Multiple sequence alignment - TraesCS2D01G315200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G315200 chr2D 100.000 6924 0 0 1 6924 404800126 404793203 0.000000e+00 12787.0
1 TraesCS2D01G315200 chr2D 85.239 691 93 7 1 685 605182668 605181981 0.000000e+00 702.0
2 TraesCS2D01G315200 chr2D 90.659 182 13 1 4304 4485 96826012 96825835 8.980000e-59 239.0
3 TraesCS2D01G315200 chr2D 94.059 101 4 2 4194 4294 361405873 361405775 1.200000e-32 152.0
4 TraesCS2D01G315200 chr2D 91.429 70 4 2 4607 4675 404795452 404795520 2.060000e-15 95.3
5 TraesCS2D01G315200 chr2B 87.412 2280 188 56 4707 6924 478470777 478473019 0.000000e+00 2529.0
6 TraesCS2D01G315200 chr2B 89.229 1764 101 38 712 2415 478466872 478468606 0.000000e+00 2122.0
7 TraesCS2D01G315200 chr2B 89.573 1640 93 31 2557 4145 478468774 478470386 0.000000e+00 2010.0
8 TraesCS2D01G315200 chr2B 90.860 186 13 2 4304 4488 49523792 49523610 5.360000e-61 246.0
9 TraesCS2D01G315200 chr2A 91.617 1694 94 20 2557 4211 542689986 542688302 0.000000e+00 2298.0
10 TraesCS2D01G315200 chr2A 86.258 1972 141 52 1 1943 542692617 542690747 0.000000e+00 2021.0
11 TraesCS2D01G315200 chr2A 85.746 1789 154 52 4702 6432 542687820 542686075 0.000000e+00 1797.0
12 TraesCS2D01G315200 chr2A 93.409 531 28 2 1959 2483 542690703 542690174 0.000000e+00 780.0
13 TraesCS2D01G315200 chr2A 88.525 122 10 4 4193 4314 41474150 41474267 2.010000e-30 145.0
14 TraesCS2D01G315200 chr2A 96.875 32 0 1 6443 6474 3440164 3440194 1.300000e-02 52.8
15 TraesCS2D01G315200 chr7B 86.252 691 87 7 1 685 244274635 244275323 0.000000e+00 743.0
16 TraesCS2D01G315200 chr7B 100.000 31 0 0 6406 6436 723907207 723907237 2.700000e-04 58.4
17 TraesCS2D01G315200 chr7D 85.838 692 90 7 1 685 631591644 631592334 0.000000e+00 728.0
18 TraesCS2D01G315200 chr7D 90.374 187 13 4 4304 4486 392622307 392622492 2.500000e-59 241.0
19 TraesCS2D01G315200 chr5B 85.838 692 90 6 1 685 694231272 694231962 0.000000e+00 728.0
20 TraesCS2D01G315200 chr5B 85.384 691 94 6 1 685 644506055 644506744 0.000000e+00 710.0
21 TraesCS2D01G315200 chr5B 93.137 102 7 0 4192 4293 331307506 331307405 4.330000e-32 150.0
22 TraesCS2D01G315200 chr5B 89.474 76 2 5 4598 4671 583738316 583738387 2.660000e-14 91.6
23 TraesCS2D01G315200 chr3D 85.797 690 92 5 1 685 277226311 277225623 0.000000e+00 726.0
24 TraesCS2D01G315200 chr3D 85.818 691 91 5 1 685 459079337 459080026 0.000000e+00 726.0
25 TraesCS2D01G315200 chr3D 78.000 150 26 7 6364 6512 12247542 12247685 3.440000e-13 87.9
26 TraesCS2D01G315200 chr1D 85.384 691 96 4 1 688 111512532 111513220 0.000000e+00 712.0
27 TraesCS2D01G315200 chr1D 93.548 62 2 1 4612 4671 484117780 484117719 2.660000e-14 91.6
28 TraesCS2D01G315200 chr6B 85.303 694 92 8 1 685 452173440 452172748 0.000000e+00 708.0
29 TraesCS2D01G315200 chr6B 93.443 183 9 1 4304 4486 625790687 625790866 1.140000e-67 268.0
30 TraesCS2D01G315200 chr6B 97.849 93 2 0 4202 4294 546656567 546656659 2.000000e-35 161.0
31 TraesCS2D01G315200 chr6B 93.939 66 3 1 4608 4672 563321462 563321527 1.590000e-16 99.0
32 TraesCS2D01G315200 chr6A 96.133 181 6 1 4304 4484 605282568 605282389 1.890000e-75 294.0
33 TraesCS2D01G315200 chr4D 93.407 182 9 1 4304 4485 450489756 450489934 4.120000e-67 267.0
34 TraesCS2D01G315200 chr4D 91.743 109 9 0 4202 4310 47533274 47533166 1.200000e-32 152.0
35 TraesCS2D01G315200 chr4D 77.160 162 30 7 6443 6603 55235318 55235473 3.440000e-13 87.9
36 TraesCS2D01G315200 chr4A 92.350 183 10 4 4304 4486 726876374 726876552 2.480000e-64 257.0
37 TraesCS2D01G315200 chr4A 91.209 182 12 3 4304 4485 518981344 518981167 1.930000e-60 244.0
38 TraesCS2D01G315200 chr4A 90.826 109 8 2 4204 4312 179963033 179963139 2.010000e-30 145.0
39 TraesCS2D01G315200 chr4A 88.000 75 3 2 4611 4679 562283937 562283863 4.450000e-12 84.2
40 TraesCS2D01G315200 chr3A 89.730 185 16 2 4304 4487 196416972 196417154 4.180000e-57 233.0
41 TraesCS2D01G315200 chr7A 95.000 100 4 1 4203 4302 80994076 80994174 9.300000e-34 156.0
42 TraesCS2D01G315200 chr7A 95.455 66 0 2 4608 4671 98789225 98789289 1.230000e-17 102.0
43 TraesCS2D01G315200 chr5A 94.898 98 5 0 4198 4295 479846113 479846210 3.340000e-33 154.0
44 TraesCS2D01G315200 chr5A 85.366 82 5 6 4594 4672 558168934 558168857 2.070000e-10 78.7
45 TraesCS2D01G315200 chr5A 94.444 36 2 0 6405 6440 667119934 667119969 1.000000e-03 56.5
46 TraesCS2D01G315200 chr3B 95.745 94 3 1 4202 4294 693084001 693084094 4.330000e-32 150.0
47 TraesCS2D01G315200 chr3B 76.296 135 22 10 6447 6577 292024815 292024687 5.800000e-06 63.9
48 TraesCS2D01G315200 chr3B 100.000 32 0 0 6408 6439 766889981 766890012 7.500000e-05 60.2
49 TraesCS2D01G315200 chr1B 95.000 60 1 1 4612 4671 668960745 668960688 7.390000e-15 93.5
50 TraesCS2D01G315200 chr5D 93.548 62 2 2 4612 4671 476275193 476275254 2.660000e-14 91.6
51 TraesCS2D01G315200 chr5D 90.698 43 3 1 6449 6491 417390088 417390047 1.000000e-03 56.5
52 TraesCS2D01G315200 chr1A 84.932 73 10 1 6471 6542 339154653 339154725 9.630000e-09 73.1
53 TraesCS2D01G315200 chr1A 80.488 82 11 4 6449 6528 9885866 9885944 2.700000e-04 58.4
54 TraesCS2D01G315200 chr1A 80.488 82 11 4 6449 6528 9894351 9894429 2.700000e-04 58.4
55 TraesCS2D01G315200 chr6D 81.818 77 11 3 6406 6481 389371826 389371900 2.090000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G315200 chr2D 404793203 404800126 6923 True 12787.000000 12787 100.0000 1 6924 1 chr2D.!!$R3 6923
1 TraesCS2D01G315200 chr2D 605181981 605182668 687 True 702.000000 702 85.2390 1 685 1 chr2D.!!$R4 684
2 TraesCS2D01G315200 chr2B 478466872 478473019 6147 False 2220.333333 2529 88.7380 712 6924 3 chr2B.!!$F1 6212
3 TraesCS2D01G315200 chr2A 542686075 542692617 6542 True 1724.000000 2298 89.2575 1 6432 4 chr2A.!!$R1 6431
4 TraesCS2D01G315200 chr7B 244274635 244275323 688 False 743.000000 743 86.2520 1 685 1 chr7B.!!$F1 684
5 TraesCS2D01G315200 chr7D 631591644 631592334 690 False 728.000000 728 85.8380 1 685 1 chr7D.!!$F2 684
6 TraesCS2D01G315200 chr5B 694231272 694231962 690 False 728.000000 728 85.8380 1 685 1 chr5B.!!$F3 684
7 TraesCS2D01G315200 chr5B 644506055 644506744 689 False 710.000000 710 85.3840 1 685 1 chr5B.!!$F2 684
8 TraesCS2D01G315200 chr3D 277225623 277226311 688 True 726.000000 726 85.7970 1 685 1 chr3D.!!$R1 684
9 TraesCS2D01G315200 chr3D 459079337 459080026 689 False 726.000000 726 85.8180 1 685 1 chr3D.!!$F2 684
10 TraesCS2D01G315200 chr1D 111512532 111513220 688 False 712.000000 712 85.3840 1 688 1 chr1D.!!$F1 687
11 TraesCS2D01G315200 chr6B 452172748 452173440 692 True 708.000000 708 85.3030 1 685 1 chr6B.!!$R1 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 977 0.672711 GTCCCGGCAGTTAACACCTC 60.673 60.0 8.61 0.00 0.00 3.85 F
2552 2734 0.033920 TGTGATCTTGTGCGACAGCT 59.966 50.0 0.00 0.00 45.42 4.24 F
4376 4671 0.317770 TTTTCTTTGCTCCGCTTGCG 60.318 50.0 8.14 8.14 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2710 2931 0.031994 GGTGATTTTTGGCGTGCACT 59.968 50.0 16.19 0.0 0.00 4.40 R
4437 4732 0.179062 GGCCTCTGCATCTGAACGAT 60.179 55.0 0.00 0.0 40.13 3.73 R
6101 6736 0.474184 ATACAGGCCTTGATTCCCCG 59.526 55.0 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 107 4.376146 TCATGACGAGACAATCAAACACA 58.624 39.130 0.00 0.00 0.00 3.72
163 167 5.504665 CCAGTCATCCAAATAGCGTCAAATC 60.505 44.000 0.00 0.00 0.00 2.17
218 223 3.318557 GGTTTTTGGTTGGACGGTATTCA 59.681 43.478 0.00 0.00 0.00 2.57
224 229 7.469537 TTTGGTTGGACGGTATTCAAAATAT 57.530 32.000 0.00 0.00 0.00 1.28
267 274 4.590918 TGGGAACGTATGCCTTAATTTGA 58.409 39.130 9.05 0.00 40.93 2.69
461 476 2.005960 TTTTTCCAACACGGGTGGCG 62.006 55.000 0.00 0.00 34.36 5.69
467 482 3.969250 AACACGGGTGGCGGCATAG 62.969 63.158 17.19 12.25 34.19 2.23
507 522 4.130118 CACCTCCTTTGACATAGGCATAC 58.870 47.826 7.05 0.00 32.59 2.39
513 528 4.441495 CCTTTGACATAGGCATACTGTCGA 60.441 45.833 12.80 9.88 41.69 4.20
523 538 3.449018 GGCATACTGTCGATCTATGGGAT 59.551 47.826 0.00 0.00 37.37 3.85
703 722 5.391312 AAAATATCAATAGGATTGCCCGC 57.609 39.130 0.00 0.00 40.87 6.13
704 723 3.719268 ATATCAATAGGATTGCCCGCA 57.281 42.857 0.00 0.00 40.87 5.69
705 724 2.363306 ATCAATAGGATTGCCCGCAA 57.637 45.000 4.31 4.31 40.87 4.85
