTGTACACTGCT 59.961 41.667 0.00 0.00 42.99 4.24
971 1016 4.956085 TCACATGTAACTGTACACTGCTT 58.044 39.130 0.00 0.00 42.99 3.91
972 1017 5.364778 TCACATGTAACTGTACACTGCTTT 58.635 37.500 0.00 0.00 42.99 3.51
973 1018 5.465390 TCACATGTAACTGTACACTGCTTTC 59.535 40.000 0.00 0.00 42.99 2.62
974 1019 4.755123 ACATGTAACTGTACACTGCTTTCC 59.245 41.667 0.00 0.00 42.99 3.13
975 1020 3.735591 TGTAACTGTACACTGCTTTCCC 58.264 45.455 0.00 0.00 35.23 3.97
976 1021 3.389983 TGTAACTGTACACTGCTTTCCCT 59.610 43.478 0.00 0.00 35.23 4.20
977 1022 2.841442 ACTGTACACTGCTTTCCCTC 57.159 50.000 0.00 0.00 0.00 4.30
978 1023 2.047061 ACTGTACACTGCTTTCCCTCA 58.953 47.619 0.00 0.00 0.00 3.86
979 1024 2.639839 ACTGTACACTGCTTTCCCTCAT 59.360 45.455 0.00 0.00 0.00 2.90
980 1025 3.265791 CTGTACACTGCTTTCCCTCATC 58.734 50.000 0.00 0.00 0.00 2.92
981 1026 2.637382 TGTACACTGCTTTCCCTCATCA 59.363 45.455 0.00 0.00 0.00 3.07
982 1027 2.486472 ACACTGCTTTCCCTCATCAG 57.514 50.000 0.00 0.00 0.00 2.90
983 1028 1.980765 ACACTGCTTTCCCTCATCAGA 59.019 47.619 0.00 0.00 0.00 3.27
984 1029 2.289945 ACACTGCTTTCCCTCATCAGAC 60.290 50.000 0.00 0.00 0.00 3.51
985 1030 1.280421 ACTGCTTTCCCTCATCAGACC 59.720 52.381 0.00 0.00 0.00 3.85
986 1031 0.620556 TGCTTTCCCTCATCAGACCC 59.379 55.000 0.00 0.00 0.00 4.46
987 1032 0.106967 GCTTTCCCTCATCAGACCCC 60.107 60.000 0.00 0.00 0.00 4.95
988 1033 0.548510 CTTTCCCTCATCAGACCCCC 59.451 60.000 0.00 0.00 0.00 5.40
1127 1172 2.974717 GCTCCCCCGCTCTATAGC 59.025 66.667 0.00 0.00 45.86 2.97
1147 1192 2.569404 GCATCTAGCCCTAGCCAACTAT 59.431 50.000 0.00 0.00 41.25 2.12
1148 1193 3.368948 GCATCTAGCCCTAGCCAACTATC 60.369 52.174 0.00 0.00 41.25 2.08
1149 1194 2.890814 TCTAGCCCTAGCCAACTATCC 58.109 52.381 0.00 0.00 41.25 2.59
1230 1275 1.375396 CATCCCGGCAGACGTTGAA 60.375 57.895 0.00 0.00 42.24 2.69
1465 1510 2.699809 CTCTGATTGCGCTGCGTC 59.300 61.111 24.04 15.82 0.00 5.19
1469 1514 2.571611 GATTGCGCTGCGTCGTTG 60.572 61.111 24.04 0.00 0.00 4.10
1514 1559 8.971321 GCGATTCGGTACAGATTTAAGTTATTA 58.029 33.333 8.34 0.00 0.00 0.98
1531 1576 3.885484 ATTATCTATGCAACGCAGTGC 57.115 42.857 4.58 4.58 45.00 4.40
1544 1589 1.321743 CGCAGTGCTACGATCTGTTTC 59.678 52.381 14.33 0.00 0.00 2.78
1546 1591 2.996621 GCAGTGCTACGATCTGTTTCTT 59.003 45.455 8.18 0.00 0.00 2.52
1593 1648 9.398170 CGATGTTTGATTTCTGTAGTTGAATTT 57.602 29.630 0.00 0.00 0.00 1.82
1621 1676 5.888161 AGGTAGCCAATTTTTCTGTATGGAG 59.112 40.000 0.00 0.00 32.82 3.86
1660 1716 6.995511 TTTTTAACTGAGTTGTACTGCTGT 57.004 33.333 8.33 0.66 0.00 4.40
1670 1726 9.760660 CTGAGTTGTACTGCTGTTTAATAATTC 57.239 33.333 0.09 0.00 0.00 2.17
1760 1865 2.158608 GGCAGAAATAGGGTAGGTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
1764 1870 5.770162 GCAGAAATAGGGTAGGTGCATATTT 59.230 40.000 0.00 0.00 0.00 1.40
1765 1871 6.072452 GCAGAAATAGGGTAGGTGCATATTTC 60.072 42.308 14.59 14.59 40.60 2.17
1766 1872 6.998074 CAGAAATAGGGTAGGTGCATATTTCA 59.002 38.462 20.54 0.00 41.79 2.69
1767 1873 7.173907 CAGAAATAGGGTAGGTGCATATTTCAG 59.826 40.741 20.54 13.30 41.79 3.02
1770 1876 5.450818 AGGGTAGGTGCATATTTCAGAAA 57.549 39.130 0.00 0.00 0.00 2.52
1788 1894 1.398692 AATGTGTGCCACTTTCGGTT 58.601 45.000 0.00 0.00 35.11 4.44
1792 1898 1.265905 GTGTGCCACTTTCGGTTTAGG 59.734 52.381 0.00 0.00 0.00 2.69
1800 1906 4.998672 CCACTTTCGGTTTAGGAATGTGTA 59.001 41.667 15.05 0.00 42.95 2.90
1839 1945 1.901159 TGTGCAATTTGGCCAGCTTAT 59.099 42.857 15.02 1.61 0.00 1.73
1912 2109 9.499479 CATCATTCTAGGAGTAGCATTTATGTT 57.501 33.333 0.00 0.00 0.00 2.71
1927 2124 8.680903 AGCATTTATGTTCTTTAGTGATCTTGG 58.319 33.333 0.00 0.00 0.00 3.61
1933 2130 5.592282 TGTTCTTTAGTGATCTTGGTTTGCA 59.408 36.000 0.00 0.00 0.00 4.08
