Multiple sequence alignment - TraesCS2D01G314900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G314900 chr2D 100.000 8474 0 0 1 8474 404386738 404395211 0.000000e+00 15649.0
1 TraesCS2D01G314900 chr2D 88.649 696 55 8 5674 6349 73136844 73137535 0.000000e+00 826.0
2 TraesCS2D01G314900 chr2D 87.411 699 62 13 5677 6365 636044606 636045288 0.000000e+00 780.0
3 TraesCS2D01G314900 chr2D 88.272 162 19 0 7952 8113 619956787 619956948 2.410000e-45 195.0
4 TraesCS2D01G314900 chr2D 87.209 172 19 3 7944 8114 478874300 478874131 8.680000e-45 193.0
5 TraesCS2D01G314900 chr2D 92.308 39 2 1 480 518 647157637 647157600 4.000000e-03 54.7
6 TraesCS2D01G314900 chr2D 100.000 28 0 0 491 518 176519991 176519964 1.500000e-02 52.8
7 TraesCS2D01G314900 chr2B 96.408 3508 89 16 2196 5677 478905868 478902372 0.000000e+00 5746.0
8 TraesCS2D01G314900 chr2B 92.962 1222 41 22 6581 7780 478902383 478901185 0.000000e+00 1738.0
9 TraesCS2D01G314900 chr2B 92.461 902 39 11 682 1582 478907761 478906888 0.000000e+00 1262.0
10 TraesCS2D01G314900 chr2B 87.571 700 61 8 5674 6349 110624421 110625118 0.000000e+00 787.0
11 TraesCS2D01G314900 chr2B 94.958 357 16 2 8120 8474 478900496 478900140 7.430000e-155 558.0
12 TraesCS2D01G314900 chr2B 76.842 285 28 20 1639 1905 478906422 478906158 8.930000e-25 126.0
13 TraesCS2D01G314900 chr2B 97.297 37 1 0 1622 1658 478906451 478906415 7.100000e-06 63.9
14 TraesCS2D01G314900 chr2A 95.043 3692 110 22 2036 5677 542649575 542653243 0.000000e+00 5736.0
15 TraesCS2D01G314900 chr2A 92.669 1405 42 17 6581 7949 542653232 542654611 0.000000e+00 1967.0
16 TraesCS2D01G314900 chr2A 87.875 1501 55 38 626 2076 542648160 542649583 0.000000e+00 1646.0
17 TraesCS2D01G314900 chr2A 94.278 367 19 2 8110 8474 542654608 542654974 2.070000e-155 560.0
18 TraesCS2D01G314900 chr2A 92.157 51 1 2 4439 4486 542652050 542652100 1.530000e-07 69.4
19 TraesCS2D01G314900 chr4D 91.694 927 52 9 5679 6582 47554976 47555900 0.000000e+00 1262.0
20 TraesCS2D01G314900 chr4D 82.143 252 26 11 69 310 258911037 258911279 1.870000e-46 198.0
21 TraesCS2D01G314900 chr4D 81.967 183 27 3 173 349 20328767 20328949 5.300000e-32 150.0
22 TraesCS2D01G314900 chr4D 77.385 283 42 10 52 314 17753124 17753404 1.910000e-31 148.0
23 TraesCS2D01G314900 chr7A 90.507 927 57 16 5679 6584 408691172 408692088 0.000000e+00 1195.0
24 TraesCS2D01G314900 chr7A 87.544 281 23 4 46 314 421011605 421011325 1.780000e-81 315.0
25 TraesCS2D01G314900 chr7A 80.921 304 47 8 48 347 106681661 106681957 6.620000e-56 230.0
26 TraesCS2D01G314900 chr7A 79.643 280 46 9 43 314 652902207 652902483 3.120000e-44 191.0
27 TraesCS2D01G314900 chr7D 84.783 828 90 11 5676 6474 611009560 611010380 0.000000e+00 798.0
28 TraesCS2D01G314900 chr7D 83.728 633 72 13 5750 6365 261116539 261117157 3.430000e-158 569.0
29 TraesCS2D01G314900 chr7D 78.644 295 49 9 69 353 489201516 489201226 5.220000e-42 183.0
30 TraesCS2D01G314900 chr7D 86.607 112 13 2 6475 6584 611010454 611010565 1.160000e-23 122.0
31 TraesCS2D01G314900 chr5A 83.879 825 98 11 5677 6474 602916987 602917803 0.000000e+00 754.0
32 TraesCS2D01G314900 chr4A 85.955 712 69 17 5675 6365 704622997 704622296 0.000000e+00 732.0
33 TraesCS2D01G314900 chr4A 88.485 165 19 0 7950 8114 669197974 669198138 5.190000e-47 200.0
34 TraesCS2D01G314900 chr4A 80.275 218 19 14 95 304 726350846 726350645 8.870000e-30 143.0
35 TraesCS2D01G314900 chr5D 86.293 642 63 6 5680 6301 437533327 437532691 0.000000e+00 675.0
36 TraesCS2D01G314900 chr5D 92.727 55 3 1 492 545 450683002 450682948 2.540000e-10 78.7
37 TraesCS2D01G314900 chr5D 100.000 28 0 0 491 518 40680904 40680931 1.500000e-02 52.8
38 TraesCS2D01G314900 chrUn 87.737 579 47 8 5677 6236 30115630 30115057 0.000000e+00 654.0
39 TraesCS2D01G314900 chrUn 76.125 511 89 19 5879 6366 305294703 305295203 3.950000e-58 237.0
40 TraesCS2D01G314900 chrUn 92.308 39 1 1 482 518 19741291 19741253 4.000000e-03 54.7
41 TraesCS2D01G314900 chr6A 82.411 705 88 16 5907 6584 425305111 425304416 4.410000e-162 582.0
42 TraesCS2D01G314900 chr6A 79.935 309 45 11 52 346 79193272 79193577 2.400000e-50 211.0
43 TraesCS2D01G314900 chr6A 81.569 255 35 9 69 314 606714125 606714376 5.190000e-47 200.0
44 TraesCS2D01G314900 chr6A 79.239 289 48 9 67 346 79168955 79169240 3.120000e-44 191.0
45 TraesCS2D01G314900 chr6A 78.873 284 57 3 69 350 556095138 556094856 1.120000e-43 189.0
46 TraesCS2D01G314900 chr6A 79.927 274 39 13 52 314 491039960 491040228 4.040000e-43 187.0
47 TraesCS2D01G314900 chr3D 87.351 419 44 4 5679 6093 545782201 545781788 9.960000e-129 472.0
48 TraesCS2D01G314900 chr3D 94.444 162 9 0 7952 8113 550667594 550667433 5.080000e-62 250.0
49 TraesCS2D01G314900 chr3D 84.211 266 23 7 50 308 563612356 563612609 3.060000e-59 241.0
50 TraesCS2D01G314900 chr3D 84.337 249 33 5 69 314 83915349 83915594 1.100000e-58 239.0
51 TraesCS2D01G314900 chr3D 88.344 163 19 0 7951 8113 238999576 238999414 6.710000e-46 196.0
52 TraesCS2D01G314900 chr3D 80.159 252 44 4 69 314 470498839 470498588 5.220000e-42 183.0
53 TraesCS2D01G314900 chr3D 100.000 28 0 0 491 518 24062691 24062664 1.500000e-02 52.8
54 TraesCS2D01G314900 chr1A 84.524 252 27 4 69 314 424014404 424014649 1.100000e-58 239.0
55 TraesCS2D01G314900 chr1A 78.571 252 44 6 71 314 388739115 388739364 3.170000e-34 158.0
56 TraesCS2D01G314900 chr1A 77.736 265 40 9 52 314 550608604 550608357 2.470000e-30 145.0
57 TraesCS2D01G314900 chr1A 77.600 250 43 8 69 309 97163815 97164060 1.150000e-28 139.0
58 TraesCS2D01G314900 chr1D 83.465 254 29 6 69 316 300005982 300006228 3.080000e-54 224.0
59 TraesCS2D01G314900 chr1D 90.000 60 6 0 486 545 119403555 119403614 2.540000e-10 78.7
60 TraesCS2D01G314900 chr1D 100.000 28 0 0 491 518 338832309 338832336 1.500000e-02 52.8
61 TraesCS2D01G314900 chr1D 94.118 34 2 0 485 518 462987518 462987551 1.500000e-02 52.8
62 TraesCS2D01G314900 chr6B 88.623 167 19 0 7952 8118 120647843 120647677 4.010000e-48 204.0
63 TraesCS2D01G314900 chr6B 100.000 29 0 0 491 519 346472157 346472185 4.000000e-03 54.7
64 TraesCS2D01G314900 chr3B 88.415 164 18 1 7958 8120 183601241 183601078 6.710000e-46 196.0
65 TraesCS2D01G314900 chr3B 92.157 51 4 0 296 346 71975537 71975487 1.180000e-08 73.1
66 TraesCS2D01G314900 chr6D 87.135 171 21 1 7951 8120 15801109 15801279 8.680000e-45 193.0
67 TraesCS2D01G314900 chr6D 83.851 161 16 2 51 206 447066242 447066397 2.470000e-30 145.0
68 TraesCS2D01G314900 chr6D 76.170 235 32 14 52 278 423793534 423793316 1.500000e-17 102.0
69 TraesCS2D01G314900 chr6D 100.000 28 0 0 491 518 151944572 151944545 1.500000e-02 52.8
70 TraesCS2D01G314900 chr6D 90.000 40 4 0 479 518 382350154 382350193 1.500000e-02 52.8
71 TraesCS2D01G314900 chr4B 86.286 175 23 1 7948 8121 63754007 63753833 1.120000e-43 189.0
72 TraesCS2D01G314900 chr4B 80.556 252 33 13 69 309 531561316 531561562 6.760000e-41 180.0
73 TraesCS2D01G314900 chr4B 100.000 28 0 0 491 518 662925279 662925306 1.500000e-02 52.8
74 TraesCS2D01G314900 chr7B 91.304 46 3 1 473 518 153696196 153696152 2.550000e-05 62.1
75 TraesCS2D01G314900 chr5B 92.308 39 3 0 480 518 68397646 68397684 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G314900 chr2D 404386738 404395211 8473 False 15649.000000 15649 100.000000 1 8474 1 chr2D.!!$F2 8473
1 TraesCS2D01G314900 chr2D 73136844 73137535 691 False 826.000000 826 88.649000 5674 6349 1 chr2D.!!$F1 675
2 TraesCS2D01G314900 chr2D 636044606 636045288 682 False 780.000000 780 87.411000 5677 6365 1 chr2D.!!$F4 688
3 TraesCS2D01G314900 chr2B 478900140 478907761 7621 True 1582.316667 5746 91.821333 682 8474 6 chr2B.!!$R1 7792