706 725 2.136298 TCAATAGGATTGCCCGCAAA 57.864 45.000 6.16 0.00 39.55 3.68
707 726 2.451490 TCAATAGGATTGCCCGCAAAA 58.549 42.857 6.16 0.00 39.55 2.44
708 727 2.828520 TCAATAGGATTGCCCGCAAAAA 59.171 40.909 6.16 0.00 39.55 1.94
816 835 1.301087 CACGGCCACGGTCACTAAA 60.301 57.895 2.24 0.00 46.48 1.85
817 836 1.301165 ACGGCCACGGTCACTAAAC 60.301 57.895 2.24 0.00 46.48 2.01
822 841 1.270147 GCCACGGTCACTAAACTGTCT 60.270 52.381 0.00 0.00 36.61 3.41
832 851 2.963782 ACTAAACTGTCTCCTTGACCGT 59.036 45.455 0.00 0.00 44.75 4.83
874 893 3.629719 CTAACGCCGTTAGCAACTTAC 57.370 47.619 22.48 0.00 44.04 2.34
875 894 2.159327 AACGCCGTTAGCAACTTACT 57.841 45.000 0.00 0.00 44.04 2.24
876 895 3.302365 AACGCCGTTAGCAACTTACTA 57.698 42.857 0.00 0.00 44.04 1.82
877 896 2.599659 ACGCCGTTAGCAACTTACTAC 58.400 47.619 0.00 0.00 44.04 2.73
878 897 1.580704 CGCCGTTAGCAACTTACTACG 59.419 52.381 0.00 0.00 44.04 3.51
950 973 2.344500 CCGTCCCGGCAGTTAACA 59.656 61.111 8.61 0.00 41.17 2.41
954 977 0.672711 GTCCCGGCAGTTAACACCTC 60.673 60.000 8.61 0.00 0.00 3.85
1005 1028 1.063654 AACCCCCGAAACTTCTCCCA 61.064 55.000 0.00 0.00 0.00 4.37
1017 1040 0.252742 TTCTCCCAGTTCCCCTCTCC 60.253 60.000 0.00 0.00 0.00 3.71
1019 1042 2.184631 TCCCAGTTCCCCTCTCCCT 61.185 63.158 0.00 0.00 0.00 4.20
1023 1046 0.689412 CAGTTCCCCTCTCCCTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
1035 1060 1.751162 CCTCTCCCTCTCGCGTCTT 60.751 63.158 5.77 0.00 0.00 3.01
1036 1061 1.720694 CCTCTCCCTCTCGCGTCTTC 61.721 65.000 5.77 0.00 0.00 2.87
1037 1062 0.746563 CTCTCCCTCTCGCGTCTTCT 60.747 60.000 5.77 0.00 0.00 2.85
1038 1063 0.322636 TCTCCCTCTCGCGTCTTCTT 60.323 55.000 5.77 0.00 0.00 2.52
1062 1087 1.710013 TCTCCTCGCAACATTTCGTC 58.290 50.000 0.00 0.00 0.00 4.20
1080 1105 2.805353 CGACTCAACTCACGGGCG 60.805 66.667 0.00 0.00 0.00 6.13
1189 1231 2.288666 TCTCACGCAAGCTGAGTTTTT 58.711 42.857 15.84 0.00 42.33 1.94
1293 1335 1.376037 CCTTTGTGCTCTCCGTCCC 60.376 63.158 0.00 0.00 0.00 4.46
1331 1373 2.228343 GCTGCAGCTGTTCTTGATTCTT 59.772 45.455 31.33 0.00 38.21 2.52
1339 1381 0.695924 TTCTTGATTCTTGCGGGGGA 59.304 50.000 0.00 0.00 0.00 4.81
1541 1583 1.383456 GGCGGCATCAAAGGCATGTA 61.383 55.000 3.07 0.00 0.00 2.29
1545 1587 2.031420 CGGCATCAAAGGCATGTATCTG 60.031 50.000 0.00 0.00 0.00 2.90
1546 1588 2.288030 GGCATCAAAGGCATGTATCTGC 60.288 50.000 0.00 0.00 41.53 4.26
1548 1590 3.067742 GCATCAAAGGCATGTATCTGCTT 59.932 43.478 0.00 0.00 41.95 3.91
1549 1591 4.792057 GCATCAAAGGCATGTATCTGCTTC 60.792 45.833 0.00 0.00 41.95 3.86
1552 1594 2.926778 AGGCATGTATCTGCTTCCTC 57.073 50.000 0.00 0.00 41.95 3.71
1553 1595 1.069823 AGGCATGTATCTGCTTCCTCG 59.930 52.381 0.00 0.00 41.95 4.63
1555 1597 1.135046 CATGTATCTGCTTCCTCGCG 58.865 55.000 0.00 0.00 0.00 5.87
1558 1600 0.382515 GTATCTGCTTCCTCGCGTCT 59.617 55.000 5.77 0.00 0.00 4.18
1560 1602 0.247736 ATCTGCTTCCTCGCGTCTTT 59.752 50.000 5.77 0.00 0.00 2.52
1561 1603 0.667487 TCTGCTTCCTCGCGTCTTTG 60.667 55.000 5.77 0.00 0.00 2.77
1562 1604 2.233007 CTGCTTCCTCGCGTCTTTGC 62.233 60.000 5.77 7.59 0.00 3.68
1563 1605 2.029844 GCTTCCTCGCGTCTTTGCT 61.030 57.895 5.77 0.00 0.00 3.91
1567 1609 1.441016 CCTCGCGTCTTTGCTTTGC 60.441 57.895 5.77 0.00 0.00 3.68
1568 1610 1.441016 CTCGCGTCTTTGCTTTGCC 60.441 57.895 5.77 0.00 0.00 4.52
1569 1611 2.116736 CTCGCGTCTTTGCTTTGCCA 62.117 55.000 5.77 0.00 0.00 4.92
1570 1612 1.081242 CGCGTCTTTGCTTTGCCAT 60.081 52.632 0.00 0.00 0.00 4.40
1571 1613 1.339235 CGCGTCTTTGCTTTGCCATG 61.339 55.000 0.00 0.00 0.00 3.66
1574 1616 0.037046 GTCTTTGCTTTGCCATGGGG 60.037 55.000 15.13 0.00 37.18 4.96
1576 1618 0.037046 CTTTGCTTTGCCATGGGGTC 60.037 55.000 15.13 0.00 36.17 4.46
1579 1621 2.755469 CTTTGCCATGGGGTCCCG 60.755 66.667 15.13 0.00 39.42 5.14
1581 1623 3.577334 TTTGCCATGGGGTCCCGTC 62.577 63.158 15.13 0.00 39.42 4.79
1613 1655 1.468520 CCGGTGTGGCTTATTGTTCTG 59.531 52.381 0.00 0.00 0.00 3.02
1617 1659 3.077359 GTGTGGCTTATTGTTCTGCTCT 58.923 45.455 0.00 0.00 0.00 4.09
1626 1668 3.576078 TTGTTCTGCTCTTTCTTGGGA 57.424 42.857 0.00 0.00 0.00 4.37
1689 1731 1.871080 CTGATGATACTGGGGAACGC 58.129 55.000 0.00 0.00 43.69 4.84
1763 1805 3.950395 GCTCATCAAGTAAGCCCATTCTT 59.050 43.478 0.00 0.00 0.00 2.52
1767 1809 6.248433 TCATCAAGTAAGCCCATTCTTCTTT 58.752 36.000 0.00 0.00 0.00 2.52
1768 1810 6.375455 TCATCAAGTAAGCCCATTCTTCTTTC 59.625 38.462 0.00 0.00 0.00 2.62
1769 1811 4.695455 TCAAGTAAGCCCATTCTTCTTTCG 59.305 41.667 0.00 0.00 0.00 3.46
1771 1813 4.652822 AGTAAGCCCATTCTTCTTTCGTT 58.347 39.130 0.00 0.00 0.00 3.85
1783 1834 7.790861 TTCTTCTTTCGTTCTTGTGTTTTTC 57.209 32.000 0.00 0.00 0.00 2.29
1788 1839 2.096174 TCGTTCTTGTGTTTTTCCGTGG 59.904 45.455 0.00 0.00 0.00 4.94
1822 1874 2.403259 CATTTTTGTTGGTTCCGAGCC 58.597 47.619 0.00 0.00 0.00 4.70
1835 1887 2.427245 CGAGCCTCCGATCCCTTGT 61.427 63.158 0.00 0.00 0.00 3.16
1880 1941 2.443016 TGCCTTGGCCGTGGTTTT 60.443 55.556 14.28 0.00 0.00 2.43
1888 1949 1.527380 GCCGTGGTTTTGAGGACCA 60.527 57.895 0.00 0.00 44.59 4.02
1905 1966 2.494870 GACCAGATTCTGCTGCCAATTT 59.505 45.455 8.23 0.00 34.56 1.82
1907 1968 3.056322 ACCAGATTCTGCTGCCAATTTTC 60.056 43.478 8.23 0.00 34.56 2.29
1909 1970 3.056393 CAGATTCTGCTGCCAATTTTCCA 60.056 43.478 0.00 0.00 0.00 3.53
1912 1973 4.354893 TTCTGCTGCCAATTTTCCAAAT 57.645 36.364 0.00 0.00 0.00 2.32
1946 2007 1.094785 CAAATGATCCGACCACCACC 58.905 55.000 0.00 0.00 0.00 4.61
1947 2008 0.991920 AAATGATCCGACCACCACCT 59.008 50.000 0.00 0.00 0.00 4.00
1948 2009 0.253044 AATGATCCGACCACCACCTG 59.747 55.000 0.00 0.00 0.00 4.00
1949 2010 0.617535 ATGATCCGACCACCACCTGA 60.618 55.000 0.00 0.00 0.00 3.86
1952 2013 0.325671 ATCCGACCACCACCTGAGAT 60.326 55.000 0.00 0.00 0.00 2.75
1954 2015 0.460311 CCGACCACCACCTGAGATAC 59.540 60.000 0.00 0.00 0.00 2.24
1955 2016 1.475403 CGACCACCACCTGAGATACT 58.525 55.000 0.00 0.00 0.00 2.12
2057 2145 2.281761 CTGTTCGGGCTGTGGCTT 60.282 61.111 0.00 0.00 38.73 4.35
2060 2148 4.659172 TTCGGGCTGTGGCTTGGG 62.659 66.667 0.00 0.00 38.73 4.12
2123 2211 1.874019 CTTCACGCCGTGGATCTCG 60.874 63.158 18.32 0.00 33.87 4.04
2186 2274 1.545582 GTGCATGGCATTGTGGTAAGT 59.454 47.619 0.00 0.00 41.91 2.24
2213 2307 4.430765 ACGACCGGCCGCTGTTAG 62.431 66.667 22.85 13.69 0.00 2.34
2223 2317 1.400242 GCCGCTGTTAGCTGTGAAAAG 60.400 52.381 0.00 0.00 39.60 2.27
2237 2331 5.535753 TGTGAAAAGTGAGTGAGAGATCA 57.464 39.130 0.00 0.00 0.00 2.92
2239 2333 6.528321 TGTGAAAAGTGAGTGAGAGATCAAT 58.472 36.000 0.00 0.00 0.00 2.57
2242 2336 5.752036 AAAGTGAGTGAGAGATCAATGGA 57.248 39.130 0.00 0.00 0.00 3.41
2263 2357 0.170339 GATTTTGGTTTCTCGCCGGG 59.830 55.000 2.18 0.00 0.00 5.73
2264 2358 0.538746 ATTTTGGTTTCTCGCCGGGT 60.539 50.000 2.18 0.00 0.00 5.28
2429 2523 9.042008 GTATTCATTGTTATCGTGTTAGACCAT 57.958 33.333 0.00 0.00 0.00 3.55
2465 2559 5.091261 AGCACTGGATTACCTGTCTAAAG 57.909 43.478 0.00 0.00 44.51 1.85
2477 2571 9.771534 ATTACCTGTCTAAAGCTATTCAAGATC 57.228 33.333 0.00 0.00 0.00 2.75
2483 2577 9.507329 TGTCTAAAGCTATTCAAGATCTTTGTT 57.493 29.630 4.86 0.00 0.00 2.83
2527 2709 4.992688 TGTGTGACAAGGATGTTTTGTTC 58.007 39.130 0.00 0.00 40.74 3.18
2529 2711 3.066064 TGTGACAAGGATGTTTTGTTCCG 59.934 43.478 0.00 0.00 40.74 4.30
2550 2732 1.788258 ACTGTGATCTTGTGCGACAG 58.212 50.000 5.75 5.75 39.96 3.51
2551 2733 0.441533 CTGTGATCTTGTGCGACAGC 59.558 55.000 0.00 0.00 45.41 4.40
2552 2734 0.033920 TGTGATCTTGTGCGACAGCT 59.966 50.000 0.00 0.00 45.42 4.24
2553 2735 0.441533 GTGATCTTGTGCGACAGCTG 59.558 55.000 13.48 13.48 45.42 4.24
2554 2736 0.318120 TGATCTTGTGCGACAGCTGA 59.682 50.000 23.35 0.00 45.42 4.26
2555 2737 0.718343 GATCTTGTGCGACAGCTGAC 59.282 55.000 23.35 14.26 45.42 3.51
2570 2781 2.053627 GCTGACAAGAAAAACATGCCG 58.946 47.619 0.00 0.00 0.00 5.69
2621 2836 7.761409 TGAAGCATAGTAAAGCCTGTAAAATG 58.239 34.615 0.00 0.00 0.00 2.32
2623 2838 7.703058 AGCATAGTAAAGCCTGTAAAATGTT 57.297 32.000 0.00 0.00 0.00 2.71
2633 2848 4.156008 GCCTGTAAAATGTTGGTCGATCTT 59.844 41.667 0.00 0.00 0.00 2.40
2636 2851 4.390603 TGTAAAATGTTGGTCGATCTTCCG 59.609 41.667 0.00 0.00 0.00 4.30
2710 2931 4.350368 TGAAAGTGATGGTGAACTAGCA 57.650 40.909 0.00 0.00 41.72 3.49