1953 2150 3.740141 GCAATTGCTGATTGGAATGGAGG 60.740 47.826 23.21 0.00 44.34 4.30
1957 2154 2.175284 TGCTGATTGGAATGGAGGCATA 59.825 45.455 0.00 0.00 0.00 3.14
1961 2158 5.128033 TGATTGGAATGGAGGCATAGAAA 57.872 39.130 0.00 0.00 0.00 2.52
1972 2169 5.897250 TGGAGGCATAGAAACTCATGTAGTA 59.103 40.000 0.00 0.00 37.50 1.82
2064 2292 5.434352 ACATTTATCTCATGCACATGCTC 57.566 39.130 5.73 0.00 42.66 4.26
2080 2308 1.213678 TGCTCTGCCATCTTATTGCCT 59.786 47.619 0.00 0.00 0.00 4.75
2087 2315 5.366768 TCTGCCATCTTATTGCCTAGTTAGT 59.633 40.000 0.00 0.00 0.00 2.24
2135 2363 9.517609 AACTACATGACGATCACTTTATCTTAC 57.482 33.333 0.00 0.00 0.00 2.34
2138 2366 8.412608 ACATGACGATCACTTTATCTTACTTG 57.587 34.615 0.00 0.00 0.00 3.16
2139 2367 8.035394 ACATGACGATCACTTTATCTTACTTGT 58.965 33.333 0.00 0.00 0.00 3.16
2140 2368 8.873830 CATGACGATCACTTTATCTTACTTGTT 58.126 33.333 0.00 0.00 0.00 2.83
2141 2369 8.827177 TGACGATCACTTTATCTTACTTGTTT 57.173 30.769 0.00 0.00 0.00 2.83
2142 2370 8.708742 TGACGATCACTTTATCTTACTTGTTTG 58.291 33.333 0.00 0.00 0.00 2.93
2301 2529 9.939424 AGTAGTGGGTCTTTATATTAGAAGAGT 57.061 33.333 0.00 0.00 32.91 3.24
2342 2574 4.400567 AGCTAGGCATTGAAATTTCACCTC 59.599 41.667 24.56 15.30 36.83 3.85
2360 2592 0.790207 TCGCTAAAGCTCAAAGCACG 59.210 50.000 13.41 1.07 45.56 5.34
2365 2597 3.619038 GCTAAAGCTCAAAGCACGTATCT 59.381 43.478 9.37 0.00 45.56 1.98
2373 2605 5.107065 GCTCAAAGCACGTATCTAAACAGTT 60.107 40.000 0.00 0.00 41.89 3.16
2374 2606 6.462073 TCAAAGCACGTATCTAAACAGTTC 57.538 37.500 0.00 0.00 0.00 3.01
2375 2607 5.986741 TCAAAGCACGTATCTAAACAGTTCA 59.013 36.000 0.00 0.00 0.00 3.18
2387 2619 6.393990 TCTAAACAGTTCATTCTCTCTCTGC 58.606 40.000 0.00 0.00 0.00 4.26
2389 2621 2.235898 ACAGTTCATTCTCTCTCTGCCC 59.764 50.000 0.00 0.00 0.00 5.36
2391 2623 1.556911 GTTCATTCTCTCTCTGCCCCA 59.443 52.381 0.00 0.00 0.00 4.96
2397 2629 0.183014 CTCTCTCTGCCCCATTGCAT 59.817 55.000 0.00 0.00 41.16 3.96
2398 2630 0.627451 TCTCTCTGCCCCATTGCATT 59.373 50.000 0.00 0.00 41.16 3.56
2399 2631 0.744874 CTCTCTGCCCCATTGCATTG 59.255 55.000 1.49 1.49 41.16 2.82
2400 2632 1.143183 CTCTGCCCCATTGCATTGC 59.857 57.895 0.46 0.46 41.16 3.56
2421 2653 6.233905 TGCTTGCTTATTCTGATACCTACA 57.766 37.500 0.00 0.00 0.00 2.74
2435 2667 9.932207 TCTGATACCTACAAAATTCTTACGAAA 57.068 29.630 0.00 0.00 31.91 3.46
2438 2670 9.374838 GATACCTACAAAATTCTTACGAAAGGA 57.625 33.333 2.97 0.00 33.22 3.36
2439 2671 9.901172 ATACCTACAAAATTCTTACGAAAGGAT 57.099 29.630 2.97 0.00 31.74 3.24
2440 2672 8.265165 ACCTACAAAATTCTTACGAAAGGATC 57.735 34.615 2.97 0.00 28.82 3.36
2463 2696 4.620982 GAACAATTTTACACTGGCTGCTT 58.379 39.130 0.00 0.00 0.00 3.91
2472 2705 3.084786 ACACTGGCTGCTTTATTTCTCC 58.915 45.455 0.00 0.00 0.00 3.71
2488 2721 9.816354 TTTATTTCTCCTTCAAGAAAAACAAGG 57.184 29.630 3.45 0.00 45.62 3.61
2492 2725 5.359860 TCTCCTTCAAGAAAAACAAGGGAAC 59.640 40.000 0.00 0.00 36.75 3.62
2523 2757 6.766084 CGAGAGCATTAGTTCTTAACTTTGG 58.234 40.000 0.00 0.00 42.81 3.28
2676 2910 0.524862 CACCTGCAGCCAAATCACTC 59.475 55.000 8.66 0.00 0.00 3.51
2877 3111 6.042437 AGGAATTGAAGAGGCAAAATGTTTCT 59.958 34.615 0.00 0.00 0.00 2.52
2955 3189 5.660864 CCTAGAGGTCTTCAGAGGAATTCTT 59.339 44.000 5.23 0.00 34.60 2.52
3015 3249 1.012486 CACTGTACCGAAACCTCGCC 61.012 60.000 0.00 0.00 44.04 5.54
3077 3311 4.021925 GCTGGTGGAAGCGGAGGT 62.022 66.667 0.00 0.00 45.47 3.85
3129 3363 2.741612 GATCTCCTCGTCATCTTGCAG 58.258 52.381 0.00 0.00 0.00 4.41
3130 3364 1.839424 TCTCCTCGTCATCTTGCAGA 58.161 50.000 0.00 0.00 0.00 4.26
3201 3435 3.083997 ACCGCCCAGAGGATGACC 61.084 66.667 0.00 0.00 33.47 4.02
3213 3447 0.179081 GGATGACCAGCCGGAACTAC 60.179 60.000 5.05 0.00 35.59 2.73
3250 3484 0.105593 CTATCTGATGTGCGGGCAGT 59.894 55.000 0.00 0.00 0.00 4.40
