Multiple sequence alignment - TraesCS2D01G315100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G315100 chr2D 100.000 6600 0 0 1 6600 404404569 404397970 0.000000e+00 12189.0
1 TraesCS2D01G315100 chr2D 98.649 74 1 0 3753 3826 404400752 404400679 1.490000e-26 132.0
2 TraesCS2D01G315100 chr2D 98.649 74 1 0 3818 3891 404400817 404400744 1.490000e-26 132.0
3 TraesCS2D01G315100 chr2D 89.333 75 7 1 4739 4813 54877534 54877607 7.050000e-15 93.5
4 TraesCS2D01G315100 chr2B 92.208 3465 142 52 306 3701 478892033 478895438 0.000000e+00 4785.0
5 TraesCS2D01G315100 chr2B 89.793 1303 69 28 5154 6418 478896198 478897474 0.000000e+00 1611.0
6 TraesCS2D01G315100 chr2B 93.575 607 38 1 3948 4553 478895587 478896193 0.000000e+00 904.0
7 TraesCS2D01G315100 chr2B 85.106 141 9 6 6470 6598 478897497 478897637 4.150000e-27 134.0
8 TraesCS2D01G315100 chr2B 98.182 55 1 0 3700 3754 478895462 478895516 5.450000e-16 97.1
9 TraesCS2D01G315100 chr2A 90.489 3764 135 69 190 3826 542664033 542660366 0.000000e+00 4761.0
10 TraesCS2D01G315100 chr2A 93.939 1254 49 6 3818 5071 542660439 542659213 0.000000e+00 1869.0
11 TraesCS2D01G315100 chr2A 91.908 1211 45 18 5093 6276 542659223 542658039 0.000000e+00 1644.0
12 TraesCS2D01G315100 chr2A 93.333 90 5 1 4730 4819 523872475 523872563 1.490000e-26 132.0
13 TraesCS2D01G315100 chr2A 96.429 56 2 0 4730 4785 425906333 425906388 7.050000e-15 93.5
14 TraesCS2D01G315100 chr3B 93.750 96 6 0 4733 4828 254939088 254939183 1.920000e-30 145.0
15 TraesCS2D01G315100 chr6A 91.837 98 8 0 4730 4827 592810415 592810318 3.210000e-28 137.0
16 TraesCS2D01G315100 chr6D 90.000 90 6 1 4730 4819 446127375 446127461 5.410000e-21 113.0
17 TraesCS2D01G315100 chr7B 85.567 97 12 2 4730 4826 731440494 731440588 4.210000e-17 100.0
18 TraesCS2D01G315100 chr3D 86.905 84 10 1 4728 4810 611250525 611250442 7.050000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G315100 chr2D 404397970 404404569 6599 True 4151.00 12189 99.099333 1 6600 3 chr2D.!!$R1 6599
1 TraesCS2D01G315100 chr2B 478892033 478897637 5604 False 1506.22 4785 91.772800 306 6598 5 chr2B.!!$F1 6292
2 TraesCS2D01G315100 chr2A 542658039 542664033 5994 True 2758.00 4761 92.112000 190 6276 3 chr2A.!!$R1 6086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.107017 CTTGGGCGGAGACATGGATT 60.107 55.000 0.00 0.0 37.00 3.01 F
790 815 0.321122 AAAGCAACAGCTCTCCCTCG 60.321 55.000 0.00 0.0 37.72 4.63 F
1956 2099 0.108585 GTGGAGGTGAAGTTGGCAGA 59.891 55.000 0.00 0.0 0.00 4.26 F
3278 3435 0.865769 CTTTTAGTTGCGCACGAGGT 59.134 50.000 11.12 0.0 0.00 3.85 F
4639 4843 1.001974 CAACCTCACTTCCACATCGGA 59.998 52.381 0.00 0.0 44.40 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1316 0.031585 CCGGGCGAGATGAACGAATA 59.968 55.000 0.0 0.0 0.00 1.75 R
2242 2386 0.031585 TCGATTCATTAGTCCCCGCG 59.968 55.000 0.0 0.0 0.00 6.46 R
3853 4056 1.542472 CAGCTCAAATGGCATGTCACA 59.458 47.619 0.0 0.0 0.00 3.58 R
5085 5289 0.249398 CTTCACCCCTGAACTACGGG 59.751 60.000 0.0 0.0 44.27 5.28 R
5737 5951 0.108585 GCTCTTCAACACAGGTCCCA 59.891 55.000 0.0 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.024423 CATTGATTGCACGCACTGG 57.976 52.632 0.00 0.00 0.00 4.00
19 20 0.522626 CATTGATTGCACGCACTGGA 59.477 50.000 0.00 0.00 0.00 3.86
20 21 1.068402 CATTGATTGCACGCACTGGAA 60.068 47.619 0.00 0.00 34.23 3.53
21 22 0.592637 TTGATTGCACGCACTGGAAG 59.407 50.000 0.00 0.00 42.29 3.46
34 35 0.875059 CTGGAAGTGAAAGAACCGCC 59.125 55.000 0.00 0.00 0.00 6.13
35 36 0.536460 TGGAAGTGAAAGAACCGCCC 60.536 55.000 0.00 0.00 0.00 6.13
36 37 0.536460 GGAAGTGAAAGAACCGCCCA 60.536 55.000 0.00 0.00 0.00 5.36
37 38 1.534729 GAAGTGAAAGAACCGCCCAT 58.465 50.000 0.00 0.00 0.00 4.00
38 39 2.617021 GGAAGTGAAAGAACCGCCCATA 60.617 50.000 0.00 0.00 0.00 2.74
39 40 2.871096 AGTGAAAGAACCGCCCATAA 57.129 45.000 0.00 0.00 0.00 1.90
40 41 3.149005 AGTGAAAGAACCGCCCATAAA 57.851 42.857 0.00 0.00 0.00 1.40
41 42 3.492337 AGTGAAAGAACCGCCCATAAAA 58.508 40.909 0.00 0.00 0.00 1.52
42 43 4.086457 AGTGAAAGAACCGCCCATAAAAT 58.914 39.130 0.00 0.00 0.00 1.82
43 44 4.082245 AGTGAAAGAACCGCCCATAAAATG 60.082 41.667 0.00 0.00 0.00 2.32
55 56 4.741321 CCATAAAATGGCATGGACAGTT 57.259 40.909 0.00 0.00 43.80 3.16
56 57 5.850557 CCATAAAATGGCATGGACAGTTA 57.149 39.130 0.00 0.00 43.80 2.24
57 58 6.219417 CCATAAAATGGCATGGACAGTTAA 57.781 37.500 0.00 0.00 43.80 2.01
58 59 6.638610 CCATAAAATGGCATGGACAGTTAAA 58.361 36.000 0.00 0.00 43.80 1.52
59 60 6.757947 CCATAAAATGGCATGGACAGTTAAAG 59.242 38.462 0.00 0.00 43.80 1.85
60 61 4.806640 AAATGGCATGGACAGTTAAAGG 57.193 40.909 0.00 0.00 22.45 3.11
61 62 3.737559 ATGGCATGGACAGTTAAAGGA 57.262 42.857 0.00 0.00 0.00 3.36
62 63 2.790433 TGGCATGGACAGTTAAAGGAC 58.210 47.619 0.00 0.00 0.00 3.85
63 64 1.737793 GGCATGGACAGTTAAAGGACG 59.262 52.381 0.00 0.00 0.00 4.79
64 65 1.130561 GCATGGACAGTTAAAGGACGC 59.869 52.381 0.00 0.00 0.00 5.19
65 66 2.422597 CATGGACAGTTAAAGGACGCA 58.577 47.619 0.00 0.00 0.00 5.24
66 67 2.623878 TGGACAGTTAAAGGACGCAA 57.376 45.000 0.00 0.00 0.00 4.85
67 68 2.215196 TGGACAGTTAAAGGACGCAAC 58.785 47.619 0.00 0.00 0.00 4.17
68 69 2.215196 GGACAGTTAAAGGACGCAACA 58.785 47.619 0.00 0.00 0.00 3.33
69 70 2.614983 GGACAGTTAAAGGACGCAACAA 59.385 45.455 0.00 0.00 0.00 2.83
70 71 3.303791 GGACAGTTAAAGGACGCAACAAG 60.304 47.826 0.00 0.00 0.00 3.16
71 72 3.537580 ACAGTTAAAGGACGCAACAAGA 58.462 40.909 0.00 0.00 0.00 3.02
72 73 3.942748 ACAGTTAAAGGACGCAACAAGAA 59.057 39.130 0.00 0.00 0.00 2.52
73 74 4.578928 ACAGTTAAAGGACGCAACAAGAAT 59.421 37.500 0.00 0.00 0.00 2.40
74 75 4.911610 CAGTTAAAGGACGCAACAAGAATG 59.088 41.667 0.00 0.00 0.00 2.67
75 76 2.422276 AAAGGACGCAACAAGAATGC 57.578 45.000 0.00 0.00 40.41 3.56
76 77 0.598065 AAGGACGCAACAAGAATGCC 59.402 50.000 0.00 0.00 40.72 4.40
77 78 0.537143 AGGACGCAACAAGAATGCCA 60.537 50.000 0.00 0.00 40.72 4.92
78 79 0.527565 GGACGCAACAAGAATGCCAT 59.472 50.000 0.00 0.00 40.72 4.40
79 80 1.468054 GGACGCAACAAGAATGCCATC 60.468 52.381 0.00 0.00 40.72 3.51
80 81 1.199789 GACGCAACAAGAATGCCATCA 59.800 47.619 0.00 0.00 40.72 3.07
81 82 1.820519 ACGCAACAAGAATGCCATCAT 59.179 42.857 0.00 0.00 40.72 2.45
82 83 2.159338 ACGCAACAAGAATGCCATCATC 60.159 45.455 0.00 0.00 40.72 2.92
83 84 2.159352 CGCAACAAGAATGCCATCATCA 60.159 45.455 0.00 0.00 40.72 3.07
84 85 3.490249 CGCAACAAGAATGCCATCATCAT 60.490 43.478 0.00 0.00 40.72 2.45
85 86 4.439057 GCAACAAGAATGCCATCATCATT 58.561 39.130 0.00 0.00 37.85 2.57
86 87 4.873827 GCAACAAGAATGCCATCATCATTT 59.126 37.500 0.00 0.00 37.85 2.32
87 88 5.353123 GCAACAAGAATGCCATCATCATTTT 59.647 36.000 0.00 0.00 37.85 1.82
88 89 6.128117 GCAACAAGAATGCCATCATCATTTTT 60.128 34.615 0.00 0.00 37.85 1.94
89 90 6.978343 ACAAGAATGCCATCATCATTTTTG 57.022 33.333 13.74 13.74 44.62 2.44
90 91 6.703319 ACAAGAATGCCATCATCATTTTTGA 58.297 32.000 19.10 0.00 43.17 2.69
91 92 6.816640 ACAAGAATGCCATCATCATTTTTGAG 59.183 34.615 19.10 2.31 43.17 3.02
92 93 5.914033 AGAATGCCATCATCATTTTTGAGG 58.086 37.500 0.00 0.00 34.59 3.86
93 94 3.530265 TGCCATCATCATTTTTGAGGC 57.470 42.857 0.00 0.00 37.64 4.70
94 95 2.168936 TGCCATCATCATTTTTGAGGCC 59.831 45.455 0.00 0.00 36.97 5.19
95 96 2.433239 GCCATCATCATTTTTGAGGCCT 59.567 45.455 3.86 3.86 34.28 5.19
96 97 3.118519 GCCATCATCATTTTTGAGGCCTT 60.119 43.478 6.77 0.00 34.28 4.35
97 98 4.439057 CCATCATCATTTTTGAGGCCTTG 58.561 43.478 6.77 0.00 0.00 3.61
98 99 4.439057 CATCATCATTTTTGAGGCCTTGG 58.561 43.478 6.77 0.00 0.00 3.61
99 100 2.833338 TCATCATTTTTGAGGCCTTGGG 59.167 45.455 6.77 0.00 0.00 4.12
109 110 2.825836 GCCTTGGGCGGAGACATG 60.826 66.667 0.00 0.00 37.00 3.21
110 111 2.124570 CCTTGGGCGGAGACATGG 60.125 66.667 0.00 0.00 37.00 3.66
111 112 2.669133 CCTTGGGCGGAGACATGGA 61.669 63.158 0.00 0.00 37.00 3.41
112 113 1.528824 CTTGGGCGGAGACATGGAT 59.471 57.895 0.00 0.00 37.00 3.41
113 114 0.107017 CTTGGGCGGAGACATGGATT 60.107 55.000 0.00 0.00 37.00 3.01
114 115 0.331278 TTGGGCGGAGACATGGATTT 59.669 50.000 0.00 0.00 37.00 2.17
115 116 0.394216 TGGGCGGAGACATGGATTTG 60.394 55.000 0.00 0.00 37.00 2.32
116 117 1.728490 GGGCGGAGACATGGATTTGC 61.728 60.000 0.00 0.00 37.00 3.68
117 118 1.728490 GGCGGAGACATGGATTTGCC 61.728 60.000 0.00 0.84 31.66 4.52
129 130 4.139859 TGGATTTGCCATGCCTATTTTG 57.860 40.909 0.00 0.00 43.33 2.44
130 131 3.118334 TGGATTTGCCATGCCTATTTTGG 60.118 43.478 0.00 0.00 43.33 3.28
131 132 3.469739 GATTTGCCATGCCTATTTTGGG 58.530 45.455 0.00 0.00 0.00 4.12
132 133 2.244486 TTGCCATGCCTATTTTGGGA 57.756 45.000 0.00 0.00 0.00 4.37
133 134 2.475339 TGCCATGCCTATTTTGGGAT 57.525 45.000 0.00 0.00 38.75 3.85