2746 2987 6.484364 AATCACCCTGAAAAGAAAATGTGT 57.516 33.333 0.00 0.00 0.00 3.72
2767 3008 1.379710 TGGTGTTTGTGCAGGCTGT 60.380 52.632 17.16 0.00 0.00 4.40
2973 3214 0.926293 CCATCCTTTTCTGGCCCCTA 59.074 55.000 0.00 0.00 0.00 3.53
2982 3223 2.609610 TGGCCCCTAGTGGTGGTC 60.610 66.667 0.00 0.00 0.00 4.02
3015 3256 2.583593 GCCGTCGTCTCCAGCATC 60.584 66.667 0.00 0.00 0.00 3.91
3093 3347 1.415672 TTTCTTGCCCGTCTCCCACT 61.416 55.000 0.00 0.00 0.00 4.00
3094 3348 1.415672 TTCTTGCCCGTCTCCCACTT 61.416 55.000 0.00 0.00 0.00 3.16
3095 3349 1.376037 CTTGCCCGTCTCCCACTTC 60.376 63.158 0.00 0.00 0.00 3.01
3096 3350 3.234630 TTGCCCGTCTCCCACTTCG 62.235 63.158 0.00 0.00 0.00 3.79
3097 3351 3.692406 GCCCGTCTCCCACTTCGT 61.692 66.667 0.00 0.00 0.00 3.85
3102 3356 1.802337 CGTCTCCCACTTCGTGTCCA 61.802 60.000 0.00 0.00 0.00 4.02
3110 3364 3.605634 CCACTTCGTGTCCAATTCCATA 58.394 45.455 0.00 0.00 0.00 2.74
3114 3368 6.049149 CACTTCGTGTCCAATTCCATACTAT 58.951 40.000 0.00 0.00 0.00 2.12
3115 3369 6.538742 CACTTCGTGTCCAATTCCATACTATT 59.461 38.462 0.00 0.00 0.00 1.73
3261 3517 0.944311 TTCGCGAAGGCACTGTTCTC 60.944 55.000 19.38 0.00 40.86 2.87
3296 3554 4.219507 TGTTCTCCACTGCTGTTTTTGAAA 59.780 37.500 0.00 0.00 0.00 2.69
3318 3576 6.872628 AAACTTTGGGTTTGTAGCTAGTAC 57.127 37.500 0.00 0.00 45.29 2.73
3319 3577 5.820404 ACTTTGGGTTTGTAGCTAGTACT 57.180 39.130 0.00 0.00 32.19 2.73
3557 3823 2.040412 GAGGTCAAAATGGTCCAGGTCT 59.960 50.000 0.00 0.00 0.00 3.85
3606 3872 1.135803 CAACCAACGCCCGTCTTATTG 60.136 52.381 0.00 0.00 0.00 1.90
3617 3883 2.977169 CCGTCTTATTGCACCAAAAACG 59.023 45.455 0.00 0.00 0.00 3.60
3674 3940 8.862325 TTGAGCAAAATTTCTGGAAGATACTA 57.138 30.769 0.00 0.00 46.36 1.82
3708 3974 7.726079 CAATAAGTGCATTCATTGTTTCAGTG 58.274 34.615 0.00 0.00 0.00 3.66
3731 3997 5.125100 ACATCAATGTTGTTCACATGTCC 57.875 39.130 0.00 0.00 46.23 4.02
3744 4010 3.146066 CACATGTCCGGAAAGAAAAGGA 58.854 45.455 5.23 0.00 0.00 3.36
3798 4064 3.902261 TGATGCATGGCGATACATTTC 57.098 42.857 2.46 0.00 0.00 2.17
3914 4185 1.740025 GCATCTGCTAGTTGTTGGACC 59.260 52.381 0.00 0.00 38.21 4.46
3977 4250 2.158608 AGGAAGTGTTGTAAGCAAGGCT 60.159 45.455 0.00 0.00 42.56 4.58
3987 4260 1.856629 AAGCAAGGCTGGCATAACAT 58.143 45.000 17.80 0.00 39.62 2.71
4083 4369 8.725945 ACAAGATTGTATGGTAGCTACTGACCA 61.726 40.741 22.74 15.80 40.99 4.02
4086 4372 2.575108 TGGTAGCTACTGACCACGG 58.425 57.895 22.74 0.00 40.87 4.94
4185 4472 8.750298 AGGTATAACGCTAACATAAGCATATCT 58.250 33.333 0.00 0.00 42.91 1.98
4200 4487 9.956720 ATAAGCATATCTATTGCAGTTTTTGTC 57.043 29.630 0.00 0.00 42.62 3.18
4214 4501 7.335924 TGCAGTTTTTGTCTAATATGTACTCCC 59.664 37.037 0.00 0.00 0.00 4.30
4216 4503 9.099454 CAGTTTTTGTCTAATATGTACTCCCTC 57.901 37.037 0.00 0.00 0.00 4.30
4217 4504 9.047947 AGTTTTTGTCTAATATGTACTCCCTCT 57.952 33.333 0.00 0.00 0.00 3.69
4219 4506 7.973048 TTTGTCTAATATGTACTCCCTCTGT 57.027 36.000 0.00 0.00 0.00 3.41
4222 4509 9.483489 TTGTCTAATATGTACTCCCTCTGTAAA 57.517 33.333 0.00 0.00 0.00 2.01
4223 4510 8.910944 TGTCTAATATGTACTCCCTCTGTAAAC 58.089 37.037 0.00 0.00 0.00 2.01
4224 4511 9.134055 GTCTAATATGTACTCCCTCTGTAAACT 57.866 37.037 0.00 0.00 0.00 2.66
4232 4519 9.624373 TGTACTCCCTCTGTAAACTACTATAAG 57.376 37.037 0.00 0.00 0.00 1.73
4233 4520 9.844257 GTACTCCCTCTGTAAACTACTATAAGA 57.156 37.037 0.00 0.00 0.00 2.10
4235 4522 7.503230 ACTCCCTCTGTAAACTACTATAAGAGC 59.497 40.741 0.00 0.00 0.00 4.09
4236 4523 6.485984 TCCCTCTGTAAACTACTATAAGAGCG 59.514 42.308 0.00 0.00 0.00 5.03
4237 4524 6.262720 CCCTCTGTAAACTACTATAAGAGCGT 59.737 42.308 0.00 0.00 0.00 5.07
4239 4526 8.189460 CCTCTGTAAACTACTATAAGAGCGTTT 58.811 37.037 0.00 0.00 36.56 3.60
4246 4533 9.733219 AAACTACTATAAGAGCGTTTAGATCAC 57.267 33.333 0.00 0.00 37.82 3.06
4247 4534 8.680039 ACTACTATAAGAGCGTTTAGATCACT 57.320 34.615 0.00 0.00 37.82 3.41
4248 4535 9.775854 ACTACTATAAGAGCGTTTAGATCACTA 57.224 33.333 0.00 0.00 37.82 2.74
4251 4538 9.953697 ACTATAAGAGCGTTTAGATCACTAAAG 57.046 33.333 0.00 0.00 45.42 1.85
4252 4539 9.953697 CTATAAGAGCGTTTAGATCACTAAAGT 57.046 33.333 0.00 0.00 45.42 2.66
4254 4541 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
4255 4542 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
4258 4545 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
4259 4546 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
4260 4547 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
4266 4553 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
4268 4555 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
4270 4557 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
4293 4588 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
4294 4589 6.907853 ATATTAGTTTACGGAGGGAGTACC 57.092 41.667 0.00 0.00 40.67 3.34
4295 4590 2.610438 AGTTTACGGAGGGAGTACCA 57.390 50.000 0.00 0.00 43.89 3.25
4296 4591 2.893424 AGTTTACGGAGGGAGTACCAA 58.107 47.619 0.00 0.00 43.89 3.67
4297 4592 2.564504 AGTTTACGGAGGGAGTACCAAC 59.435 50.000 0.00 0.00 43.89 3.77
4298 4593 1.560505 TTACGGAGGGAGTACCAACC 58.439 55.000 0.00 0.00 43.89 3.77
4299 4594 0.706433 TACGGAGGGAGTACCAACCT 59.294 55.000 0.00 0.60 43.89 3.50
4300 4595 0.706433 ACGGAGGGAGTACCAACCTA 59.294 55.000 0.00 0.00 43.89 3.08
4301 4596 1.077663 ACGGAGGGAGTACCAACCTAA 59.922 52.381 0.00 0.00 43.89 2.69
4302 4597 2.181975 CGGAGGGAGTACCAACCTAAA 58.818 52.381 0.00 0.00 43.89 1.85
4303 4598 2.770232 CGGAGGGAGTACCAACCTAAAT 59.230 50.000 0.00 0.00 43.89 1.40
4304 4599 3.962718 CGGAGGGAGTACCAACCTAAATA 59.037 47.826 0.00 0.00 43.89 1.40
4305 4600 4.038883 CGGAGGGAGTACCAACCTAAATAG 59.961 50.000 0.00 0.00 43.89 1.73
4306 4601 4.347292 GGAGGGAGTACCAACCTAAATAGG 59.653 50.000 4.91 4.91 45.42 2.57
4307 4602 4.304659 AGGGAGTACCAACCTAAATAGGG 58.695 47.826 11.08 0.00 44.70 3.53
4308 4603 4.014973 AGGGAGTACCAACCTAAATAGGGA 60.015 45.833 11.08 0.00 44.70 4.20
4309 4604 4.912133 GGGAGTACCAACCTAAATAGGGAT 59.088 45.833 11.08 0.00 42.94 3.85
4310 4605 5.012871 GGGAGTACCAACCTAAATAGGGATC 59.987 48.000 11.08 0.00 42.94 3.36
4311 4606 5.845065 GGAGTACCAACCTAAATAGGGATCT 59.155 44.000 11.08 1.32 40.88 2.75
4312 4607 6.329460 GGAGTACCAACCTAAATAGGGATCTT 59.671 42.308 11.08 0.00 40.88 2.40
4313 4608 7.689559 GGAGTACCAACCTAAATAGGGATCTTG 60.690 44.444 11.08 6.12 40.88 3.02
4329 4624 8.611051 AGGGATCTTGTCCTATTATACATACC 57.389 38.462 0.00 0.00 46.91 2.73
4330 4625 7.342284 AGGGATCTTGTCCTATTATACATACCG 59.658 40.741 0.00 0.00 46.91 4.02
4331 4626 7.417570 GGGATCTTGTCCTATTATACATACCGG 60.418 44.444 0.00 0.00 46.91 5.28
4332 4627 7.123847 GGATCTTGTCCTATTATACATACCGGT 59.876 40.741 13.98 13.98 44.16 5.28
4333 4628 7.844493 TCTTGTCCTATTATACATACCGGTT 57.156 36.000 15.04 0.00 0.00 4.44
4334 4629 7.663827 TCTTGTCCTATTATACATACCGGTTG 58.336 38.462 15.04 13.82 0.00 3.77
4335 4630 6.982160 TGTCCTATTATACATACCGGTTGT 57.018 37.500 15.04 19.03 0.00 3.32
4336 4631 6.751157 TGTCCTATTATACATACCGGTTGTG 58.249 40.000 23.95 20.19 0.00 3.33
4337 4632 6.161381 GTCCTATTATACATACCGGTTGTGG 58.839 44.000 23.95 17.58 0.00 4.17
4338 4633 5.840149 TCCTATTATACATACCGGTTGTGGT 59.160 40.000 23.95 15.56 46.26 4.16
4346 4641 2.943036 ACCGGTTGTGGTATTGAGTT 57.057 45.000 0.00 0.00 41.55 3.01
4347 4642 3.217681 ACCGGTTGTGGTATTGAGTTT 57.782 42.857 0.00 0.00 41.55 2.66
4348 4643 3.558033 ACCGGTTGTGGTATTGAGTTTT 58.442 40.909 0.00 0.00 41.55 2.43
4349 4644 3.955551 ACCGGTTGTGGTATTGAGTTTTT 59.044 39.130 0.00 0.00 41.55 1.94
4374 4669 7.810766 TTTTATATTTTCTTTGCTCCGCTTG 57.189 32.000 0.00 0.00 0.00 4.01
4375 4670 2.070262 ATTTTCTTTGCTCCGCTTGC 57.930 45.000 0.00 0.00 0.00 4.01
4376 4671 0.317770 TTTTCTTTGCTCCGCTTGCG 60.318 50.000 8.14 8.14 0.00 4.85
4377 4672 1.163420 TTTCTTTGCTCCGCTTGCGA 61.163 50.000 16.99 2.09 0.00 5.10
4378 4673 1.568612 TTCTTTGCTCCGCTTGCGAG 61.569 55.000 16.99 12.25 0.00 5.03
4383 4678 2.181777 CTCCGCTTGCGAGCTGTA 59.818 61.111 23.42 7.85 46.96 2.74
4384 4679 1.446099 CTCCGCTTGCGAGCTGTAA 60.446 57.895 23.42 5.45 46.96 2.41
4385 4680 0.807667 CTCCGCTTGCGAGCTGTAAT 60.808 55.000 23.42 0.00 46.96 1.89
4386 4681 1.083806 TCCGCTTGCGAGCTGTAATG 61.084 55.000 23.42 6.82 46.96 1.90
4387 4682 1.083806 CCGCTTGCGAGCTGTAATGA 61.084 55.000 23.42 0.00 46.96 2.57