3345 3579 2.419324 CAGGCTGTTTGATGCTCTTCTC 59.581 50.000 6.28 0.00 0.00 2.87
3350 3584 2.072298 GTTTGATGCTCTTCTCGCTGT 58.928 47.619 0.00 0.00 0.00 4.40
3360 3594 1.806461 TTCTCGCTGTCGGCTTCACT 61.806 55.000 1.37 0.00 39.13 3.41
3416 3650 4.438880 GCAGAAGAGCTGTATACTGTCGAA 60.439 45.833 10.96 0.00 46.62 3.71
3426 3660 4.779475 CTGTCGAACAGGGCAAGT 57.221 55.556 7.01 0.00 42.35 3.16
3463 3697 2.205074 CATGTTATGCCCTCTGTCGAC 58.795 52.381 9.11 9.11 0.00 4.20
3624 3867 5.504665 GCGTAACTAAGAGCATGCATGATTT 60.505 40.000 30.64 17.12 0.00 2.17
3675 3919 1.748879 GGTTGCTCCGCTGCCATAA 60.749 57.895 0.00 0.00 0.00 1.90
3836 4222 0.178885 AGGTGCCAACTACCCAGGTA 60.179 55.000 0.00 0.00 39.05 3.08
3837 4223 0.035725 GGTGCCAACTACCCAGGTAC 60.036 60.000 0.00 0.00 37.31 3.34
3838 4224 0.981943 GTGCCAACTACCCAGGTACT 59.018 55.000 0.00 0.00 43.88 2.73
3934 4321 1.375523 CGGTACAACTGCTCCACCC 60.376 63.158 0.00 0.00 0.00 4.61
3984 4375 3.313526 ACACTTCAGCATGTTGTTCTCAC 59.686 43.478 9.54 0.00 37.40 3.51
3990 4381 0.439985 CATGTTGTTCTCACGCTCCG 59.560 55.000 0.00 0.00 0.00 4.63
3993 4384 1.005037 TTGTTCTCACGCTCCGCAT 60.005 52.632 0.00 0.00 0.00 4.73
3997 4388 2.867333 TTCTCACGCTCCGCATCGTC 62.867 60.000 0.00 0.00 36.73 4.20
4008 4551 2.047274 CATCGTCGGCCAGGTGTT 60.047 61.111 2.24 0.00 0.00 3.32
4046 4594 4.732065 ACATGATTGTCCATGCCATATGA 58.268 39.130 3.65 0.00 45.79 2.15
4361 4926 4.030216 TGCCCAAGAAAGAAAGAAAAGGT 58.970 39.130 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 4.881273 TCAATCAGCCCACACATACAATAC 59.119 41.667 0.00 0.00 0.00 1.89
322 359 1.671054 GTATGCATATGCGGCCGGT 60.671 57.895 29.38 6.93 45.83 5.28
516 560 2.268920 GATGCAGTCGGCCAAGGA 59.731 61.111 2.24 0.00 43.89 3.36
741 786 4.818534 AAACTATTACGACGAGCCGATA 57.181 40.909 0.00 0.00 0.00 2.92
742 787 3.705043 AAACTATTACGACGAGCCGAT 57.295 42.857 0.00 0.00 0.00 4.18
743 788 3.492421 AAAACTATTACGACGAGCCGA 57.508 42.857 0.00 0.00 0.00 5.54
744 789 4.346129 AGTAAAACTATTACGACGAGCCG 58.654 43.478 0.00 0.00 0.00 5.52
745 790 6.032717 AGAAGTAAAACTATTACGACGAGCC 58.967 40.000 0.00 0.00 0.00 4.70
746 791 7.907563 ACTAGAAGTAAAACTATTACGACGAGC 59.092 37.037 0.00 0.00 0.00 5.03
747 792 9.208169 CACTAGAAGTAAAACTATTACGACGAG 57.792 37.037 0.00 0.00 0.00 4.18
748 793 7.693951 GCACTAGAAGTAAAACTATTACGACGA 59.306 37.037 0.00 0.00 0.00 4.20
749 794 7.695618 AGCACTAGAAGTAAAACTATTACGACG 59.304 37.037 0.00 0.00 0.00 5.12
750 795 8.908172 AGCACTAGAAGTAAAACTATTACGAC 57.092 34.615 0.00 0.00 0.00 4.34
751 796 9.918630 AAAGCACTAGAAGTAAAACTATTACGA 57.081 29.630 0.00 0.00 0.00 3.43
771 816 3.987868 TCTACGTTCATGAGTGAAAGCAC 59.012 43.478 0.00 0.00 45.38 4.40
772 817 4.251543 TCTACGTTCATGAGTGAAAGCA 57.748 40.909 0.00 0.00 45.38 3.91
773 818 5.177696 AGTTTCTACGTTCATGAGTGAAAGC 59.822 40.000 0.00 0.00 45.38 3.51
774 819 6.771188 AGTTTCTACGTTCATGAGTGAAAG 57.229 37.500 0.00 3.20 45.38 2.62
775 820 7.548196 AAAGTTTCTACGTTCATGAGTGAAA 57.452 32.000 0.00 2.86 45.38 2.69
776 821 8.651391 TTAAAGTTTCTACGTTCATGAGTGAA 57.349 30.769 0.00 0.00 41.89 3.18
777 822 8.827177 ATTAAAGTTTCTACGTTCATGAGTGA 57.173 30.769 0.00 0.00 0.00 3.41
778 823 9.878599 AAATTAAAGTTTCTACGTTCATGAGTG 57.121 29.630 0.00 0.00 0.00 3.51
783 828 9.893305 CCTCAAAATTAAAGTTTCTACGTTCAT 57.107 29.630 0.00 0.00 0.00 2.57
784 829 7.858879 GCCTCAAAATTAAAGTTTCTACGTTCA 59.141 33.333 0.00 0.00 0.00 3.18
785 830 8.074370 AGCCTCAAAATTAAAGTTTCTACGTTC 58.926 33.333 0.00 0.00 0.00 3.95
786 831 7.937649 AGCCTCAAAATTAAAGTTTCTACGTT 58.062 30.769 0.00 0.00 0.00 3.99
787 832 7.227910 TGAGCCTCAAAATTAAAGTTTCTACGT 59.772 33.333 0.00 0.00 0.00 3.57
788 833 7.534239 GTGAGCCTCAAAATTAAAGTTTCTACG 59.466 37.037 0.00 0.00 0.00 3.51