138 139 4.579454 CATGCCTATTTTGGGATGTCTG 57.421 45.455 6.84 0.00 46.51 3.51
139 140 3.017048 TGCCTATTTTGGGATGTCTGG 57.983 47.619 0.00 0.00 0.00 3.86
140 141 2.580322 TGCCTATTTTGGGATGTCTGGA 59.420 45.455 0.00 0.00 0.00 3.86
141 142 3.205056 TGCCTATTTTGGGATGTCTGGAT 59.795 43.478 0.00 0.00 0.00 3.41
142 143 3.823304 GCCTATTTTGGGATGTCTGGATC 59.177 47.826 0.00 0.00 0.00 3.36
143 144 4.446889 GCCTATTTTGGGATGTCTGGATCT 60.447 45.833 0.00 0.00 0.00 2.75
144 145 5.699143 CCTATTTTGGGATGTCTGGATCTT 58.301 41.667 0.00 0.00 0.00 2.40
145 146 5.533903 CCTATTTTGGGATGTCTGGATCTTG 59.466 44.000 0.00 0.00 0.00 3.02
146 147 2.425143 TTGGGATGTCTGGATCTTGC 57.575 50.000 0.00 0.00 0.00 4.01
147 148 1.288188 TGGGATGTCTGGATCTTGCA 58.712 50.000 0.00 0.00 0.00 4.08
148 149 1.634973 TGGGATGTCTGGATCTTGCAA 59.365 47.619 0.00 0.00 0.00 4.08
149 150 2.019984 GGGATGTCTGGATCTTGCAAC 58.980 52.381 0.00 0.00 0.00 4.17
150 151 2.019984 GGATGTCTGGATCTTGCAACC 58.980 52.381 0.00 0.00 0.00 3.77
151 152 2.618816 GGATGTCTGGATCTTGCAACCA 60.619 50.000 7.04 7.04 0.00 3.67
152 153 2.885135 TGTCTGGATCTTGCAACCAT 57.115 45.000 7.65 0.00 33.08 3.55
153 154 3.998913 TGTCTGGATCTTGCAACCATA 57.001 42.857 7.65 0.00 33.08 2.74
154 155 4.508551 TGTCTGGATCTTGCAACCATAT 57.491 40.909 7.65 0.00 33.08 1.78
155 156 4.454678 TGTCTGGATCTTGCAACCATATC 58.545 43.478 7.65 3.41 33.08 1.63
156 157 4.080413 TGTCTGGATCTTGCAACCATATCA 60.080 41.667 7.65 5.43 33.08 2.15
157 158 4.883585 GTCTGGATCTTGCAACCATATCAA 59.116 41.667 7.65 0.00 33.08 2.57
158 159 5.533903 GTCTGGATCTTGCAACCATATCAAT 59.466 40.000 7.65 0.00 33.08 2.57
159 160 5.533528 TCTGGATCTTGCAACCATATCAATG 59.466 40.000 7.65 0.00 33.08 2.82
160 161 5.202765 TGGATCTTGCAACCATATCAATGT 58.797 37.500 3.24 0.00 0.00 2.71
161 162 5.068067 TGGATCTTGCAACCATATCAATGTG 59.932 40.000 3.24 0.00 0.00 3.21
162 163 5.300034 GGATCTTGCAACCATATCAATGTGA 59.700 40.000 0.00 0.00 0.00 3.58
163 164 6.015688 GGATCTTGCAACCATATCAATGTGAT 60.016 38.462 0.00 0.00 40.72 3.06
164 165 6.139048 TCTTGCAACCATATCAATGTGATG 57.861 37.500 0.00 0.00 37.70 3.07
165 166 5.887035 TCTTGCAACCATATCAATGTGATGA 59.113 36.000 0.00 0.00 37.70 2.92
166 167 6.377712 TCTTGCAACCATATCAATGTGATGAA 59.622 34.615 0.00 0.00 37.70 2.57
167 168 5.893687 TGCAACCATATCAATGTGATGAAC 58.106 37.500 0.94 0.00 37.70 3.18
168 169 5.163530 TGCAACCATATCAATGTGATGAACC 60.164 40.000 0.94 0.00 37.70 3.62
169 170 5.513376 CAACCATATCAATGTGATGAACCG 58.487 41.667 0.94 0.00 37.70 4.44
170 171 5.034852 ACCATATCAATGTGATGAACCGA 57.965 39.130 0.94 0.00 37.70 4.69
171 172 5.624159 ACCATATCAATGTGATGAACCGAT 58.376 37.500 0.94 0.00 37.70 4.18
172 173 5.702670 ACCATATCAATGTGATGAACCGATC 59.297 40.000 0.94 0.00 37.70 3.69
173 174 5.702209 CCATATCAATGTGATGAACCGATCA 59.298 40.000 0.94 0.00 43.67 2.92
178 179 2.969628 GTGATGAACCGATCACCTCT 57.030 50.000 4.10 0.00 44.44 3.69
179 180 3.252974 GTGATGAACCGATCACCTCTT 57.747 47.619 4.10 0.00 44.44 2.85
180 181 3.600388 GTGATGAACCGATCACCTCTTT 58.400 45.455 4.10 0.00 44.44 2.52
181 182 4.003648 GTGATGAACCGATCACCTCTTTT 58.996 43.478 4.10 0.00 44.44 2.27
182 183 4.455877 GTGATGAACCGATCACCTCTTTTT 59.544 41.667 4.10 0.00 44.44 1.94
207 208 5.613358 AAAGTTAGCCAATGAGAAACTCG 57.387 39.130 0.00 0.00 32.35 4.18
211 212 0.874390 GCCAATGAGAAACTCGCACA 59.126 50.000 0.00 0.00 32.35 4.57
218 219 1.527311 GAGAAACTCGCACAGGTGAAC 59.473 52.381 3.10 0.00 32.14 3.18
221 222 2.038387 AACTCGCACAGGTGAACTTT 57.962 45.000 3.10 0.00 32.14 2.66
235 236 4.441356 GGTGAACTTTCAAGCAAATGGTCA 60.441 41.667 0.00 0.00 39.21 4.02
250 251 6.257630 GCAAATGGTCACACATACAAACTTTT 59.742 34.615 0.00 0.00 0.00 2.27
256 257 7.068839 TGGTCACACATACAAACTTTTGGTATT 59.931 33.333 6.65 0.00 42.34 1.89
258 259 9.389570 GTCACACATACAAACTTTTGGTATTAC 57.610 33.333 6.65 0.00 42.34 1.89
259 260 9.344772 TCACACATACAAACTTTTGGTATTACT 57.655 29.630 6.65 0.00 42.34 2.24
262 263 9.749490 CACATACAAACTTTTGGTATTACTACG 57.251 33.333 6.65 0.00 42.34 3.51
263 264 9.709495 ACATACAAACTTTTGGTATTACTACGA 57.291 29.630 6.65 0.00 42.34 3.43
265 266 7.662604 ACAAACTTTTGGTATTACTACGAGG 57.337 36.000 6.65 0.00 42.34 4.63
266 267 7.444299 ACAAACTTTTGGTATTACTACGAGGA 58.556 34.615 6.65 0.00 42.34 3.71
267 268 8.098912 ACAAACTTTTGGTATTACTACGAGGAT 58.901 33.333 6.65 0.00 42.34 3.24
268 269 8.388103 CAAACTTTTGGTATTACTACGAGGATG 58.612 37.037 0.00 0.00 34.59 3.51
269 270 6.579865 ACTTTTGGTATTACTACGAGGATGG 58.420 40.000 0.00 0.00 0.00 3.51
270 271 5.540400 TTTGGTATTACTACGAGGATGGG 57.460 43.478 0.00 0.00 0.00 4.00
271 272 4.458256 TGGTATTACTACGAGGATGGGA 57.542 45.455 0.00 0.00 0.00 4.37
272 273 5.006896 TGGTATTACTACGAGGATGGGAT 57.993 43.478 0.00 0.00 0.00 3.85
275 276 7.011994 TGGTATTACTACGAGGATGGGATTTA 58.988 38.462 0.00 0.00 0.00 1.40
279 280 5.730296 ACTACGAGGATGGGATTTATCTG 57.270 43.478 0.00 0.00 0.00 2.90
280 281 4.528596 ACTACGAGGATGGGATTTATCTGG 59.471 45.833 0.00 0.00 0.00 3.86
286 287 3.652869 GGATGGGATTTATCTGGAGTGGA 59.347 47.826 0.00 0.00 0.00 4.02
294 295 6.987404 GGATTTATCTGGAGTGGAGTACTTTC 59.013 42.308 0.00 0.00 40.53 2.62
295 296 5.934402 TTATCTGGAGTGGAGTACTTTCC 57.066 43.478 0.00 3.44 40.53 3.13
298 299 3.165875 CTGGAGTGGAGTACTTTCCTGA 58.834 50.000 0.00 0.00 40.53 3.86
299 300 3.578716 CTGGAGTGGAGTACTTTCCTGAA 59.421 47.826 0.00 0.00 40.53 3.02
300 301 3.578716 TGGAGTGGAGTACTTTCCTGAAG 59.421 47.826 0.00 0.00 40.53 3.02
301 302 3.591023 GAGTGGAGTACTTTCCTGAAGC 58.409 50.000 0.00 0.00 40.53 3.86
302 303 2.303311 AGTGGAGTACTTTCCTGAAGCC 59.697 50.000 0.00 0.00 39.04 4.35
303 304 2.038557 GTGGAGTACTTTCCTGAAGCCA 59.961 50.000 0.00 0.00 39.04 4.75
304 305 2.708861 TGGAGTACTTTCCTGAAGCCAA 59.291 45.455 0.00 0.00 39.04 4.52
316 317 2.733026 CTGAAGCCAAAAGCCAATTTCG 59.267 45.455 0.00 0.00 45.47 3.46
356 358 2.362077 CCACCTGTTGCTGCTACTTTTT 59.638 45.455 14.81 0.00 0.00 1.94
378 380 2.225382 TGTCGTCTTCCCCTATGTCA 57.775 50.000 0.00 0.00 0.00 3.58
379 381 2.747177 TGTCGTCTTCCCCTATGTCAT 58.253 47.619 0.00 0.00 0.00 3.06
380 382 2.430694 TGTCGTCTTCCCCTATGTCATG 59.569 50.000 0.00 0.00 0.00 3.07
381 383 2.431057 GTCGTCTTCCCCTATGTCATGT 59.569 50.000 0.00 0.00 0.00 3.21
382 384 2.693591 TCGTCTTCCCCTATGTCATGTC 59.306 50.000 0.00 0.00 0.00 3.06
390 392 2.483714 CCCTATGTCATGTCGACCCAAG 60.484 54.545 14.12 0.01 44.71 3.61
403 405 2.032550 CGACCCAAGCATGCATAGAAAG 59.967 50.000 21.98 4.03 0.00 2.62
507 513 5.448632 CGCCTTCTTCTCTTCTCTTCTCTAC 60.449 48.000 0.00 0.00 0.00 2.59
545 565 2.797515 GACCTCGTCGTGTGACAAG 58.202 57.895 0.00 0.00 45.80 3.16
567 587 3.391382 GACCCAGACCCAGACCCG 61.391 72.222 0.00 0.00 0.00 5.28
699 719 2.416244 TTTGCGCGTCGTCTTCCTCT 62.416 55.000 8.43 0.00 0.00 3.69
700 720 2.577378 GCGCGTCGTCTTCCTCTC 60.577 66.667 8.43 0.00 0.00 3.20
784 809 2.263741 CCCGCAAAGCAACAGCTCT 61.264 57.895 0.00 0.00 37.72 4.09
785 810 1.208614 CCGCAAAGCAACAGCTCTC 59.791 57.895 0.00 0.00 37.72 3.20
786 811 1.208614 CGCAAAGCAACAGCTCTCC 59.791 57.895 0.00 0.00 37.72 3.71
787 812 1.583477 GCAAAGCAACAGCTCTCCC 59.417 57.895 0.00 0.00 37.72 4.30
788 813 0.892814 GCAAAGCAACAGCTCTCCCT 60.893 55.000 0.00 0.00 37.72 4.20
789 814 1.163554 CAAAGCAACAGCTCTCCCTC 58.836 55.000 0.00 0.00 37.72 4.30
790 815 0.321122 AAAGCAACAGCTCTCCCTCG 60.321 55.000 0.00 0.00 37.72 4.63
791 816 2.794820 AAGCAACAGCTCTCCCTCGC 62.795 60.000 0.00 0.00 37.72 5.03
792 817 2.125350 CAACAGCTCTCCCTCGCC 60.125 66.667 0.00 0.00 0.00 5.54
793 818 2.284258 AACAGCTCTCCCTCGCCT 60.284 61.111 0.00 0.00 0.00 5.52
934 996 4.172772 CGCGCGTGCTCTCTCTCT 62.173 66.667 24.19 0.00 39.65 3.10
1228 1298 3.937062 CCGCATTCGCCGTAAGCC 61.937 66.667 0.00 0.00 38.78 4.35
1247 1317 2.124901 CCCGCCGCATTTCACCTA 60.125 61.111 0.00 0.00 0.00 3.08
1248 1318 1.525995 CCCGCCGCATTTCACCTAT 60.526 57.895 0.00 0.00 0.00 2.57
1250 1320 0.307760 CCGCCGCATTTCACCTATTC 59.692 55.000 0.00 0.00 0.00 1.75
1277 1358 3.606662 GCCCGGCGATCTGCTCTA 61.607 66.667 9.30 0.00 45.43 2.43
1279 1360 1.006805 CCCGGCGATCTGCTCTAAG 60.007 63.158 9.30 0.00 45.43 2.18
1285 1366 1.407258 GCGATCTGCTCTAAGAGGTGT 59.593 52.381 0.00 0.00 41.73 4.16
1286 1367 2.159170 GCGATCTGCTCTAAGAGGTGTT 60.159 50.000 0.00 0.00 41.73 3.32
1292 1393 3.740115 TGCTCTAAGAGGTGTTTGGTTC 58.260 45.455 0.00 0.00 0.00 3.62
1451 1552 1.214367 GCTTCGTCAAGACCGACAAA 58.786 50.000 0.00 0.00 35.54 2.83
1555 1681 6.599356 TTACTGCCATGTCTAGAAGTACAA 57.401 37.500 0.00 0.00 0.00 2.41
1634 1777 1.174783 CGCTCCTACAGTACCAGTGT 58.825 55.000 0.00 0.00 35.61 3.55