4 TraesCS2D01G314900 chr2B 110624421 110625118 697 False 787.000000 787 87.571000 5674 6349 1 chr2B.!!$F1 675
5 TraesCS2D01G314900 chr2A 542648160 542654974 6814 False 1995.680000 5736 92.404400 626 8474 5 chr2A.!!$F1 7848
6 TraesCS2D01G314900 chr4D 47554976 47555900 924 False 1262.000000 1262 91.694000 5679 6582 1 chr4D.!!$F3 903
7 TraesCS2D01G314900 chr7A 408691172 408692088 916 False 1195.000000 1195 90.507000 5679 6584 1 chr7A.!!$F2 905
8 TraesCS2D01G314900 chr7D 261116539 261117157 618 False 569.000000 569 83.728000 5750 6365 1 chr7D.!!$F1 615
9 TraesCS2D01G314900 chr7D 611009560 611010565 1005 False 460.000000 798 85.695000 5676 6584 2 chr7D.!!$F2 908
10 TraesCS2D01G314900 chr5A 602916987 602917803 816 False 754.000000 754 83.879000 5677 6474 1 chr5A.!!$F1 797
11 TraesCS2D01G314900 chr4A 704622296 704622997 701 True 732.000000 732 85.955000 5675 6365 1 chr4A.!!$R1 690
12 TraesCS2D01G314900 chr5D 437532691 437533327 636 True 675.000000 675 86.293000 5680 6301 1 chr5D.!!$R1 621
13 TraesCS2D01G314900 chrUn 30115057 30115630 573 True 654.000000 654 87.737000 5677 6236 1 chrUn.!!$R2 559
14 TraesCS2D01G314900 chrUn 305294703 305295203 500 False 237.000000 237 76.125000 5879 6366 1 chrUn.!!$F1 487
15 TraesCS2D01G314900 chr6A 425304416 425305111 695 True 582.000000 582 82.411000 5907 6584 1 chr6A.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.036105 GCCTGATTTTTGGGCCCAAG 60.036 55.000 35.02 23.09 39.96 3.61 F
560 561 0.037303 ACGTGAACGGAGGGACTAGA 59.963 55.000 7.86 0.00 44.95 2.43 F
2145 2685 0.035458 CTCCTTCTGTGAAGCCCGTT 59.965 55.000 2.08 0.00 0.00 4.44 F
2789 3381 0.248743 TCACGTTCCACTCACACGAC 60.249 55.000 0.00 0.00 37.37 4.34 F
3075 3675 0.319900 AGCAACACGAGCGAATGAGT 60.320 50.000 0.00 0.00 37.01 3.41 F
3076 3676 1.067846 AGCAACACGAGCGAATGAGTA 60.068 47.619 0.00 0.00 37.01 2.59 F
4183 4791 3.128589 GCGGTTGGTGTGATAATGTCATT 59.871 43.478 3.06 3.06 39.48 2.57 F
5149 5758 0.036010 CGCATCCTGGAAGAGTTGGT 60.036 55.000 0.00 0.00 34.07 3.67 F
5670 6282 4.952957 TCTGGTTTCATTTTGAACCAGACA 59.047 37.500 25.81 11.55 46.75 3.41 F
6796 7533 0.030101 TTTTTCCTCAAGGCGTTGCG 59.970 50.000 14.22 8.19 33.23 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2682 0.321671 TCTGGAGGGAGCTTCAAACG 59.678 55.000 0.00 0.0 0.00 3.60 R
2430 3016 1.221840 CCTCCGCAGTGCACCTTAT 59.778 57.895 16.83 0.0 0.00 1.73 R
3820 4428 2.706190 AGGAGGCGCATTAGTATTTCCT 59.294 45.455 10.83 0.0 0.00 3.36 R
4749 5358 3.446799 CAAACAAATACCATGCCCATCG 58.553 45.455 0.00 0.0 0.00 3.84 R
4947 5556 2.102420 TCAGGCTGAGAGACAAAAACGA 59.898 45.455 14.43 0.0 0.00 3.85 R
4948 5557 2.483876 TCAGGCTGAGAGACAAAAACG 58.516 47.619 14.43 0.0 0.00 3.60 R
5863 6488 0.755686 AGATCTGCTCGCTTTAGGGG 59.244 55.000 0.00 0.0 0.00 4.79 R
5996 6626 1.134098 GTTGGATCCGGTGATGGTGAT 60.134 52.381 7.39 0.0 0.00 3.06 R
7419 8176 0.458543 AGTCGTATGGAAGCGTGCTG 60.459 55.000 0.00 0.0 0.00 4.41 R
8347 9511 0.392461 GACATGGCTTACGAGGGCAA 60.392 55.000 0.00 0.0 42.27 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.860648 AAGAAAGATTACTCCCCCTCAAA 57.139 39.130 0.00 0.00 0.00 2.69
23 24 5.860648 AGAAAGATTACTCCCCCTCAAAA 57.139 39.130 0.00 0.00 0.00 2.44
24 25 6.214177 AGAAAGATTACTCCCCCTCAAAAA 57.786 37.500 0.00 0.00 0.00 1.94
25 26 6.249192 AGAAAGATTACTCCCCCTCAAAAAG 58.751 40.000 0.00 0.00 0.00 2.27
26 27 5.860648 AAGATTACTCCCCCTCAAAAAGA 57.139 39.130 0.00 0.00 0.00 2.52
27 28 5.860648 AGATTACTCCCCCTCAAAAAGAA 57.139 39.130 0.00 0.00 0.00 2.52
28 29 6.214177 AGATTACTCCCCCTCAAAAAGAAA 57.786 37.500 0.00 0.00 0.00 2.52
29 30 6.620429 AGATTACTCCCCCTCAAAAAGAAAA 58.380 36.000 0.00 0.00 0.00 2.29
30 31 6.721668 AGATTACTCCCCCTCAAAAAGAAAAG 59.278 38.462 0.00 0.00 0.00 2.27
31 32 4.536295 ACTCCCCCTCAAAAAGAAAAGA 57.464 40.909 0.00 0.00 0.00 2.52
32 33 4.878968 ACTCCCCCTCAAAAAGAAAAGAA 58.121 39.130 0.00 0.00 0.00 2.52
33 34 4.649674 ACTCCCCCTCAAAAAGAAAAGAAC 59.350 41.667 0.00 0.00 0.00 3.01
34 35 4.615513 TCCCCCTCAAAAAGAAAAGAACA 58.384 39.130 0.00 0.00 0.00 3.18
35 36 5.026790 TCCCCCTCAAAAAGAAAAGAACAA 58.973 37.500 0.00 0.00 0.00 2.83
36 37 5.485708 TCCCCCTCAAAAAGAAAAGAACAAA 59.514 36.000 0.00 0.00 0.00 2.83
37 38 6.013293 TCCCCCTCAAAAAGAAAAGAACAAAA 60.013 34.615 0.00 0.00 0.00 2.44
38 39 6.316140 CCCCCTCAAAAAGAAAAGAACAAAAG 59.684 38.462 0.00 0.00 0.00 2.27
39 40 7.102993 CCCCTCAAAAAGAAAAGAACAAAAGA 58.897 34.615 0.00 0.00 0.00 2.52
40 41 7.770433 CCCCTCAAAAAGAAAAGAACAAAAGAT 59.230 33.333 0.00 0.00 0.00 2.40
41 42 9.166173 CCCTCAAAAAGAAAAGAACAAAAGATT 57.834 29.630 0.00 0.00 0.00 2.40
59 60 9.712305 CAAAAGATTACTCCATACTATACCTGG 57.288 37.037 0.00 0.00 0.00 4.45
60 61 7.483580 AAGATTACTCCATACTATACCTGGC 57.516 40.000 0.00 0.00 0.00 4.85
61 62 5.958987 AGATTACTCCATACTATACCTGGCC 59.041 44.000 0.00 0.00 0.00 5.36
62 63 3.630625 ACTCCATACTATACCTGGCCA 57.369 47.619 4.71 4.71 0.00 5.36
63 64 4.147667 ACTCCATACTATACCTGGCCAT 57.852 45.455 5.51 0.00 0.00 4.40
64 65 4.097418 ACTCCATACTATACCTGGCCATC 58.903 47.826 5.51 0.00 0.00 3.51
65 66 4.202836 ACTCCATACTATACCTGGCCATCT 60.203 45.833 5.51 0.00 0.00 2.90
66 67 4.096681 TCCATACTATACCTGGCCATCTG 58.903 47.826 5.51 0.00 0.00 2.90
67 68 3.369892 CCATACTATACCTGGCCATCTGC 60.370 52.174 5.51 0.00 40.16 4.26
92 93 4.832608 GGCCTACCGAAGCCCGTG 62.833 72.222 0.00 0.00 43.76 4.94
93 94 3.766691 GCCTACCGAAGCCCGTGA 61.767 66.667 0.00 0.00 36.31 4.35
94 95 2.183555 CCTACCGAAGCCCGTGAC 59.816 66.667 0.00 0.00 36.31 3.67
95 96 2.642254 CCTACCGAAGCCCGTGACA 61.642 63.158 0.00 0.00 36.31 3.58
96 97 1.153823 CTACCGAAGCCCGTGACAG 60.154 63.158 0.00 0.00 36.31 3.51
97 98 1.592400 CTACCGAAGCCCGTGACAGA 61.592 60.000 0.00 0.00 36.31 3.41
98 99 1.180456 TACCGAAGCCCGTGACAGAA 61.180 55.000 0.00 0.00 36.31 3.02
99 100 1.301401 CCGAAGCCCGTGACAGAAA 60.301 57.895 0.00 0.00 36.31 2.52
100 101 0.882927 CCGAAGCCCGTGACAGAAAA 60.883 55.000 0.00 0.00 36.31 2.29
101 102 0.234884 CGAAGCCCGTGACAGAAAAC 59.765 55.000 0.00 0.00 0.00 2.43
102 103 0.591659 GAAGCCCGTGACAGAAAACC 59.408 55.000 0.00 0.00 0.00 3.27
103 104 0.182775 AAGCCCGTGACAGAAAACCT 59.817 50.000 0.00 0.00 0.00 3.50
104 105 1.053424 AGCCCGTGACAGAAAACCTA 58.947 50.000 0.00 0.00 0.00 3.08
105 106 1.002087 AGCCCGTGACAGAAAACCTAG 59.998 52.381 0.00 0.00 0.00 3.02
106 107 1.944430 GCCCGTGACAGAAAACCTAGG 60.944 57.143 7.41 7.41 0.00 3.02
107 108 1.439679 CCGTGACAGAAAACCTAGGC 58.560 55.000 9.30 0.00 0.00 3.93
108 109 1.270625 CCGTGACAGAAAACCTAGGCA 60.271 52.381 9.30 0.00 0.00 4.75
109 110 1.798813 CGTGACAGAAAACCTAGGCAC 59.201 52.381 9.30 5.26 0.00 5.01
110 111 1.798813 GTGACAGAAAACCTAGGCACG 59.201 52.381 9.30 0.00 0.00 5.34
111 112 1.689813 TGACAGAAAACCTAGGCACGA 59.310 47.619 9.30 0.00 0.00 4.35
112 113 2.288825 TGACAGAAAACCTAGGCACGAG 60.289 50.000 9.30 0.00 0.00 4.18
113 114 1.079503 CAGAAAACCTAGGCACGAGC 58.920 55.000 9.30 0.00 41.10 5.03
145 146 3.996614 CCGTCGGGCCTGATTTTT 58.003 55.556 19.55 0.00 0.00 1.94
146 147 1.506262 CCGTCGGGCCTGATTTTTG 59.494 57.895 19.55 5.69 0.00 2.44
147 148 1.506262 CGTCGGGCCTGATTTTTGG 59.494 57.895 19.55 0.00 0.00 3.28
148 149 1.890174 GTCGGGCCTGATTTTTGGG 59.110 57.895 19.55 0.00 0.00 4.12
149 150 1.981853 TCGGGCCTGATTTTTGGGC 60.982 57.895 11.27 0.00 46.59 5.36
152 153 3.804490 GCCTGATTTTTGGGCCCA 58.196 55.556 24.45 24.45 39.96 5.36
153 154 2.065483 GCCTGATTTTTGGGCCCAA 58.935 52.632 34.07 34.07 39.96 4.12
154 155 0.036105 GCCTGATTTTTGGGCCCAAG 60.036 55.000 35.02 23.09 39.96 3.61
155 156 0.036105 CCTGATTTTTGGGCCCAAGC 60.036 55.000 35.02 24.76 37.24 4.01
172 173 2.348243 CCCGGCCCGAAAGTGTTA 59.652 61.111 3.71 0.00 0.00 2.41