4388 4683 0.721154 CGCTTGCGAGCTGTAATGAA 59.279 50.000 23.42 0.00 46.96 2.57
4389 4684 1.328680 CGCTTGCGAGCTGTAATGAAT 59.671 47.619 23.42 0.00 46.96 2.57
4390 4685 2.598439 CGCTTGCGAGCTGTAATGAATC 60.598 50.000 23.42 0.00 46.96 2.52
4391 4686 2.611292 GCTTGCGAGCTGTAATGAATCT 59.389 45.455 19.25 0.00 45.65 2.40
4392 4687 3.804325 GCTTGCGAGCTGTAATGAATCTA 59.196 43.478 19.25 0.00 45.65 1.98
4393 4688 4.271049 GCTTGCGAGCTGTAATGAATCTAA 59.729 41.667 19.25 0.00 45.65 2.10
4394 4689 5.557893 GCTTGCGAGCTGTAATGAATCTAAG 60.558 44.000 19.25 0.00 45.65 2.18
4395 4690 5.262588 TGCGAGCTGTAATGAATCTAAGA 57.737 39.130 0.00 0.00 0.00 2.10
4396 4691 5.043903 TGCGAGCTGTAATGAATCTAAGAC 58.956 41.667 0.00 0.00 0.00 3.01
4397 4692 5.163509 TGCGAGCTGTAATGAATCTAAGACT 60.164 40.000 0.00 0.00 0.00 3.24
4398 4693 5.751028 GCGAGCTGTAATGAATCTAAGACTT 59.249 40.000 0.00 0.00 0.00 3.01
4399 4694 6.256757 GCGAGCTGTAATGAATCTAAGACTTT 59.743 38.462 0.00 0.00 0.00 2.66
4400 4695 7.616673 CGAGCTGTAATGAATCTAAGACTTTG 58.383 38.462 0.00 0.00 0.00 2.77
4401 4696 7.276658 CGAGCTGTAATGAATCTAAGACTTTGT 59.723 37.037 0.00 0.00 0.00 2.83
4402 4697 8.261492 AGCTGTAATGAATCTAAGACTTTGTG 57.739 34.615 0.00 0.00 0.00 3.33
4403 4698 6.963805 GCTGTAATGAATCTAAGACTTTGTGC 59.036 38.462 0.00 0.00 0.00 4.57
4404 4699 7.148340 GCTGTAATGAATCTAAGACTTTGTGCT 60.148 37.037 0.00 0.00 0.00 4.40
4405 4700 9.371136 CTGTAATGAATCTAAGACTTTGTGCTA 57.629 33.333 0.00 0.00 0.00 3.49
4406 4701 9.151471 TGTAATGAATCTAAGACTTTGTGCTAC 57.849 33.333 0.00 0.00 0.00 3.58
4407 4702 9.372369 GTAATGAATCTAAGACTTTGTGCTACT 57.628 33.333 0.00 0.00 0.00 2.57
4408 4703 8.854614 AATGAATCTAAGACTTTGTGCTACTT 57.145 30.769 0.00 0.00 0.00 2.24
4409 4704 7.891183 TGAATCTAAGACTTTGTGCTACTTC 57.109 36.000 0.00 0.00 0.00 3.01
4410 4705 6.586463 TGAATCTAAGACTTTGTGCTACTTCG 59.414 38.462 0.00 0.00 0.00 3.79
4411 4706 5.700722 TCTAAGACTTTGTGCTACTTCGA 57.299 39.130 0.00 0.00 0.00 3.71
4412 4707 5.700846 TCTAAGACTTTGTGCTACTTCGAG 58.299 41.667 0.00 0.00 0.00 4.04
4413 4708 4.585955 AAGACTTTGTGCTACTTCGAGA 57.414 40.909 0.00 0.00 0.00 4.04
4414 4709 3.903360 AGACTTTGTGCTACTTCGAGAC 58.097 45.455 0.00 0.00 0.00 3.36
4415 4710 3.570550 AGACTTTGTGCTACTTCGAGACT 59.429 43.478 0.00 0.00 0.00 3.24
4416 4711 4.038162 AGACTTTGTGCTACTTCGAGACTT 59.962 41.667 0.00 0.00 0.00 3.01
4417 4712 4.694339 ACTTTGTGCTACTTCGAGACTTT 58.306 39.130 0.00 0.00 0.00 2.66
4418 4713 5.116882 ACTTTGTGCTACTTCGAGACTTTT 58.883 37.500 0.00 0.00 0.00 2.27
4419 4714 6.278363 ACTTTGTGCTACTTCGAGACTTTTA 58.722 36.000 0.00 0.00 0.00 1.52
4420 4715 6.759827 ACTTTGTGCTACTTCGAGACTTTTAA 59.240 34.615 0.00 0.00 0.00 1.52
4421 4716 7.441458 ACTTTGTGCTACTTCGAGACTTTTAAT 59.559 33.333 0.00 0.00 0.00 1.40
4422 4717 8.821147 TTTGTGCTACTTCGAGACTTTTAATA 57.179 30.769 0.00 0.00 0.00 0.98
4423 4718 8.821147 TTGTGCTACTTCGAGACTTTTAATAA 57.179 30.769 0.00 0.00 0.00 1.40
4424 4719 8.997621 TGTGCTACTTCGAGACTTTTAATAAT 57.002 30.769 0.00 0.00 0.00 1.28
4431 4726 9.046296 ACTTCGAGACTTTTAATAATATGGCTG 57.954 33.333 0.00 0.00 0.00 4.85
4432 4727 7.421530 TCGAGACTTTTAATAATATGGCTGC 57.578 36.000 0.00 0.00 0.00 5.25
4433 4728 6.989759 TCGAGACTTTTAATAATATGGCTGCA 59.010 34.615 0.50 0.00 0.00 4.41
4434 4729 7.661437 TCGAGACTTTTAATAATATGGCTGCAT 59.339 33.333 0.50 0.00 0.00 3.96
4435 4730 7.747799 CGAGACTTTTAATAATATGGCTGCATG 59.252 37.037 0.50 0.00 0.00 4.06
4436 4731 7.373493 AGACTTTTAATAATATGGCTGCATGC 58.627 34.615 11.82 11.82 41.94 4.06
4437 4732 7.014518 AGACTTTTAATAATATGGCTGCATGCA 59.985 33.333 21.29 21.29 45.15 3.96
4438 4733 7.673180 ACTTTTAATAATATGGCTGCATGCAT 58.327 30.769 22.97 9.00 45.15 3.96
4439 4734 7.816031 ACTTTTAATAATATGGCTGCATGCATC 59.184 33.333 22.97 17.75 45.15 3.91
4440 4735 4.365899 AATAATATGGCTGCATGCATCG 57.634 40.909 22.97 12.00 45.15 3.84
4441 4736 1.612676 AATATGGCTGCATGCATCGT 58.387 45.000 22.97 19.00 45.15 3.73
4442 4737 1.612676 ATATGGCTGCATGCATCGTT 58.387 45.000 22.97 10.26 45.15 3.85
4443 4738 0.946528 TATGGCTGCATGCATCGTTC 59.053 50.000 22.97 9.58 45.15 3.95
4444 4739 1.033202 ATGGCTGCATGCATCGTTCA 61.033 50.000 22.97 14.74 45.15 3.18
4445 4740 1.063649 GGCTGCATGCATCGTTCAG 59.936 57.895 22.97 8.76 45.15 3.02
4446 4741 1.371337 GGCTGCATGCATCGTTCAGA 61.371 55.000 22.97 0.00 45.15 3.27
4447 4742 0.661552 GCTGCATGCATCGTTCAGAT 59.338 50.000 22.97 0.00 42.31 2.90
4455 4750 3.376218 ATCGTTCAGATGCAGAGGC 57.624 52.632 0.00 0.00 38.36 4.70
4456 4751 0.179062 ATCGTTCAGATGCAGAGGCC 60.179 55.000 0.00 0.00 38.36 5.19
4457 4752 2.169789 CGTTCAGATGCAGAGGCCG 61.170 63.158 0.00 0.00 40.13 6.13
4458 4753 1.817099 GTTCAGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 40.13 6.13
4459 4754 3.035173 TTCAGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 40.13 5.73
4460 4755 3.790437 CAGATGCAGAGGCCGGGT 61.790 66.667 2.18 0.00 40.13 5.28
4461 4756 3.790437 AGATGCAGAGGCCGGGTG 61.790 66.667 2.18 0.00 40.13 4.61
4476 4771 1.967535 GGTGCAAGCCTCCTTTTCC 59.032 57.895 0.00 0.00 0.00 3.13
4477 4772 0.827507 GGTGCAAGCCTCCTTTTCCA 60.828 55.000 0.00 0.00 0.00 3.53
4478 4773 1.039856 GTGCAAGCCTCCTTTTCCAA 58.960 50.000 0.00 0.00 0.00 3.53
4479 4774 1.412343 GTGCAAGCCTCCTTTTCCAAA 59.588 47.619 0.00 0.00 0.00 3.28
4480 4775 2.114616 TGCAAGCCTCCTTTTCCAAAA 58.885 42.857 0.00 0.00 0.00 2.44
4481 4776 2.503356 TGCAAGCCTCCTTTTCCAAAAA 59.497 40.909 0.00 0.00 0.00 1.94
4506 4801 2.564947 ACCGTACCAACCCAAATACGTA 59.435 45.455 0.00 0.00 38.95 3.57
4507 4802 3.189285 CCGTACCAACCCAAATACGTAG 58.811 50.000 0.08 0.00 38.95 3.51
4533 4829 4.969484 TGTTCTTTTACACCTTCCTCTCC 58.031 43.478 0.00 0.00 0.00 3.71
4555 4851 8.428852 TCTCCGATCAATGTTGGAATTTCTATA 58.571 33.333 0.00 0.00 31.25 1.31
4626 5079 7.999450 AATAGATACTACTCCCTCCGTAAAG 57.001 40.000 0.00 0.00 0.00 1.85
4636 5089 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4637 5090 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4638 5091 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4639 5092 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4643 5096 7.902032 TCCGTAAAGAAATATAAGAGCGTTTG 58.098 34.615 0.00 0.00 0.00 2.93
4644 5097 6.627671 CCGTAAAGAAATATAAGAGCGTTTGC 59.372 38.462 0.00 0.00 43.24 3.68
4661 5114 7.576643 GCGTTTGCTCTTATATTTCTTTACG 57.423 36.000 0.00 0.00 38.39 3.18
4662 5115 6.627671 GCGTTTGCTCTTATATTTCTTTACGG 59.372 38.462 0.00 0.00 38.39 4.02
4663 5116 7.464977 GCGTTTGCTCTTATATTTCTTTACGGA 60.465 37.037 0.00 0.00 38.39 4.69
4664 5117 8.056571 CGTTTGCTCTTATATTTCTTTACGGAG 58.943 37.037 0.00 0.00 0.00 4.63
4665 5118 8.336080 GTTTGCTCTTATATTTCTTTACGGAGG 58.664 37.037 0.00 0.00 0.00 4.30
4666 5119 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
4667 5120 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
4699 5169 9.383519 TCATAGATGAGTCTGTACAAAAATTCC 57.616 33.333 0.00 0.00 35.87 3.01
4704 5275 7.581213 TGAGTCTGTACAAAAATTCCAACAT 57.419 32.000 0.00 0.00 0.00 2.71
4720 5291 4.832266 TCCAACATTACCAGATTTTGCACT 59.168 37.500 0.00 0.00 0.00 4.40
4794 5365 2.546373 GCAGTGCACATGGTGTTTCATT 60.546 45.455 21.04 0.00 35.75 2.57
4802 5373 5.681880 CACATGGTGTTTCATTTTGAATGC 58.318 37.500 0.00 0.00 36.11 3.56
4981 5552 1.946984 TGAGACGATAAACCTGGGGT 58.053 50.000 0.00 0.00 37.65 4.95
5193 5764 0.246910 GGTTCCTGGAGAAGTCGACC 59.753 60.000 13.01 0.00 34.29 4.79
5208 5779 2.281276 ACCCTTTTCGTCGGTGGC 60.281 61.111 0.00 0.00 0.00 5.01
5225 5796 2.952245 CAGTTCTGCTGCTGCCAC 59.048 61.111 13.47 7.27 38.52 5.01
5335 5909 1.406539 CCTGCAACTGCTTGTTTCTGT 59.593 47.619 2.95 0.00 42.66 3.41
5337 5911 2.855963 CTGCAACTGCTTGTTTCTGTTG 59.144 45.455 2.95 0.00 42.48 3.33
5592 6185 3.414422 CGTCGTCTTTTGCTTCTTTTTCG 59.586 43.478 0.00 0.00 0.00 3.46
5677 6274 5.695851 AGGAGCTTCTGTAATTTTGTGTG 57.304 39.130 0.00 0.00 0.00 3.82
5748 6355 2.223845 TGTTGTGTTGTGAGATGATGCG 59.776 45.455 0.00 0.00 0.00 4.73
5766 6385 1.354506 GCGTGGCATGATCTTCAGC 59.645 57.895 11.71 0.00 0.00 4.26
6047 6681 9.362539 GTGCATCATTTATTCATTTTCTTCTGT 57.637 29.630 0.00 0.00 0.00 3.41
6090 6725 1.151668 CTTCTGCTCTTGTGAACCCG 58.848 55.000 0.00 0.00 0.00 5.28
6092 6727 2.281484 TGCTCTTGTGAACCCGGC 60.281 61.111 0.00 0.00 0.00 6.13