1831 1974 4.874396 CGGGGAGGAGTAAGATTTGTTTAC 59.126 45.833 0.00 0.00 0.00 2.01
1886 2029 7.042858 GCTCTATTCATGAATATATGTCGCTGG 60.043 40.741 24.77 11.67 33.29 4.85
1956 2099 0.108585 GTGGAGGTGAAGTTGGCAGA 59.891 55.000 0.00 0.00 0.00 4.26
1993 2136 1.462670 GAGCTGAGGTTTTGCTCTTCG 59.537 52.381 0.00 0.00 46.69 3.79
2099 2243 7.044181 TGATGACTTTGGAAAGATGTAGCTAG 58.956 38.462 6.13 0.00 39.31 3.42
2112 2256 3.926616 TGTAGCTAGGAAAGTGTTGCTC 58.073 45.455 0.00 0.00 36.68 4.26
2114 2258 4.770531 TGTAGCTAGGAAAGTGTTGCTCTA 59.229 41.667 0.00 0.00 36.68 2.43
2115 2259 5.422331 TGTAGCTAGGAAAGTGTTGCTCTAT 59.578 40.000 0.00 0.00 36.68 1.98
2333 2477 8.576442 CCCATATTTTGTGTACCTATGGAATTC 58.424 37.037 8.17 0.00 40.76 2.17
2470 2614 4.799564 TTTCCCTGAACCATAATTGTGC 57.200 40.909 0.00 0.00 0.00 4.57
2581 2725 6.579666 TTATGCCTATCAAGATCAATTGGC 57.420 37.500 15.98 15.98 42.04 4.52
2590 2734 2.843701 AGATCAATTGGCGATCAGGAC 58.156 47.619 5.42 0.00 41.49 3.85
2848 3004 5.768317 GCAGAAGCACAACCTGTAAAATTA 58.232 37.500 0.00 0.00 41.58 1.40
3004 3161 3.967401 TGATGTTTGTCAAGTGCACATG 58.033 40.909 21.04 18.28 0.00 3.21
3005 3162 3.380954 TGATGTTTGTCAAGTGCACATGT 59.619 39.130 21.04 0.00 0.00 3.21
3006 3163 4.578105 TGATGTTTGTCAAGTGCACATGTA 59.422 37.500 21.04 8.54 0.00 2.29
3007 3164 5.241285 TGATGTTTGTCAAGTGCACATGTAT 59.759 36.000 21.04 6.94 0.00 2.29
3008 3165 4.857799 TGTTTGTCAAGTGCACATGTATG 58.142 39.130 21.04 9.66 0.00 2.39
3009 3166 4.337836 TGTTTGTCAAGTGCACATGTATGT 59.662 37.500 21.04 0.00 42.84 2.29
3010 3167 4.747540 TTGTCAAGTGCACATGTATGTC 57.252 40.909 21.04 8.01 39.39 3.06
3011 3168 3.737850 TGTCAAGTGCACATGTATGTCA 58.262 40.909 21.04 10.32 39.39 3.58
3115 3272 2.548057 TGTGTGAAAAGTCGGCATTCTC 59.452 45.455 7.04 4.45 0.00 2.87
3116 3273 2.548057 GTGTGAAAAGTCGGCATTCTCA 59.452 45.455 7.04 6.67 0.00 3.27
3278 3435 0.865769 CTTTTAGTTGCGCACGAGGT 59.134 50.000 11.12 0.00 0.00 3.85
3499 3657 4.337145 ACATAATACCGCCAGAAAAACCA 58.663 39.130 0.00 0.00 0.00 3.67
3796 3999 5.591099 AGCTTTTTGGTAACTTGTGACATG 58.409 37.500 0.00 0.00 37.61 3.21
3826 4029 3.072184 AGCTGAAGATGTCACCTGAGTTT 59.928 43.478 0.00 0.00 31.13 2.66
3827 4030 4.284490 AGCTGAAGATGTCACCTGAGTTTA 59.716 41.667 0.00 0.00 31.13 2.01
3828 4031 4.629200 GCTGAAGATGTCACCTGAGTTTAG 59.371 45.833 0.00 0.00 31.13 1.85
3829 4032 4.569943 TGAAGATGTCACCTGAGTTTAGC 58.430 43.478 0.00 0.00 0.00 3.09
3830 4033 4.040339 TGAAGATGTCACCTGAGTTTAGCA 59.960 41.667 0.00 0.00 0.00 3.49
3831 4034 4.199432 AGATGTCACCTGAGTTTAGCAG 57.801 45.455 0.00 0.00 0.00 4.24
3832 4035 3.580458 AGATGTCACCTGAGTTTAGCAGT 59.420 43.478 0.00 0.00 0.00 4.40
3833 4036 3.111853 TGTCACCTGAGTTTAGCAGTG 57.888 47.619 0.00 0.00 0.00 3.66
3834 4037 2.224281 TGTCACCTGAGTTTAGCAGTGG 60.224 50.000 0.00 0.00 0.00 4.00
3835 4038 2.047061 TCACCTGAGTTTAGCAGTGGT 58.953 47.619 0.00 0.00 0.00 4.16
3836 4039 2.438021 TCACCTGAGTTTAGCAGTGGTT 59.562 45.455 0.00 0.00 0.00 3.67
3837 4040 3.118038 TCACCTGAGTTTAGCAGTGGTTT 60.118 43.478 0.00 0.00 0.00 3.27
3838 4041 4.101898 TCACCTGAGTTTAGCAGTGGTTTA 59.898 41.667 0.00 0.00 0.00 2.01
3839 4042 4.452455 CACCTGAGTTTAGCAGTGGTTTAG 59.548 45.833 0.00 0.00 0.00 1.85
3840 4043 3.437049 CCTGAGTTTAGCAGTGGTTTAGC 59.563 47.826 0.00 0.00 0.00 3.09
3841 4044 4.319177 CTGAGTTTAGCAGTGGTTTAGCT 58.681 43.478 0.00 0.00 42.14 3.32
3842 4045 4.714632 TGAGTTTAGCAGTGGTTTAGCTT 58.285 39.130 0.00 0.00 39.68 3.74
3843 4046 5.130350 TGAGTTTAGCAGTGGTTTAGCTTT 58.870 37.500 0.00 0.00 39.68 3.51
3844 4047 5.592688 TGAGTTTAGCAGTGGTTTAGCTTTT 59.407 36.000 0.00 0.00 39.68 2.27
3845 4048 6.096282 TGAGTTTAGCAGTGGTTTAGCTTTTT 59.904 34.615 0.00 0.00 39.68 1.94
3846 4049 6.273071 AGTTTAGCAGTGGTTTAGCTTTTTG 58.727 36.000 0.00 0.00 39.68 2.44
3847 4050 3.733443 AGCAGTGGTTTAGCTTTTTGG 57.267 42.857 0.00 0.00 34.37 3.28
3848 4051 3.031013 AGCAGTGGTTTAGCTTTTTGGT 58.969 40.909 0.00 0.00 34.37 3.67
3849 4052 4.211920 AGCAGTGGTTTAGCTTTTTGGTA 58.788 39.130 0.00 0.00 34.37 3.25
3850 4053 4.647399 AGCAGTGGTTTAGCTTTTTGGTAA 59.353 37.500 0.00 0.00 34.37 2.85
3851 4054 4.743151 GCAGTGGTTTAGCTTTTTGGTAAC 59.257 41.667 0.00 0.00 38.22 2.50
3852 4055 5.451381 GCAGTGGTTTAGCTTTTTGGTAACT 60.451 40.000 0.00 0.00 38.22 2.24
3853 4056 6.569780 CAGTGGTTTAGCTTTTTGGTAACTT 58.430 36.000 0.00 0.00 38.22 2.66
3854 4057 6.475402 CAGTGGTTTAGCTTTTTGGTAACTTG 59.525 38.462 0.00 0.00 38.22 3.16
3855 4058 6.153851 AGTGGTTTAGCTTTTTGGTAACTTGT 59.846 34.615 0.00 0.00 38.22 3.16
3856 4059 6.254804 GTGGTTTAGCTTTTTGGTAACTTGTG 59.745 38.462 0.00 0.00 38.22 3.33
3857 4060 6.153000 TGGTTTAGCTTTTTGGTAACTTGTGA 59.847 34.615 0.00 0.00 38.22 3.58
3858 4061 6.474427 GGTTTAGCTTTTTGGTAACTTGTGAC 59.526 38.462 0.00 0.00 38.22 3.67
3859 4062 6.761099 TTAGCTTTTTGGTAACTTGTGACA 57.239 33.333 0.00 0.00 34.17 3.58
3860 4063 5.852282 AGCTTTTTGGTAACTTGTGACAT 57.148 34.783 0.00 0.00 37.61 3.06
3861 4064 5.591099 AGCTTTTTGGTAACTTGTGACATG 58.409 37.500 0.00 0.00 37.61 3.21
3862 4065 4.209080 GCTTTTTGGTAACTTGTGACATGC 59.791 41.667 0.00 0.00 37.61 4.06
3863 4066 4.314740 TTTTGGTAACTTGTGACATGCC 57.685 40.909 0.00 0.00 37.61 4.40
3864 4067 2.647683 TGGTAACTTGTGACATGCCA 57.352 45.000 0.00 0.00 37.61 4.92
3865 4068 3.153369 TGGTAACTTGTGACATGCCAT 57.847 42.857 0.00 0.00 37.61 4.40
3866 4069 3.495331 TGGTAACTTGTGACATGCCATT 58.505 40.909 0.00 0.00 37.61 3.16
3867 4070 3.894427 TGGTAACTTGTGACATGCCATTT 59.106 39.130 0.00 0.00 37.61 2.32
3868 4071 4.236935 GGTAACTTGTGACATGCCATTTG 58.763 43.478 0.00 0.00 0.00 2.32
3869 4072 4.022416 GGTAACTTGTGACATGCCATTTGA 60.022 41.667 0.00 0.00 0.00 2.69
3870 4073 3.928727 ACTTGTGACATGCCATTTGAG 57.071 42.857 0.00 0.00 0.00 3.02
3871 4074 2.029649 ACTTGTGACATGCCATTTGAGC 60.030 45.455 0.00 0.00 0.00 4.26
3872 4075 1.913778 TGTGACATGCCATTTGAGCT 58.086 45.000 0.00 0.00 0.00 4.09
3873 4076 1.542472 TGTGACATGCCATTTGAGCTG 59.458 47.619 0.00 0.00 0.00 4.24
3874 4077 1.814394 GTGACATGCCATTTGAGCTGA 59.186 47.619 0.00 0.00 0.00 4.26
3875 4078 2.229543 GTGACATGCCATTTGAGCTGAA 59.770 45.455 0.00 0.00 0.00 3.02
3876 4079 2.490509 TGACATGCCATTTGAGCTGAAG 59.509 45.455 0.00 0.00 0.00 3.02
3877 4080 2.751259 GACATGCCATTTGAGCTGAAGA 59.249 45.455 0.00 0.00 0.00 2.87
3878 4081 3.362706 ACATGCCATTTGAGCTGAAGAT 58.637 40.909 0.00 0.00 0.00 2.40
3879 4082 3.130516 ACATGCCATTTGAGCTGAAGATG 59.869 43.478 0.00 0.00 0.00 2.90
3880 4083 2.799017 TGCCATTTGAGCTGAAGATGT 58.201 42.857 0.00 0.00 0.00 3.06
3881 4084 2.751259 TGCCATTTGAGCTGAAGATGTC 59.249 45.455 0.00 0.00 0.00 3.06
3882 4085 2.751259 GCCATTTGAGCTGAAGATGTCA 59.249 45.455 0.00 0.00 34.17 3.58
3883 4086 3.427233 GCCATTTGAGCTGAAGATGTCAC 60.427 47.826 0.00 0.00 31.13 3.67
3884 4087 3.754850 CCATTTGAGCTGAAGATGTCACA 59.245 43.478 0.00 0.00 31.13 3.58
3885 4088 4.398358 CCATTTGAGCTGAAGATGTCACAT 59.602 41.667 0.00 0.00 31.13 3.21
3886 4089 5.332707 CATTTGAGCTGAAGATGTCACATG 58.667 41.667 0.00 0.00 31.13 3.21
3887 4090 3.967332 TGAGCTGAAGATGTCACATGA 57.033 42.857 0.00 0.00 31.13 3.07
3888 4091 3.858247 TGAGCTGAAGATGTCACATGAG 58.142 45.455 0.00 0.00 31.13 2.90
3889 4092 3.260128 TGAGCTGAAGATGTCACATGAGT 59.740 43.478 0.00 0.00 31.13 3.41
3890 4093 4.252073 GAGCTGAAGATGTCACATGAGTT 58.748 43.478 0.00 0.00 31.13 3.01
3910 4113 7.220740 TGAGTTACACCTTGTCATATTCAACA 58.779 34.615 0.00 0.00 0.00 3.33
3980 4183 6.652481 CAGGTTCTGTTAGATTCTGTGACAAT 59.348 38.462 0.00 0.00 0.00 2.71
4215 4419 6.743172 GGCAATAAGTCTTCTTTCGACAATTC 59.257 38.462 0.00 0.00 35.36 2.17
4357 4561 5.699915 TGTGAAAACACCATATTTTGCCATG 59.300 36.000 0.00 0.00 29.44 3.66
4363 4567 1.603678 CCATATTTTGCCATGCGCCTC 60.604 52.381 4.18 0.00 36.24 4.70
4429 4633 1.475034 CCCCACCATAGTGTTCATCCG 60.475 57.143 0.00 0.00 42.88 4.18
4470 4674 6.494842 TCAAAAGAGAAAGAAATGTCAACCG 58.505 36.000 0.00 0.00 0.00 4.44
4477 4681 5.301805 AGAAAGAAATGTCAACCGTCCAATT 59.698 36.000 0.00 0.00 0.00 2.32
4638 4842 1.442769 CAACCTCACTTCCACATCGG 58.557 55.000 0.00 0.00 0.00 4.18
4639 4843 1.001974 CAACCTCACTTCCACATCGGA 59.998 52.381 0.00 0.00 44.40 4.55
4711 4915 2.435805 TCAACTAGCCATGGACAGGATC 59.564 50.000 18.40 0.00 0.00 3.36
4753 4957 6.051717 CCATGACTTGGTTTCGAGATCTTAT 58.948 40.000 0.00 0.00 40.99 1.73
4800 5004 3.312736 TTCTTTGGGACTGAAAGGCTT 57.687 42.857 0.00 0.00 46.21 4.35
4801 5005 3.312736 TCTTTGGGACTGAAAGGCTTT 57.687 42.857 13.25 13.25 46.21 3.51
4802 5006 2.958355 TCTTTGGGACTGAAAGGCTTTG 59.042 45.455 18.79 6.49 46.21 2.77
4803 5007 2.452600 TTGGGACTGAAAGGCTTTGT 57.547 45.000 18.79 10.06 46.21 2.83
4804 5008 2.452600 TGGGACTGAAAGGCTTTGTT 57.547 45.000 18.79 0.35 46.21 2.83