173 174 1.302671 CCCGGCCCGAAAGTGTTAA 60.303 57.895 3.71 0.00 0.00 2.01
174 175 0.890090 CCCGGCCCGAAAGTGTTAAA 60.890 55.000 3.71 0.00 0.00 1.52
175 176 0.519961 CCGGCCCGAAAGTGTTAAAG 59.480 55.000 3.71 0.00 0.00 1.85
176 177 0.109919 CGGCCCGAAAGTGTTAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
177 178 0.242825 GGCCCGAAAGTGTTAAAGCC 59.757 55.000 0.00 0.00 0.00 4.35
178 179 0.242825 GCCCGAAAGTGTTAAAGCCC 59.757 55.000 0.00 0.00 0.00 5.19
179 180 0.519961 CCCGAAAGTGTTAAAGCCCG 59.480 55.000 0.00 0.00 0.00 6.13
180 181 1.232119 CCGAAAGTGTTAAAGCCCGT 58.768 50.000 0.00 0.00 0.00 5.28
181 182 1.196127 CCGAAAGTGTTAAAGCCCGTC 59.804 52.381 0.00 0.00 0.00 4.79
182 183 1.136446 CGAAAGTGTTAAAGCCCGTCG 60.136 52.381 0.00 0.00 0.00 5.12
183 184 1.196127 GAAAGTGTTAAAGCCCGTCGG 59.804 52.381 3.60 3.60 0.00 4.79
214 215 3.081409 GGCCGGGCCTCTTCAGTA 61.081 66.667 30.86 0.00 46.69 2.74
215 216 2.666098 GGCCGGGCCTCTTCAGTAA 61.666 63.158 30.86 0.00 46.69 2.24
216 217 1.298667 GCCGGGCCTCTTCAGTAAA 59.701 57.895 8.12 0.00 0.00 2.01
217 218 0.107165 GCCGGGCCTCTTCAGTAAAT 60.107 55.000 8.12 0.00 0.00 1.40
218 219 1.954927 CCGGGCCTCTTCAGTAAATC 58.045 55.000 0.84 0.00 0.00 2.17
219 220 1.571919 CGGGCCTCTTCAGTAAATCG 58.428 55.000 0.84 0.00 0.00 3.34
220 221 1.134788 CGGGCCTCTTCAGTAAATCGT 60.135 52.381 0.84 0.00 0.00 3.73
221 222 2.280628 GGGCCTCTTCAGTAAATCGTG 58.719 52.381 0.84 0.00 0.00 4.35
222 223 2.093658 GGGCCTCTTCAGTAAATCGTGA 60.094 50.000 0.84 0.00 0.00 4.35
223 224 3.596214 GGCCTCTTCAGTAAATCGTGAA 58.404 45.455 0.00 0.00 0.00 3.18
224 225 4.000988 GGCCTCTTCAGTAAATCGTGAAA 58.999 43.478 0.00 0.00 32.36 2.69
225 226 4.454504 GGCCTCTTCAGTAAATCGTGAAAA 59.545 41.667 0.00 0.00 32.36 2.29
226 227 5.383130 GCCTCTTCAGTAAATCGTGAAAAC 58.617 41.667 0.00 0.00 32.36 2.43
227 228 5.049680 GCCTCTTCAGTAAATCGTGAAAACA 60.050 40.000 0.00 0.00 32.36 2.83
228 229 6.593978 CCTCTTCAGTAAATCGTGAAAACAG 58.406 40.000 0.00 0.00 32.36 3.16
229 230 6.202954 CCTCTTCAGTAAATCGTGAAAACAGT 59.797 38.462 0.00 0.00 32.36 3.55
230 231 6.943981 TCTTCAGTAAATCGTGAAAACAGTG 58.056 36.000 0.00 0.00 32.36 3.66
231 232 5.666969 TCAGTAAATCGTGAAAACAGTGG 57.333 39.130 0.00 0.00 0.00 4.00
232 233 4.513692 TCAGTAAATCGTGAAAACAGTGGG 59.486 41.667 0.00 0.00 0.00 4.61
233 234 2.793278 AAATCGTGAAAACAGTGGGC 57.207 45.000 0.00 0.00 0.00 5.36
234 235 0.958822 AATCGTGAAAACAGTGGGCC 59.041 50.000 0.00 0.00 0.00 5.80
235 236 0.893727 ATCGTGAAAACAGTGGGCCC 60.894 55.000 17.59 17.59 0.00 5.80
236 237 2.903547 CGTGAAAACAGTGGGCCCG 61.904 63.158 19.37 5.25 0.00 6.13
237 238 1.527380 GTGAAAACAGTGGGCCCGA 60.527 57.895 19.37 3.06 0.00 5.14
238 239 1.228124 TGAAAACAGTGGGCCCGAG 60.228 57.895 19.37 12.10 0.00 4.63
239 240 2.597510 AAAACAGTGGGCCCGAGC 60.598 61.111 19.37 10.20 38.76 5.03
268 269 3.550437 GCCTCAGGCTCAAAATCTAGA 57.450 47.619 9.09 0.00 46.69 2.43
269 270 3.202097 GCCTCAGGCTCAAAATCTAGAC 58.798 50.000 9.09 0.00 46.69 2.59
270 271 3.802866 CCTCAGGCTCAAAATCTAGACC 58.197 50.000 0.00 0.00 0.00 3.85
271 272 3.432890 CCTCAGGCTCAAAATCTAGACCC 60.433 52.174 0.00 0.00 0.00 4.46
272 273 2.168521 TCAGGCTCAAAATCTAGACCCG 59.831 50.000 0.00 0.00 0.00 5.28
273 274 2.168521 CAGGCTCAAAATCTAGACCCGA 59.831 50.000 0.00 0.00 0.00 5.14
274 275 2.432510 AGGCTCAAAATCTAGACCCGAG 59.567 50.000 0.00 0.22 0.00 4.63
275 276 2.205911 GCTCAAAATCTAGACCCGAGC 58.794 52.381 15.46 15.46 37.81 5.03
276 277 2.827652 CTCAAAATCTAGACCCGAGCC 58.172 52.381 0.00 0.00 0.00 4.70
277 278 1.485066 TCAAAATCTAGACCCGAGCCC 59.515 52.381 0.00 0.00 0.00 5.19
278 279 0.464452 AAAATCTAGACCCGAGCCCG 59.536 55.000 0.00 0.00 0.00 6.13
336 337 4.894896 GGGCCGGGCTACCAATGG 62.895 72.222 28.80 0.00 36.13 3.16
343 344 4.242602 GCTACCAATGGCCAGGTC 57.757 61.111 19.47 3.69 39.31 3.85
344 345 1.609783 GCTACCAATGGCCAGGTCT 59.390 57.895 19.47 0.00 39.31 3.85
345 346 0.837272 GCTACCAATGGCCAGGTCTA 59.163 55.000 19.47 3.38 39.31 2.59
346 347 1.475213 GCTACCAATGGCCAGGTCTAC 60.475 57.143 19.47 7.45 39.31 2.59
347 348 2.119495 CTACCAATGGCCAGGTCTACT 58.881 52.381 19.47 0.00 39.31 2.57
348 349 0.912486 ACCAATGGCCAGGTCTACTC 59.088 55.000 13.05 0.00 30.79 2.59
349 350 0.181350 CCAATGGCCAGGTCTACTCC 59.819 60.000 13.05 0.00 0.00 3.85
350 351 0.911769 CAATGGCCAGGTCTACTCCA 59.088 55.000 13.05 0.00 0.00 3.86
351 352 1.492176 CAATGGCCAGGTCTACTCCAT 59.508 52.381 13.05 0.00 39.05 3.41
352 353 1.135094 ATGGCCAGGTCTACTCCATG 58.865 55.000 13.05 0.00 36.29 3.66
353 354 1.147153 GGCCAGGTCTACTCCATGC 59.853 63.158 0.00 0.00 0.00 4.06
354 355 1.341156 GGCCAGGTCTACTCCATGCT 61.341 60.000 0.00 0.00 0.00 3.79
355 356 0.179062 GCCAGGTCTACTCCATGCTG 60.179 60.000 0.00 0.00 0.00 4.41
356 357 0.179062 CCAGGTCTACTCCATGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
357 358 0.538584 CAGGTCTACTCCATGCTGCA 59.461 55.000 4.13 4.13 0.00 4.41
358 359 1.140452 CAGGTCTACTCCATGCTGCAT 59.860 52.381 9.81 9.81 0.00 3.96
359 360 1.140452 AGGTCTACTCCATGCTGCATG 59.860 52.381 30.65 30.65 41.10 4.06
367 368 2.100846 CATGCTGCATGGTTAGCGT 58.899 52.632 30.12 0.00 42.74 5.07
368 369 1.298602 CATGCTGCATGGTTAGCGTA 58.701 50.000 30.12 0.00 42.74 4.42
369 370 1.670295 CATGCTGCATGGTTAGCGTAA 59.330 47.619 30.12 0.00 42.74 3.18
370 371 1.083489 TGCTGCATGGTTAGCGTAAC 58.917 50.000 0.00 0.00 42.74 2.50
371 372 1.338674 TGCTGCATGGTTAGCGTAACT 60.339 47.619 0.00 0.00 42.74 2.24
372 373 1.062587 GCTGCATGGTTAGCGTAACTG 59.937 52.381 0.00 2.29 38.68 3.16
373 374 2.616960 CTGCATGGTTAGCGTAACTGA 58.383 47.619 0.00 0.00 38.68 3.41
374 375 3.000041 CTGCATGGTTAGCGTAACTGAA 59.000 45.455 0.00 0.00 38.68 3.02
375 376 3.605634 TGCATGGTTAGCGTAACTGAAT 58.394 40.909 0.00 0.01 38.68 2.57
376 377 3.373748 TGCATGGTTAGCGTAACTGAATG 59.626 43.478 0.00 9.27 38.68 2.67
377 378 3.242739 GCATGGTTAGCGTAACTGAATGG 60.243 47.826 0.00 0.00 38.68 3.16
378 379 3.965379 TGGTTAGCGTAACTGAATGGA 57.035 42.857 7.50 0.00 38.68 3.41
379 380 3.857052 TGGTTAGCGTAACTGAATGGAG 58.143 45.455 7.50 0.00 38.68 3.86
380 381 3.195661 GGTTAGCGTAACTGAATGGAGG 58.804 50.000 7.50 0.00 38.68 4.30
381 382 3.118884 GGTTAGCGTAACTGAATGGAGGA 60.119 47.826 7.50 0.00 38.68 3.71
382 383 4.501071 GTTAGCGTAACTGAATGGAGGAA 58.499 43.478 0.00 0.00 35.81 3.36
383 384 3.695830 AGCGTAACTGAATGGAGGAAA 57.304 42.857 0.00 0.00 0.00 3.13
384 385 3.600388 AGCGTAACTGAATGGAGGAAAG 58.400 45.455 0.00 0.00 0.00 2.62
385 386 3.260884 AGCGTAACTGAATGGAGGAAAGA 59.739 43.478 0.00 0.00 0.00 2.52
386 387 3.371285 GCGTAACTGAATGGAGGAAAGAC 59.629 47.826 0.00 0.00 0.00 3.01
387 388 4.566004 CGTAACTGAATGGAGGAAAGACA 58.434 43.478 0.00 0.00 0.00 3.41
388 389 4.994852 CGTAACTGAATGGAGGAAAGACAA 59.005 41.667 0.00 0.00 0.00 3.18
389 390 5.468746 CGTAACTGAATGGAGGAAAGACAAA 59.531 40.000 0.00 0.00 0.00 2.83
390 391 5.774498 AACTGAATGGAGGAAAGACAAAC 57.226 39.130 0.00 0.00 0.00 2.93
391 392 5.053978 ACTGAATGGAGGAAAGACAAACT 57.946 39.130 0.00 0.00 0.00 2.66
392 393 5.066593 ACTGAATGGAGGAAAGACAAACTC 58.933 41.667 0.00 0.00 0.00 3.01
396 397 3.493767 GGAGGAAAGACAAACTCCAGT 57.506 47.619 4.78 0.00 46.81 4.00
397 398 3.821748 GGAGGAAAGACAAACTCCAGTT 58.178 45.455 4.78 0.00 46.81 3.16
398 399 3.565902 GGAGGAAAGACAAACTCCAGTTG 59.434 47.826 4.78 0.00 46.81 3.16
399 400 2.952310 AGGAAAGACAAACTCCAGTTGC 59.048 45.455 0.00 0.00 38.44 4.17
400 401 2.687935 GGAAAGACAAACTCCAGTTGCA 59.312 45.455 0.00 0.00 38.44 4.08
401 402 3.130340 GGAAAGACAAACTCCAGTTGCAA 59.870 43.478 0.00 0.00 38.44 4.08
402 403 4.381505 GGAAAGACAAACTCCAGTTGCAAA 60.382 41.667 0.00 0.00 38.44 3.68
415 416 1.039068 TTGCAAACACATGACCTGGG 58.961 50.000 0.00 0.00 0.00 4.45
416 417 0.184692 TGCAAACACATGACCTGGGA 59.815 50.000 0.00 0.00 30.50 4.37