789 834 8.349983 TGTGAGCCTCAAAATTAAAGTTTCTAC 58.650 33.333 0.00 0.00 0.00 2.59
790 835 8.458573 TGTGAGCCTCAAAATTAAAGTTTCTA 57.541 30.769 0.00 0.00 0.00 2.10
791 836 7.346751 TGTGAGCCTCAAAATTAAAGTTTCT 57.653 32.000 0.00 0.00 0.00 2.52
792 837 8.328146 GTTTGTGAGCCTCAAAATTAAAGTTTC 58.672 33.333 0.00 0.00 36.71 2.78
793 838 8.040727 AGTTTGTGAGCCTCAAAATTAAAGTTT 58.959 29.630 0.00 0.00 36.71 2.66
794 839 7.555965 AGTTTGTGAGCCTCAAAATTAAAGTT 58.444 30.769 0.00 0.00 36.71 2.66
795 840 7.112452 AGTTTGTGAGCCTCAAAATTAAAGT 57.888 32.000 0.00 0.00 36.71 2.66
796 841 6.360681 CGAGTTTGTGAGCCTCAAAATTAAAG 59.639 38.462 0.00 0.00 36.71 1.85
797 842 6.205784 CGAGTTTGTGAGCCTCAAAATTAAA 58.794 36.000 0.00 0.00 36.71 1.52
798 843 5.757886 CGAGTTTGTGAGCCTCAAAATTAA 58.242 37.500 0.00 0.00 36.71 1.40
799 844 4.320202 GCGAGTTTGTGAGCCTCAAAATTA 60.320 41.667 0.00 0.00 36.71 1.40
800 845 3.550842 GCGAGTTTGTGAGCCTCAAAATT 60.551 43.478 0.00 0.00 36.71 1.82
801 846 2.030805 GCGAGTTTGTGAGCCTCAAAAT 60.031 45.455 0.00 0.00 36.71 1.82
802 847 1.333619 GCGAGTTTGTGAGCCTCAAAA 59.666 47.619 0.00 0.00 36.71 2.44
803 848 0.944386 GCGAGTTTGTGAGCCTCAAA 59.056 50.000 0.00 0.00 33.28 2.69
804 849 0.884704 GGCGAGTTTGTGAGCCTCAA 60.885 55.000 0.00 0.00 45.67 3.02
805 850 1.301716 GGCGAGTTTGTGAGCCTCA 60.302 57.895 0.00 0.00 45.67 3.86
806 851 3.567473 GGCGAGTTTGTGAGCCTC 58.433 61.111 0.00 0.00 45.67 4.70
807 852 4.968103 AACTTGGCGAGTTTGTGAGCCT 62.968 50.000 14.48 0.00 46.34 4.58
808 853 2.682469 AACTTGGCGAGTTTGTGAGCC 61.682 52.381 14.48 0.00 46.34 4.70
809 854 0.663153 AACTTGGCGAGTTTGTGAGC 59.337 50.000 14.48 0.00 46.34 4.26
824 869 6.816140 CCAACACCAAAATTACAAGTGAACTT 59.184 34.615 0.00 0.00 36.45 2.66
825 870 6.071051 ACCAACACCAAAATTACAAGTGAACT 60.071 34.615 0.00 0.00 32.76 3.01
826 871 6.103330 ACCAACACCAAAATTACAAGTGAAC 58.897 36.000 0.00 0.00 32.76 3.18
827 872 6.287589 ACCAACACCAAAATTACAAGTGAA 57.712 33.333 0.00 0.00 32.76 3.18
828 873 5.449314 CGACCAACACCAAAATTACAAGTGA 60.449 40.000 0.00 0.00 32.76 3.41
829 874 4.737765 CGACCAACACCAAAATTACAAGTG 59.262 41.667 0.00 0.00 34.61 3.16
830 875 4.202070 CCGACCAACACCAAAATTACAAGT 60.202 41.667 0.00 0.00 0.00 3.16
831 876 4.295051 CCGACCAACACCAAAATTACAAG 58.705 43.478 0.00 0.00 0.00 3.16
832 877 3.491104 GCCGACCAACACCAAAATTACAA 60.491 43.478 0.00 0.00 0.00 2.41
833 878 2.034812 GCCGACCAACACCAAAATTACA 59.965 45.455 0.00 0.00 0.00 2.41
834 879 2.034812 TGCCGACCAACACCAAAATTAC 59.965 45.455 0.00 0.00 0.00 1.89
835 880 2.307768 TGCCGACCAACACCAAAATTA 58.692 42.857 0.00 0.00 0.00 1.40
836 881 1.115467 TGCCGACCAACACCAAAATT 58.885 45.000 0.00 0.00 0.00 1.82
837 882 1.337118 ATGCCGACCAACACCAAAAT 58.663 45.000 0.00 0.00 0.00 1.82
838 883 1.982660 TATGCCGACCAACACCAAAA 58.017 45.000 0.00 0.00 0.00 2.44
839 884 2.208132 ATATGCCGACCAACACCAAA 57.792 45.000 0.00 0.00 0.00 3.28
840 885 2.208132 AATATGCCGACCAACACCAA 57.792 45.000 0.00 0.00 0.00 3.67
841 886 1.815613 CAAATATGCCGACCAACACCA 59.184 47.619 0.00 0.00 0.00 4.17
842 887 1.134175 CCAAATATGCCGACCAACACC 59.866 52.381 0.00 0.00 0.00 4.16
843 888 1.816224 ACCAAATATGCCGACCAACAC 59.184 47.619 0.00 0.00 0.00 3.32
844 889 2.208132 ACCAAATATGCCGACCAACA 57.792 45.000 0.00 0.00 0.00 3.33
845 890 2.416701 CCAACCAAATATGCCGACCAAC 60.417 50.000 0.00 0.00 0.00 3.77
846 891 1.821753 CCAACCAAATATGCCGACCAA 59.178 47.619 0.00 0.00 0.00 3.67
847 892 1.004862 TCCAACCAAATATGCCGACCA 59.995 47.619 0.00 0.00 0.00 4.02
848 893 1.404035 GTCCAACCAAATATGCCGACC 59.596 52.381 0.00 0.00 0.00 4.79
849 894 2.088423 TGTCCAACCAAATATGCCGAC 58.912 47.619 0.00 0.00 0.00 4.79
850 895 2.498644 TGTCCAACCAAATATGCCGA 57.501 45.000 0.00 0.00 0.00 5.54