4805 5009 2.031120 TGGGACTGAAAGGCTTTGTTG 58.969 47.619 18.79 9.31 46.21 3.33
4806 5010 2.031870 GGGACTGAAAGGCTTTGTTGT 58.968 47.619 18.79 12.44 46.21 3.32
4807 5011 2.430694 GGGACTGAAAGGCTTTGTTGTT 59.569 45.455 18.79 0.00 46.21 2.83
4808 5012 3.447742 GGACTGAAAGGCTTTGTTGTTG 58.552 45.455 18.79 3.44 46.21 3.33
4809 5013 3.119137 GGACTGAAAGGCTTTGTTGTTGT 60.119 43.478 18.79 6.53 46.21 3.32
4810 5014 4.494484 GACTGAAAGGCTTTGTTGTTGTT 58.506 39.130 18.79 0.00 40.68 2.83
4811 5015 4.244862 ACTGAAAGGCTTTGTTGTTGTTG 58.755 39.130 18.79 0.00 39.30 3.33
4812 5016 4.244862 CTGAAAGGCTTTGTTGTTGTTGT 58.755 39.130 18.79 0.00 0.00 3.32
4813 5017 4.636249 TGAAAGGCTTTGTTGTTGTTGTT 58.364 34.783 18.79 0.00 0.00 2.83
4814 5018 4.450419 TGAAAGGCTTTGTTGTTGTTGTTG 59.550 37.500 18.79 0.00 0.00 3.33
4815 5019 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4816 5020 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4817 5021 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4829 5033 6.701841 TGTTGTTGTTGTTGTTGTTGTTGTAT 59.298 30.769 0.00 0.00 0.00 2.29
4859 5063 8.894768 TTTCTCTGGCTTCTAGAATTATAAGC 57.105 34.615 5.44 4.42 42.81 3.09
4892 5096 9.320295 TCTTTTGTGGAAGTTATTTTATCCCAT 57.680 29.630 0.00 0.00 0.00 4.00
4899 5103 7.676043 TGGAAGTTATTTTATCCCATTGGTTCA 59.324 33.333 1.20 0.00 0.00 3.18
4909 5113 3.888930 TCCCATTGGTTCAGTTTGTCTTC 59.111 43.478 1.20 0.00 0.00 2.87
4910 5114 3.636300 CCCATTGGTTCAGTTTGTCTTCA 59.364 43.478 1.20 0.00 0.00 3.02
4923 5127 6.020121 CAGTTTGTCTTCAATTGCTTGTTCTG 60.020 38.462 0.00 0.00 33.87 3.02
5039 5243 7.702348 GTGGATATTTCAATAGTTTGAGGTTGC 59.298 37.037 0.00 0.00 42.60 4.17
5044 5248 8.907222 ATTTCAATAGTTTGAGGTTGCAATTT 57.093 26.923 0.59 0.00 42.60 1.82
5047 5251 9.823647 TTCAATAGTTTGAGGTTGCAATTTAAA 57.176 25.926 0.59 1.14 42.60 1.52
5067 5271 2.606378 ACGGTTCTAGAGTTTCAGGGT 58.394 47.619 0.00 0.00 0.00 4.34
5071 5275 4.502604 CGGTTCTAGAGTTTCAGGGTTGAA 60.503 45.833 0.00 0.00 41.44 2.69
5096 5300 7.668525 AAAACTATCTTTTCCCGTAGTTCAG 57.331 36.000 0.00 0.00 36.62 3.02
5097 5301 5.340439 ACTATCTTTTCCCGTAGTTCAGG 57.660 43.478 0.00 0.00 0.00 3.86
5102 5306 4.123571 CCCGTAGTTCAGGGGTGA 57.876 61.111 0.00 0.00 45.85 4.02
5103 5307 2.368591 CCCGTAGTTCAGGGGTGAA 58.631 57.895 0.00 0.00 45.85 3.18
5104 5308 0.249398 CCCGTAGTTCAGGGGTGAAG 59.751 60.000 0.00 0.00 45.85 3.02
5111 5315 3.976015 AGTTCAGGGGTGAAGTGAAAAA 58.024 40.909 0.00 0.00 32.15 1.94
5118 5322 3.368948 GGGGTGAAGTGAAAAAGCAAACA 60.369 43.478 0.00 0.00 0.00 2.83
5146 5350 1.724582 AAGCAAAGCGCCTGTTTCGT 61.725 50.000 2.29 0.00 44.04 3.85
5149 5353 0.991770 CAAAGCGCCTGTTTCGTTCG 60.992 55.000 2.29 0.00 0.00 3.95
5152 5356 0.108992 AGCGCCTGTTTCGTTCGATA 60.109 50.000 2.29 0.00 0.00 2.92
5203 5407 2.528564 CCAGTTGGGTGTCATCCAAAT 58.471 47.619 19.36 15.70 44.76 2.32
5279 5483 4.079443 AGGCTAGACTCTGAGTATCCAGTT 60.079 45.833 10.86 0.00 35.71 3.16
5384 5588 0.032540 CAAAGCCAGGAAAGGTGTGC 59.967 55.000 0.00 0.00 0.00 4.57
5411 5615 2.618045 GGATGGTCCGTTCCTTTGTCAT 60.618 50.000 3.84 0.00 0.00 3.06
5478 5682 3.056322 ACGCGGTATTATATCTTCCACCC 60.056 47.826 12.47 0.00 0.00 4.61
5499 5703 4.564406 CCCTCTTGTGAGCTATTTGTCAGT 60.564 45.833 0.00 0.00 38.93 3.41
5511 5715 2.842208 TTGTCAGTTTGAAAGCCACG 57.158 45.000 0.00 0.00 0.00 4.94
5513 5717 1.668751 TGTCAGTTTGAAAGCCACGTC 59.331 47.619 0.00 0.00 0.00 4.34
5531 5735 6.346096 CCACGTCTGGAATAAATCTTCCTAA 58.654 40.000 4.63 0.00 44.27 2.69
5550 5754 0.539051 AACCTGCAGATTCCTCCTCG 59.461 55.000 17.39 0.00 0.00 4.63
5576 5780 0.603569 AGTGGGTCAAGCGAGTAGTG 59.396 55.000 0.00 0.00 0.00 2.74
5623 5828 3.432252 GCAACCATCTAACGATATTCCGG 59.568 47.826 0.00 0.00 0.00 5.14
5629 5834 5.047943 CCATCTAACGATATTCCGGAAGACT 60.048 44.000 23.47 8.61 30.93 3.24
5714 5928 5.954296 AAGATGAACAACTGGATTGACAG 57.046 39.130 0.00 0.00 41.23 3.51
5715 5929 4.330250 AGATGAACAACTGGATTGACAGG 58.670 43.478 0.00 0.00 42.75 4.00
5716 5930 2.862541 TGAACAACTGGATTGACAGGG 58.137 47.619 0.00 0.00 42.75 4.45
5717 5931 2.441375 TGAACAACTGGATTGACAGGGA 59.559 45.455 0.00 0.00 42.75 4.20
5718 5932 2.867109 ACAACTGGATTGACAGGGAG 57.133 50.000 0.00 0.00 42.75 4.30
5719 5933 1.352352 ACAACTGGATTGACAGGGAGG 59.648 52.381 0.00 0.00 42.75 4.30
5720 5934 0.995024 AACTGGATTGACAGGGAGGG 59.005 55.000 0.00 0.00 42.75 4.30
5721 5935 0.119155 ACTGGATTGACAGGGAGGGA 59.881 55.000 0.00 0.00 42.75 4.20
5722 5936 0.835941 CTGGATTGACAGGGAGGGAG 59.164 60.000 0.00 0.00 34.84 4.30
5723 5937 0.621571 TGGATTGACAGGGAGGGAGG 60.622 60.000 0.00 0.00 0.00 4.30
5724 5938 1.348775 GGATTGACAGGGAGGGAGGG 61.349 65.000 0.00 0.00 0.00 4.30
5725 5939 0.621862 GATTGACAGGGAGGGAGGGT 60.622 60.000 0.00 0.00 0.00 4.34
5726 5940 0.916358 ATTGACAGGGAGGGAGGGTG 60.916 60.000 0.00 0.00 0.00 4.61
5727 5941 2.689034 GACAGGGAGGGAGGGTGG 60.689 72.222 0.00 0.00 0.00 4.61
5728 5942 4.354943 ACAGGGAGGGAGGGTGGG 62.355 72.222 0.00 0.00 0.00 4.61
5729 5943 4.024984 CAGGGAGGGAGGGTGGGA 62.025 72.222 0.00 0.00 0.00 4.37
5737 5951 4.026357 GAGGGTGGGAGGGAGGGT 62.026 72.222 0.00 0.00 0.00 4.34
5936 6158 5.589050 TCGTATAGAAGTGTGACACATAGCT 59.411 40.000 18.95 11.18 36.74 3.32
6170 6406 2.929398 CGGCTGGCAAAATTTATGGTTC 59.071 45.455 1.08 0.00 0.00 3.62
6184 6423 9.606631 AAATTTATGGTTCTCACTGTCTAGATC 57.393 33.333 0.00 0.00 0.00 2.75
6208 6447 3.817647 GACAATATGGGCAAGAGGATGAC 59.182 47.826 0.00 0.00 0.00 3.06
6287 6526 2.028020 GCTGATAATTCCTCTACCCGGG 60.028 54.545 22.25 22.25 0.00 5.73
6288 6527 3.240302 CTGATAATTCCTCTACCCGGGT 58.760 50.000 32.66 32.66 0.00 5.28
6289 6528 3.236896 TGATAATTCCTCTACCCGGGTC 58.763 50.000 34.27 11.90 0.00 4.46
6290 6529 1.696063 TAATTCCTCTACCCGGGTCG 58.304 55.000 34.27 25.98 0.00 4.79
6291 6530 0.325016 AATTCCTCTACCCGGGTCGT 60.325 55.000 34.27 8.79 0.00 4.34
6292 6531 0.754587 ATTCCTCTACCCGGGTCGTC 60.755 60.000 34.27 0.00 0.00 4.20
6314 6553 2.675348 GGATTTGCTCAGCACTACAGTC 59.325 50.000 0.00 0.00 38.71 3.51
6317 6556 1.269958 TGCTCAGCACTACAGTCCAT 58.730 50.000 0.00 0.00 31.71 3.41
6318 6557 1.625315 TGCTCAGCACTACAGTCCATT 59.375 47.619 0.00 0.00 31.71 3.16
6338 6577 4.345859 TTCTGTGTTACACTTGTAGGGG 57.654 45.455 16.79 0.00 35.11 4.79
6353 6592 3.639094 TGTAGGGGTGTTTGAATTGGTTG 59.361 43.478 0.00 0.00 0.00 3.77
6371 6610 9.651913 AATTGGTTGTAATTTTTATGTGCCTAG 57.348 29.630 0.00 0.00 0.00 3.02
6410 6649 0.829182 CAAGCCCTTGGTGCCTCTTT 60.829 55.000 0.06 0.00 36.95 2.52
6449 6693 4.742167 CACTAGTGCTTCTATTCATGGACG 59.258 45.833 10.54 0.00 0.00 4.79
6450 6694 2.555199 AGTGCTTCTATTCATGGACGC 58.445 47.619 0.00 0.00 34.01 5.19
6451 6695 1.258982 GTGCTTCTATTCATGGACGCG 59.741 52.381 3.53 3.53 35.73 6.01
6452 6696 0.233332 GCTTCTATTCATGGACGCGC 59.767 55.000 5.73 0.00 0.00 6.86
6453 6697 1.858091 CTTCTATTCATGGACGCGCT 58.142 50.000 5.73 0.00 0.00 5.92
6454 6698 1.524355 CTTCTATTCATGGACGCGCTG 59.476 52.381 5.73 1.02 0.00 5.18
6455 6699 0.249447 TCTATTCATGGACGCGCTGG 60.249 55.000 5.73 0.00 0.00 4.85
6456 6700 1.224069 CTATTCATGGACGCGCTGGG 61.224 60.000 5.73 0.00 0.00 4.45
6457 6701 1.966901 TATTCATGGACGCGCTGGGT 61.967 55.000 5.73 0.00 0.00 4.51
6458 6702 1.966901 ATTCATGGACGCGCTGGGTA 61.967 55.000 5.73 0.00 0.00 3.69
6459 6703 1.966901 TTCATGGACGCGCTGGGTAT 61.967 55.000 5.73 0.00 0.00 2.73
6460 6704 2.108976 ATGGACGCGCTGGGTATG 59.891 61.111 5.73 0.00 0.00 2.39
6461 6705 4.830765 TGGACGCGCTGGGTATGC 62.831 66.667 5.73 0.00 0.00 3.14
6462 6706 4.830765 GGACGCGCTGGGTATGCA 62.831 66.667 5.73 0.00 0.00 3.96
6463 6707 3.564027 GACGCGCTGGGTATGCAC 61.564 66.667 5.73 0.00 0.00 4.57
6464 6708 4.082523 ACGCGCTGGGTATGCACT 62.083 61.111 5.73 0.00 0.00 4.40
6465 6709 2.819595 CGCGCTGGGTATGCACTT 60.820 61.111 5.56 0.00 0.00 3.16
6466 6710 2.398554 CGCGCTGGGTATGCACTTT 61.399 57.895 5.56 0.00 0.00 2.66
6467 6711 1.137404 GCGCTGGGTATGCACTTTG 59.863 57.895 0.00 0.00 0.00 2.77
6468 6712 1.802636 CGCTGGGTATGCACTTTGG 59.197 57.895 0.00 0.00 0.00 3.28
6479 6723 1.536766 TGCACTTTGGCTCAATCGAAG 59.463 47.619 0.00 0.00 34.04 3.79
6484 6728 3.119708 ACTTTGGCTCAATCGAAGCATTC 60.120 43.478 9.64 0.00 43.09 2.67
6500 6744 2.607771 GCATTCACCTGAAAACACGCAT 60.608 45.455 0.00 0.00 37.61 4.73
6510 6754 6.317642 ACCTGAAAACACGCATATGCTAAATA 59.682 34.615 24.56 3.83 39.32 1.40
6547 6802 2.356313 AACCGTCTCTGCACGCTG 60.356 61.111 0.00 0.00 38.52 5.18
6549 6804 4.056125 CCGTCTCTGCACGCTGGA 62.056 66.667 0.00 0.00 38.52 3.86
6550 6805 2.182791 CGTCTCTGCACGCTGGAT 59.817 61.111 0.00 0.00 31.96 3.41