417 418 1.203038 TGCAAACACATGACCTGGGAT 60.203 47.619 0.00 0.00 30.50 3.85
418 419 1.895131 GCAAACACATGACCTGGGATT 59.105 47.619 0.00 0.00 30.50 3.01
419 420 3.088532 GCAAACACATGACCTGGGATTA 58.911 45.455 0.00 0.00 30.50 1.75
420 421 3.509575 GCAAACACATGACCTGGGATTAA 59.490 43.478 0.00 0.00 30.50 1.40
421 422 4.618227 GCAAACACATGACCTGGGATTAAC 60.618 45.833 0.00 0.00 30.50 2.01
422 423 2.985896 ACACATGACCTGGGATTAACG 58.014 47.619 0.00 0.00 30.50 3.18
423 424 2.569853 ACACATGACCTGGGATTAACGA 59.430 45.455 0.00 0.00 30.50 3.85
424 425 3.008594 ACACATGACCTGGGATTAACGAA 59.991 43.478 0.00 0.00 30.50 3.85
425 426 4.006989 CACATGACCTGGGATTAACGAAA 58.993 43.478 0.00 0.00 0.00 3.46
426 427 4.457603 CACATGACCTGGGATTAACGAAAA 59.542 41.667 0.00 0.00 0.00 2.29
427 428 5.125417 CACATGACCTGGGATTAACGAAAAT 59.875 40.000 0.00 0.00 0.00 1.82
428 429 5.125417 ACATGACCTGGGATTAACGAAAATG 59.875 40.000 0.00 0.00 0.00 2.32
429 430 4.912586 TGACCTGGGATTAACGAAAATGA 58.087 39.130 0.00 0.00 0.00 2.57
430 431 5.317808 TGACCTGGGATTAACGAAAATGAA 58.682 37.500 0.00 0.00 0.00 2.57
431 432 5.770663 TGACCTGGGATTAACGAAAATGAAA 59.229 36.000 0.00 0.00 0.00 2.69
432 433 6.265649 TGACCTGGGATTAACGAAAATGAAAA 59.734 34.615 0.00 0.00 0.00 2.29
433 434 7.039363 TGACCTGGGATTAACGAAAATGAAAAT 60.039 33.333 0.00 0.00 0.00 1.82
434 435 8.356000 ACCTGGGATTAACGAAAATGAAAATA 57.644 30.769 0.00 0.00 0.00 1.40
435 436 8.977412 ACCTGGGATTAACGAAAATGAAAATAT 58.023 29.630 0.00 0.00 0.00 1.28
436 437 9.248291 CCTGGGATTAACGAAAATGAAAATATG 57.752 33.333 0.00 0.00 0.00 1.78
445 446 8.789881 ACGAAAATGAAAATATGAAACAACGA 57.210 26.923 0.00 0.00 0.00 3.85
446 447 9.239002 ACGAAAATGAAAATATGAAACAACGAA 57.761 25.926 0.00 0.00 0.00 3.85
450 451 9.810231 AAATGAAAATATGAAACAACGAAATGC 57.190 25.926 0.00 0.00 0.00 3.56
451 452 7.936950 TGAAAATATGAAACAACGAAATGCA 57.063 28.000 0.00 0.00 0.00 3.96
452 453 8.357796 TGAAAATATGAAACAACGAAATGCAA 57.642 26.923 0.00 0.00 0.00 4.08
453 454 8.272176 TGAAAATATGAAACAACGAAATGCAAC 58.728 29.630 0.00 0.00 0.00 4.17
454 455 7.945033 AAATATGAAACAACGAAATGCAACT 57.055 28.000 0.00 0.00 0.00 3.16
455 456 7.945033 AATATGAAACAACGAAATGCAACTT 57.055 28.000 0.00 0.00 0.00 2.66
456 457 7.945033 ATATGAAACAACGAAATGCAACTTT 57.055 28.000 0.00 0.00 0.00 2.66
457 458 6.660887 ATGAAACAACGAAATGCAACTTTT 57.339 29.167 0.00 0.00 0.00 2.27
458 459 6.473397 TGAAACAACGAAATGCAACTTTTT 57.527 29.167 0.00 0.00 0.00 1.94
509 510 9.720769 ATTATTACCTTCGTCCCATAATGTAAG 57.279 33.333 0.00 0.00 0.00 2.34
510 511 6.795144 TTACCTTCGTCCCATAATGTAAGA 57.205 37.500 0.00 0.00 0.00 2.10
511 512 5.019785 ACCTTCGTCCCATAATGTAAGAC 57.980 43.478 0.00 0.00 0.00 3.01
512 513 4.468510 ACCTTCGTCCCATAATGTAAGACA 59.531 41.667 0.00 0.00 0.00 3.41
513 514 5.130477 ACCTTCGTCCCATAATGTAAGACAT 59.870 40.000 0.00 0.00 41.31 3.06
515 516 6.542370 CCTTCGTCCCATAATGTAAGACATTT 59.458 38.462 9.92 0.00 45.80 2.32
516 517 7.067008 CCTTCGTCCCATAATGTAAGACATTTT 59.933 37.037 9.92 0.33 45.80 1.82
517 518 7.931578 TCGTCCCATAATGTAAGACATTTTT 57.068 32.000 9.92 0.00 45.80 1.94
518 519 7.757526 TCGTCCCATAATGTAAGACATTTTTG 58.242 34.615 9.92 8.46 45.80 2.44
519 520 6.472163 CGTCCCATAATGTAAGACATTTTTGC 59.528 38.462 9.92 0.00 45.80 3.68
520 521 7.319646 GTCCCATAATGTAAGACATTTTTGCA 58.680 34.615 9.92 0.00 45.80 4.08
521 522 7.489113 GTCCCATAATGTAAGACATTTTTGCAG 59.511 37.037 9.92 4.46 45.80 4.41
522 523 7.178274 TCCCATAATGTAAGACATTTTTGCAGT 59.822 33.333 9.92 0.00 45.80 4.40
523 524 7.818930 CCCATAATGTAAGACATTTTTGCAGTT 59.181 33.333 9.92 0.00 45.80 3.16
524 525 8.863049 CCATAATGTAAGACATTTTTGCAGTTC 58.137 33.333 9.92 0.00 45.80 3.01
525 526 9.409312 CATAATGTAAGACATTTTTGCAGTTCA 57.591 29.630 9.92 0.00 45.80 3.18
526 527 7.698836 AATGTAAGACATTTTTGCAGTTCAC 57.301 32.000 0.00 0.00 45.80 3.18
527 528 6.449635 TGTAAGACATTTTTGCAGTTCACT 57.550 33.333 0.00 0.00 0.00 3.41
528 529 6.862209 TGTAAGACATTTTTGCAGTTCACTT 58.138 32.000 0.00 0.00 0.00 3.16
529 530 7.319646 TGTAAGACATTTTTGCAGTTCACTTT 58.680 30.769 0.00 0.00 0.00 2.66
530 531 8.462811 TGTAAGACATTTTTGCAGTTCACTTTA 58.537 29.630 0.00 0.00 0.00 1.85
531 532 9.296400 GTAAGACATTTTTGCAGTTCACTTTAA 57.704 29.630 0.00 0.00 0.00 1.52
532 533 8.770438 AAGACATTTTTGCAGTTCACTTTAAA 57.230 26.923 0.00 0.00 0.00 1.52
533 534 8.185003 AGACATTTTTGCAGTTCACTTTAAAC 57.815 30.769 0.00 0.00 0.00 2.01
534 535 8.034804 AGACATTTTTGCAGTTCACTTTAAACT 58.965 29.630 0.00 0.00 37.44 2.66
535 536 8.546597 ACATTTTTGCAGTTCACTTTAAACTT 57.453 26.923 0.00 0.00 34.79 2.66
536 537 8.655970 ACATTTTTGCAGTTCACTTTAAACTTC 58.344 29.630 0.00 0.00 34.79 3.01
537 538 6.862944 TTTTGCAGTTCACTTTAAACTTCG 57.137 33.333 0.00 0.00 34.79 3.79
538 539 5.804692 TTGCAGTTCACTTTAAACTTCGA 57.195 34.783 0.00 0.00 34.79 3.71
539 540 5.804692 TGCAGTTCACTTTAAACTTCGAA 57.195 34.783 0.00 0.00 34.79 3.71
540 541 6.184580 TGCAGTTCACTTTAAACTTCGAAA 57.815 33.333 0.00 0.00 34.79 3.46
541 542 6.613233 TGCAGTTCACTTTAAACTTCGAAAA 58.387 32.000 0.00 0.00 34.79 2.29
542 543 6.525280 TGCAGTTCACTTTAAACTTCGAAAAC 59.475 34.615 0.00 0.00 34.79 2.43
543 544 6.290385 GCAGTTCACTTTAAACTTCGAAAACG 60.290 38.462 0.00 0.00 34.79 3.60
544 545 6.739550 CAGTTCACTTTAAACTTCGAAAACGT 59.260 34.615 0.00 0.00 34.79 3.99
545 546 6.739550 AGTTCACTTTAAACTTCGAAAACGTG 59.260 34.615 9.47 9.47 33.19 4.49
546 547 6.406093 TCACTTTAAACTTCGAAAACGTGA 57.594 33.333 12.82 12.82 0.00 4.35
547 548 6.829703 TCACTTTAAACTTCGAAAACGTGAA 58.170 32.000 13.90 0.45 0.00 3.18
548 549 6.737750 TCACTTTAAACTTCGAAAACGTGAAC 59.262 34.615 13.90 0.00 0.00 3.18
549 550 5.729424 ACTTTAAACTTCGAAAACGTGAACG 59.271 36.000 0.00 0.40 46.33 3.95
550 551 2.724744 AACTTCGAAAACGTGAACGG 57.275 45.000 7.86 0.00 44.95 4.44
551 552 1.925229 ACTTCGAAAACGTGAACGGA 58.075 45.000 7.86 0.00 44.95 4.69
552 553 1.856597 ACTTCGAAAACGTGAACGGAG 59.143 47.619 7.86 12.88 44.95 4.63
553 554 1.191647 CTTCGAAAACGTGAACGGAGG 59.808 52.381 7.86 0.00 44.95 4.30
554 555 0.598158 TCGAAAACGTGAACGGAGGG 60.598 55.000 7.86 0.00 44.95 4.30
555 556 0.598158 CGAAAACGTGAACGGAGGGA 60.598 55.000 7.86 0.00 44.95 4.20
556 557 0.863799 GAAAACGTGAACGGAGGGAC 59.136 55.000 7.86 0.00 44.95 4.46
557 558 0.466963 AAAACGTGAACGGAGGGACT 59.533 50.000 7.86 0.00 44.95 3.85
558 559 1.331214 AAACGTGAACGGAGGGACTA 58.669 50.000 7.86 0.00 44.95 2.59
559 560 0.886563 AACGTGAACGGAGGGACTAG 59.113 55.000 7.86 0.00 44.95 2.57
560 561 0.037303 ACGTGAACGGAGGGACTAGA 59.963 55.000 7.86 0.00 44.95 2.43
561 562 1.171308 CGTGAACGGAGGGACTAGAA 58.829 55.000 0.00 0.00 41.55 2.10
562 563 1.542915 CGTGAACGGAGGGACTAGAAA 59.457 52.381 0.00 0.00 41.55 2.52
563 564 2.029649 CGTGAACGGAGGGACTAGAAAA 60.030 50.000 0.00 0.00 41.55 2.29
564 565 3.586892 GTGAACGGAGGGACTAGAAAAG 58.413 50.000 0.00 0.00 41.55 2.27
565 566 3.006644 GTGAACGGAGGGACTAGAAAAGT 59.993 47.826 0.00 0.00 41.55 2.66
566 567 4.219288 GTGAACGGAGGGACTAGAAAAGTA 59.781 45.833 0.00 0.00 41.55 2.24
567 568 4.834496 TGAACGGAGGGACTAGAAAAGTAA 59.166 41.667 0.00 0.00 41.55 2.24
568 569 5.305128 TGAACGGAGGGACTAGAAAAGTAAA 59.695 40.000 0.00 0.00 41.55 2.01
569 570 5.144692 ACGGAGGGACTAGAAAAGTAAAC 57.855 43.478 0.00 0.00 41.55 2.01
570 571 4.590222 ACGGAGGGACTAGAAAAGTAAACA 59.410 41.667 0.00 0.00 41.55 2.83
571 572 5.247792 ACGGAGGGACTAGAAAAGTAAACAT 59.752 40.000 0.00 0.00 41.55 2.71
572 573 5.811100 CGGAGGGACTAGAAAAGTAAACATC 59.189 44.000 0.00 0.00 41.55 3.06
573 574 5.811100 GGAGGGACTAGAAAAGTAAACATCG 59.189 44.000 0.00 0.00 41.55 3.84
574 575 6.356186 AGGGACTAGAAAAGTAAACATCGT 57.644 37.500 0.00 0.00 39.07 3.73
575 576 6.396450 AGGGACTAGAAAAGTAAACATCGTC 58.604 40.000 0.00 0.00 39.07 4.20