851 896 3.490761 GGATTGTCCAACCAAATATGCCG 60.491 47.826 0.00 0.00 36.28 5.69
852 897 3.706086 AGGATTGTCCAACCAAATATGCC 59.294 43.478 0.00 0.00 39.61 4.40
853 898 4.402155 TGAGGATTGTCCAACCAAATATGC 59.598 41.667 0.00 0.00 39.61 3.14
854 899 6.321945 TCATGAGGATTGTCCAACCAAATATG 59.678 38.462 0.00 0.00 39.61 1.78
855 900 6.322201 GTCATGAGGATTGTCCAACCAAATAT 59.678 38.462 0.00 0.00 39.61 1.28
856 901 5.652014 GTCATGAGGATTGTCCAACCAAATA 59.348 40.000 0.00 0.00 39.61 1.40
857 902 4.463891 GTCATGAGGATTGTCCAACCAAAT 59.536 41.667 0.00 0.00 39.61 2.32
858 903 3.826157 GTCATGAGGATTGTCCAACCAAA 59.174 43.478 0.00 0.00 39.61 3.28
859 904 3.420893 GTCATGAGGATTGTCCAACCAA 58.579 45.455 0.00 0.00 39.61 3.67
860 905 2.290896 GGTCATGAGGATTGTCCAACCA 60.291 50.000 0.00 0.00 39.61 3.67
861 906 2.369394 GGTCATGAGGATTGTCCAACC 58.631 52.381 0.00 0.00 39.61 3.77
862 907 2.290896 TGGGTCATGAGGATTGTCCAAC 60.291 50.000 0.00 0.00 39.61 3.77
863 908 1.991813 TGGGTCATGAGGATTGTCCAA 59.008 47.619 0.00 0.00 39.61 3.53
864 909 1.667595 TGGGTCATGAGGATTGTCCA 58.332 50.000 0.00 0.00 39.61 4.02
865 910 2.755103 GTTTGGGTCATGAGGATTGTCC 59.245 50.000 0.00 0.00 36.58 4.02
866 911 2.755103 GGTTTGGGTCATGAGGATTGTC 59.245 50.000 0.00 0.00 0.00 3.18
867 912 2.379907 AGGTTTGGGTCATGAGGATTGT 59.620 45.455 0.00 0.00 0.00 2.71
868 913 3.091633 AGGTTTGGGTCATGAGGATTG 57.908 47.619 0.00 0.00 0.00 2.67
869 914 3.833559 AAGGTTTGGGTCATGAGGATT 57.166 42.857 0.00 0.00 0.00 3.01
870 915 5.163088 GGTATAAGGTTTGGGTCATGAGGAT 60.163 44.000 0.00 0.00 0.00 3.24
871 916 4.165372 GGTATAAGGTTTGGGTCATGAGGA 59.835 45.833 0.00 0.00 0.00 3.71
872 917 4.166144 AGGTATAAGGTTTGGGTCATGAGG 59.834 45.833 0.00 0.00 0.00 3.86
873 918 5.373812 AGGTATAAGGTTTGGGTCATGAG 57.626 43.478 0.00 0.00 0.00 2.90
874 919 6.617784 TCATAGGTATAAGGTTTGGGTCATGA 59.382 38.462 0.00 0.00 0.00 3.07
875 920 6.710744 GTCATAGGTATAAGGTTTGGGTCATG 59.289 42.308 0.00 0.00 0.00 3.07
876 921 6.183361 GGTCATAGGTATAAGGTTTGGGTCAT 60.183 42.308 0.00 0.00 0.00 3.06
877 922 5.131475 GGTCATAGGTATAAGGTTTGGGTCA 59.869 44.000 0.00 0.00 0.00 4.02
878 923 5.368816 AGGTCATAGGTATAAGGTTTGGGTC 59.631 44.000 0.00 0.00 0.00 4.46
879 924 5.294473 AGGTCATAGGTATAAGGTTTGGGT 58.706 41.667 0.00 0.00 0.00 4.51
880 925 5.906772 AGGTCATAGGTATAAGGTTTGGG 57.093 43.478 0.00 0.00 0.00 4.12
881 926 6.039382 GCAAAGGTCATAGGTATAAGGTTTGG 59.961 42.308 0.00 0.00 0.00 3.28
882 927 6.828785 AGCAAAGGTCATAGGTATAAGGTTTG 59.171 38.462 0.00 0.00 0.00 2.93
883 928 6.970191 AGCAAAGGTCATAGGTATAAGGTTT 58.030 36.000 0.00 0.00 0.00 3.27
884 929 6.576778 AGCAAAGGTCATAGGTATAAGGTT 57.423 37.500 0.00 0.00 0.00 3.50
885 930 6.576778 AAGCAAAGGTCATAGGTATAAGGT 57.423 37.500 0.00 0.00 0.00 3.50
886 931 7.201821 CCAAAAGCAAAGGTCATAGGTATAAGG 60.202 40.741 0.00 0.00 0.00 2.69
887 932 7.339466 ACCAAAAGCAAAGGTCATAGGTATAAG 59.661 37.037 0.00 0.00 0.00 1.73
888 933 7.179269 ACCAAAAGCAAAGGTCATAGGTATAA 58.821 34.615 0.00 0.00 0.00 0.98
889 934 6.727394 ACCAAAAGCAAAGGTCATAGGTATA 58.273 36.000 0.00 0.00 0.00 1.47
890 935 5.580022 ACCAAAAGCAAAGGTCATAGGTAT 58.420 37.500 0.00 0.00 0.00 2.73
891 936 4.993028 ACCAAAAGCAAAGGTCATAGGTA 58.007 39.130 0.00 0.00 0.00 3.08
892 937 3.844640 ACCAAAAGCAAAGGTCATAGGT 58.155 40.909 0.00 0.00 0.00 3.08
893 938 4.280677 TCAACCAAAAGCAAAGGTCATAGG 59.719 41.667 0.00 0.00 33.74 2.57
894 939 5.452078 TCAACCAAAAGCAAAGGTCATAG 57.548 39.130 0.00 0.00 33.74 2.23
895 940 5.860941 TTCAACCAAAAGCAAAGGTCATA 57.139 34.783 0.00 0.00 33.74 2.15
896 941 4.751767 TTCAACCAAAAGCAAAGGTCAT 57.248 36.364 0.00 0.00 33.74 3.06
897 942 4.751767 ATTCAACCAAAAGCAAAGGTCA 57.248 36.364 0.00 0.00 33.74 4.02
898 943 6.983890 TCTTTATTCAACCAAAAGCAAAGGTC 59.016 34.615 0.00 0.00 33.74 3.85