6551 6806 1.875813 CGTCTCTGCACGCTGGATC 60.876 63.158 0.00 0.00 31.96 3.36
6593 6849 4.534103 AGGTTATCTTCAGTTCCTGCTCTT 59.466 41.667 0.00 0.00 0.00 2.85
6598 6854 0.392706 TCAGTTCCTGCTCTTTGCGA 59.607 50.000 0.00 0.00 46.63 5.10
6599 6855 1.002430 TCAGTTCCTGCTCTTTGCGAT 59.998 47.619 0.00 0.00 46.63 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.522626 TCCAGTGCGTGCAATCAATG 59.477 50.000 9.19 9.19 0.00 2.82
1 2 1.200716 CTTCCAGTGCGTGCAATCAAT 59.799 47.619 0.00 0.00 0.00 2.57
2 3 0.592637 CTTCCAGTGCGTGCAATCAA 59.407 50.000 0.00 0.00 0.00 2.57
3 4 0.534877 ACTTCCAGTGCGTGCAATCA 60.535 50.000 0.00 0.00 0.00 2.57
4 5 0.110056 CACTTCCAGTGCGTGCAATC 60.110 55.000 0.00 0.00 39.62 2.67
5 6 0.534877 TCACTTCCAGTGCGTGCAAT 60.535 50.000 0.00 0.00 45.54 3.56
6 7 0.746204 TTCACTTCCAGTGCGTGCAA 60.746 50.000 0.00 0.00 45.54 4.08
7 8 0.746204 TTTCACTTCCAGTGCGTGCA 60.746 50.000 0.00 0.00 45.54 4.57
8 9 0.040958 CTTTCACTTCCAGTGCGTGC 60.041 55.000 0.00 0.00 45.54 5.34
9 10 1.581934 TCTTTCACTTCCAGTGCGTG 58.418 50.000 0.00 0.00 45.54 5.34
10 11 1.940613 GTTCTTTCACTTCCAGTGCGT 59.059 47.619 0.00 0.00 45.54 5.24
11 12 1.264288 GGTTCTTTCACTTCCAGTGCG 59.736 52.381 0.00 0.00 45.54 5.34
12 13 1.264288 CGGTTCTTTCACTTCCAGTGC 59.736 52.381 0.00 0.00 45.54 4.40
14 15 1.594331 GCGGTTCTTTCACTTCCAGT 58.406 50.000 0.00 0.00 0.00 4.00
15 16 0.875059 GGCGGTTCTTTCACTTCCAG 59.125 55.000 0.00 0.00 0.00 3.86
16 17 0.536460 GGGCGGTTCTTTCACTTCCA 60.536 55.000 0.00 0.00 0.00 3.53
17 18 0.536460 TGGGCGGTTCTTTCACTTCC 60.536 55.000 0.00 0.00 0.00 3.46
18 19 1.534729 ATGGGCGGTTCTTTCACTTC 58.465 50.000 0.00 0.00 0.00 3.01
19 20 2.871096 TATGGGCGGTTCTTTCACTT 57.129 45.000 0.00 0.00 0.00 3.16
20 21 2.871096 TTATGGGCGGTTCTTTCACT 57.129 45.000 0.00 0.00 0.00 3.41
21 22 3.926821 TTTTATGGGCGGTTCTTTCAC 57.073 42.857 0.00 0.00 0.00 3.18
22 23 3.194542 CCATTTTATGGGCGGTTCTTTCA 59.805 43.478 0.00 0.00 46.86 2.69
23 24 3.780902 CCATTTTATGGGCGGTTCTTTC 58.219 45.455 0.00 0.00 46.86 2.62
24 25 3.885724 CCATTTTATGGGCGGTTCTTT 57.114 42.857 0.00 0.00 46.86 2.52
35 36 6.757947 CCTTTAACTGTCCATGCCATTTTATG 59.242 38.462 0.00 0.00 0.00 1.90
36 37 6.667414 TCCTTTAACTGTCCATGCCATTTTAT 59.333 34.615 0.00 0.00 0.00 1.40
37 38 6.013379 TCCTTTAACTGTCCATGCCATTTTA 58.987 36.000 0.00 0.00 0.00 1.52
38 39 4.837860 TCCTTTAACTGTCCATGCCATTTT 59.162 37.500 0.00 0.00 0.00 1.82
39 40 4.220602 GTCCTTTAACTGTCCATGCCATTT 59.779 41.667 0.00 0.00 0.00 2.32
40 41 3.763897 GTCCTTTAACTGTCCATGCCATT 59.236 43.478 0.00 0.00 0.00 3.16
41 42 3.356290 GTCCTTTAACTGTCCATGCCAT 58.644 45.455 0.00 0.00 0.00 4.40
42 43 2.790433 GTCCTTTAACTGTCCATGCCA 58.210 47.619 0.00 0.00 0.00 4.92
43 44 1.737793 CGTCCTTTAACTGTCCATGCC 59.262 52.381 0.00 0.00 0.00 4.40
44 45 1.130561 GCGTCCTTTAACTGTCCATGC 59.869 52.381 0.00 0.00 0.00 4.06
45 46 2.422597 TGCGTCCTTTAACTGTCCATG 58.577 47.619 0.00 0.00 0.00 3.66
46 47 2.812011 GTTGCGTCCTTTAACTGTCCAT 59.188 45.455 0.00 0.00 0.00 3.41
47 48 2.215196 GTTGCGTCCTTTAACTGTCCA 58.785 47.619 0.00 0.00 0.00 4.02
48 49 2.215196 TGTTGCGTCCTTTAACTGTCC 58.785 47.619 0.00 0.00 0.00 4.02
49 50 3.558418 TCTTGTTGCGTCCTTTAACTGTC 59.442 43.478 0.00 0.00 0.00 3.51
50 51 3.537580 TCTTGTTGCGTCCTTTAACTGT 58.462 40.909 0.00 0.00 0.00 3.55
51 52 4.545823 TTCTTGTTGCGTCCTTTAACTG 57.454 40.909 0.00 0.00 0.00 3.16
52 53 4.556699 GCATTCTTGTTGCGTCCTTTAACT 60.557 41.667 0.00 0.00 0.00 2.24
53 54 3.668656 GCATTCTTGTTGCGTCCTTTAAC 59.331 43.478 0.00 0.00 0.00 2.01
54 55 3.305064 GGCATTCTTGTTGCGTCCTTTAA 60.305 43.478 0.00 0.00 41.07 1.52
55 56 2.227865 GGCATTCTTGTTGCGTCCTTTA 59.772 45.455 0.00 0.00 41.07 1.85
56 57 1.000274 GGCATTCTTGTTGCGTCCTTT 60.000 47.619 0.00 0.00 41.07 3.11
57 58 0.598065 GGCATTCTTGTTGCGTCCTT 59.402 50.000 0.00 0.00 41.07 3.36
58 59 0.537143 TGGCATTCTTGTTGCGTCCT 60.537 50.000 0.00 0.00 41.07 3.85
59 60 0.527565 ATGGCATTCTTGTTGCGTCC 59.472 50.000 0.00 0.00 41.07 4.79
60 61 1.199789 TGATGGCATTCTTGTTGCGTC 59.800 47.619 0.00 0.00 41.07 5.19
61 62 1.246649 TGATGGCATTCTTGTTGCGT 58.753 45.000 0.00 0.00 41.07 5.24
62 63 2.159352 TGATGATGGCATTCTTGTTGCG 60.159 45.455 0.00 0.00 41.07 4.85
63 64 3.513680 TGATGATGGCATTCTTGTTGC 57.486 42.857 0.00 0.00 39.41 4.17
64 65 6.978343 AAAATGATGATGGCATTCTTGTTG 57.022 33.333 0.00 0.00 35.06 3.33
65 66 7.162761 TCAAAAATGATGATGGCATTCTTGTT 58.837 30.769 0.00 0.00 35.94 2.83
66 67 6.703319 TCAAAAATGATGATGGCATTCTTGT 58.297 32.000 0.00 0.00 35.94 3.16
67 68 6.257849 CCTCAAAAATGATGATGGCATTCTTG 59.742 38.462 0.00 0.00 35.86 3.02
68 69 6.346096 CCTCAAAAATGATGATGGCATTCTT 58.654 36.000 0.00 0.00 35.06 2.52
69 70 5.684030 GCCTCAAAAATGATGATGGCATTCT 60.684 40.000 0.00 0.00 39.16 2.40
70 71 4.510340 GCCTCAAAAATGATGATGGCATTC 59.490 41.667 0.00 0.00 39.16 2.67
71 72 4.448210 GCCTCAAAAATGATGATGGCATT 58.552 39.130 0.00 0.00 39.16 3.56
72 73 3.181458 GGCCTCAAAAATGATGATGGCAT 60.181 43.478 0.00 0.00 40.15 4.40
73 74 2.168936 GGCCTCAAAAATGATGATGGCA 59.831 45.455 0.00 0.00 40.15 4.92
74 75 2.433239 AGGCCTCAAAAATGATGATGGC 59.567 45.455 0.00 0.00 38.89 4.40
75 76 4.439057 CAAGGCCTCAAAAATGATGATGG 58.561 43.478 5.23 0.00 0.00 3.51
76 77 4.439057 CCAAGGCCTCAAAAATGATGATG 58.561 43.478 5.23 0.00 0.00 3.07
77 78 3.453353 CCCAAGGCCTCAAAAATGATGAT 59.547 43.478 5.23 0.00 0.00 2.45
78 79 2.833338 CCCAAGGCCTCAAAAATGATGA 59.167 45.455 5.23 0.00 0.00 2.92
79 80 2.678769 GCCCAAGGCCTCAAAAATGATG 60.679 50.000 5.23 0.00 44.06 3.07
80 81 1.556451 GCCCAAGGCCTCAAAAATGAT 59.444 47.619 5.23 0.00 44.06 2.45
81 82 0.975887 GCCCAAGGCCTCAAAAATGA 59.024 50.000 5.23 0.00 44.06 2.57
82 83 3.538379 GCCCAAGGCCTCAAAAATG 57.462 52.632 5.23 0.00 44.06 2.32
92 93 2.825836 CATGTCTCCGCCCAAGGC 60.826 66.667 0.00 0.00 46.75 4.35
93 94 1.987807 ATCCATGTCTCCGCCCAAGG 61.988 60.000 0.00 0.00 0.00 3.61
94 95 0.107017 AATCCATGTCTCCGCCCAAG 60.107 55.000 0.00 0.00 0.00 3.61
95 96 0.331278 AAATCCATGTCTCCGCCCAA 59.669 50.000 0.00 0.00 0.00 4.12
96 97 0.394216 CAAATCCATGTCTCCGCCCA 60.394 55.000 0.00 0.00 0.00 5.36
97 98 1.728490 GCAAATCCATGTCTCCGCCC 61.728 60.000 0.00 0.00 0.00 6.13
98 99 1.728490 GGCAAATCCATGTCTCCGCC 61.728 60.000 0.00 0.00 34.01 6.13
99 100 1.031571 TGGCAAATCCATGTCTCCGC 61.032 55.000 0.00 0.00 40.72 5.54
100 101 3.173540 TGGCAAATCCATGTCTCCG 57.826 52.632 0.00 0.00 40.72 4.63
109 110 3.469739 CCAAAATAGGCATGGCAAATCC 58.530 45.455 22.64 0.00 0.00 3.01
110 111 3.134442 TCCCAAAATAGGCATGGCAAATC 59.866 43.478 22.64 0.00 32.71 2.17
111 112 3.113824 TCCCAAAATAGGCATGGCAAAT 58.886 40.909 22.64 11.51 32.71 2.32
112 113 2.544721 TCCCAAAATAGGCATGGCAAA 58.455 42.857 22.64 9.48 32.71 3.68
113 114 2.244486 TCCCAAAATAGGCATGGCAA 57.756 45.000 22.64 0.00 32.71 4.52
114 115 2.040939 CATCCCAAAATAGGCATGGCA 58.959 47.619 22.64 7.94 32.71 4.92
115 116 2.036346 GACATCCCAAAATAGGCATGGC 59.964 50.000 12.14 12.14 32.71 4.40
116 117 3.319972 CAGACATCCCAAAATAGGCATGG 59.680 47.826 0.00 0.00 0.00 3.66
117 118 3.319972 CCAGACATCCCAAAATAGGCATG 59.680 47.826 0.00 0.00 0.00 4.06
118 119 3.205056 TCCAGACATCCCAAAATAGGCAT 59.795 43.478 0.00 0.00 0.00 4.40
119 120 2.580322 TCCAGACATCCCAAAATAGGCA 59.420 45.455 0.00 0.00 0.00 4.75
120 121 3.297134 TCCAGACATCCCAAAATAGGC 57.703 47.619 0.00 0.00 0.00 3.93
121 122 5.316158 AGATCCAGACATCCCAAAATAGG 57.684 43.478 0.00 0.00 0.00 2.57
122 123 5.009410 GCAAGATCCAGACATCCCAAAATAG 59.991 44.000 0.00 0.00 0.00 1.73
123 124 4.889409 GCAAGATCCAGACATCCCAAAATA 59.111 41.667 0.00 0.00 0.00 1.40
124 125 3.703052 GCAAGATCCAGACATCCCAAAAT 59.297 43.478 0.00 0.00 0.00 1.82
125 126 3.091545 GCAAGATCCAGACATCCCAAAA 58.908 45.455 0.00 0.00 0.00 2.44
126 127 2.041485 TGCAAGATCCAGACATCCCAAA 59.959 45.455 0.00 0.00 0.00 3.28
127 128 1.634973 TGCAAGATCCAGACATCCCAA 59.365 47.619 0.00 0.00 0.00 4.12
128 129 1.288188 TGCAAGATCCAGACATCCCA 58.712 50.000 0.00 0.00 0.00 4.37
129 130 2.019984 GTTGCAAGATCCAGACATCCC 58.980 52.381 0.00 0.00 0.00 3.85
130 131 2.019984 GGTTGCAAGATCCAGACATCC 58.980 52.381 0.00 0.00 0.00 3.51
131 132 2.715046 TGGTTGCAAGATCCAGACATC 58.285 47.619 0.00 0.00 0.00 3.06
132 133 2.885135 TGGTTGCAAGATCCAGACAT 57.115 45.000 0.00 0.00 0.00 3.06
133 134 2.885135 ATGGTTGCAAGATCCAGACA 57.115 45.000 12.30 0.00 34.62 3.41
134 135 4.454678 TGATATGGTTGCAAGATCCAGAC 58.545 43.478 12.30 7.22 34.62 3.51
135 136 4.776435 TGATATGGTTGCAAGATCCAGA 57.224 40.909 12.30 8.59 34.62 3.86
136 137 5.301045 ACATTGATATGGTTGCAAGATCCAG 59.699 40.000 12.30 1.09 36.01 3.86
137 138 5.068067 CACATTGATATGGTTGCAAGATCCA 59.932 40.000 9.48 9.48 36.01 3.41