576 577 6.210984 AGGGACTAGAAAAGTAAACATCGTCT 59.789 38.462 0.00 0.00 39.07 4.18
577 578 7.395489 AGGGACTAGAAAAGTAAACATCGTCTA 59.605 37.037 0.00 0.00 39.07 2.59
578 579 7.487509 GGGACTAGAAAAGTAAACATCGTCTAC 59.512 40.741 0.00 0.00 39.07 2.59
579 580 8.242739 GGACTAGAAAAGTAAACATCGTCTACT 58.757 37.037 0.00 0.00 39.07 2.57
587 588 8.783833 AAGTAAACATCGTCTACTAGTACTCA 57.216 34.615 0.00 0.00 0.00 3.41
588 589 8.195617 AGTAAACATCGTCTACTAGTACTCAC 57.804 38.462 0.00 0.00 0.00 3.51
589 590 5.715429 AACATCGTCTACTAGTACTCACG 57.285 43.478 14.20 14.20 0.00 4.35
590 591 4.753233 ACATCGTCTACTAGTACTCACGT 58.247 43.478 17.55 0.00 0.00 4.49
591 592 5.895928 ACATCGTCTACTAGTACTCACGTA 58.104 41.667 17.55 0.00 0.00 3.57
592 593 6.333416 ACATCGTCTACTAGTACTCACGTAA 58.667 40.000 17.55 6.31 0.00 3.18
593 594 6.813649 ACATCGTCTACTAGTACTCACGTAAA 59.186 38.462 17.55 5.82 0.00 2.01
594 595 7.331934 ACATCGTCTACTAGTACTCACGTAAAA 59.668 37.037 17.55 5.57 0.00 1.52
595 596 7.834068 TCGTCTACTAGTACTCACGTAAAAT 57.166 36.000 17.55 0.00 0.00 1.82
596 597 8.926715 TCGTCTACTAGTACTCACGTAAAATA 57.073 34.615 17.55 2.59 0.00 1.40
597 598 9.366216 TCGTCTACTAGTACTCACGTAAAATAA 57.634 33.333 17.55 2.09 0.00 1.40
598 599 9.973246 CGTCTACTAGTACTCACGTAAAATAAA 57.027 33.333 0.00 0.00 0.00 1.40
602 603 8.452989 ACTAGTACTCACGTAAAATAAAACGG 57.547 34.615 0.00 0.00 43.25 4.44
603 604 6.156932 AGTACTCACGTAAAATAAAACGGC 57.843 37.500 0.00 0.00 43.25 5.68
604 605 5.928264 AGTACTCACGTAAAATAAAACGGCT 59.072 36.000 0.00 0.00 43.25 5.52
605 606 7.090173 AGTACTCACGTAAAATAAAACGGCTA 58.910 34.615 0.00 0.00 43.25 3.93
606 607 6.783892 ACTCACGTAAAATAAAACGGCTAA 57.216 33.333 0.00 0.00 43.25 3.09
607 608 7.368480 ACTCACGTAAAATAAAACGGCTAAT 57.632 32.000 0.00 0.00 43.25 1.73
608 609 7.238571 ACTCACGTAAAATAAAACGGCTAATG 58.761 34.615 0.00 0.00 43.25 1.90
609 610 6.544622 TCACGTAAAATAAAACGGCTAATGG 58.455 36.000 0.00 0.00 43.25 3.16
610 611 6.149142 TCACGTAAAATAAAACGGCTAATGGT 59.851 34.615 0.00 0.00 43.25 3.55
611 612 6.249682 CACGTAAAATAAAACGGCTAATGGTG 59.750 38.462 0.00 0.00 43.25 4.17
612 613 6.149142 ACGTAAAATAAAACGGCTAATGGTGA 59.851 34.615 0.00 0.00 43.25 4.02
613 614 6.685403 CGTAAAATAAAACGGCTAATGGTGAG 59.315 38.462 0.00 0.00 35.51 3.51
614 615 6.584185 AAAATAAAACGGCTAATGGTGAGT 57.416 33.333 0.00 0.00 0.00 3.41
615 616 6.584185 AAATAAAACGGCTAATGGTGAGTT 57.416 33.333 0.00 0.00 0.00 3.01
616 617 3.915437 AAAACGGCTAATGGTGAGTTG 57.085 42.857 0.00 0.00 0.00 3.16
617 618 2.561478 AACGGCTAATGGTGAGTTGT 57.439 45.000 0.00 0.00 0.00 3.32
618 619 2.561478 ACGGCTAATGGTGAGTTGTT 57.439 45.000 0.00 0.00 0.00 2.83
619 620 2.858745 ACGGCTAATGGTGAGTTGTTT 58.141 42.857 0.00 0.00 0.00 2.83
620 621 3.219281 ACGGCTAATGGTGAGTTGTTTT 58.781 40.909 0.00 0.00 0.00 2.43
621 622 4.391155 ACGGCTAATGGTGAGTTGTTTTA 58.609 39.130 0.00 0.00 0.00 1.52
622 623 4.822896 ACGGCTAATGGTGAGTTGTTTTAA 59.177 37.500 0.00 0.00 0.00 1.52
623 624 5.151389 CGGCTAATGGTGAGTTGTTTTAAC 58.849 41.667 0.00 0.00 0.00 2.01
624 625 5.048991 CGGCTAATGGTGAGTTGTTTTAACT 60.049 40.000 0.00 0.00 0.00 2.24
654 655 4.270008 ACTATTAACCTCCTTTGCGCAAT 58.730 39.130 25.64 9.68 0.00 3.56
658 659 1.213537 CCTCCTTTGCGCAATGGTG 59.786 57.895 38.66 35.96 37.05 4.17
862 864 0.109723 TTCCCCCTTCCACAAACTCG 59.890 55.000 0.00 0.00 0.00 4.18
885 887 2.492484 GTCCAGCCGAGAGTTCTAGAAA 59.508 50.000 6.78 0.00 0.00 2.52
887 889 2.494073 CCAGCCGAGAGTTCTAGAAACT 59.506 50.000 6.78 9.74 0.00 2.66
892 894 4.558898 GCCGAGAGTTCTAGAAACTCAACA 60.559 45.833 26.26 0.00 46.78 3.33
927 929 4.042251 GCCACAGCCTCTCTACCT 57.958 61.111 0.00 0.00 0.00 3.08
928 930 1.819905 GCCACAGCCTCTCTACCTC 59.180 63.158 0.00 0.00 0.00 3.85
934 936 1.754226 CAGCCTCTCTACCTCCACTTC 59.246 57.143 0.00 0.00 0.00 3.01
943 945 0.478507 ACCTCCACTTCCCCAACAAG 59.521 55.000 0.00 0.00 0.00 3.16
990 997 4.965858 GCGAGCTCGATCGGACCG 62.966 72.222 38.74 7.84 42.94 4.79
992 999 3.587933 GAGCTCGATCGGACCGCT 61.588 66.667 16.41 17.02 0.00 5.52
1068 1075 1.982395 CCACGAGGAGCAGTACCCA 60.982 63.158 0.00 0.00 36.89 4.51
1094 1101 4.824515 CGGCCTCCTCCTCTCGGT 62.825 72.222 0.00 0.00 0.00 4.69
1499 1512 0.528924 TCATGGTACGTCGGTCCAAG 59.471 55.000 13.09 9.81 34.80 3.61
1504 1517 0.179205 GTACGTCGGTCCAAGTCGAG 60.179 60.000 0.00 0.00 36.00 4.04
1512 1526 2.609491 CGGTCCAAGTCGAGTCAATCAA 60.609 50.000 0.00 0.00 0.00 2.57
1535 1549 1.545582 GTGCCTTGCCTGCTTATCAAA 59.454 47.619 0.00 0.00 0.00 2.69
1536 1550 2.029110 GTGCCTTGCCTGCTTATCAAAA 60.029 45.455 0.00 0.00 0.00 2.44
1564 1582 1.534959 ACCTGCTCTCTGCCTGTCA 60.535 57.895 0.00 0.00 42.00 3.58
1582 1600 1.405105 TCACTTGCTTGTTGTGCCTTC 59.595 47.619 0.00 0.00 0.00 3.46
1585 1603 2.427410 GCTTGTTGTGCCTTCGCG 60.427 61.111 0.00 0.00 38.08 5.87
1787 2226 2.742372 CAAACGCACCGAGGAGGG 60.742 66.667 0.00 0.00 46.96 4.30
1817 2273 2.370189 CTGGACTCCTTTTCTCACCACT 59.630 50.000 0.00 0.00 0.00 4.00
1845 2301 1.283793 CGACGTACACCACCGACTT 59.716 57.895 0.00 0.00 0.00 3.01
1924 2380 1.995274 TGGTGTCGGCCCACATAAT 59.005 52.632 6.43 0.00 37.06 1.28
2054 2520 1.528824 CCCATCCCATGCGTCTCTT 59.471 57.895 0.00 0.00 0.00 2.85
2080 2578 4.650377 GCTGCCCCATCCCGATCC 62.650 72.222 0.00 0.00 0.00 3.36
2142 2682 1.625818 TCTTCTCCTTCTGTGAAGCCC 59.374 52.381 2.08 0.00 41.96 5.19
2144 2684 0.832135 TCTCCTTCTGTGAAGCCCGT 60.832 55.000 2.08 0.00 0.00 5.28
2145 2685 0.035458 CTCCTTCTGTGAAGCCCGTT 59.965 55.000 2.08 0.00 0.00 4.44
2249 2810 2.302445 ACTCTCTGCTCATCACAAGCTT 59.698 45.455 0.00 0.00 40.50 3.74
2305 2879 0.394762 TTCCTCATGCCATGCTCCAC 60.395 55.000 0.00 0.00 0.00 4.02
2582 3168 2.031012 CAGGTGCTCGTGCTGGAA 59.969 61.111 11.19 0.00 40.48 3.53
2584 3170 1.148273 AGGTGCTCGTGCTGGAAAA 59.852 52.632 11.19 0.00 40.48 2.29
2789 3381 0.248743 TCACGTTCCACTCACACGAC 60.249 55.000 0.00 0.00 37.37 4.34
2848 3448 1.369091 ATTTGTCCGCTTGCGCCTAG 61.369 55.000 4.18 3.16 0.00 3.02
2870 3470 4.704057 AGAAATGTTGGGATTTCTCTCTGC 59.296 41.667 0.00 0.00 45.54 4.26
2890 3490 2.035066 GCCATCAAGTTCTTGTGCAAGT 59.965 45.455 11.17 0.00 39.38 3.16
2923 3523 1.063806 CTCTGTTCACGTGCTACAGC 58.936 55.000 30.04 12.13 39.24 4.40
3019 3619 5.179368 GCAATTAGTACAGCTCACACTTGAA 59.821 40.000 0.00 0.00 0.00 2.69
3020 3620 6.593978 CAATTAGTACAGCTCACACTTGAAC 58.406 40.000 0.00 0.00 0.00 3.18
3074 3674 1.629013 TAGCAACACGAGCGAATGAG 58.371 50.000 0.00 0.00 37.01 2.90
3075 3675 0.319900 AGCAACACGAGCGAATGAGT 60.320 50.000 0.00 0.00 37.01 3.41
3076 3676 1.067846 AGCAACACGAGCGAATGAGTA 60.068 47.619 0.00 0.00 37.01 2.59
3084 3684 5.624081 ACACGAGCGAATGAGTAATAATACG 59.376 40.000 0.00 0.00 37.11 3.06
3262 3862 3.584848 AGTTTGATACCTTCACTCCTGCT 59.415 43.478 0.00 0.00 32.84 4.24
3632 4236 5.240891 TCAAAGATGACCTCAACACAGATC 58.759 41.667 0.00 0.00 0.00 2.75
3817 4425 3.325293 TGAGCACTGTCATTTCCTCTC 57.675 47.619 0.00 0.00 0.00 3.20
3820 4428 4.467438 TGAGCACTGTCATTTCCTCTCATA 59.533 41.667 0.00 0.00 0.00 2.15
4037 4645 6.481434 AAATGCTACCTTCCTCGTATAGTT 57.519 37.500 0.00 0.00 0.00 2.24
4183 4791 3.128589 GCGGTTGGTGTGATAATGTCATT 59.871 43.478 3.06 3.06 39.48 2.57
4749 5358 3.983044 ATGTCCTTGGTAAGTCTGACC 57.017 47.619 3.76 0.00 37.49 4.02
4962 5571 7.908082 CACATTTAGTTTCGTTTTTGTCTCTCA 59.092 33.333 0.00 0.00 0.00 3.27
5149 5758 0.036010 CGCATCCTGGAAGAGTTGGT 60.036 55.000 0.00 0.00 34.07 3.67
5488 6097 8.613482 GGCTTTCTGACAAGGTATATTTCTAAC 58.387 37.037 0.00 0.00 0.00 2.34
5644 6256 5.351740 GGTGGAGAGTAAGTTCATTGCTTAC 59.648 44.000 7.01 7.01 45.05 2.34
5670 6282 4.952957 TCTGGTTTCATTTTGAACCAGACA 59.047 37.500 25.81 11.55 46.75 3.41
5671 6283 5.598005 TCTGGTTTCATTTTGAACCAGACAT 59.402 36.000 25.81 0.00 46.75 3.06