899 944 6.883744 TCTTTATTCAACCAAAAGCAAAGGT 58.116 32.000 0.00 0.00 37.20 3.50
900 945 7.095102 CCATCTTTATTCAACCAAAAGCAAAGG 60.095 37.037 0.00 0.00 31.68 3.11
901 946 7.442062 ACCATCTTTATTCAACCAAAAGCAAAG 59.558 33.333 0.00 0.00 31.68 2.77
902 947 7.226325 CACCATCTTTATTCAACCAAAAGCAAA 59.774 33.333 0.00 0.00 31.68 3.68
903 948 6.705381 CACCATCTTTATTCAACCAAAAGCAA 59.295 34.615 0.00 0.00 31.68 3.91
904 949 6.041409 TCACCATCTTTATTCAACCAAAAGCA 59.959 34.615 0.00 0.00 31.68 3.91
905 950 6.454795 TCACCATCTTTATTCAACCAAAAGC 58.545 36.000 0.00 0.00 31.68 3.51
906 951 7.661040 ACTCACCATCTTTATTCAACCAAAAG 58.339 34.615 0.00 0.00 0.00 2.27
907 952 7.595819 ACTCACCATCTTTATTCAACCAAAA 57.404 32.000 0.00 0.00 0.00 2.44
908 953 7.595819 AACTCACCATCTTTATTCAACCAAA 57.404 32.000 0.00 0.00 0.00 3.28
909 954 7.505585 AGAAACTCACCATCTTTATTCAACCAA 59.494 33.333 0.00 0.00 0.00 3.67
910 955 7.004086 AGAAACTCACCATCTTTATTCAACCA 58.996 34.615 0.00 0.00 0.00 3.67
911 956 7.454260 AGAAACTCACCATCTTTATTCAACC 57.546 36.000 0.00 0.00 0.00 3.77
943 988 7.678690 GCAGTGTACAGTTACATGTGAGTTTTT 60.679 37.037 9.11 0.00 40.40 1.94
944 989 6.238374 GCAGTGTACAGTTACATGTGAGTTTT 60.238 38.462 9.11 0.00 40.40 2.43
945 990 5.236478 GCAGTGTACAGTTACATGTGAGTTT 59.764 40.000 9.11 0.00 40.40 2.66
946 991 4.750098 GCAGTGTACAGTTACATGTGAGTT 59.250 41.667 9.11 0.00 40.40 3.01
947 992 4.039245 AGCAGTGTACAGTTACATGTGAGT 59.961 41.667 9.11 0.00 40.40 3.41
948 993 4.560128 AGCAGTGTACAGTTACATGTGAG 58.440 43.478 9.11 0.00 40.40 3.51
949 994 4.600692 AGCAGTGTACAGTTACATGTGA 57.399 40.909 9.11 0.00 40.40 3.58
950 995 5.334105 GGAAAGCAGTGTACAGTTACATGTG 60.334 44.000 9.11 0.00 40.40 3.21
951 996 4.755123 GGAAAGCAGTGTACAGTTACATGT 59.245 41.667 2.69 2.69 40.40 3.21
952 997 4.154195 GGGAAAGCAGTGTACAGTTACATG 59.846 45.833 0.00 0.00 40.40 3.21
953 998 4.041691 AGGGAAAGCAGTGTACAGTTACAT 59.958 41.667 0.00 0.00 40.40 2.29
954 999 3.389983 AGGGAAAGCAGTGTACAGTTACA 59.610 43.478 0.00 0.00 35.75 2.41
955 1000 3.995048 GAGGGAAAGCAGTGTACAGTTAC 59.005 47.826 0.00 0.00 0.00 2.50
956 1001 3.644265 TGAGGGAAAGCAGTGTACAGTTA 59.356 43.478 0.00 0.00 0.00 2.24
957 1002 2.438021 TGAGGGAAAGCAGTGTACAGTT 59.562 45.455 0.00 0.00 0.00 3.16
958 1003 2.047061 TGAGGGAAAGCAGTGTACAGT 58.953 47.619 0.00 0.00 0.00 3.55
959 1004 2.839486 TGAGGGAAAGCAGTGTACAG 57.161 50.000 0.00 0.00 0.00 2.74
960 1005 2.637382 TGATGAGGGAAAGCAGTGTACA 59.363 45.455 0.00 0.00 0.00 2.90
961 1006 3.055819 TCTGATGAGGGAAAGCAGTGTAC 60.056 47.826 0.00 0.00 0.00 2.90
962 1007 3.055819 GTCTGATGAGGGAAAGCAGTGTA 60.056 47.826 0.00 0.00 0.00 2.90
963 1008 1.980765 TCTGATGAGGGAAAGCAGTGT 59.019 47.619 0.00 0.00 0.00 3.55
964 1009 2.354259 GTCTGATGAGGGAAAGCAGTG 58.646 52.381 0.00 0.00 0.00 3.66
965 1010 1.280421 GGTCTGATGAGGGAAAGCAGT 59.720 52.381 0.00 0.00 0.00 4.40
966 1011 1.407989 GGGTCTGATGAGGGAAAGCAG 60.408 57.143 0.00 0.00 0.00 4.24
967 1012 0.620556 GGGTCTGATGAGGGAAAGCA 59.379 55.000 0.00 0.00 0.00 3.91
968 1013 0.106967 GGGGTCTGATGAGGGAAAGC 60.107 60.000 0.00 0.00 0.00 3.51
969 1014 0.548510 GGGGGTCTGATGAGGGAAAG 59.451 60.000 0.00 0.00 0.00 2.62
970 1015 2.709992 GGGGGTCTGATGAGGGAAA 58.290 57.895 0.00 0.00 0.00 3.13
971 1016 4.500125 GGGGGTCTGATGAGGGAA 57.500 61.111 0.00 0.00 0.00 3.97
996 1041 4.390909 GCCGTAGTAGCAGTGTACATTTTT 59.609 41.667 0.00 0.00 0.00 1.94
997 1042 3.930848 GCCGTAGTAGCAGTGTACATTTT 59.069 43.478 0.00 0.00 0.00 1.82
998 1043 3.518590 GCCGTAGTAGCAGTGTACATTT 58.481 45.455 0.00 0.00 0.00 2.32
999 1044 2.479049 CGCCGTAGTAGCAGTGTACATT 60.479 50.000 0.00 0.00 0.00 2.71
1000 1045 1.065102 CGCCGTAGTAGCAGTGTACAT 59.935 52.381 0.00 0.00 0.00 2.29