138 139 5.300034 TCACATTGATATGGTTGCAAGATCC 59.700 40.000 0.00 0.00 36.01 3.36
139 140 6.381481 TCACATTGATATGGTTGCAAGATC 57.619 37.500 0.00 1.49 36.01 2.75
140 141 6.548251 TCATCACATTGATATGGTTGCAAGAT 59.452 34.615 0.00 0.00 34.28 2.40
141 142 5.887035 TCATCACATTGATATGGTTGCAAGA 59.113 36.000 0.00 0.00 34.28 3.02
142 143 6.139048 TCATCACATTGATATGGTTGCAAG 57.861 37.500 0.00 0.00 34.28 4.01
143 144 6.331845 GTTCATCACATTGATATGGTTGCAA 58.668 36.000 0.00 0.00 34.28 4.08
144 145 5.163530 GGTTCATCACATTGATATGGTTGCA 60.164 40.000 0.00 0.00 34.28 4.08
145 146 5.284079 GGTTCATCACATTGATATGGTTGC 58.716 41.667 0.00 0.00 34.28 4.17
146 147 5.296531 TCGGTTCATCACATTGATATGGTTG 59.703 40.000 0.00 0.00 34.28 3.77
147 148 5.436175 TCGGTTCATCACATTGATATGGTT 58.564 37.500 0.00 0.00 34.28 3.67
148 149 5.034852 TCGGTTCATCACATTGATATGGT 57.965 39.130 0.00 0.00 34.28 3.55
149 150 5.702209 TGATCGGTTCATCACATTGATATGG 59.298 40.000 0.00 0.00 34.28 2.74
150 151 6.790285 TGATCGGTTCATCACATTGATATG 57.210 37.500 0.00 0.00 34.28 1.78
160 161 3.981071 AAAGAGGTGATCGGTTCATCA 57.019 42.857 2.44 0.00 37.99 3.07
180 181 9.744468 GAGTTTCTCATTGGCTAACTTTAAAAA 57.256 29.630 0.00 0.00 0.00 1.94
181 182 8.073768 CGAGTTTCTCATTGGCTAACTTTAAAA 58.926 33.333 0.00 0.00 0.00 1.52
182 183 7.581476 CGAGTTTCTCATTGGCTAACTTTAAA 58.419 34.615 0.00 0.00 0.00 1.52
183 184 6.348213 GCGAGTTTCTCATTGGCTAACTTTAA 60.348 38.462 0.00 0.00 0.00 1.52
184 185 5.121768 GCGAGTTTCTCATTGGCTAACTTTA 59.878 40.000 0.00 0.00 0.00 1.85
185 186 4.083271 GCGAGTTTCTCATTGGCTAACTTT 60.083 41.667 0.00 0.00 0.00 2.66
186 187 3.437049 GCGAGTTTCTCATTGGCTAACTT 59.563 43.478 0.00 0.00 0.00 2.66
187 188 3.003480 GCGAGTTTCTCATTGGCTAACT 58.997 45.455 0.00 0.00 0.00 2.24
188 189 2.742053 TGCGAGTTTCTCATTGGCTAAC 59.258 45.455 0.00 0.00 0.00 2.34
197 198 0.750249 TCACCTGTGCGAGTTTCTCA 59.250 50.000 0.00 0.00 0.00 3.27
199 200 1.139058 AGTTCACCTGTGCGAGTTTCT 59.861 47.619 0.00 0.00 0.00 2.52
201 202 2.038387 AAGTTCACCTGTGCGAGTTT 57.962 45.000 0.00 0.00 0.00 2.66
207 208 1.405105 TGCTTGAAAGTTCACCTGTGC 59.595 47.619 0.00 0.00 36.83 4.57
211 212 3.706086 ACCATTTGCTTGAAAGTTCACCT 59.294 39.130 0.00 0.00 36.83 4.00
218 219 4.044336 TGTGTGACCATTTGCTTGAAAG 57.956 40.909 0.00 0.00 0.00 2.62
221 222 4.140536 TGTATGTGTGACCATTTGCTTGA 58.859 39.130 0.00 0.00 0.00 3.02
250 251 4.458256 TCCCATCCTCGTAGTAATACCA 57.542 45.455 0.00 0.00 0.00 3.25
256 257 5.715279 CCAGATAAATCCCATCCTCGTAGTA 59.285 44.000 0.00 0.00 0.00 1.82
258 259 4.772624 TCCAGATAAATCCCATCCTCGTAG 59.227 45.833 0.00 0.00 0.00 3.51
259 260 4.747583 TCCAGATAAATCCCATCCTCGTA 58.252 43.478 0.00 0.00 0.00 3.43
260 261 3.580458 CTCCAGATAAATCCCATCCTCGT 59.420 47.826 0.00 0.00 0.00 4.18
261 262 3.580458 ACTCCAGATAAATCCCATCCTCG 59.420 47.826 0.00 0.00 0.00 4.63
262 263 4.263243 CCACTCCAGATAAATCCCATCCTC 60.263 50.000 0.00 0.00 0.00 3.71
263 264 3.654806 CCACTCCAGATAAATCCCATCCT 59.345 47.826 0.00 0.00 0.00 3.24
264 265 3.652869 TCCACTCCAGATAAATCCCATCC 59.347 47.826 0.00 0.00 0.00 3.51
265 266 4.349342 ACTCCACTCCAGATAAATCCCATC 59.651 45.833 0.00 0.00 0.00 3.51
266 267 4.310740 ACTCCACTCCAGATAAATCCCAT 58.689 43.478 0.00 0.00 0.00 4.00
267 268 3.736094 ACTCCACTCCAGATAAATCCCA 58.264 45.455 0.00 0.00 0.00 4.37
268 269 4.902448 AGTACTCCACTCCAGATAAATCCC 59.098 45.833 0.00 0.00 28.33 3.85
269 270 6.487299 AAGTACTCCACTCCAGATAAATCC 57.513 41.667 0.00 0.00 36.04 3.01
270 271 6.987404 GGAAAGTACTCCACTCCAGATAAATC 59.013 42.308 0.00 0.00 36.04 2.17
271 272 6.674419 AGGAAAGTACTCCACTCCAGATAAAT 59.326 38.462 13.00 0.00 36.04 1.40
272 273 6.023603 AGGAAAGTACTCCACTCCAGATAAA 58.976 40.000 13.00 0.00 36.04 1.40
275 276 3.772025 CAGGAAAGTACTCCACTCCAGAT 59.228 47.826 13.00 0.00 36.04 2.90
279 280 3.617775 GCTTCAGGAAAGTACTCCACTCC 60.618 52.174 0.00 0.46 36.04 3.85
280 281 3.591023 GCTTCAGGAAAGTACTCCACTC 58.409 50.000 0.00 0.00 36.04 3.51
286 287 3.570125 GCTTTTGGCTTCAGGAAAGTACT 59.430 43.478 0.00 0.00 37.31 2.73
294 295 2.845363 AATTGGCTTTTGGCTTCAGG 57.155 45.000 0.00 0.00 46.20 3.86
295 296 2.733026 CGAAATTGGCTTTTGGCTTCAG 59.267 45.455 0.00 0.00 46.20 3.02
298 299 3.467374 TTCGAAATTGGCTTTTGGCTT 57.533 38.095 0.00 0.00 46.20 4.35
299 300 3.467374 TTTCGAAATTGGCTTTTGGCT 57.533 38.095 6.47 0.00 46.20 4.75
300 301 5.812127 AGATATTTCGAAATTGGCTTTTGGC 59.188 36.000 27.10 6.40 46.23 4.52
301 302 7.035004 TGAGATATTTCGAAATTGGCTTTTGG 58.965 34.615 27.10 0.00 0.00 3.28
302 303 8.464770 TTGAGATATTTCGAAATTGGCTTTTG 57.535 30.769 27.10 0.00 0.00 2.44
303 304 7.761249 CCTTGAGATATTTCGAAATTGGCTTTT 59.239 33.333 27.10 5.20 0.00 2.27
304 305 7.260603 CCTTGAGATATTTCGAAATTGGCTTT 58.739 34.615 27.10 5.94 0.00 3.51
316 317 1.265365 GGCTGCGCCTTGAGATATTTC 59.735 52.381 4.18 0.00 46.69 2.17
356 358 2.693591 GACATAGGGGAAGACGACATGA 59.306 50.000 0.00 0.00 0.00 3.07
378 380 0.394762 ATGCATGCTTGGGTCGACAT 60.395 50.000 20.33 0.00 0.00 3.06
379 381 0.251634 TATGCATGCTTGGGTCGACA 59.748 50.000 20.33 0.00 0.00 4.35
380 382 0.940126 CTATGCATGCTTGGGTCGAC 59.060 55.000 20.33 7.13 0.00 4.20
381 383 0.829990 TCTATGCATGCTTGGGTCGA 59.170 50.000 20.33 3.02 0.00 4.20
382 384 1.667236 TTCTATGCATGCTTGGGTCG 58.333 50.000 20.33 0.59 0.00 4.79
390 392 2.880890 ACGATTCCCTTTCTATGCATGC 59.119 45.455 11.82 11.82 0.00 4.06
403 405 1.203052 TGGACTGTAACGACGATTCCC 59.797 52.381 0.00 0.00 0.00 3.97
516 536 0.320508 GACGAGGTCGGGCTTCTTTT 60.321 55.000 4.13 0.00 44.95 2.27
561 581 3.966543 CAAAGGTGGGCCGGGTCT 61.967 66.667 2.18 0.00 40.50 3.85
699 719 1.490490 GCTCCCAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 46.50 3.10
700 720 1.811558 CGCTCCCAGAGAGAGAGAGAG 60.812 61.905 0.00 0.00 46.50 3.20
933 995 4.906792 GCTAGCTGGCTGGGCGAG 62.907 72.222 15.78 0.00 37.44 5.03
981 1051 2.895680 GTCGCTCAGATCCCAGCA 59.104 61.111 12.71 0.00 35.15 4.41
1234 1304 2.675844 TGAACGAATAGGTGAAATGCGG 59.324 45.455 0.00 0.00 29.12 5.69
1236 1306 5.557136 CGAGATGAACGAATAGGTGAAATGC 60.557 44.000 0.00 0.00 0.00 3.56
1238 1308 4.508124 GCGAGATGAACGAATAGGTGAAAT 59.492 41.667 0.00 0.00 0.00 2.17
1239 1309 3.863424 GCGAGATGAACGAATAGGTGAAA 59.137 43.478 0.00 0.00 0.00 2.69
1240 1310 3.444916 GCGAGATGAACGAATAGGTGAA 58.555 45.455 0.00 0.00 0.00 3.18
1241 1311 2.223735 GGCGAGATGAACGAATAGGTGA 60.224 50.000 0.00 0.00 0.00 4.02
1243 1313 1.068741 GGGCGAGATGAACGAATAGGT 59.931 52.381 0.00 0.00 0.00 3.08
1244 1314 1.784525 GGGCGAGATGAACGAATAGG 58.215 55.000 0.00 0.00 0.00 2.57
1246 1316 0.031585 CCGGGCGAGATGAACGAATA 59.968 55.000 0.00 0.00 0.00 1.75
1247 1317 1.227263 CCGGGCGAGATGAACGAAT 60.227 57.895 0.00 0.00 0.00 3.34
1248 1318 2.183300 CCGGGCGAGATGAACGAA 59.817 61.111 0.00 0.00 0.00 3.85
1277 1358 3.117512 ACATCTGGAACCAAACACCTCTT 60.118 43.478 0.00 0.00 0.00 2.85
1279 1360 2.863809 ACATCTGGAACCAAACACCTC 58.136 47.619 0.00 0.00 0.00 3.85
1285 1366 2.139917 CGTCGAACATCTGGAACCAAA 58.860 47.619 0.00 0.00 0.00 3.28
1286 1367 1.606994 CCGTCGAACATCTGGAACCAA 60.607 52.381 0.00 0.00 0.00 3.67
1292 1393 2.100631 GTGGCCGTCGAACATCTGG 61.101 63.158 0.00 0.00 0.00 3.86
1451 1552 4.982241 TTGACCTCTTGTCTGGAAATCT 57.018 40.909 0.00 0.00 44.75 2.40
1555 1681 0.250901 GATGACCACCCAAGCTGTGT 60.251 55.000 2.39 0.00 31.71 3.72
1634 1777 3.202151 AGGAGAGGACAAACAAGGTTCAA 59.798 43.478 0.00 0.00 0.00 2.69
1769 1912 5.348986 TGATCAGCCGACAAGTAGTAAATC 58.651 41.667 0.00 0.00 0.00 2.17
1839 1982 5.960113 AGCAACGGAATTAATGCATTTGTA 58.040 33.333 18.75 4.16 41.18 2.41
1886 2029 8.887036 AATGGAAACCAAAAAGTGATAAGAAC 57.113 30.769 0.00 0.00 36.95 3.01
1956 2099 5.815581 TCAGCTCCACCAACAATATTTAGT 58.184 37.500 0.00 0.00 0.00 2.24
1993 2136 3.978718 ACTTGAGCAGAAGCAAAAGAC 57.021 42.857 8.50 0.00 45.49 3.01
2099 2243 4.201724 CGCTAACATAGAGCAACACTTTCC 60.202 45.833 0.00 0.00 40.09 3.13
2112 2256 6.311445 ACAAGTCAAATCAGTCGCTAACATAG 59.689 38.462 0.00 0.00 0.00 2.23
2114 2258 4.997395 ACAAGTCAAATCAGTCGCTAACAT 59.003 37.500 0.00 0.00 0.00 2.71
2115 2259 4.377021 ACAAGTCAAATCAGTCGCTAACA 58.623 39.130 0.00 0.00 0.00 2.41
2242 2386 0.031585 TCGATTCATTAGTCCCCGCG 59.968 55.000 0.00 0.00 0.00 6.46
2447 2591 6.194235 AGCACAATTATGGTTCAGGGAAATA 58.806 36.000 0.00 0.00 0.00 1.40
2448 2592 5.025453 AGCACAATTATGGTTCAGGGAAAT 58.975 37.500 0.00 0.00 0.00 2.17
2581 2725 2.010145 ATTCACCAACGTCCTGATCG 57.990 50.000 0.00 0.00 0.00 3.69
2590 2734 6.194796 ACAGGAATGATAAATTCACCAACG 57.805 37.500 0.94 0.00 37.11 4.10
2991 3148 3.748048 ACTGACATACATGTGCACTTGAC 59.252 43.478 32.41 19.15 41.95 3.18
3004 3161 4.697514 AGATGTGCCACATACTGACATAC 58.302 43.478 10.93 0.00 39.27 2.39