5672 6284 5.599732 TGGTTTCATTTTGAACCAGACATG 58.400 37.500 3.97 0.00 35.89 3.21
5677 6289 6.713762 TCATTTTGAACCAGACATGTTCTT 57.286 33.333 0.00 0.00 42.04 2.52
6083 6713 1.421382 CAAAACCGAGCAATGCCTTG 58.579 50.000 0.00 0.00 35.36 3.61
6152 6800 2.196229 CCCCGGATCTCGAGACCT 59.804 66.667 19.30 1.89 42.43 3.85
6184 6834 1.897398 GCACGACCGTCAACATCACC 61.897 60.000 0.00 0.00 0.00 4.02
6248 6899 1.428370 GCGATATGCACCAACGCTGA 61.428 55.000 14.92 0.00 45.45 4.26
6319 6971 4.094887 CACCATTGAAGTAAACCATCGGAG 59.905 45.833 0.00 0.00 0.00 4.63
6417 7077 2.668632 GACATGGCCGGAACCAGA 59.331 61.111 5.05 0.00 44.71 3.86
6441 7101 3.376234 CGTGAAAAGCAGATCACCATCAT 59.624 43.478 9.33 0.00 42.29 2.45
6675 7412 2.515853 TCTTCCCTATGAGCTCTGGAGA 59.484 50.000 16.19 10.76 0.00 3.71
6676 7413 3.141838 TCTTCCCTATGAGCTCTGGAGAT 59.858 47.826 16.19 1.74 0.00 2.75
6796 7533 0.030101 TTTTTCCTCAAGGCGTTGCG 59.970 50.000 14.22 8.19 33.23 4.85
6815 7552 5.054390 TGCGGAATAAAACAAATGTCTCC 57.946 39.130 0.00 0.00 0.00 3.71
6891 7628 2.817844 CCCCTTGCCACAAGTAAGTTAC 59.182 50.000 4.78 4.78 36.52 2.50
6947 7684 5.868801 CCCGTTTAATCATCAAAATTGCACT 59.131 36.000 0.00 0.00 0.00 4.40
7168 7906 8.548721 CAGAAGTCGAAACTTTACATGTTAACT 58.451 33.333 2.30 0.00 45.80 2.24
7170 7908 8.428186 AAGTCGAAACTTTACATGTTAACTCA 57.572 30.769 2.30 0.00 43.28 3.41
7261 7999 1.002069 TCCACCCTTCTGATGCCATT 58.998 50.000 0.00 0.00 0.00 3.16
7264 8002 2.022195 CACCCTTCTGATGCCATTGAG 58.978 52.381 0.00 0.00 0.00 3.02
7276 8014 3.499338 TGCCATTGAGTTTGGTTCAGAT 58.501 40.909 0.00 0.00 36.57 2.90
7303 8041 2.028930 GGTAGCCATATCCTGTTCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
7306 8044 2.894126 AGCCATATCCTGTTCTCCGTAG 59.106 50.000 0.00 0.00 0.00 3.51
7310 8048 4.523173 CCATATCCTGTTCTCCGTAGCTTA 59.477 45.833 0.00 0.00 0.00 3.09
7312 8050 2.097825 TCCTGTTCTCCGTAGCTTACC 58.902 52.381 0.00 0.00 0.00 2.85
7329 8072 1.589414 ACCTTGCTTCCTATCTGCCT 58.411 50.000 0.00 0.00 0.00 4.75
7334 8077 1.419012 TGCTTCCTATCTGCCTGATGG 59.581 52.381 0.00 0.00 36.65 3.51
7413 8170 1.605165 GGCCATGTTCCGGGTGAAA 60.605 57.895 0.00 0.00 33.94 2.69
7419 8176 0.534203 TGTTCCGGGTGAAAGTGCTC 60.534 55.000 0.00 0.00 33.94 4.26
7491 8251 1.816863 GAGTGGGGACTTCAGCGACA 61.817 60.000 0.00 0.00 0.00 4.35
7547 8307 0.742281 ACAGCCGACACTGCATCATC 60.742 55.000 0.00 0.00 41.60 2.92
7548 8308 1.520120 AGCCGACACTGCATCATCG 60.520 57.895 6.64 6.64 0.00 3.84
7549 8309 3.009140 CCGACACTGCATCATCGC 58.991 61.111 7.83 0.00 33.25 4.58
7550 8310 2.528743 CCGACACTGCATCATCGCC 61.529 63.158 7.83 0.00 33.25 5.54
7551 8311 1.810853 CGACACTGCATCATCGCCA 60.811 57.895 0.00 0.00 0.00 5.69
7552 8312 1.360931 CGACACTGCATCATCGCCAA 61.361 55.000 0.00 0.00 0.00 4.52
7596 8356 3.777106 TTGCACTCATCCAGATATCCC 57.223 47.619 0.00 0.00 0.00 3.85
7598 8358 2.636403 TGCACTCATCCAGATATCCCAG 59.364 50.000 0.00 0.00 0.00 4.45
7599 8359 2.902486 GCACTCATCCAGATATCCCAGA 59.098 50.000 0.00 0.00 0.00 3.86
7600 8360 3.326006 GCACTCATCCAGATATCCCAGAA 59.674 47.826 0.00 0.00 0.00 3.02
7714 8474 3.899052 TGCCACTGTAATACTGTACCC 57.101 47.619 2.65 0.00 0.00 3.69
7766 8526 5.576774 CACGTGTTCATACTGCAAGATAGAA 59.423 40.000 7.58 0.00 37.43 2.10
7767 8527 6.090763 CACGTGTTCATACTGCAAGATAGAAA 59.909 38.462 7.58 0.00 37.43 2.52
7768 8528 6.649141 ACGTGTTCATACTGCAAGATAGAAAA 59.351 34.615 0.00 0.00 37.43 2.29
7769 8529 7.172532 ACGTGTTCATACTGCAAGATAGAAAAA 59.827 33.333 0.00 0.00 37.43 1.94
7770 8530 7.478667 CGTGTTCATACTGCAAGATAGAAAAAC 59.521 37.037 0.00 0.00 37.43 2.43
7771 8531 8.289618 GTGTTCATACTGCAAGATAGAAAAACA 58.710 33.333 0.00 0.00 37.43 2.83
7772 8532 9.013229 TGTTCATACTGCAAGATAGAAAAACAT 57.987 29.630 0.00 0.00 37.43 2.71
7773 8533 9.282247 GTTCATACTGCAAGATAGAAAAACATG 57.718 33.333 0.00 0.00 37.43 3.21
7774 8534 8.565896 TCATACTGCAAGATAGAAAAACATGT 57.434 30.769 0.00 0.00 37.43 3.21
7775 8535 9.013229 TCATACTGCAAGATAGAAAAACATGTT 57.987 29.630 4.92 4.92 37.43 2.71
7838 8598 0.327924 ATGACGCAATGGACCAAGGA 59.672 50.000 0.00 0.00 0.00 3.36
7840 8600 0.521735 GACGCAATGGACCAAGGAAC 59.478 55.000 0.00 0.00 0.00 3.62
7841 8601 0.893727 ACGCAATGGACCAAGGAACC 60.894 55.000 0.00 0.00 0.00 3.62
7842 8602 0.893270 CGCAATGGACCAAGGAACCA 60.893 55.000 0.00 10.77 38.09 3.67
7843 8603 0.890683 GCAATGGACCAAGGAACCAG 59.109 55.000 0.00 4.82 37.12 4.00
7844 8604 0.890683 CAATGGACCAAGGAACCAGC 59.109 55.000 0.00 0.00 37.12 4.85
7845 8605 0.482446 AATGGACCAAGGAACCAGCA 59.518 50.000 0.00 0.00 37.12 4.41
7846 8606 0.706433 ATGGACCAAGGAACCAGCAT 59.294 50.000 0.00 0.00 37.12 3.79
7847 8607 0.251297 TGGACCAAGGAACCAGCATG 60.251 55.000 0.00 0.00 0.00 4.06
7877 8637 1.013596 TTCGTTCCAAGGCATATGCG 58.986 50.000 21.04 7.75 43.26 4.73
7949 8717 7.456902 ACTTAGACCCAGGAATCAACTTAGTAA 59.543 37.037 0.00 0.00 0.00 2.24
7950 8718 6.301169 AGACCCAGGAATCAACTTAGTAAG 57.699 41.667 8.41 8.41 0.00 2.34
7952 8720 6.958192 AGACCCAGGAATCAACTTAGTAAGTA 59.042 38.462 15.84 1.99 41.91 2.24
7953 8721 6.944096 ACCCAGGAATCAACTTAGTAAGTAC 58.056 40.000 15.84 5.94 41.91 2.73
7954 8722 6.729569 ACCCAGGAATCAACTTAGTAAGTACT 59.270 38.462 15.84 0.00 41.91 2.73
7956 8724 8.101419 CCCAGGAATCAACTTAGTAAGTACTTT 58.899 37.037 14.49 9.39 41.91 2.66
7957 8725 9.152595 CCAGGAATCAACTTAGTAAGTACTTTC 57.847 37.037 14.49 16.06 41.91 2.62
7961 8729 8.983307 AATCAACTTAGTAAGTACTTTCTCCG 57.017 34.615 16.98 11.96 41.91 4.63
7962 8730 7.516198 TCAACTTAGTAAGTACTTTCTCCGT 57.484 36.000 16.98 12.50 41.91 4.69
7963 8731 7.945134 TCAACTTAGTAAGTACTTTCTCCGTT 58.055 34.615 16.98 16.65 41.91 4.44
7964 8732 8.078596 TCAACTTAGTAAGTACTTTCTCCGTTC 58.921 37.037 16.98 0.00 41.91 3.95
7965 8733 6.918626 ACTTAGTAAGTACTTTCTCCGTTCC 58.081 40.000 16.98 0.00 40.69 3.62
7966 8734 6.491403 ACTTAGTAAGTACTTTCTCCGTTCCA 59.509 38.462 16.98 0.00 40.69 3.53
7967 8735 5.796424 AGTAAGTACTTTCTCCGTTCCAA 57.204 39.130 14.49 0.00 31.13 3.53
7968 8736 6.165700 AGTAAGTACTTTCTCCGTTCCAAA 57.834 37.500 14.49 0.00 31.13 3.28
7969 8737 6.585416 AGTAAGTACTTTCTCCGTTCCAAAA 58.415 36.000 14.49 0.00 31.13 2.44
7970 8738 7.222161 AGTAAGTACTTTCTCCGTTCCAAAAT 58.778 34.615 14.49 0.00 31.13 1.82
7974 8742 9.729281 AAGTACTTTCTCCGTTCCAAAATATAA 57.271 29.630 1.12 0.00 0.00 0.98
7975 8743 9.379791 AGTACTTTCTCCGTTCCAAAATATAAG 57.620 33.333 0.00 0.00 0.00 1.73
7976 8744 9.159364 GTACTTTCTCCGTTCCAAAATATAAGT 57.841 33.333 0.00 0.00 0.00 2.24
7979 8747 8.857694 TTTCTCCGTTCCAAAATATAAGTCTT 57.142 30.769 0.00 0.00 0.00 3.01
7981 8749 9.947433 TTCTCCGTTCCAAAATATAAGTCTTTA 57.053 29.630 0.00 0.00 0.00 1.85
7999 8767 9.905713 AAGTCTTTATAAAGATTGTGCTATGGA 57.094 29.630 26.46 1.72 45.83 3.41
8000 8768 9.331282 AGTCTTTATAAAGATTGTGCTATGGAC 57.669 33.333 26.46 12.43 45.83 4.02
8001 8769 9.331282 GTCTTTATAAAGATTGTGCTATGGACT 57.669 33.333 26.46 0.00 45.83 3.85
8007 8775 9.712305 ATAAAGATTGTGCTATGGACTACATAC 57.288 33.333 0.00 0.00 41.03 2.39
8008 8776 6.731292 AGATTGTGCTATGGACTACATACA 57.269 37.500 0.00 0.00 41.03 2.29
8009 8777 7.124573 AGATTGTGCTATGGACTACATACAA 57.875 36.000 0.00 0.00 38.93 2.41
8010 8778 7.564793 AGATTGTGCTATGGACTACATACAAA 58.435 34.615 0.00 0.00 38.40 2.83
8011 8779 7.712639 AGATTGTGCTATGGACTACATACAAAG 59.287 37.037 0.00 0.00 38.40 2.77
8012 8780 5.116180 TGTGCTATGGACTACATACAAAGC 58.884 41.667 0.00 0.00 41.03 3.51
8013 8781 4.209288 GTGCTATGGACTACATACAAAGCG 59.791 45.833 0.00 0.00 39.30 4.68
8014 8782 4.098807 TGCTATGGACTACATACAAAGCGA 59.901 41.667 0.00 0.00 39.30 4.93
8015 8783 5.047847 GCTATGGACTACATACAAAGCGAA 58.952 41.667 0.00 0.00 41.03 4.70
8016 8784 5.522460 GCTATGGACTACATACAAAGCGAAA 59.478 40.000 0.00 0.00 41.03 3.46