1125 1170 0.761802 GTTGGCTAGGGCTAGATGCT 59.238 55.000 0.00 0.00 42.39 3.79
1127 1172 3.196685 GGATAGTTGGCTAGGGCTAGATG 59.803 52.174 0.00 0.00 38.73 2.90
1128 1173 3.078305 AGGATAGTTGGCTAGGGCTAGAT 59.922 47.826 0.00 0.00 38.73 1.98
1129 1174 2.451273 AGGATAGTTGGCTAGGGCTAGA 59.549 50.000 0.00 0.00 38.73 2.43
1130 1175 2.829120 GAGGATAGTTGGCTAGGGCTAG 59.171 54.545 0.00 0.00 38.73 3.42
1131 1176 2.492940 GGAGGATAGTTGGCTAGGGCTA 60.493 54.545 0.00 0.00 38.73 3.93
1132 1177 1.723288 GAGGATAGTTGGCTAGGGCT 58.277 55.000 0.00 0.00 38.73 5.19
1147 1192 2.249125 TGCAGGAGGAGGAGGAGGA 61.249 63.158 0.00 0.00 0.00 3.71
1148 1193 2.063378 GTGCAGGAGGAGGAGGAGG 61.063 68.421 0.00 0.00 0.00 4.30
1149 1194 2.063378 GGTGCAGGAGGAGGAGGAG 61.063 68.421 0.00 0.00 0.00 3.69
1247 1292 1.030488 CAAGTCGTCCTCCTCGGCTA 61.030 60.000 0.00 0.00 42.42 3.93
1465 1510 2.914908 CGAAACCCTTGCCCCAACG 61.915 63.158 0.00 0.00 0.00 4.10
1469 1514 3.680786 GCACGAAACCCTTGCCCC 61.681 66.667 0.00 0.00 34.32 5.80
1486 1531 4.804139 ACTTAAATCTGTACCGAATCGCTG 59.196 41.667 0.00 0.00 0.00 5.18
1514 1559 2.205074 GTAGCACTGCGTTGCATAGAT 58.795 47.619 11.56 0.00 45.62 1.98
1531 1576 5.926542 TCACCAAAGAAGAAACAGATCGTAG 59.073 40.000 0.00 0.00 0.00 3.51
1544 1589 4.687483 GGCAACATTTCATCACCAAAGAAG 59.313 41.667 0.00 0.00 0.00 2.85
1546 1591 3.305267 CGGCAACATTTCATCACCAAAGA 60.305 43.478 0.00 0.00 0.00 2.52
1593 1648 8.527810 CCATACAGAAAAATTGGCTACCTAAAA 58.472 33.333 0.00 0.00 0.00 1.52
1682 1738 4.499696 CGACATGGAATTTGGAAATAGGCC 60.500 45.833 0.00 0.00 0.00 5.19
1820 1926 2.678471 ATAAGCTGGCCAAATTGCAC 57.322 45.000 16.24 0.00 0.00 4.57
1825 1931 8.743714 GCTATATTTCTTATAAGCTGGCCAAAT 58.256 33.333 7.01 9.49 0.00 2.32
1831 1937 9.678260 AGATTGGCTATATTTCTTATAAGCTGG 57.322 33.333 7.67 0.00 0.00 4.85
1881 1987 6.670695 TGCTACTCCTAGAATGATGCATAA 57.329 37.500 0.00 0.00 0.00 1.90
1912 2109 6.899393 ATTGCAAACCAAGATCACTAAAGA 57.101 33.333 1.71 0.00 36.76 2.52
1927 2124 4.142773 CCATTCCAATCAGCAATTGCAAAC 60.143 41.667 30.89 2.81 42.96 2.93
1933 2130 2.433239 GCCTCCATTCCAATCAGCAATT 59.567 45.455 0.00 0.00 0.00 2.32
1948 2145 4.716784 ACTACATGAGTTTCTATGCCTCCA 59.283 41.667 0.00 0.00 33.13 3.86
1953 2150 7.922505 CTCAGTACTACATGAGTTTCTATGC 57.077 40.000 0.00 0.00 39.81 3.14
1972 2169 1.935799 ACAGCTCCTCATGACTCAGT 58.064 50.000 0.00 0.00 0.00 3.41
2056 2284 3.550233 GCAATAAGATGGCAGAGCATGTG 60.550 47.826 0.00 0.00 0.00 3.21
2122 2350 8.682710 AGTTTGCAAACAAGTAAGATAAAGTGA 58.317 29.630 36.46 0.00 41.30 3.41
2134 2362 3.836949 CACACTGAGTTTGCAAACAAGT 58.163 40.909 36.46 32.93 41.30 3.16
2135 2363 2.599973 GCACACTGAGTTTGCAAACAAG 59.400 45.455 36.46 32.39 38.84 3.16
2138 2366 1.559831 GGCACACTGAGTTTGCAAAC 58.440 50.000 30.63 30.63 40.49 2.93
2139 2367 0.100325 CGGCACACTGAGTTTGCAAA 59.900 50.000 23.24 8.05 40.49 3.68
2140 2368 0.746204 TCGGCACACTGAGTTTGCAA 60.746 50.000 23.24 9.57 40.49 4.08
2141 2369 0.746204 TTCGGCACACTGAGTTTGCA 60.746 50.000 23.24 2.99 40.49 4.08
2142 2370 0.593128 ATTCGGCACACTGAGTTTGC 59.407 50.000 14.93 14.93 38.35 3.68
2262 2490 7.923414 AGACCCACTACTTAATGAAATCAAC 57.077 36.000 0.00 0.00 0.00 3.18
2296 2524 3.485463 TTCATGGACGGACAAACTCTT 57.515 42.857 0.00 0.00 0.00 2.85
2300 2528 2.095718 GCTCTTTCATGGACGGACAAAC 60.096 50.000 0.00 0.00 0.00 2.93
2301 2529 2.151202 GCTCTTTCATGGACGGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
2302 2530 1.347707 AGCTCTTTCATGGACGGACAA 59.652 47.619 0.00 0.00 0.00 3.18
2360 2592 9.515020 CAGAGAGAGAATGAACTGTTTAGATAC 57.485 37.037 0.00 0.00 0.00 2.24
2365 2597 5.482908 GGCAGAGAGAGAATGAACTGTTTA 58.517 41.667 0.00 0.00 0.00 2.01
2373 2605 2.172082 CAATGGGGCAGAGAGAGAATGA 59.828 50.000 0.00 0.00 0.00 2.57