6093 6728 2.032681 GCTCTTGTGAACCCGGCT 59.967 61.111 0.00 0.00 0.00 5.52
6095 6730 0.741221 GCTCTTGTGAACCCGGCTAG 60.741 60.000 0.00 0.00 0.00 3.42
6096 6731 0.895530 CTCTTGTGAACCCGGCTAGA 59.104 55.000 0.00 0.00 0.00 2.43
6098 6733 0.608640 CTTGTGAACCCGGCTAGACT 59.391 55.000 0.00 0.00 0.00 3.24
6099 6734 0.606604 TTGTGAACCCGGCTAGACTC 59.393 55.000 0.00 0.00 0.00 3.36
6100 6735 1.139095 GTGAACCCGGCTAGACTCG 59.861 63.158 0.00 0.00 0.00 4.18
6101 6736 2.104530 GAACCCGGCTAGACTCGC 59.895 66.667 0.00 0.00 0.00 5.03
6200 6854 8.770010 TTTTAGGGTCATAAGAAAGTTCCAAA 57.230 30.769 0.00 0.00 0.00 3.28
6201 6855 8.770010 TTTAGGGTCATAAGAAAGTTCCAAAA 57.230 30.769 0.00 0.00 0.00 2.44
6202 6856 8.770010 TTAGGGTCATAAGAAAGTTCCAAAAA 57.230 30.769 0.00 0.00 0.00 1.94
6236 6908 9.733219 AAAATGCGAATTTTCAAATGAATGTTT 57.267 22.222 8.37 0.00 33.54 2.83
6237 6909 8.716619 AATGCGAATTTTCAAATGAATGTTTG 57.283 26.923 0.00 1.47 39.78 2.93
6290 6962 6.494842 ACGATGTTCGGGAAATCATAAAATG 58.505 36.000 1.69 0.00 45.59 2.32
6293 6965 8.126074 CGATGTTCGGGAAATCATAAAATGTTA 58.874 33.333 0.00 0.00 36.00 2.41
6316 7028 5.051816 AGTGGATTCACAAAATGTTTGCAG 58.948 37.500 6.96 0.00 45.91 4.41
6330 7042 8.441312 AAATGTTTGCAGATTCAAAAGATGTT 57.559 26.923 0.00 0.00 37.65 2.71
6333 7045 7.040494 TGTTTGCAGATTCAAAAGATGTTCAA 58.960 30.769 0.00 0.00 37.65 2.69
6515 7227 5.521735 CACGAATTTCAACAAATGTTCCCAA 59.478 36.000 0.00 0.00 35.83 4.12
6523 7235 7.551035 TCAACAAATGTTCCCAAATTTCAAG 57.449 32.000 0.00 0.00 35.83 3.02
6532 7244 6.533367 TGTTCCCAAATTTCAAGAAAAGTTCG 59.467 34.615 0.00 0.00 33.11 3.95
6544 7256 6.905076 TCAAGAAAAGTTCGTCGATTCAAAAG 59.095 34.615 8.55 0.00 34.02 2.27
6545 7257 6.359480 AGAAAAGTTCGTCGATTCAAAAGT 57.641 33.333 8.55 0.00 34.02 2.66
6546 7258 6.192360 AGAAAAGTTCGTCGATTCAAAAGTG 58.808 36.000 8.55 0.00 34.02 3.16
6547 7259 5.479716 AAAGTTCGTCGATTCAAAAGTGT 57.520 34.783 0.00 0.00 0.00 3.55
6548 7260 4.452890 AGTTCGTCGATTCAAAAGTGTG 57.547 40.909 0.00 0.00 0.00 3.82
6549 7261 2.941891 TCGTCGATTCAAAAGTGTGC 57.058 45.000 0.00 0.00 0.00 4.57
6550 7262 2.205911 TCGTCGATTCAAAAGTGTGCA 58.794 42.857 0.00 0.00 0.00 4.57
6558 7271 3.607422 TCAAAAGTGTGCACTGATTCG 57.393 42.857 19.41 3.01 41.58 3.34
6582 7295 7.823149 GGAAAATGTCCATGAATCTGAAAAG 57.177 36.000 0.00 0.00 46.97 2.27
6583 7296 7.381323 GGAAAATGTCCATGAATCTGAAAAGT 58.619 34.615 0.00 0.00 46.97 2.66
6586 7299 6.906157 ATGTCCATGAATCTGAAAAGTGTT 57.094 33.333 0.00 0.00 0.00 3.32
6595 7308 6.643360 TGAATCTGAAAAGTGTTCATGCATTG 59.357 34.615 0.00 0.00 0.00 2.82
6597 7310 4.052608 CTGAAAAGTGTTCATGCATTGCA 58.947 39.130 14.72 14.72 44.86 4.08
6671 7425 2.046314 TTGGCAAGCTCGTAGGCC 60.046 61.111 0.00 0.00 46.58 5.19
6676 7430 1.520342 CAAGCTCGTAGGCCTGCTC 60.520 63.158 17.99 6.00 34.38 4.26
6695 7449 2.203480 TGGTGGTTGGCAAGCTCC 60.203 61.111 32.50 32.50 41.56 4.70
6707 7461 0.815734 CAAGCTCCTGCCATTGGAAG 59.184 55.000 6.95 5.05 40.80 3.46
6709 7463 0.323178 AGCTCCTGCCATTGGAAGTG 60.323 55.000 9.95 3.56 40.80 3.16
6728 7482 7.341512 TGGAAGTGCCAAAATATATGTTGATGA 59.658 33.333 16.02 0.00 45.87 2.92
6750 7504 2.843701 GGTATAGACCGAGGAGAACGA 58.156 52.381 0.00 0.00 35.52 3.85
6751 7505 3.209410 GGTATAGACCGAGGAGAACGAA 58.791 50.000 0.00 0.00 35.52 3.85
6756 7510 0.541296 ACCGAGGAGAACGAAAGGGA 60.541 55.000 0.00 0.00 0.00 4.20
6758 7512 0.458716 CGAGGAGAACGAAAGGGAGC 60.459 60.000 0.00 0.00 0.00 4.70
6776 7530 0.316204 GCTGTCAGTGCAATTTGCCT 59.684 50.000 18.27 11.85 44.23 4.75
6784 7539 0.171679 TGCAATTTGCCTGATGCGAG 59.828 50.000 18.27 0.00 44.23 5.03
6808 7564 2.489938 ACATACTTGGGTGCATCGTT 57.510 45.000 0.00 0.00 0.00 3.85
6842 7598 2.040278 TCTTGAGGCCATTGCTTGTAGT 59.960 45.455 5.01 0.00 37.74 2.73
6856 7612 5.789521 TGCTTGTAGTCATTGCTTGTACTA 58.210 37.500 0.00 0.00 0.00 1.82
6862 7618 5.677319 AGTCATTGCTTGTACTAAGCCTA 57.323 39.130 20.20 12.56 42.36 3.93
6884 7640 6.540189 CCTATTTGAAGGTCTTACACATCCAG 59.460 42.308 0.00 0.00 31.46 3.86
6899 7655 0.106769 TCCAGCAACACTTGAAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 126 2.221169 CTGGCCATGTATAACGTGCAT 58.779 47.619 5.51 0.00 33.88 3.96
163 167 0.603707 ACACTTGTGGACGGATGCAG 60.604 55.000 5.72 0.00 0.00 4.41
224 229 7.185565 TCCCATCCTTATTACCATTTTGAACA 58.814 34.615 0.00 0.00 0.00 3.18
325 336 7.973388 GCAAGTGCATATACAAGAAAATAACCA 59.027 33.333 0.00 0.00 41.59 3.67
453 468 4.935495 ATGCTATGCCGCCACCCG 62.935 66.667 0.00 0.00 0.00 5.28
461 476 2.421424 GGATTGATCCGAATGCTATGCC 59.579 50.000 0.00 0.00 37.19 4.40
507 522 6.582677 AAGTAGAATCCCATAGATCGACAG 57.417 41.667 0.00 0.00 32.47 3.51
513 528 5.071788 TCGGCAAAAGTAGAATCCCATAGAT 59.928 40.000 0.00 0.00 36.48 1.98
523 538 4.398549 CGACAAATCGGCAAAAGTAGAA 57.601 40.909 0.00 0.00 44.99 2.10
569 587 8.998377 GGATGCATACAACCAAATTTAAAAGTT 58.002 29.630 3.28 0.00 38.58 2.66
688 707 2.957491 TTTTGCGGGCAATCCTATTG 57.043 45.000 6.95 0.00 35.70 1.90
817 836 7.912672 TCAAAGTTGACGGTCAAGGAGACAG 62.913 48.000 22.99 10.12 46.26 3.51
822 841 2.557317 GTCAAAGTTGACGGTCAAGGA 58.443 47.619 22.99 14.95 46.80 3.36
832 851 3.632145 GCTTGAAAGGAGGTCAAAGTTGA 59.368 43.478 0.00 0.00 34.68 3.18
965 988 6.874664 GGGTTTTGCCTTTCGGATTTATTTAA 59.125 34.615 0.00 0.00 37.43 1.52
1005 1028 1.707200 GGAGAGGGAGAGGGGAACT 59.293 63.158 0.00 0.00 0.00 3.01
1023 1046 2.355717 AAGAAAGAAGACGCGAGAGG 57.644 50.000 15.93 0.00 0.00 3.69
1035 1060 3.469008 TGTTGCGAGGAGAAAGAAAGA 57.531 42.857 0.00 0.00 0.00 2.52
1036 1061 4.756084 AATGTTGCGAGGAGAAAGAAAG 57.244 40.909 0.00 0.00 0.00 2.62
1037 1062 4.319477 CGAAATGTTGCGAGGAGAAAGAAA 60.319 41.667 0.00 0.00 0.00 2.52
1038 1063 3.186409 CGAAATGTTGCGAGGAGAAAGAA 59.814 43.478 0.00 0.00 0.00 2.52
1062 1087 2.432628 GCCCGTGAGTTGAGTCGG 60.433 66.667 0.00 0.00 42.22 4.79
1541 1583 0.247736 AAAGACGCGAGGAAGCAGAT 59.752 50.000 15.93 0.00 36.85 2.90
1545 1587 1.569479 AAGCAAAGACGCGAGGAAGC 61.569 55.000 15.93 11.46 36.85 3.86
1546 1588 0.868406 AAAGCAAAGACGCGAGGAAG 59.132 50.000 15.93 0.00 36.85 3.46
1548 1590 1.841663 GCAAAGCAAAGACGCGAGGA 61.842 55.000 15.93 0.00 36.85 3.71
1549 1591 1.441016 GCAAAGCAAAGACGCGAGG 60.441 57.895 15.93 0.00 36.85 4.63
1552 1594 1.081242 ATGGCAAAGCAAAGACGCG 60.081 52.632 3.53 3.53 36.85 6.01
1553 1595 1.010419 CCATGGCAAAGCAAAGACGC 61.010 55.000 0.00 0.00 0.00 5.19
1555 1597 0.037046 CCCCATGGCAAAGCAAAGAC 60.037 55.000 6.09 0.00 0.00 3.01
1558 1600 1.479368 GGACCCCATGGCAAAGCAAA 61.479 55.000 6.09 0.00 33.59 3.68
1560 1602 2.283821 GGACCCCATGGCAAAGCA 60.284 61.111 6.09 0.00 33.59 3.91
1561 1603 3.076916 GGGACCCCATGGCAAAGC 61.077 66.667 6.09 0.00 35.81 3.51
1562 1604 2.755469 CGGGACCCCATGGCAAAG 60.755 66.667 6.09 0.00 35.37 2.77
1563 1605 3.577334 GACGGGACCCCATGGCAAA 62.577 63.158 6.09 0.00 35.37 3.68
1579 1621 2.434359 CCGGCAGAAACTCGGGAC 60.434 66.667 0.00 0.00 40.07 4.46
1583 1625 2.317609 CCACACCGGCAGAAACTCG 61.318 63.158 0.00 0.00 0.00 4.18
1584 1626 3.655481 CCACACCGGCAGAAACTC 58.345 61.111 0.00 0.00 0.00 3.01
1606 1648 3.576078 TCCCAAGAAAGAGCAGAACAA 57.424 42.857 0.00 0.00 0.00 2.83
1613 1655 2.899900 ACCCATTTTCCCAAGAAAGAGC 59.100 45.455 0.00 0.00 42.78 4.09
1617 1659 2.103941 GCACACCCATTTTCCCAAGAAA 59.896 45.455 0.00 0.00 40.26 2.52
1626 1668 0.244450 CATCGCTGCACACCCATTTT 59.756 50.000 0.00 0.00 0.00 1.82
1689 1731 2.954868 GCACGAGTATGACGCCCG 60.955 66.667 0.00 0.00 0.00 6.13
1763 1805 4.154556 ACGGAAAAACACAAGAACGAAAGA 59.845 37.500 0.00 0.00 0.00 2.52
1767 1809 2.096174 CCACGGAAAAACACAAGAACGA 59.904 45.455 0.00 0.00 0.00 3.85
1768 1810 2.446282 CCACGGAAAAACACAAGAACG 58.554 47.619 0.00 0.00 0.00 3.95
1769 1811 2.804647 CCCACGGAAAAACACAAGAAC 58.195 47.619 0.00 0.00 0.00 3.01
1771 1813 0.741915 GCCCACGGAAAAACACAAGA 59.258 50.000 0.00 0.00 0.00 3.02
1783 1834 1.672356 CTCTGTTTCCAGCCCACGG 60.672 63.158 0.00 0.00 38.66 4.94
1788 1839 3.062042 CAAAAATGCTCTGTTTCCAGCC 58.938 45.455 0.00 0.00 38.66 4.85
1822 1874 0.250234 TTCAGCACAAGGGATCGGAG 59.750 55.000 0.00 0.00 0.00 4.63
1852 1904 1.064389 GGCCAAGGCAGAATTAGACCT 60.064 52.381 13.87 0.00 44.11 3.85
1855 1907 0.618458 ACGGCCAAGGCAGAATTAGA 59.382 50.000 17.99 0.00 44.11 2.10
1857 1909 0.679640 CCACGGCCAAGGCAGAATTA 60.680 55.000 17.99 0.00 44.11 1.40