8017 8785 6.202954 GCTATGGACTACATACAAAGCGAAAT 59.797 38.462 0.00 0.00 41.03 2.17
8018 8786 5.794687 TGGACTACATACAAAGCGAAATG 57.205 39.130 0.00 0.00 0.00 2.32
8019 8787 5.483811 TGGACTACATACAAAGCGAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
8020 8788 5.580691 TGGACTACATACAAAGCGAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
8021 8789 5.581085 GGACTACATACAAAGCGAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
8023 8791 5.932303 ACTACATACAAAGCGAAATGAGTGT 59.068 36.000 0.00 0.00 0.00 3.55
8024 8792 7.094631 ACTACATACAAAGCGAAATGAGTGTA 58.905 34.615 0.00 0.00 0.00 2.90
8026 8794 7.005062 ACATACAAAGCGAAATGAGTGTATC 57.995 36.000 0.00 0.00 31.51 2.24
8027 8795 6.818644 ACATACAAAGCGAAATGAGTGTATCT 59.181 34.615 0.00 0.00 31.51 1.98
8028 8796 7.979537 ACATACAAAGCGAAATGAGTGTATCTA 59.020 33.333 0.00 0.00 31.51 1.98
8029 8797 8.982685 CATACAAAGCGAAATGAGTGTATCTAT 58.017 33.333 0.00 0.00 31.51 1.98
8032 8800 8.198109 ACAAAGCGAAATGAGTGTATCTATACT 58.802 33.333 2.07 0.00 34.41 2.12
8033 8801 8.695284 CAAAGCGAAATGAGTGTATCTATACTC 58.305 37.037 7.05 7.05 42.57 2.59
8034 8802 7.753309 AGCGAAATGAGTGTATCTATACTCT 57.247 36.000 13.19 7.49 42.66 3.24
8035 8803 8.850007 AGCGAAATGAGTGTATCTATACTCTA 57.150 34.615 13.19 3.48 42.66 2.43
8037 8805 9.894783 GCGAAATGAGTGTATCTATACTCTAAA 57.105 33.333 13.19 2.14 42.66 1.85
8066 8834 9.431887 ACATTTATATACATCCGTATGTGGTTC 57.568 33.333 3.56 0.00 45.99 3.62
8067 8835 9.430623 CATTTATATACATCCGTATGTGGTTCA 57.569 33.333 3.56 0.00 45.99 3.18
8071 8839 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
8072 8840 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
8074 8842 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
8075 8843 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
8076 8844 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
8078 8846 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
8080 8848 7.065803 CCGTATGTGGTTCATAGTGAAATCTTT 59.934 37.037 0.00 0.00 38.22 2.52
8081 8849 9.093970 CGTATGTGGTTCATAGTGAAATCTTTA 57.906 33.333 0.00 0.00 38.22 1.85
8107 8875 7.668525 AAAGACTTGTATTTAGAAACGGAGG 57.331 36.000 0.00 0.00 0.00 4.30
8108 8876 5.731591 AGACTTGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
8109 8877 5.482878 AGACTTGTATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
8111 8879 5.247792 ACTTGTATTTAGAAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
8117 8885 6.616237 TTTAGAAACGGAGGGAGTAGAAAT 57.384 37.500 0.00 0.00 0.00 2.17
8126 9290 6.837568 ACGGAGGGAGTAGAAATAAGTAATCA 59.162 38.462 0.00 0.00 0.00 2.57
8156 9320 2.434336 TGAACCTTAGGATCATGACGGG 59.566 50.000 7.15 0.00 29.57 5.28
8175 9339 1.514087 GGATCCAAGACACGCGGTA 59.486 57.895 12.47 0.00 0.00 4.02
8186 9350 1.006571 ACGCGGTAGTGTGGTCTTG 60.007 57.895 12.47 0.00 40.00 3.02
8347 9511 2.968206 GGTACGCCGAGTGAGGTT 59.032 61.111 0.00 0.00 0.00 3.50
8421 9587 0.264955 CCCTAGCCAAGGTCTCCCTA 59.735 60.000 2.24 0.00 44.90 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.860648 TTTGAGGGGGAGTAATCTTTCTT 57.139 39.130 0.00 0.00 0.00 2.52
1 2 5.860648 TTTTGAGGGGGAGTAATCTTTCT 57.139 39.130 0.00 0.00 0.00 2.52
2 3 6.246163 TCTTTTTGAGGGGGAGTAATCTTTC 58.754 40.000 0.00 0.00 0.00 2.62
3 4 6.214177 TCTTTTTGAGGGGGAGTAATCTTT 57.786 37.500 0.00 0.00 0.00 2.52
4 5 5.860648 TCTTTTTGAGGGGGAGTAATCTT 57.139 39.130 0.00 0.00 0.00 2.40
5 6 5.860648 TTCTTTTTGAGGGGGAGTAATCT 57.139 39.130 0.00 0.00 0.00 2.40
6 7 6.719829 TCTTTTCTTTTTGAGGGGGAGTAATC 59.280 38.462 0.00 0.00 0.00 1.75
7 8 6.620429 TCTTTTCTTTTTGAGGGGGAGTAAT 58.380 36.000 0.00 0.00 0.00 1.89
10 11 4.536295 TCTTTTCTTTTTGAGGGGGAGT 57.464 40.909 0.00 0.00 0.00 3.85
11 12 4.649218 TGTTCTTTTCTTTTTGAGGGGGAG 59.351 41.667 0.00 0.00 0.00 4.30
12 13 4.615513 TGTTCTTTTCTTTTTGAGGGGGA 58.384 39.130 0.00 0.00 0.00 4.81
13 14 5.351948 TTGTTCTTTTCTTTTTGAGGGGG 57.648 39.130 0.00 0.00 0.00 5.40
14 15 7.102993 TCTTTTGTTCTTTTCTTTTTGAGGGG 58.897 34.615 0.00 0.00 0.00 4.79
15 16 8.722480 ATCTTTTGTTCTTTTCTTTTTGAGGG 57.278 30.769 0.00 0.00 0.00 4.30
33 34 9.712305 CCAGGTATAGTATGGAGTAATCTTTTG 57.288 37.037 0.00 0.00 36.09 2.44
34 35 8.376270 GCCAGGTATAGTATGGAGTAATCTTTT 58.624 37.037 2.64 0.00 36.09 2.27
35 36 7.038231 GGCCAGGTATAGTATGGAGTAATCTTT 60.038 40.741 0.00 0.00 36.09 2.52
36 37 6.440965 GGCCAGGTATAGTATGGAGTAATCTT 59.559 42.308 0.00 0.00 36.09 2.40
37 38 5.958987 GGCCAGGTATAGTATGGAGTAATCT 59.041 44.000 0.00 0.00 36.09 2.40
38 39 5.720041 TGGCCAGGTATAGTATGGAGTAATC 59.280 44.000 0.00 0.00 36.09 1.75
39 40 5.661565 TGGCCAGGTATAGTATGGAGTAAT 58.338 41.667 0.00 0.00 36.09 1.89
40 41 5.082633 TGGCCAGGTATAGTATGGAGTAA 57.917 43.478 0.00 0.00 36.09 2.24
41 42 4.752621 TGGCCAGGTATAGTATGGAGTA 57.247 45.455 0.00 0.00 36.09 2.59
42 43 3.630625 TGGCCAGGTATAGTATGGAGT 57.369 47.619 0.00 0.00 36.09 3.85
43 44 4.161189 CAGATGGCCAGGTATAGTATGGAG 59.839 50.000 13.05 0.00 36.09 3.86
44 45 4.096681 CAGATGGCCAGGTATAGTATGGA 58.903 47.826 13.05 0.00 36.09 3.41
45 46 3.369892 GCAGATGGCCAGGTATAGTATGG 60.370 52.174 13.05 0.00 36.11 2.74
46 47 3.866651 GCAGATGGCCAGGTATAGTATG 58.133 50.000 13.05 0.27 36.11 2.39
77 78 2.183555 GTCACGGGCTTCGGTAGG 59.816 66.667 5.17 0.00 44.45 3.18
78 79 1.153823 CTGTCACGGGCTTCGGTAG 60.154 63.158 5.17 0.00 44.45 3.18
79 80 1.180456 TTCTGTCACGGGCTTCGGTA 61.180 55.000 5.17 0.00 44.45 4.02
80 81 2.035237 TTTCTGTCACGGGCTTCGGT 62.035 55.000 5.17 0.00 44.45 4.69
81 82 0.882927 TTTTCTGTCACGGGCTTCGG 60.883 55.000 5.17 0.00 44.45 4.30
82 83 0.234884 GTTTTCTGTCACGGGCTTCG 59.765 55.000 0.00 0.00 45.88 3.79
83 84 0.591659 GGTTTTCTGTCACGGGCTTC 59.408 55.000 0.00 0.00 0.00 3.86
84 85 0.182775 AGGTTTTCTGTCACGGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
85 86 1.002087 CTAGGTTTTCTGTCACGGGCT 59.998 52.381 0.00 0.00 0.00 5.19
86 87 1.439679 CTAGGTTTTCTGTCACGGGC 58.560 55.000 0.00 0.00 0.00 6.13
87 88 1.944430 GCCTAGGTTTTCTGTCACGGG 60.944 57.143 11.31 0.00 0.00 5.28
88 89 1.270625 TGCCTAGGTTTTCTGTCACGG 60.271 52.381 11.31 0.00 0.00 4.94
89 90 1.798813 GTGCCTAGGTTTTCTGTCACG 59.201 52.381 11.31 0.00 0.00 4.35
90 91 1.798813 CGTGCCTAGGTTTTCTGTCAC 59.201 52.381 11.31 6.25 0.00 3.67
91 92 1.689813 TCGTGCCTAGGTTTTCTGTCA 59.310 47.619 11.31 0.00 0.00 3.58
92 93 2.338500 CTCGTGCCTAGGTTTTCTGTC 58.662 52.381 11.31 0.00 0.00 3.51
93 94 1.608283 GCTCGTGCCTAGGTTTTCTGT 60.608 52.381 11.31 0.00 0.00 3.41
94 95 1.079503 GCTCGTGCCTAGGTTTTCTG 58.920 55.000 11.31 0.00 0.00 3.02
95 96 3.534721 GCTCGTGCCTAGGTTTTCT 57.465 52.632 11.31 0.00 0.00 2.52
128 129 1.506262 CAAAAATCAGGCCCGACGG 59.494 57.895 6.99 6.99 0.00 4.79
129 130 1.506262 CCAAAAATCAGGCCCGACG 59.494 57.895 0.00 0.00 0.00 5.12
130 131 1.890174 CCCAAAAATCAGGCCCGAC 59.110 57.895 0.00 0.00 0.00 4.79
131 132 1.981853 GCCCAAAAATCAGGCCCGA 60.982 57.895 0.00 0.00 41.00 5.14
132 133 2.578664 GCCCAAAAATCAGGCCCG 59.421 61.111 0.00 0.00 41.00 6.13
135 136 0.036105 CTTGGGCCCAAAAATCAGGC 60.036 55.000 36.16 0.00 46.37 4.85
136 137 0.036105 GCTTGGGCCCAAAAATCAGG 60.036 55.000 36.16 23.64 35.33 3.86
137 138 3.538379 GCTTGGGCCCAAAAATCAG 57.462 52.632 36.16 24.77 35.33 2.90
154 155 3.905437 TAACACTTTCGGGCCGGGC 62.905 63.158 27.98 22.00 0.00 6.13
155 156 0.890090 TTTAACACTTTCGGGCCGGG 60.890 55.000 27.98 18.37 0.00 5.73
156 157 0.519961 CTTTAACACTTTCGGGCCGG 59.480 55.000 27.98 13.02 0.00 6.13
157 158 0.109919 GCTTTAACACTTTCGGGCCG 60.110 55.000 22.51 22.51 0.00 6.13
158 159 0.242825 GGCTTTAACACTTTCGGGCC 59.757 55.000 0.00 0.00 0.00 5.80
159 160 0.242825 GGGCTTTAACACTTTCGGGC 59.757 55.000 0.00 0.00 0.00 6.13
160 161 0.519961 CGGGCTTTAACACTTTCGGG 59.480 55.000 0.00 0.00 0.00 5.14