3005 3162 5.362430 TGTAGATGTGCCACATACTGACATA 59.638 40.000 10.93 0.00 39.27 2.29
3006 3163 3.920231 AGATGTGCCACATACTGACAT 57.080 42.857 10.93 0.00 39.27 3.06
3007 3164 3.513515 TGTAGATGTGCCACATACTGACA 59.486 43.478 10.93 9.48 39.27 3.58
3008 3165 3.865745 GTGTAGATGTGCCACATACTGAC 59.134 47.826 10.93 7.06 39.27 3.51
3009 3166 3.513515 TGTGTAGATGTGCCACATACTGA 59.486 43.478 10.93 0.00 39.27 3.41
3010 3167 3.860641 TGTGTAGATGTGCCACATACTG 58.139 45.455 10.93 0.00 39.27 2.74
3011 3168 4.551702 TTGTGTAGATGTGCCACATACT 57.448 40.909 10.93 11.81 39.27 2.12
3499 3657 9.667107 TTCTTTCGAGAATGTATAGTGGATTTT 57.333 29.630 0.00 0.00 0.00 1.82
3796 3999 2.751259 TGACATCTTCAGCTCAAATGGC 59.249 45.455 0.00 0.00 0.00 4.40
3826 4029 4.211920 ACCAAAAAGCTAAACCACTGCTA 58.788 39.130 0.00 0.00 35.85 3.49
3827 4030 3.031013 ACCAAAAAGCTAAACCACTGCT 58.969 40.909 0.00 0.00 38.87 4.24
3828 4031 3.452755 ACCAAAAAGCTAAACCACTGC 57.547 42.857 0.00 0.00 0.00 4.40
3829 4032 6.144078 AGTTACCAAAAAGCTAAACCACTG 57.856 37.500 0.00 0.00 0.00 3.66
3830 4033 6.153851 ACAAGTTACCAAAAAGCTAAACCACT 59.846 34.615 0.00 0.00 0.00 4.00
3831 4034 6.254804 CACAAGTTACCAAAAAGCTAAACCAC 59.745 38.462 0.00 0.00 0.00 4.16
3832 4035 6.153000 TCACAAGTTACCAAAAAGCTAAACCA 59.847 34.615 0.00 0.00 0.00 3.67
3833 4036 6.474427 GTCACAAGTTACCAAAAAGCTAAACC 59.526 38.462 0.00 0.00 0.00 3.27
3834 4037 7.030768 TGTCACAAGTTACCAAAAAGCTAAAC 58.969 34.615 0.00 0.00 0.00 2.01
3835 4038 7.159322 TGTCACAAGTTACCAAAAAGCTAAA 57.841 32.000 0.00 0.00 0.00 1.85
3836 4039 6.761099 TGTCACAAGTTACCAAAAAGCTAA 57.239 33.333 0.00 0.00 0.00 3.09
3837 4040 6.734137 CATGTCACAAGTTACCAAAAAGCTA 58.266 36.000 0.00 0.00 0.00 3.32
3838 4041 5.591099 CATGTCACAAGTTACCAAAAAGCT 58.409 37.500 0.00 0.00 0.00 3.74
3839 4042 4.209080 GCATGTCACAAGTTACCAAAAAGC 59.791 41.667 0.00 0.00 0.00 3.51
3840 4043 4.744631 GGCATGTCACAAGTTACCAAAAAG 59.255 41.667 0.00 0.00 0.00 2.27
3841 4044 4.160439 TGGCATGTCACAAGTTACCAAAAA 59.840 37.500 0.00 0.00 0.00 1.94
3842 4045 3.701542 TGGCATGTCACAAGTTACCAAAA 59.298 39.130 0.00 0.00 0.00 2.44
3843 4046 3.291584 TGGCATGTCACAAGTTACCAAA 58.708 40.909 0.00 0.00 0.00 3.28
3844 4047 2.937519 TGGCATGTCACAAGTTACCAA 58.062 42.857 0.00 0.00 0.00 3.67
3845 4048 2.647683 TGGCATGTCACAAGTTACCA 57.352 45.000 0.00 0.00 0.00 3.25
3846 4049 4.022416 TCAAATGGCATGTCACAAGTTACC 60.022 41.667 0.00 0.00 0.00 2.85
3847 4050 5.119931 TCAAATGGCATGTCACAAGTTAC 57.880 39.130 0.00 0.00 0.00 2.50
3848 4051 4.321156 GCTCAAATGGCATGTCACAAGTTA 60.321 41.667 0.00 0.00 0.00 2.24
3849 4052 3.553508 GCTCAAATGGCATGTCACAAGTT 60.554 43.478 0.00 0.00 0.00 2.66
3850 4053 2.029649 GCTCAAATGGCATGTCACAAGT 60.030 45.455 0.00 0.00 0.00 3.16
3851 4054 2.230508 AGCTCAAATGGCATGTCACAAG 59.769 45.455 0.00 0.00 0.00 3.16
3852 4055 2.029739 CAGCTCAAATGGCATGTCACAA 60.030 45.455 0.00 0.00 0.00 3.33
3853 4056 1.542472 CAGCTCAAATGGCATGTCACA 59.458 47.619 0.00 0.00 0.00 3.58
3854 4057 1.814394 TCAGCTCAAATGGCATGTCAC 59.186 47.619 0.00 0.00 0.00 3.67
3855 4058 2.203470 TCAGCTCAAATGGCATGTCA 57.797 45.000 0.60 0.60 0.00 3.58
3856 4059 2.751259 TCTTCAGCTCAAATGGCATGTC 59.249 45.455 0.00 0.00 0.00 3.06
3857 4060 2.799017 TCTTCAGCTCAAATGGCATGT 58.201 42.857 0.00 0.00 0.00 3.21
3858 4061 3.130516 ACATCTTCAGCTCAAATGGCATG 59.869 43.478 0.00 0.00 0.00 4.06
3859 4062 3.362706 ACATCTTCAGCTCAAATGGCAT 58.637 40.909 0.00 0.00 0.00 4.40
3860 4063 2.751259 GACATCTTCAGCTCAAATGGCA 59.249 45.455 0.00 0.00 0.00 4.92
3861 4064 2.751259 TGACATCTTCAGCTCAAATGGC 59.249 45.455 0.00 0.00 0.00 4.40
3862 4065 3.754850 TGTGACATCTTCAGCTCAAATGG 59.245 43.478 0.00 0.00 33.71 3.16
3863 4066 5.123344 TCATGTGACATCTTCAGCTCAAATG 59.877 40.000 0.00 0.00 33.71 2.32
3864 4067 5.250982 TCATGTGACATCTTCAGCTCAAAT 58.749 37.500 0.00 0.00 33.71 2.32
3865 4068 4.644498 TCATGTGACATCTTCAGCTCAAA 58.356 39.130 0.00 0.00 33.71 2.69
3866 4069 4.251268 CTCATGTGACATCTTCAGCTCAA 58.749 43.478 0.00 0.00 33.71 3.02
3867 4070 3.260128 ACTCATGTGACATCTTCAGCTCA 59.740 43.478 0.00 0.00 33.71 4.26
3868 4071 3.859443 ACTCATGTGACATCTTCAGCTC 58.141 45.455 0.00 0.00 33.71 4.09
3869 4072 3.977134 ACTCATGTGACATCTTCAGCT 57.023 42.857 0.00 0.00 33.71 4.24
3870 4073 4.931601 TGTAACTCATGTGACATCTTCAGC 59.068 41.667 0.00 0.00 32.82 4.26
3871 4074 5.349817 GGTGTAACTCATGTGACATCTTCAG 59.650 44.000 0.00 0.00 39.54 3.02
3872 4075 5.012046 AGGTGTAACTCATGTGACATCTTCA 59.988 40.000 0.00 0.00 44.54 3.02
3873 4076 5.482908 AGGTGTAACTCATGTGACATCTTC 58.517 41.667 0.00 0.00 44.54 2.87
3874 4077 5.489792 AGGTGTAACTCATGTGACATCTT 57.510 39.130 0.00 0.00 44.54 2.40
3876 4079 4.997395 ACAAGGTGTAACTCATGTGACATC 59.003 41.667 0.00 0.00 39.54 3.06
3877 4080 4.973168 ACAAGGTGTAACTCATGTGACAT 58.027 39.130 0.94 0.00 39.54 3.06
3878 4081 4.141824 TGACAAGGTGTAACTCATGTGACA 60.142 41.667 0.94 0.00 35.28 3.58
3879 4082 4.377021 TGACAAGGTGTAACTCATGTGAC 58.623 43.478 0.94 0.00 36.74 3.67
3880 4083 4.681074 TGACAAGGTGTAACTCATGTGA 57.319 40.909 0.94 0.00 36.74 3.58
3881 4084 7.334171 TGAATATGACAAGGTGTAACTCATGTG 59.666 37.037 0.00 0.00 36.74 3.21
3882 4085 7.394016 TGAATATGACAAGGTGTAACTCATGT 58.606 34.615 0.00 0.00 36.74 3.21
3883 4086 7.848223 TGAATATGACAAGGTGTAACTCATG 57.152 36.000 0.00 0.00 36.74 3.07
3884 4087 7.882791 TGTTGAATATGACAAGGTGTAACTCAT 59.117 33.333 0.00 0.00 36.74 2.90
3885 4088 7.220740 TGTTGAATATGACAAGGTGTAACTCA 58.779 34.615 0.00 0.00 36.74 3.41
3886 4089 7.602644 TCTGTTGAATATGACAAGGTGTAACTC 59.397 37.037 0.00 0.00 36.74 3.01
3887 4090 7.450074 TCTGTTGAATATGACAAGGTGTAACT 58.550 34.615 0.00 0.00 36.74 2.24
3888 4091 7.667043 TCTGTTGAATATGACAAGGTGTAAC 57.333 36.000 0.00 0.00 0.00 2.50
3889 4092 8.154203 TCTTCTGTTGAATATGACAAGGTGTAA 58.846 33.333 0.00 0.00 0.00 2.41
3890 4093 7.676004 TCTTCTGTTGAATATGACAAGGTGTA 58.324 34.615 0.00 0.00 0.00 2.90
3910 4113 3.096092 CCTGCAGAGTAAGGTCTCTTCT 58.904 50.000 17.39 0.00 42.10 2.85
4011 4214 5.337410 CCATACCCAATGCTCAATCAAAACA 60.337 40.000 0.00 0.00 33.92 2.83
4012 4215 5.111293 CCATACCCAATGCTCAATCAAAAC 58.889 41.667 0.00 0.00 33.92 2.43
4110 4313 2.226330 GTACCCAATCACAGCAACACA 58.774 47.619 0.00 0.00 0.00 3.72
4159 4363 8.911965 TGATAAAATGTAATGCTAGCCAAATGA 58.088 29.630 13.29 0.00 0.00 2.57
4215 4419 9.530633 AAAAGAAGTATAGCGTCCTACAATAAG 57.469 33.333 0.00 0.00 0.00 1.73
4429 4633 7.759433 TCTCTTTTGATGTTTTTGTCAAGTTCC 59.241 33.333 0.00 0.00 35.91 3.62
4440 4644 9.874205 TGACATTTCTTTCTCTTTTGATGTTTT 57.126 25.926 0.00 0.00 0.00 2.43
4470 4674 6.431198 TTCGCCATAAGTTTAGAATTGGAC 57.569 37.500 0.00 0.00 0.00 4.02
4477 4681 6.228258 AGTGAACTTTCGCCATAAGTTTAGA 58.772 36.000 0.00 0.00 43.76 2.10
4711 4915 1.202371 TGGATAGCTAACTTCCACGCG 60.202 52.381 10.01 3.53 34.65 6.01
4795 4999 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4800 5004 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4801 5005 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4802 5006 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4803 5007 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4804 5008 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4805 5009 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4806 5010 7.715265 AATACAACAACAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
4807 5011 8.988064 ATAATACAACAACAACAACAACAACA 57.012 26.923 0.00 0.00 0.00 3.33
4816 5020 9.743057 CCAGAGAAAAATAATACAACAACAACA 57.257 29.630 0.00 0.00 0.00 3.33
4817 5021 8.699749 GCCAGAGAAAAATAATACAACAACAAC 58.300 33.333 0.00 0.00 0.00 3.32
4864 5068 9.990360 GGGATAAAATAACTTCCACAAAAGAAA 57.010 29.630 0.00 0.00 0.00 2.52
4865 5069 9.148879 TGGGATAAAATAACTTCCACAAAAGAA 57.851 29.630 0.00 0.00 0.00 2.52
4892 5096 5.105392 AGCAATTGAAGACAAACTGAACCAA 60.105 36.000 10.34 0.00 39.54 3.67
4899 5103 6.038356 CAGAACAAGCAATTGAAGACAAACT 58.962 36.000 10.34 0.00 39.54 2.66
4909 5113 4.836125 ACACTACCAGAACAAGCAATTG 57.164 40.909 0.00 0.00 0.00 2.32
4910 5114 5.127031 ACAAACACTACCAGAACAAGCAATT 59.873 36.000 0.00 0.00 0.00 2.32
4923 5127 2.546789 CCGTGGAGAAACAAACACTACC 59.453 50.000 0.00 0.00 0.00 3.18
4950 5154 1.968017 CGTCCAAGCACTGCCATGT 60.968 57.895 0.00 0.00 0.00 3.21
4980 5184 1.541588 GCTGGTTCCATGAGTGGTTTC 59.458 52.381 0.00 0.00 46.16 2.78
4985 5189 1.678123 CCTCAGCTGGTTCCATGAGTG 60.678 57.143 15.13 8.21 37.97 3.51
5039 5243 8.015658 CCTGAAACTCTAGAACCGTTTAAATTG 58.984 37.037 8.19 0.00 31.60 2.32
5044 5248 4.590222 ACCCTGAAACTCTAGAACCGTTTA 59.410 41.667 8.19 0.00 31.60 2.01