1858 1910 1.978617 CCACGGCCAAGGCAGAATT 60.979 57.895 17.99 0.00 44.11 2.17
1880 1941 0.251354 GCAGCAGAATCTGGTCCTCA 59.749 55.000 12.49 0.00 40.40 3.86
1888 1949 3.167485 TGGAAAATTGGCAGCAGAATCT 58.833 40.909 0.00 0.00 0.00 2.40
1905 1966 6.090483 TGATTCGCCACTAAAAATTTGGAA 57.910 33.333 0.00 0.00 31.39 3.53
1907 1968 6.777526 TTTGATTCGCCACTAAAAATTTGG 57.222 33.333 0.00 0.00 0.00 3.28
1909 1970 8.776376 ATCATTTGATTCGCCACTAAAAATTT 57.224 26.923 0.00 0.00 0.00 1.82
1912 1973 6.329496 GGATCATTTGATTCGCCACTAAAAA 58.671 36.000 0.00 0.00 34.37 1.94
1946 2007 4.047822 GAGGAACGCAATCAGTATCTCAG 58.952 47.826 0.00 0.00 0.00 3.35
1947 2008 3.701542 AGAGGAACGCAATCAGTATCTCA 59.298 43.478 0.00 0.00 0.00 3.27
1948 2009 4.047822 CAGAGGAACGCAATCAGTATCTC 58.952 47.826 0.00 0.00 0.00 2.75
1949 2010 3.739519 GCAGAGGAACGCAATCAGTATCT 60.740 47.826 0.00 0.00 0.00 1.98
1952 2013 1.275010 TGCAGAGGAACGCAATCAGTA 59.725 47.619 0.00 0.00 34.59 2.74
1954 2015 1.376543 ATGCAGAGGAACGCAATCAG 58.623 50.000 0.00 0.00 42.37 2.90
1955 2016 1.739466 GAATGCAGAGGAACGCAATCA 59.261 47.619 0.00 0.00 42.37 2.57
2057 2145 4.113815 CCGAAGATGCCCAGCCCA 62.114 66.667 0.00 0.00 0.00 5.36
2060 2148 2.203126 CTCCCGAAGATGCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
2090 2178 1.153349 GAAGAAGCCGTAGCCCAGG 60.153 63.158 0.00 0.00 41.25 4.45
2186 2274 1.598685 GCCGGTCGTCCCTTTTGAA 60.599 57.895 1.90 0.00 0.00 2.69
2213 2307 3.722147 TCTCTCACTCACTTTTCACAGC 58.278 45.455 0.00 0.00 0.00 4.40
2223 2317 5.273674 TCATCCATTGATCTCTCACTCAC 57.726 43.478 0.00 0.00 0.00 3.51
2237 2331 4.381932 GGCGAGAAACCAAAATCATCCATT 60.382 41.667 0.00 0.00 0.00 3.16
2239 2333 2.491693 GGCGAGAAACCAAAATCATCCA 59.508 45.455 0.00 0.00 0.00 3.41
2242 2336 1.472480 CCGGCGAGAAACCAAAATCAT 59.528 47.619 9.30 0.00 0.00 2.45
2283 2377 2.042831 GCAGCTGCCCTTGATCGTT 61.043 57.895 28.76 0.00 34.31 3.85
2439 2533 5.700402 AGACAGGTAATCCAGTGCTAATT 57.300 39.130 0.00 0.00 33.57 1.40
2451 2545 9.771534 GATCTTGAATAGCTTTAGACAGGTAAT 57.228 33.333 0.00 0.00 30.68 1.89
2516 2698 5.408604 AGATCACAGTACGGAACAAAACATC 59.591 40.000 0.00 0.00 0.00 3.06
2518 2700 4.699637 AGATCACAGTACGGAACAAAACA 58.300 39.130 0.00 0.00 0.00 2.83
2519 2701 5.007332 ACAAGATCACAGTACGGAACAAAAC 59.993 40.000 0.00 0.00 0.00 2.43
2527 2709 0.992072 CGCACAAGATCACAGTACGG 59.008 55.000 0.00 0.00 0.00 4.02
2529 2711 2.663602 CTGTCGCACAAGATCACAGTAC 59.336 50.000 0.00 0.00 31.59 2.73
2550 2732 2.053627 CGGCATGTTTTTCTTGTCAGC 58.946 47.619 0.00 0.00 0.00 4.26
2551 2733 3.044986 CACGGCATGTTTTTCTTGTCAG 58.955 45.455 0.00 0.00 0.00 3.51
2552 2734 2.223688 CCACGGCATGTTTTTCTTGTCA 60.224 45.455 0.00 0.00 0.00 3.58
2553 2735 2.393764 CCACGGCATGTTTTTCTTGTC 58.606 47.619 0.00 0.00 0.00 3.18
2554 2736 1.537990 GCCACGGCATGTTTTTCTTGT 60.538 47.619 2.36 0.00 41.49 3.16
2555 2737 1.139163 GCCACGGCATGTTTTTCTTG 58.861 50.000 2.36 0.00 41.49 3.02
2586 2797 9.326413 GGCTTTACTATGCTTCATTAAGTCTAA 57.674 33.333 0.00 0.00 34.99 2.10
2621 2836 0.245539 TGACCGGAAGATCGACCAAC 59.754 55.000 9.46 3.50 0.00 3.77
2623 2838 0.459899 CATGACCGGAAGATCGACCA 59.540 55.000 9.46 0.00 0.00 4.02
2633 2848 0.108186 GTGCAGTGATCATGACCGGA 60.108 55.000 9.46 0.00 0.00 5.14
2636 2851 2.353889 GTGATGTGCAGTGATCATGACC 59.646 50.000 0.00 0.00 31.40 4.02
2710 2931 0.031994 GGTGATTTTTGGCGTGCACT 59.968 50.000 16.19 0.00 0.00 4.40
2746 2987 0.969917 AGCCTGCACAAACACCACAA 60.970 50.000 0.00 0.00 0.00 3.33
2805 3046 1.206132 AGCGGTATGTCCACGATCAAA 59.794 47.619 0.00 0.00 35.57 2.69
3015 3256 0.733729 CTCCGTAGAGACCCACGAAG 59.266 60.000 0.00 0.00 43.39 3.79
3093 3347 5.751509 CGAATAGTATGGAATTGGACACGAA 59.248 40.000 0.00 0.00 0.00 3.85
3094 3348 5.286438 CGAATAGTATGGAATTGGACACGA 58.714 41.667 0.00 0.00 0.00 4.35
3095 3349 4.084537 GCGAATAGTATGGAATTGGACACG 60.085 45.833 0.00 0.00 0.00 4.49
3096 3350 4.084537 CGCGAATAGTATGGAATTGGACAC 60.085 45.833 0.00 0.00 0.00 3.67
3097 3351 4.055360 CGCGAATAGTATGGAATTGGACA 58.945 43.478 0.00 0.00 0.00 4.02
3102 3356 6.513180 TCTCTTTCGCGAATAGTATGGAATT 58.487 36.000 24.05 0.00 0.00 2.17
3110 3364 2.866762 GGCAATCTCTTTCGCGAATAGT 59.133 45.455 24.05 10.75 0.00 2.12
3114 3368 1.078709 CAGGCAATCTCTTTCGCGAA 58.921 50.000 19.38 19.38 0.00 4.70
3115 3369 0.246360 TCAGGCAATCTCTTTCGCGA 59.754 50.000 3.71 3.71 0.00 5.87
3261 3517 4.830826 GTGGAGAACACTTTACTTTGGG 57.169 45.455 0.00 0.00 46.72 4.12
3296 3554 5.995897 CAGTACTAGCTACAAACCCAAAGTT 59.004 40.000 0.00 0.00 41.81 2.66
3318 3576 2.355756 AGCAGCACACAACAAAGTACAG 59.644 45.455 0.00 0.00 0.00 2.74
3319 3577 2.364632 AGCAGCACACAACAAAGTACA 58.635 42.857 0.00 0.00 0.00 2.90
3557 3823 7.007723 AGAATTAAACATAGGGGTGACAAACA 58.992 34.615 0.00 0.00 0.00 2.83
3606 3872 1.326245 GTTTCTTGGCGTTTTTGGTGC 59.674 47.619 0.00 0.00 0.00 5.01
3617 3883 5.731686 GCTGCATATAGTGAAGTTTCTTGGC 60.732 44.000 0.00 0.00 35.72 4.52
3731 3997 6.151144 AGTGTATCCATTTCCTTTTCTTTCCG 59.849 38.462 0.00 0.00 0.00 4.30
3867 4138 2.483014 TCCCTTGTTTGATGGTACCG 57.517 50.000 7.57 0.00 0.00 4.02
3914 4185 3.560636 ATCTAAGAAACCATGGACCCG 57.439 47.619 21.47 0.00 0.00 5.28
3977 4250 7.831690 TGTTCAACTATTCCTTATGTTATGCCA 59.168 33.333 0.00 0.00 0.00 4.92
3987 4260 8.492673 CAGTTATGCTGTTCAACTATTCCTTA 57.507 34.615 0.00 0.00 40.27 2.69
4086 4372 1.826385 ATTCTAGTTGTGGCCACTGC 58.174 50.000 34.75 25.81 0.00 4.40
4119 4405 3.131755 GCTGCCAAGCTTTCATATCCTTT 59.868 43.478 0.00 0.00 46.60 3.11
4196 4483 9.483489 TTTACAGAGGGAGTACATATTAGACAA 57.517 33.333 0.00 0.00 0.00 3.18
4206 4493 9.624373 CTTATAGTAGTTTACAGAGGGAGTACA 57.376 37.037 0.00 0.00 0.00 2.90
4207 4494 9.844257 TCTTATAGTAGTTTACAGAGGGAGTAC 57.156 37.037 0.00 0.00 0.00 2.73
4209 4496 7.503230 GCTCTTATAGTAGTTTACAGAGGGAGT 59.497 40.741 0.00 0.00 0.00 3.85
4222 4509 8.680039 AGTGATCTAAACGCTCTTATAGTAGT 57.320 34.615 0.00 0.00 0.00 2.73
4225 4512 9.953697 CTTTAGTGATCTAAACGCTCTTATAGT 57.046 33.333 0.00 0.00 40.05 2.12
4226 4513 9.953697 ACTTTAGTGATCTAAACGCTCTTATAG 57.046 33.333 0.00 0.00 40.05 1.31
4228 4515 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
4230 4517 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
4231 4518 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
4232 4519 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
4233 4520 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
4241 4528 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
4242 4529 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
4243 4530 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
4244 4531 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
4258 4545 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4259 4546 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4260 4547 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4261 4548 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4262 4549 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4263 4550 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4264 4551 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4265 4552 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4266 4553 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4268 4555 8.518702 GGTACTCCCTCCGTAAACTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
4270 4557 7.526041 TGGTACTCCCTCCGTAAACTAATATA 58.474 38.462 0.00 0.00 0.00 0.86
4271 4558 6.376248 TGGTACTCCCTCCGTAAACTAATAT 58.624 40.000 0.00 0.00 0.00 1.28
4272 4559 5.765510 TGGTACTCCCTCCGTAAACTAATA 58.234 41.667 0.00 0.00 0.00 0.98
4273 4560 4.613437 TGGTACTCCCTCCGTAAACTAAT 58.387 43.478 0.00 0.00 0.00 1.73
4274 4561 4.046286 TGGTACTCCCTCCGTAAACTAA 57.954 45.455 0.00 0.00 0.00 2.24
4275 4562 3.737559 TGGTACTCCCTCCGTAAACTA 57.262 47.619 0.00 0.00 0.00 2.24
4276 4563 2.564504 GTTGGTACTCCCTCCGTAAACT 59.435 50.000 0.00 0.00 0.00 2.66
4277 4564 2.354103 GGTTGGTACTCCCTCCGTAAAC 60.354 54.545 0.00 0.00 0.00 2.01
4278 4565 1.901833 GGTTGGTACTCCCTCCGTAAA 59.098 52.381 0.00 0.00 0.00 2.01
4279 4566 1.077663 AGGTTGGTACTCCCTCCGTAA 59.922 52.381 0.00 0.00 34.57 3.18
4293 4588 5.377478 GGACAAGATCCCTATTTAGGTTGG 58.623 45.833 3.05 0.00 42.46 3.77