2374 2606 2.573369 CAATGGGGCAGAGAGAGAATG 58.427 52.381 0.00 0.00 0.00 2.67
2375 2607 1.133853 GCAATGGGGCAGAGAGAGAAT 60.134 52.381 0.00 0.00 0.00 2.40
2397 2629 6.649155 TGTAGGTATCAGAATAAGCAAGCAA 58.351 36.000 0.00 0.00 0.00 3.91
2398 2630 6.233905 TGTAGGTATCAGAATAAGCAAGCA 57.766 37.500 0.00 0.00 0.00 3.91
2399 2631 7.553881 TTTGTAGGTATCAGAATAAGCAAGC 57.446 36.000 0.00 0.00 0.00 4.01
2432 2664 6.801862 CCAGTGTAAAATTGTTCGATCCTTTC 59.198 38.462 0.00 0.00 0.00 2.62
2435 2667 4.156008 GCCAGTGTAAAATTGTTCGATCCT 59.844 41.667 0.00 0.00 0.00 3.24
2436 2668 4.156008 AGCCAGTGTAAAATTGTTCGATCC 59.844 41.667 0.00 0.00 0.00 3.36
2438 2670 4.615912 GCAGCCAGTGTAAAATTGTTCGAT 60.616 41.667 0.00 0.00 0.00 3.59
2439 2671 3.304391 GCAGCCAGTGTAAAATTGTTCGA 60.304 43.478 0.00 0.00 0.00 3.71
2440 2672 2.979813 GCAGCCAGTGTAAAATTGTTCG 59.020 45.455 0.00 0.00 0.00 3.95
2441 2673 4.243007 AGCAGCCAGTGTAAAATTGTTC 57.757 40.909 0.00 0.00 0.00 3.18
2453 2686 3.728385 AGGAGAAATAAAGCAGCCAGT 57.272 42.857 0.00 0.00 0.00 4.00
2463 2696 8.421002 CCCTTGTTTTTCTTGAAGGAGAAATAA 58.579 33.333 0.00 0.00 43.15 1.40
2472 2705 6.313658 CCTTTGTTCCCTTGTTTTTCTTGAAG 59.686 38.462 0.00 0.00 0.00 3.02
2487 2720 2.041115 GCTCTCGCCCTTTGTTCCC 61.041 63.158 0.00 0.00 0.00 3.97
2488 2721 0.678048 ATGCTCTCGCCCTTTGTTCC 60.678 55.000 0.00 0.00 34.43 3.62
2492 2725 2.029838 ACTAATGCTCTCGCCCTTTG 57.970 50.000 0.00 0.00 34.43 2.77
2877 3111 5.030147 AGGTTGTATGTGAATAGGTCTGGA 58.970 41.667 0.00 0.00 0.00 3.86
2955 3189 5.343307 TCGGATCTTTTGACATCTCATCA 57.657 39.130 0.00 0.00 0.00 3.07
3015 3249 2.918549 GCTGGCATCGACGTAGATACTG 60.919 54.545 10.99 11.52 0.00 2.74
3072 3306 2.103941 CCTCTGGCTAATCTTCACCTCC 59.896 54.545 0.00 0.00 0.00 4.30
3077 3311 2.768527 CACTCCCTCTGGCTAATCTTCA 59.231 50.000 0.00 0.00 0.00 3.02
3129 3363 3.637273 AGGTTGCCCAGACCGGTC 61.637 66.667 27.67 27.67 42.11 4.79
3130 3364 3.953775 CAGGTTGCCCAGACCGGT 61.954 66.667 6.92 6.92 42.11 5.28
3250 3484 2.125147 CTCCGCGGCATCCTTCAA 60.125 61.111 23.51 0.00 0.00 2.69
3350 3584 1.300931 GCAGTGTCAGTGAAGCCGA 60.301 57.895 12.04 0.00 0.00 5.54
3360 3594 2.758423 TCTAAAGCTATCCGCAGTGTCA 59.242 45.455 0.00 0.00 42.61 3.58
3366 3600 2.802787 GCTCTCTAAAGCTATCCGCA 57.197 50.000 0.00 0.00 42.61 5.69
3416 3650 4.569180 AGCACGCACTTGCCCTGT 62.569 61.111 0.00 0.00 44.14 4.00
3426 3660 4.687215 GCCACTCAGGAGCACGCA 62.687 66.667 0.00 0.00 41.22 5.24
3481 3716 6.708285 AGTCCATTATTCTCGTACCAAAACT 58.292 36.000 0.00 0.00 0.00 2.66
3583 3826 6.281405 AGTTACGCTGGACCTGAAAATATAG 58.719 40.000 1.91 0.00 0.00 1.31
3675 3919 1.167851 CAAATGTGACATGGCTCGGT 58.832 50.000 0.00 0.00 0.00 4.69
3795 4176 1.204312 GCACGTTCGTTCCTTGCTC 59.796 57.895 0.00 0.00 0.00 4.26
3836 4222 4.803098 ACTTCAGATTTAGCCGTACAGT 57.197 40.909 0.00 0.00 0.00 3.55
3837 4223 4.330074 CCAACTTCAGATTTAGCCGTACAG 59.670 45.833 0.00 0.00 0.00 2.74
3838 4224 4.250464 CCAACTTCAGATTTAGCCGTACA 58.750 43.478 0.00 0.00 0.00 2.90
3839 4225 4.251268 ACCAACTTCAGATTTAGCCGTAC 58.749 43.478 0.00 0.00 0.00 3.67
3840 4226 4.546829 ACCAACTTCAGATTTAGCCGTA 57.453 40.909 0.00 0.00 0.00 4.02
3934 4321 2.106332 GTGATGTCGCCTACCCCG 59.894 66.667 0.00 0.00 0.00 5.73
3990 4381 4.760047 ACACCTGGCCGACGATGC 62.760 66.667 0.00 0.00 0.00 3.91
3993 4384 4.980805 GCAACACCTGGCCGACGA 62.981 66.667 0.00 0.00 0.00 4.20
3997 4388 4.424566 GCATGCAACACCTGGCCG 62.425 66.667 14.21 0.00 0.00 6.13
4039 4587 2.675844 TCGCGACTGGTTTTTCATATGG 59.324 45.455 3.71 0.00 0.00 2.74
4046 4594 3.587797 TCTAGATCGCGACTGGTTTTT 57.412 42.857 12.93 0.00 0.00 1.94
4361 4926 0.177141 CCGAGGGAAATTCGCACCTA 59.823 55.000 12.54 0.00 36.76 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.