5047 5251 2.606378 ACCCTGAAACTCTAGAACCGT 58.394 47.619 0.00 0.00 0.00 4.83
5071 5275 8.095937 CTGAACTACGGGAAAAGATAGTTTTT 57.904 34.615 0.00 0.00 37.85 1.94
5085 5289 0.249398 CTTCACCCCTGAACTACGGG 59.751 60.000 0.00 0.00 44.27 5.28
5086 5290 0.974383 ACTTCACCCCTGAACTACGG 59.026 55.000 0.00 0.00 32.68 4.02
5087 5291 1.616865 TCACTTCACCCCTGAACTACG 59.383 52.381 0.00 0.00 32.68 3.51
5088 5292 3.764237 TTCACTTCACCCCTGAACTAC 57.236 47.619 0.00 0.00 32.68 2.73
5089 5293 4.781775 TTTTCACTTCACCCCTGAACTA 57.218 40.909 0.00 0.00 32.68 2.24
5090 5294 3.662759 TTTTCACTTCACCCCTGAACT 57.337 42.857 0.00 0.00 32.68 3.01
5091 5295 3.490933 GCTTTTTCACTTCACCCCTGAAC 60.491 47.826 0.00 0.00 32.68 3.18
5092 5296 2.693074 GCTTTTTCACTTCACCCCTGAA 59.307 45.455 0.00 0.00 35.04 3.02
5093 5297 2.306847 GCTTTTTCACTTCACCCCTGA 58.693 47.619 0.00 0.00 0.00 3.86
5094 5298 2.031120 TGCTTTTTCACTTCACCCCTG 58.969 47.619 0.00 0.00 0.00 4.45
5095 5299 2.452600 TGCTTTTTCACTTCACCCCT 57.547 45.000 0.00 0.00 0.00 4.79
5096 5300 3.194861 GTTTGCTTTTTCACTTCACCCC 58.805 45.455 0.00 0.00 0.00 4.95
5097 5301 3.855858 TGTTTGCTTTTTCACTTCACCC 58.144 40.909 0.00 0.00 0.00 4.61
5098 5302 5.671082 GCTTTGTTTGCTTTTTCACTTCACC 60.671 40.000 0.00 0.00 0.00 4.02
5099 5303 5.107143 TGCTTTGTTTGCTTTTTCACTTCAC 60.107 36.000 0.00 0.00 0.00 3.18
5100 5304 4.993584 TGCTTTGTTTGCTTTTTCACTTCA 59.006 33.333 0.00 0.00 0.00 3.02
5101 5305 5.348451 TCTGCTTTGTTTGCTTTTTCACTTC 59.652 36.000 0.00 0.00 0.00 3.01
5102 5306 5.237048 TCTGCTTTGTTTGCTTTTTCACTT 58.763 33.333 0.00 0.00 0.00 3.16
5103 5307 4.819769 TCTGCTTTGTTTGCTTTTTCACT 58.180 34.783 0.00 0.00 0.00 3.41
5104 5308 5.529014 TTCTGCTTTGTTTGCTTTTTCAC 57.471 34.783 0.00 0.00 0.00 3.18
5111 5315 3.249986 TGCTTTTCTGCTTTGTTTGCT 57.750 38.095 0.00 0.00 0.00 3.91
5118 5322 1.211743 GCGCTTTGCTTTTCTGCTTT 58.788 45.000 0.00 0.00 41.73 3.51
5146 5350 6.260050 GCTTCATAAGGTGTTTCCATATCGAA 59.740 38.462 0.00 0.00 39.02 3.71
5240 5444 1.822990 AGCCTGCATTCACCAGAAATG 59.177 47.619 0.00 0.00 37.29 2.32
5279 5483 6.801539 ACAAAGAGCTTGAACATATTTCGA 57.198 33.333 0.00 0.00 38.50 3.71
5384 5588 3.015145 AACGGACCATCCCAGGGG 61.015 66.667 5.33 0.92 31.13 4.79
5411 5615 4.278419 GCTTCTTTCTTTTCCTGGCAACTA 59.722 41.667 0.00 0.00 37.61 2.24
5478 5682 6.203530 TCAAACTGACAAATAGCTCACAAGAG 59.796 38.462 0.00 0.00 44.96 2.85
5499 5703 2.045561 TTCCAGACGTGGCTTTCAAA 57.954 45.000 0.00 0.00 44.60 2.69
5531 5735 0.539051 CGAGGAGGAATCTGCAGGTT 59.461 55.000 13.24 13.24 33.43 3.50
5550 5754 0.868406 CGCTTGACCCACTGTTTCTC 59.132 55.000 0.00 0.00 0.00 2.87
5576 5780 1.280421 AGATGACTCTTGCCCTTGGTC 59.720 52.381 0.00 0.00 0.00 4.02
5714 5928 4.825679 CCTCCCACCCTCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
5715 5929 4.825679 CCCTCCCACCCTCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
5716 5930 3.695825 TCCCTCCCACCCTCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
5717 5931 3.700350 CTCCCTCCCACCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
5718 5932 4.825679 CCTCCCTCCCACCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
5719 5933 4.825679 CCCTCCCTCCCACCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
5720 5934 4.026357 ACCCTCCCTCCCACCCTC 62.026 72.222 0.00 0.00 0.00 4.30
5721 5935 4.354943 CACCCTCCCTCCCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
5724 5938 4.348495 TCCCACCCTCCCTCCCAC 62.348 72.222 0.00 0.00 0.00 4.61
5725 5939 4.348495 GTCCCACCCTCCCTCCCA 62.348 72.222 0.00 0.00 0.00 4.37
5727 5941 4.026357 AGGTCCCACCCTCCCTCC 62.026 72.222 0.00 0.00 39.75 4.30
5728 5942 2.689034 CAGGTCCCACCCTCCCTC 60.689 72.222 0.00 0.00 39.75 4.30
5729 5943 3.542602 ACAGGTCCCACCCTCCCT 61.543 66.667 0.00 0.00 39.75 4.20
5737 5951 0.108585 GCTCTTCAACACAGGTCCCA 59.891 55.000 0.00 0.00 0.00 4.37
5936 6158 2.556189 ACTTGACAAATACAATGCCGCA 59.444 40.909 0.00 0.00 0.00 5.69
6170 6406 7.369607 CCATATTGTCAGATCTAGACAGTGAG 58.630 42.308 22.03 16.67 45.72 3.51
6184 6423 3.565764 TCCTCTTGCCCATATTGTCAG 57.434 47.619 0.00 0.00 0.00 3.51
6287 6526 1.014044 TGCTGAGCAAATCCGACGAC 61.014 55.000 3.81 0.00 34.76 4.34
6288 6527 1.014044 GTGCTGAGCAAATCCGACGA 61.014 55.000 9.51 0.00 41.47 4.20
6289 6528 1.016130 AGTGCTGAGCAAATCCGACG 61.016 55.000 9.51 0.00 41.47 5.12
6290 6529 1.661112 GTAGTGCTGAGCAAATCCGAC 59.339 52.381 9.51 0.00 41.47 4.79
6291 6530 1.275010 TGTAGTGCTGAGCAAATCCGA 59.725 47.619 9.51 0.00 41.47 4.55
6292 6531 1.662629 CTGTAGTGCTGAGCAAATCCG 59.337 52.381 9.51 0.00 41.47 4.18
6294 6533 2.675348 GGACTGTAGTGCTGAGCAAATC 59.325 50.000 9.51 2.74 41.47 2.17
6295 6534 2.038952 TGGACTGTAGTGCTGAGCAAAT 59.961 45.455 9.51 3.29 41.47 2.32
6296 6535 1.416030 TGGACTGTAGTGCTGAGCAAA 59.584 47.619 9.51 0.00 41.47 3.68
6314 6553 4.695455 CCCTACAAGTGTAACACAGAATGG 59.305 45.833 0.00 0.00 43.62 3.16
6317 6556 3.712733 ACCCCTACAAGTGTAACACAGAA 59.287 43.478 0.00 0.00 41.43 3.02
6318 6557 3.070446 CACCCCTACAAGTGTAACACAGA 59.930 47.826 0.00 0.00 41.43 3.41
6353 6592 4.577283 TCCCGCTAGGCACATAAAAATTAC 59.423 41.667 0.00 0.00 35.76 1.89
6366 6605 4.355925 CGGTAAATCCCGCTAGGC 57.644 61.111 0.00 0.00 41.78 3.93
6432 6676 1.570813 CGCGTCCATGAATAGAAGCA 58.429 50.000 0.00 0.00 37.34 3.91
6435 6679 1.570813 CAGCGCGTCCATGAATAGAA 58.429 50.000 8.43 0.00 0.00 2.10
6436 6680 0.249447 CCAGCGCGTCCATGAATAGA 60.249 55.000 8.43 0.00 0.00 1.98
6437 6681 1.224069 CCCAGCGCGTCCATGAATAG 61.224 60.000 8.43 0.00 0.00 1.73
6438 6682 1.227527 CCCAGCGCGTCCATGAATA 60.228 57.895 8.43 0.00 0.00 1.75
6439 6683 1.966901 TACCCAGCGCGTCCATGAAT 61.967 55.000 8.43 0.00 0.00 2.57
6440 6684 1.966901 ATACCCAGCGCGTCCATGAA 61.967 55.000 8.43 0.00 0.00 2.57
6441 6685 2.431454 ATACCCAGCGCGTCCATGA 61.431 57.895 8.43 0.00 0.00 3.07
6442 6686 2.108976 ATACCCAGCGCGTCCATG 59.891 61.111 8.43 1.63 0.00 3.66
6443 6687 2.108976 CATACCCAGCGCGTCCAT 59.891 61.111 8.43 0.00 0.00 3.41
6444 6688 4.830765 GCATACCCAGCGCGTCCA 62.831 66.667 8.43 0.00 0.00 4.02
6445 6689 4.830765 TGCATACCCAGCGCGTCC 62.831 66.667 8.43 0.00 33.85 4.79
6446 6690 3.564027 GTGCATACCCAGCGCGTC 61.564 66.667 8.43 0.00 32.37 5.19
6447 6691 3.605749 AAGTGCATACCCAGCGCGT 62.606 57.895 8.43 0.00 46.51 6.01
6448 6692 2.398554 AAAGTGCATACCCAGCGCG 61.399 57.895 0.00 0.00 46.51 6.86
6449 6693 1.137404 CAAAGTGCATACCCAGCGC 59.863 57.895 0.00 0.00 42.55 5.92
6450 6694 1.802636 CCAAAGTGCATACCCAGCG 59.197 57.895 0.00 0.00 33.85 5.18
6451 6695 0.967380 AGCCAAAGTGCATACCCAGC 60.967 55.000 0.00 0.00 0.00 4.85
6452 6696 1.098050 GAGCCAAAGTGCATACCCAG 58.902 55.000 0.00 0.00 0.00 4.45
6453 6697 0.403655 TGAGCCAAAGTGCATACCCA 59.596 50.000 0.00 0.00 0.00 4.51
6454 6698 1.544724 TTGAGCCAAAGTGCATACCC 58.455 50.000 0.00 0.00 0.00 3.69
6455 6699 2.223340 CGATTGAGCCAAAGTGCATACC 60.223 50.000 0.00 0.00 0.00 2.73
6456 6700 2.677836 TCGATTGAGCCAAAGTGCATAC 59.322 45.455 0.00 0.00 0.00 2.39
6457 6701 2.984562 TCGATTGAGCCAAAGTGCATA 58.015 42.857 0.00 0.00 0.00 3.14
6458 6702 1.825090 TCGATTGAGCCAAAGTGCAT 58.175 45.000 0.00 0.00 0.00 3.96
6459 6703 1.536766 CTTCGATTGAGCCAAAGTGCA 59.463 47.619 0.00 0.00 0.00 4.57
6460 6704 1.730446 GCTTCGATTGAGCCAAAGTGC 60.730 52.381 0.00 0.00 0.00 4.40
6461 6705 1.536766 TGCTTCGATTGAGCCAAAGTG 59.463 47.619 5.18 0.00 0.00 3.16
6462 6706 1.896220 TGCTTCGATTGAGCCAAAGT 58.104 45.000 5.18 0.00 0.00 2.66
6463 6707 3.119743 TGAATGCTTCGATTGAGCCAAAG 60.120 43.478 5.18 0.00 0.00 2.77
6464 6708 2.819019 TGAATGCTTCGATTGAGCCAAA 59.181 40.909 5.18 0.00 0.00 3.28
6465 6709 2.162208 GTGAATGCTTCGATTGAGCCAA 59.838 45.455 5.18 0.00 0.00 4.52
6466 6710 1.739466 GTGAATGCTTCGATTGAGCCA 59.261 47.619 5.18 0.00 0.00 4.75
6467 6711 1.064654 GGTGAATGCTTCGATTGAGCC 59.935 52.381 5.18 0.00 0.00 4.70
6468 6712 2.012673 AGGTGAATGCTTCGATTGAGC 58.987 47.619 0.49 0.49 0.00 4.26
6479 6723 1.268999 TGCGTGTTTTCAGGTGAATGC 60.269 47.619 0.00 0.00 37.90 3.56
6484 6728 2.518949 GCATATGCGTGTTTTCAGGTG 58.481 47.619 12.82 0.00 37.90 4.00
6515 6759 3.130340 AGACGGTTGTGCAAATTCAAGTT 59.870 39.130 0.00 0.00 0.00 2.66
6516 6760 2.687935 AGACGGTTGTGCAAATTCAAGT 59.312 40.909 0.00 0.00 0.00 3.16
6518 6762 2.948979 AGAGACGGTTGTGCAAATTCAA 59.051 40.909 0.00 0.00 0.00 2.69
6547 6802 4.400251 TGAAGAATGATTGCACTTGGATCC 59.600 41.667 4.20 4.20 0.00 3.36
6549 6804 4.401519 CCTGAAGAATGATTGCACTTGGAT 59.598 41.667 0.00 0.00 0.00 3.41
6550 6805 3.760151 CCTGAAGAATGATTGCACTTGGA 59.240 43.478 0.00 0.00 0.00 3.53
6551 6806 3.508793 ACCTGAAGAATGATTGCACTTGG 59.491 43.478 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.