4307 4602 8.064336 ACCGGTATGTATAATAGGACAAGATC 57.936 38.462 4.49 0.00 0.00 2.75
4308 4603 8.311836 CAACCGGTATGTATAATAGGACAAGAT 58.688 37.037 8.00 0.00 0.00 2.40
4309 4604 7.288389 ACAACCGGTATGTATAATAGGACAAGA 59.712 37.037 8.00 0.00 0.00 3.02
4310 4605 7.384115 CACAACCGGTATGTATAATAGGACAAG 59.616 40.741 8.00 0.00 0.00 3.16
4311 4606 7.211573 CACAACCGGTATGTATAATAGGACAA 58.788 38.462 8.00 0.00 0.00 3.18
4312 4607 6.239373 CCACAACCGGTATGTATAATAGGACA 60.239 42.308 8.00 0.00 0.00 4.02
4313 4608 6.161381 CCACAACCGGTATGTATAATAGGAC 58.839 44.000 8.00 0.00 0.00 3.85
4314 4609 5.840149 ACCACAACCGGTATGTATAATAGGA 59.160 40.000 8.00 0.00 37.57 2.94
4315 4610 6.105397 ACCACAACCGGTATGTATAATAGG 57.895 41.667 8.00 12.68 37.57 2.57
4326 4621 4.354893 AAACTCAATACCACAACCGGTA 57.645 40.909 8.00 0.00 45.49 4.02
4327 4622 2.943036 AACTCAATACCACAACCGGT 57.057 45.000 0.00 0.00 43.46 5.28
4328 4623 4.577834 AAAAACTCAATACCACAACCGG 57.422 40.909 0.00 0.00 0.00 5.28
4371 4666 5.750547 TCTTAGATTCATTACAGCTCGCAAG 59.249 40.000 0.00 0.00 0.00 4.01
4372 4667 5.520288 GTCTTAGATTCATTACAGCTCGCAA 59.480 40.000 0.00 0.00 0.00 4.85
4373 4668 5.043903 GTCTTAGATTCATTACAGCTCGCA 58.956 41.667 0.00 0.00 0.00 5.10
4374 4669 5.285651 AGTCTTAGATTCATTACAGCTCGC 58.714 41.667 0.00 0.00 0.00 5.03
4375 4670 7.276658 ACAAAGTCTTAGATTCATTACAGCTCG 59.723 37.037 0.00 0.00 0.00 5.03
4376 4671 8.386606 CACAAAGTCTTAGATTCATTACAGCTC 58.613 37.037 0.00 0.00 0.00 4.09
4377 4672 7.148340 GCACAAAGTCTTAGATTCATTACAGCT 60.148 37.037 0.00 0.00 0.00 4.24
4378 4673 6.963805 GCACAAAGTCTTAGATTCATTACAGC 59.036 38.462 0.00 0.00 0.00 4.40
4379 4674 8.261492 AGCACAAAGTCTTAGATTCATTACAG 57.739 34.615 0.00 0.00 0.00 2.74
4380 4675 9.151471 GTAGCACAAAGTCTTAGATTCATTACA 57.849 33.333 0.00 0.00 0.00 2.41
4381 4676 9.372369 AGTAGCACAAAGTCTTAGATTCATTAC 57.628 33.333 0.00 0.00 0.00 1.89
4382 4677 9.944376 AAGTAGCACAAAGTCTTAGATTCATTA 57.056 29.630 0.00 0.00 0.00 1.90
4383 4678 8.854614 AAGTAGCACAAAGTCTTAGATTCATT 57.145 30.769 0.00 0.00 0.00 2.57
4384 4679 7.276658 CGAAGTAGCACAAAGTCTTAGATTCAT 59.723 37.037 0.00 0.00 0.00 2.57
4385 4680 6.586463 CGAAGTAGCACAAAGTCTTAGATTCA 59.414 38.462 0.00 0.00 0.00 2.57
4386 4681 6.807230 TCGAAGTAGCACAAAGTCTTAGATTC 59.193 38.462 0.00 0.00 0.00 2.52
4387 4682 6.688578 TCGAAGTAGCACAAAGTCTTAGATT 58.311 36.000 0.00 0.00 0.00 2.40
4388 4683 6.151312 TCTCGAAGTAGCACAAAGTCTTAGAT 59.849 38.462 0.00 0.00 0.00 1.98
4389 4684 5.472478 TCTCGAAGTAGCACAAAGTCTTAGA 59.528 40.000 0.00 0.00 0.00 2.10
4390 4685 5.569823 GTCTCGAAGTAGCACAAAGTCTTAG 59.430 44.000 0.00 0.00 0.00 2.18
4391 4686 5.241064 AGTCTCGAAGTAGCACAAAGTCTTA 59.759 40.000 0.00 0.00 0.00 2.10
4392 4687 4.038162 AGTCTCGAAGTAGCACAAAGTCTT 59.962 41.667 0.00 0.00 0.00 3.01
4393 4688 3.570550 AGTCTCGAAGTAGCACAAAGTCT 59.429 43.478 0.00 0.00 0.00 3.24
4394 4689 3.903360 AGTCTCGAAGTAGCACAAAGTC 58.097 45.455 0.00 0.00 0.00 3.01
4395 4690 4.323553 AAGTCTCGAAGTAGCACAAAGT 57.676 40.909 0.00 0.00 0.00 2.66
4396 4691 5.659048 AAAAGTCTCGAAGTAGCACAAAG 57.341 39.130 0.00 0.00 0.00 2.77
4397 4692 7.724305 ATTAAAAGTCTCGAAGTAGCACAAA 57.276 32.000 0.00 0.00 0.00 2.83
4398 4693 8.821147 TTATTAAAAGTCTCGAAGTAGCACAA 57.179 30.769 0.00 0.00 0.00 3.33
4399 4694 8.997621 ATTATTAAAAGTCTCGAAGTAGCACA 57.002 30.769 0.00 0.00 0.00 4.57
4405 4700 9.046296 CAGCCATATTATTAAAAGTCTCGAAGT 57.954 33.333 0.00 0.00 0.00 3.01
4406 4701 8.012241 GCAGCCATATTATTAAAAGTCTCGAAG 58.988 37.037 0.00 0.00 0.00 3.79
4407 4702 7.497579 TGCAGCCATATTATTAAAAGTCTCGAA 59.502 33.333 0.00 0.00 0.00 3.71
4408 4703 6.989759 TGCAGCCATATTATTAAAAGTCTCGA 59.010 34.615 0.00 0.00 0.00 4.04
4409 4704 7.189693 TGCAGCCATATTATTAAAAGTCTCG 57.810 36.000 0.00 0.00 0.00 4.04
4410 4705 7.540055 GCATGCAGCCATATTATTAAAAGTCTC 59.460 37.037 14.21 0.00 37.23 3.36
4411 4706 7.014518 TGCATGCAGCCATATTATTAAAAGTCT 59.985 33.333 18.46 0.00 44.83 3.24
4412 4707 7.147312 TGCATGCAGCCATATTATTAAAAGTC 58.853 34.615 18.46 0.00 44.83 3.01
4413 4708 7.053316 TGCATGCAGCCATATTATTAAAAGT 57.947 32.000 18.46 0.00 44.83 2.66
4414 4709 7.008901 CGATGCATGCAGCCATATTATTAAAAG 59.991 37.037 28.76 6.82 44.83 2.27
4415 4710 6.807720 CGATGCATGCAGCCATATTATTAAAA 59.192 34.615 28.76 0.00 44.83 1.52
4416 4711 6.072008 ACGATGCATGCAGCCATATTATTAAA 60.072 34.615 28.76 0.00 44.83 1.52
4417 4712 5.415389 ACGATGCATGCAGCCATATTATTAA 59.585 36.000 28.76 0.00 44.83 1.40
4418 4713 4.943093 ACGATGCATGCAGCCATATTATTA 59.057 37.500 28.76 0.00 44.83 0.98
4419 4714 3.760151 ACGATGCATGCAGCCATATTATT 59.240 39.130 28.76 6.59 44.83 1.40
4420 4715 3.349927 ACGATGCATGCAGCCATATTAT 58.650 40.909 28.76 7.39 44.83 1.28
4421 4716 2.781923 ACGATGCATGCAGCCATATTA 58.218 42.857 28.76 0.09 44.83 0.98
4422 4717 1.612676 ACGATGCATGCAGCCATATT 58.387 45.000 28.76 9.02 44.83 1.28
4423 4718 1.538512 GAACGATGCATGCAGCCATAT 59.461 47.619 28.76 13.14 44.83 1.78
4424 4719 0.946528 GAACGATGCATGCAGCCATA 59.053 50.000 28.76 2.58 44.83 2.74
4425 4720 1.033202 TGAACGATGCATGCAGCCAT 61.033 50.000 28.76 18.23 44.83 4.40
4426 4721 1.650314 CTGAACGATGCATGCAGCCA 61.650 55.000 28.76 19.68 44.83 4.75
4427 4722 1.063649 CTGAACGATGCATGCAGCC 59.936 57.895 28.76 19.54 44.83 4.85
4428 4723 0.661552 ATCTGAACGATGCATGCAGC 59.338 50.000 25.69 25.69 45.96 5.25
4429 4724 2.384899 CATCTGAACGATGCATGCAG 57.615 50.000 26.69 15.79 42.75 4.41
4437 4732 0.179062 GGCCTCTGCATCTGAACGAT 60.179 55.000 0.00 0.00 40.13 3.73
4438 4733 1.219124 GGCCTCTGCATCTGAACGA 59.781 57.895 0.00 0.00 40.13 3.85
4439 4734 2.169789 CGGCCTCTGCATCTGAACG 61.170 63.158 0.00 0.00 40.13 3.95
4440 4735 1.817099 CCGGCCTCTGCATCTGAAC 60.817 63.158 0.00 0.00 40.13 3.18
4441 4736 2.586245 CCGGCCTCTGCATCTGAA 59.414 61.111 0.00 0.00 40.13 3.02
4442 4737 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
4443 4738 3.790437 ACCCGGCCTCTGCATCTG 61.790 66.667 0.00 0.00 40.13 2.90
4444 4739 3.790437 CACCCGGCCTCTGCATCT 61.790 66.667 0.00 0.00 40.13 2.90
4455 4750 3.868200 AAAGGAGGCTTGCACCCGG 62.868 63.158 0.00 0.00 0.00 5.73
4456 4751 1.866853 GAAAAGGAGGCTTGCACCCG 61.867 60.000 0.00 0.00 0.00 5.28
4457 4752 1.536073 GGAAAAGGAGGCTTGCACCC 61.536 60.000 0.00 0.00 0.00 4.61
4458 4753 0.827507 TGGAAAAGGAGGCTTGCACC 60.828 55.000 0.00 0.00 0.00 5.01
4459 4754 1.039856 TTGGAAAAGGAGGCTTGCAC 58.960 50.000 0.00 0.00 0.00 4.57
4460 4755 1.786937 TTTGGAAAAGGAGGCTTGCA 58.213 45.000 0.00 0.00 0.00 4.08
4461 4756 2.908688 TTTTGGAAAAGGAGGCTTGC 57.091 45.000 0.00 0.00 0.00 4.01
4481 4776 4.261530 CGTATTTGGGTTGGTACGGTTTTT 60.262 41.667 0.00 0.00 37.02 1.94
4482 4777 3.252944 CGTATTTGGGTTGGTACGGTTTT 59.747 43.478 0.00 0.00 37.02 2.43
4483 4778 2.813172 CGTATTTGGGTTGGTACGGTTT 59.187 45.455 0.00 0.00 37.02 3.27
4484 4779 2.224499 ACGTATTTGGGTTGGTACGGTT 60.224 45.455 8.38 0.00 42.90 4.44
4485 4780 1.347378 ACGTATTTGGGTTGGTACGGT 59.653 47.619 8.38 0.00 42.90 4.83
4486 4781 2.097680 ACGTATTTGGGTTGGTACGG 57.902 50.000 8.38 0.00 42.90 4.02
4487 4782 3.848726 ACTACGTATTTGGGTTGGTACG 58.151 45.455 0.00 0.00 43.86 3.67
4506 4801 7.746703 AGAGGAAGGTGTAAAAGAACAATACT 58.253 34.615 0.00 0.00 0.00 2.12
4507 4802 7.119407 GGAGAGGAAGGTGTAAAAGAACAATAC 59.881 40.741 0.00 0.00 0.00 1.89
4508 4803 7.166167 GGAGAGGAAGGTGTAAAAGAACAATA 58.834 38.462 0.00 0.00 0.00 1.90
4509 4804 6.004574 GGAGAGGAAGGTGTAAAAGAACAAT 58.995 40.000 0.00 0.00 0.00 2.71
4555 4851 3.080319 GCTTCCAGTTTGCTCTGAGAAT 58.920 45.455 9.28 0.00 37.61 2.40
4607 4903 8.953223 ATATTTCTTTACGGAGGGAGTAGTAT 57.047 34.615 0.00 0.00 0.00 2.12
4636 5089 7.399523 CGTAAAGAAATATAAGAGCAAACGCT 58.600 34.615 0.00 0.00 44.39 5.07
4637 5090 6.627671 CCGTAAAGAAATATAAGAGCAAACGC 59.372 38.462 0.00 0.00 0.00 4.84
4638 5091 7.902032 TCCGTAAAGAAATATAAGAGCAAACG 58.098 34.615 0.00 0.00 0.00 3.60
4639 5092 8.336080 CCTCCGTAAAGAAATATAAGAGCAAAC 58.664 37.037 0.00 0.00 0.00 2.93
4643 5096 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4644 5097 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4645 5098 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4646 5099 9.075678 TCTACTCCCTCCGTAAAGAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
4647 5100 9.597681 ATCTACTCCCTCCGTAAAGAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
4649 5102 7.728981 TGATCTACTCCCTCCGTAAAGAAATAT 59.271 37.037 0.00 0.00 0.00 1.28
4650 5103 7.064866 TGATCTACTCCCTCCGTAAAGAAATA 58.935 38.462 0.00 0.00 0.00 1.40
4651 5104 5.897824 TGATCTACTCCCTCCGTAAAGAAAT 59.102 40.000 0.00 0.00 0.00 2.17
4652 5105 5.266788 TGATCTACTCCCTCCGTAAAGAAA 58.733 41.667 0.00 0.00 0.00 2.52
4653 5106 4.863548 TGATCTACTCCCTCCGTAAAGAA 58.136 43.478 0.00 0.00 0.00 2.52
4654 5107 4.515028 TGATCTACTCCCTCCGTAAAGA 57.485 45.455 0.00 0.00 0.00 2.52
4655 5108 6.239396 TCTATGATCTACTCCCTCCGTAAAG 58.761 44.000 0.00 0.00 0.00 1.85
4657 5110 5.837770 TCTATGATCTACTCCCTCCGTAA 57.162 43.478 0.00 0.00 0.00 3.18
4658 5111 5.487845 TCATCTATGATCTACTCCCTCCGTA 59.512 44.000 0.00 0.00 0.00 4.02
4660 5113 4.849518 TCATCTATGATCTACTCCCTCCG 58.150 47.826 0.00 0.00 0.00 4.63
4661 5114 5.826643 ACTCATCTATGATCTACTCCCTCC 58.173 45.833 0.00 0.00 36.02 4.30
4662 5115 6.599244 CAGACTCATCTATGATCTACTCCCTC 59.401 46.154 0.00 0.00 36.02 4.30
4663 5116 6.045459 ACAGACTCATCTATGATCTACTCCCT 59.955 42.308 0.00 0.00 36.02 4.20
4664 5117 6.245408 ACAGACTCATCTATGATCTACTCCC 58.755 44.000 0.00 0.00 36.02 4.30
4665 5118 7.880713 TGTACAGACTCATCTATGATCTACTCC 59.119 40.741 0.00 0.00 36.02 3.85
4666 5119 8.840833 TGTACAGACTCATCTATGATCTACTC 57.159 38.462 0.00 0.00 36.02 2.59
4667 5120 9.634021 TTTGTACAGACTCATCTATGATCTACT 57.366 33.333 0.00 0.00 36.02 2.57
4698 5168 5.138125 AGTGCAAAATCTGGTAATGTTGG 57.862 39.130 0.00 0.00 0.00 3.77
4699 5169 7.315142 ACATAGTGCAAAATCTGGTAATGTTG 58.685 34.615 0.00 0.00 0.00 3.33
4763 5334 0.179070 TGTGCACTGCGGTGTAGAAA 60.179 50.000 26.00 8.42 44.65 2.52
4779 5350 5.334260 GGCATTCAAAATGAAACACCATGTG 60.334 40.000 3.91 0.00 40.12 3.21
4802 5373 0.394899 GGGATTCAGGCAGGACTTGG 60.395 60.000 0.00 0.00 0.00 3.61
4981 5552 2.646930 CAGCATGTCATAGGAAGGCAA 58.353 47.619 0.00 0.00 0.00 4.52
5193 5764 1.164041 AACTGCCACCGACGAAAAGG 61.164 55.000 0.00 0.00 0.00 3.11
5225 5796 0.603707 ATTATCCCACGCATCCGCAG 60.604 55.000 0.00 0.00 38.40 5.18
5268 5839 4.498520 ATCTGCGCGGTCCTCACG 62.499 66.667 17.37 0.00 0.00 4.35
5335 5909 5.521010 ACGACAACGAACTGAAATTCTACAA 59.479 36.000 0.00 0.00 42.66 2.41
5337 5911 5.571778 ACGACAACGAACTGAAATTCTAC 57.428 39.130 0.00 0.00 42.66 2.59
5369 5958 0.605083 AGATCAACAGCAGCGTCAGA 59.395 50.000 0.00 0.00 0.00 3.27
5520 6109 1.678300 GAAGGAGACCGACGGACCT 60.678 63.158 23.38 21.18 0.00 3.85
5592 6185 7.178741 CGTGCGATACCTACTTATATACTGAC 58.821 42.308 0.00 0.00 0.00 3.51
5748 6355 1.094073 AGCTGAAGATCATGCCACGC 61.094 55.000 0.00 0.00 0.00 5.34
5858 6482 1.270839 TGCCAGCTCTCCACAGTAAAC 60.271 52.381 0.00 0.00 0.00 2.01
6015 6649 8.712285 AAAATGAATAAATGATGCACAAGAGG 57.288 30.769 0.00 0.00 0.00 3.69
6090 6725 2.423290 GATTCCCCGCGAGTCTAGCC 62.423 65.000 8.23 0.00 0.00 3.93
6092 6727 0.744874 TTGATTCCCCGCGAGTCTAG 59.255 55.000 8.23 0.00 0.00 2.43
6093 6728 0.744874 CTTGATTCCCCGCGAGTCTA 59.255 55.000 8.23 0.00 0.00 2.59
6095 6730 1.521681 CCTTGATTCCCCGCGAGTC 60.522 63.158 8.23 0.00 0.00 3.36
6096 6731 2.584608 CCTTGATTCCCCGCGAGT 59.415 61.111 8.23 0.00 0.00 4.18
6098 6733 4.483243 GGCCTTGATTCCCCGCGA 62.483 66.667 8.23 0.00 0.00 5.87
6099 6734 4.489771 AGGCCTTGATTCCCCGCG 62.490 66.667 0.00 0.00 0.00 6.46
6100 6735 2.265467 TACAGGCCTTGATTCCCCGC 62.265 60.000 0.00 0.00 0.00 6.13
6101 6736 0.474184 ATACAGGCCTTGATTCCCCG 59.526 55.000 0.00 0.00 0.00 5.73
6104 6739 0.947244 CGCATACAGGCCTTGATTCC 59.053 55.000 0.00 0.00 0.00 3.01
6175 6829 8.770010 TTTGGAACTTTCTTATGACCCTAAAA 57.230 30.769 0.00 0.00 0.00 1.52
6264 6936 7.612668 TTTTATGATTTCCCGAACATCGTTA 57.387 32.000 0.00 0.00 38.40 3.18
6267 6939 6.494842 ACATTTTATGATTTCCCGAACATCG 58.505 36.000 0.00 0.00 40.07 3.84
6290 6962 6.478344 TGCAAACATTTTGTGAATCCACTAAC 59.522 34.615 0.91 0.00 43.55 2.34
6293 6965 5.021033 TGCAAACATTTTGTGAATCCACT 57.979 34.783 0.91 0.00 43.55 4.00
6303 6975 8.339714 ACATCTTTTGAATCTGCAAACATTTTG 58.660 29.630 0.00 0.00 37.48 2.44
6316 7028 9.520204 TTCAAACTCTTGAACATCTTTTGAATC 57.480 29.630 0.00 0.00 44.76 2.52
6483 7195 9.474920 ACATTTGTTGAAATTCGTGAACATTAT 57.525 25.926 0.00 0.00 28.65 1.28
6484 7196 8.864069 ACATTTGTTGAAATTCGTGAACATTA 57.136 26.923 0.00 0.00 28.65 1.90
6485 7197 7.769272 ACATTTGTTGAAATTCGTGAACATT 57.231 28.000 0.00 0.00 28.65 2.71
6486 7198 7.042791 GGAACATTTGTTGAAATTCGTGAACAT 60.043 33.333 0.00 0.00 38.56 2.71
6487 7199 6.254589 GGAACATTTGTTGAAATTCGTGAACA 59.745 34.615 0.00 0.00 38.56 3.18
6488 7200 6.292114 GGGAACATTTGTTGAAATTCGTGAAC 60.292 38.462 0.00 0.00 38.56 3.18
6489 7201 5.751028 GGGAACATTTGTTGAAATTCGTGAA 59.249 36.000 0.00 0.00 38.56 3.18
6490 7202 5.163509 TGGGAACATTTGTTGAAATTCGTGA 60.164 36.000 0.00 0.00 38.56 4.35
6491 7203 5.046529 TGGGAACATTTGTTGAAATTCGTG 58.953 37.500 0.00 0.00 38.56 4.35
6492 7204 5.269505 TGGGAACATTTGTTGAAATTCGT 57.730 34.783 0.00 0.00 38.56 3.85
6493 7205 6.595772 TTTGGGAACATTTGTTGAAATTCG 57.404 33.333 0.00 0.00 42.32 3.34
6494 7206 9.449550 GAAATTTGGGAACATTTGTTGAAATTC 57.550 29.630 0.00 0.00 42.32 2.17
6495 7207 8.964772 TGAAATTTGGGAACATTTGTTGAAATT 58.035 25.926 0.00 6.24 42.32 1.82
6496 7208 8.517062 TGAAATTTGGGAACATTTGTTGAAAT 57.483 26.923 0.00 0.91 42.32 2.17
6497 7209 7.928307 TGAAATTTGGGAACATTTGTTGAAA 57.072 28.000 0.00 0.00 42.32 2.69
6498 7210 7.826252 TCTTGAAATTTGGGAACATTTGTTGAA 59.174 29.630 0.00 0.00 42.32 2.69
6499 7211 7.334090 TCTTGAAATTTGGGAACATTTGTTGA 58.666 30.769 0.00 0.00 42.32 3.18
6500 7212 7.551035 TCTTGAAATTTGGGAACATTTGTTG 57.449 32.000 0.00 0.00 42.32 3.33
6501 7213 8.572855 TTTCTTGAAATTTGGGAACATTTGTT 57.427 26.923 0.00 0.00 42.32 2.83
6502 7214 8.572855 TTTTCTTGAAATTTGGGAACATTTGT 57.427 26.923 0.00 0.00 42.32 2.83
6503 7215 8.676401 ACTTTTCTTGAAATTTGGGAACATTTG 58.324 29.630 0.00 0.00 42.32 2.32
6515 7227 7.414436 TGAATCGACGAACTTTTCTTGAAATT 58.586 30.769 0.00 0.00 0.00 1.82
6523 7235 5.963586 ACACTTTTGAATCGACGAACTTTTC 59.036 36.000 0.00 1.50 0.00 2.29
6532 7244 3.002246 TCAGTGCACACTTTTGAATCGAC 59.998 43.478 21.04 0.00 40.20 4.20
6544 7256 3.236816 CATTTTCCGAATCAGTGCACAC 58.763 45.455 21.04 3.93 0.00 3.82
6545 7257 2.884012 ACATTTTCCGAATCAGTGCACA 59.116 40.909 21.04 0.00 0.00 4.57
6546 7258 3.492313 GACATTTTCCGAATCAGTGCAC 58.508 45.455 9.40 9.40 0.00 4.57
6547 7259 2.487762 GGACATTTTCCGAATCAGTGCA 59.512 45.455 0.00 0.00 33.46 4.57
6548 7260 3.136808 GGACATTTTCCGAATCAGTGC 57.863 47.619 0.00 0.00 33.46 4.40
6558 7271 7.330208 CACTTTTCAGATTCATGGACATTTTCC 59.670 37.037 0.00 0.00 46.13 3.13
6575 7288 4.052608 TGCAATGCATGAACACTTTTCAG 58.947 39.130 2.72 0.00 31.71 3.02
6576 7289 4.056092 TGCAATGCATGAACACTTTTCA 57.944 36.364 2.72 0.00 31.71 2.69
6652 7406 2.399356 GCCTACGAGCTTGCCAACC 61.399 63.158 0.00 0.00 0.00 3.77
6671 7425 3.357079 GCCAACCACCACGAGCAG 61.357 66.667 0.00 0.00 0.00 4.24
6676 7430 2.906897 AGCTTGCCAACCACCACG 60.907 61.111 0.00 0.00 0.00 4.94
6695 7449 4.100479 TGGCACTTCCAATGGCAG 57.900 55.556 0.00 0.00 46.63 4.85
6707 7461 7.491682 ACCTTCATCAACATATATTTTGGCAC 58.508 34.615 10.88 0.00 0.00 5.01
6728 7482 3.118112 TCGTTCTCCTCGGTCTATACCTT 60.118 47.826 0.00 0.00 44.35 3.50
6740 7494 0.899019 AGCTCCCTTTCGTTCTCCTC 59.101 55.000 0.00 0.00 0.00 3.71
6750 7504 0.183492 TTGCACTGACAGCTCCCTTT 59.817 50.000 1.25 0.00 0.00 3.11
6751 7505 0.403271 ATTGCACTGACAGCTCCCTT 59.597 50.000 1.25 0.00 0.00 3.95
6756 7510 3.879912 GCAAATTGCACTGACAGCT 57.120 47.368 13.73 0.00 44.26 4.24
6758 7512 2.230508 ATCAGGCAAATTGCACTGACAG 59.769 45.455 28.26 0.00 45.92 3.51
6776 7530 3.261580 CAAGTATGTTCCACTCGCATCA 58.738 45.455 0.00 0.00 0.00 3.07
6784 7539 1.904287 TGCACCCAAGTATGTTCCAC 58.096 50.000 0.00 0.00 0.00 4.02
6808 7564 3.639094 GGCCTCAAGAGCTAGAGACATTA 59.361 47.826 10.88 0.00 33.74 1.90
6842 7598 7.109501 TCAAATAGGCTTAGTACAAGCAATGA 58.890 34.615 22.76 17.05 44.71 2.57
6856 7612 5.876357 TGTGTAAGACCTTCAAATAGGCTT 58.124 37.500 0.00 0.00 38.99 4.35
6862 7618 4.702131 GCTGGATGTGTAAGACCTTCAAAT 59.298 41.667 0.00 0.00 0.00 2.32
6884 7640 1.142474 GCAATGGCTTCAAGTGTTGC 58.858 50.000 7.47 7.47 36.96 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.