161 162 1.196127 GACGGGCTTTAACACTTTCGG 59.804 52.381 0.00 0.00 0.00 4.30
162 163 1.136446 CGACGGGCTTTAACACTTTCG 60.136 52.381 0.00 0.00 0.00 3.46
163 164 1.196127 CCGACGGGCTTTAACACTTTC 59.804 52.381 5.81 0.00 0.00 2.62
164 165 1.232119 CCGACGGGCTTTAACACTTT 58.768 50.000 5.81 0.00 0.00 2.66
165 166 0.604511 CCCGACGGGCTTTAACACTT 60.605 55.000 22.37 0.00 35.35 3.16
166 167 1.004200 CCCGACGGGCTTTAACACT 60.004 57.895 22.37 0.00 35.35 3.55
167 168 3.569902 CCCGACGGGCTTTAACAC 58.430 61.111 22.37 0.00 35.35 3.32
198 199 0.107165 ATTTACTGAAGAGGCCCGGC 60.107 55.000 0.00 0.00 0.00 6.13
199 200 1.806623 CGATTTACTGAAGAGGCCCGG 60.807 57.143 0.00 0.00 0.00 5.73
200 201 1.134788 ACGATTTACTGAAGAGGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
201 202 2.093658 TCACGATTTACTGAAGAGGCCC 60.094 50.000 0.00 0.00 0.00 5.80
202 203 3.247006 TCACGATTTACTGAAGAGGCC 57.753 47.619 0.00 0.00 0.00 5.19
203 204 5.049680 TGTTTTCACGATTTACTGAAGAGGC 60.050 40.000 0.00 0.00 0.00 4.70
204 205 6.202954 ACTGTTTTCACGATTTACTGAAGAGG 59.797 38.462 0.00 0.00 0.00 3.69
205 206 7.065894 CACTGTTTTCACGATTTACTGAAGAG 58.934 38.462 0.00 0.00 0.00 2.85
206 207 6.018262 CCACTGTTTTCACGATTTACTGAAGA 60.018 38.462 0.00 0.00 0.00 2.87
207 208 6.136071 CCACTGTTTTCACGATTTACTGAAG 58.864 40.000 0.00 0.00 0.00 3.02
208 209 5.008217 CCCACTGTTTTCACGATTTACTGAA 59.992 40.000 0.00 0.00 0.00 3.02
209 210 4.513692 CCCACTGTTTTCACGATTTACTGA 59.486 41.667 0.00 0.00 0.00 3.41
210 211 4.783242 CCCACTGTTTTCACGATTTACTG 58.217 43.478 0.00 0.00 0.00 2.74
211 212 3.252458 GCCCACTGTTTTCACGATTTACT 59.748 43.478 0.00 0.00 0.00 2.24
212 213 3.561503 GCCCACTGTTTTCACGATTTAC 58.438 45.455 0.00 0.00 0.00 2.01
213 214 2.554893 GGCCCACTGTTTTCACGATTTA 59.445 45.455 0.00 0.00 0.00 1.40
214 215 1.339929 GGCCCACTGTTTTCACGATTT 59.660 47.619 0.00 0.00 0.00 2.17
215 216 0.958822 GGCCCACTGTTTTCACGATT 59.041 50.000 0.00 0.00 0.00 3.34
216 217 0.893727 GGGCCCACTGTTTTCACGAT 60.894 55.000 19.95 0.00 0.00 3.73
217 218 1.527380 GGGCCCACTGTTTTCACGA 60.527 57.895 19.95 0.00 0.00 4.35
218 219 2.903547 CGGGCCCACTGTTTTCACG 61.904 63.158 24.92 0.00 0.00 4.35
219 220 1.515521 CTCGGGCCCACTGTTTTCAC 61.516 60.000 24.92 0.00 0.00 3.18
220 221 1.228124 CTCGGGCCCACTGTTTTCA 60.228 57.895 24.92 0.00 0.00 2.69
221 222 2.626780 GCTCGGGCCCACTGTTTTC 61.627 63.158 24.92 0.00 0.00 2.29
222 223 2.597510 GCTCGGGCCCACTGTTTT 60.598 61.111 24.92 0.00 0.00 2.43
249 250 3.432890 GGGTCTAGATTTTGAGCCTGAGG 60.433 52.174 8.36 0.00 44.68 3.86
250 251 3.739519 CGGGTCTAGATTTTGAGCCTGAG 60.740 52.174 12.67 0.00 45.57 3.35
251 252 2.168521 CGGGTCTAGATTTTGAGCCTGA 59.831 50.000 12.67 0.00 45.57 3.86
252 253 2.168521 TCGGGTCTAGATTTTGAGCCTG 59.831 50.000 12.67 7.54 45.57 4.85
253 254 2.432510 CTCGGGTCTAGATTTTGAGCCT 59.567 50.000 12.67 0.00 45.57 4.58
254 255 2.827652 CTCGGGTCTAGATTTTGAGCC 58.172 52.381 5.95 5.95 44.65 4.70
255 256 2.205911 GCTCGGGTCTAGATTTTGAGC 58.794 52.381 17.61 17.61 40.31 4.26
256 257 2.483889 GGGCTCGGGTCTAGATTTTGAG 60.484 54.545 0.00 2.99 0.00 3.02
257 258 1.485066 GGGCTCGGGTCTAGATTTTGA 59.515 52.381 0.00 0.00 0.00 2.69
258 259 1.806623 CGGGCTCGGGTCTAGATTTTG 60.807 57.143 0.00 0.00 0.00 2.44
259 260 0.464452 CGGGCTCGGGTCTAGATTTT 59.536 55.000 0.00 0.00 0.00 1.82
260 261 2.125178 CGGGCTCGGGTCTAGATTT 58.875 57.895 0.00 0.00 0.00 2.17
261 262 3.857764 CGGGCTCGGGTCTAGATT 58.142 61.111 0.00 0.00 0.00 2.40
319 320 4.894896 CCATTGGTAGCCCGGCCC 62.895 72.222 5.55 1.17 0.00 5.80
326 327 0.837272 TAGACCTGGCCATTGGTAGC 59.163 55.000 16.33 5.79 36.59 3.58
327 328 2.103263 GAGTAGACCTGGCCATTGGTAG 59.897 54.545 16.33 0.00 36.59 3.18
328 329 2.116238 GAGTAGACCTGGCCATTGGTA 58.884 52.381 16.33 0.00 36.59 3.25
329 330 0.912486 GAGTAGACCTGGCCATTGGT 59.088 55.000 16.31 16.31 39.60 3.67
330 331 0.181350 GGAGTAGACCTGGCCATTGG 59.819 60.000 5.51 7.92 0.00 3.16
331 332 0.911769 TGGAGTAGACCTGGCCATTG 59.088 55.000 5.51 2.75 0.00 2.82
332 333 1.492176 CATGGAGTAGACCTGGCCATT 59.508 52.381 5.51 0.00 37.24 3.16
333 334 1.135094 CATGGAGTAGACCTGGCCAT 58.865 55.000 5.51 0.00 39.81 4.40
334 335 1.626356 GCATGGAGTAGACCTGGCCA 61.626 60.000 4.71 4.71 0.00 5.36
335 336 1.147153 GCATGGAGTAGACCTGGCC 59.853 63.158 0.00 0.00 0.00 5.36
336 337 0.179062 CAGCATGGAGTAGACCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
337 338 0.179062 GCAGCATGGAGTAGACCTGG 60.179 60.000 0.00 0.00 35.86 4.45
338 339 0.538584 TGCAGCATGGAGTAGACCTG 59.461 55.000 0.00 0.00 35.86 4.00
339 340 1.140452 CATGCAGCATGGAGTAGACCT 59.860 52.381 25.63 0.00 42.42 3.85
340 341 1.590932 CATGCAGCATGGAGTAGACC 58.409 55.000 25.63 0.00 42.42 3.85
349 350 1.298602 TACGCTAACCATGCAGCATG 58.701 50.000 26.25 26.25 41.10 4.06
350 351 1.670811 GTTACGCTAACCATGCAGCAT 59.329 47.619 0.52 0.52 37.66 3.79
351 352 1.083489 GTTACGCTAACCATGCAGCA 58.917 50.000 0.00 0.00 37.66 4.41
352 353 1.062587 CAGTTACGCTAACCATGCAGC 59.937 52.381 0.00 2.93 39.47 5.25
353 354 2.616960 TCAGTTACGCTAACCATGCAG 58.383 47.619 0.00 0.00 39.47 4.41
354 355 2.753055 TCAGTTACGCTAACCATGCA 57.247 45.000 0.00 0.00 39.47 3.96
355 356 3.242739 CCATTCAGTTACGCTAACCATGC 60.243 47.826 0.00 0.00 39.47 4.06
356 357 4.188462 TCCATTCAGTTACGCTAACCATG 58.812 43.478 4.85 0.00 39.47 3.66
357 358 4.442706 CTCCATTCAGTTACGCTAACCAT 58.557 43.478 4.85 0.00 39.47 3.55
358 359 3.369052 CCTCCATTCAGTTACGCTAACCA 60.369 47.826 4.85 0.00 39.47 3.67
359 360 3.118884 TCCTCCATTCAGTTACGCTAACC 60.119 47.826 4.85 0.00 39.47 2.85
360 361 4.119442 TCCTCCATTCAGTTACGCTAAC 57.881 45.455 0.00 0.00 38.94 2.34
361 362 4.811969 TTCCTCCATTCAGTTACGCTAA 57.188 40.909 0.00 0.00 0.00 3.09
362 363 4.464951 TCTTTCCTCCATTCAGTTACGCTA 59.535 41.667 0.00 0.00 0.00 4.26
363 364 3.260884 TCTTTCCTCCATTCAGTTACGCT 59.739 43.478 0.00 0.00 0.00 5.07
364 365 3.371285 GTCTTTCCTCCATTCAGTTACGC 59.629 47.826 0.00 0.00 0.00 4.42
365 366 4.566004 TGTCTTTCCTCCATTCAGTTACG 58.434 43.478 0.00 0.00 0.00 3.18
366 367 6.486993 AGTTTGTCTTTCCTCCATTCAGTTAC 59.513 38.462 0.00 0.00 0.00 2.50
367 368 6.601332 AGTTTGTCTTTCCTCCATTCAGTTA 58.399 36.000 0.00 0.00 0.00 2.24
368 369 5.449553 AGTTTGTCTTTCCTCCATTCAGTT 58.550 37.500 0.00 0.00 0.00 3.16
369 370 5.053978 AGTTTGTCTTTCCTCCATTCAGT 57.946 39.130 0.00 0.00 0.00 3.41
370 371 4.457257 GGAGTTTGTCTTTCCTCCATTCAG 59.543 45.833 0.00 0.00 42.51 3.02
371 372 4.141274 TGGAGTTTGTCTTTCCTCCATTCA 60.141 41.667 3.20 0.00 46.45 2.57
372 373 4.398319 TGGAGTTTGTCTTTCCTCCATTC 58.602 43.478 3.20 0.00 46.45 2.67
373 374 4.453480 TGGAGTTTGTCTTTCCTCCATT 57.547 40.909 3.20 0.00 46.45 3.16
376 377 3.493767 ACTGGAGTTTGTCTTTCCTCC 57.506 47.619 0.00 0.00 43.13 4.30
377 378 3.003793 GCAACTGGAGTTTGTCTTTCCTC 59.996 47.826 0.00 0.00 35.83 3.71
378 379 2.952310 GCAACTGGAGTTTGTCTTTCCT 59.048 45.455 0.00 0.00 35.83 3.36
379 380 2.687935 TGCAACTGGAGTTTGTCTTTCC 59.312 45.455 0.00 0.00 35.83 3.13
380 381 4.370364 TTGCAACTGGAGTTTGTCTTTC 57.630 40.909 0.00 0.00 35.83 2.62
381 382 4.021544 TGTTTGCAACTGGAGTTTGTCTTT 60.022 37.500 0.00 0.00 35.83 2.52
382 383 3.509575 TGTTTGCAACTGGAGTTTGTCTT 59.490 39.130 0.00 0.00 35.83 3.01
383 384 3.088532 TGTTTGCAACTGGAGTTTGTCT 58.911 40.909 0.00 0.00 35.83 3.41
384 385 3.179048 GTGTTTGCAACTGGAGTTTGTC 58.821 45.455 0.00 0.00 35.83 3.18
385 386 2.560542 TGTGTTTGCAACTGGAGTTTGT 59.439 40.909 0.00 0.00 35.83 2.83
386 387 3.229276 TGTGTTTGCAACTGGAGTTTG 57.771 42.857 0.00 0.00 35.83 2.93
387 388 3.446873 TCATGTGTTTGCAACTGGAGTTT 59.553 39.130 0.00 0.00 35.83 2.66
388 389 3.023119 TCATGTGTTTGCAACTGGAGTT 58.977 40.909 0.00 0.00 39.12 3.01
389 390 2.358898 GTCATGTGTTTGCAACTGGAGT 59.641 45.455 0.00 0.00 0.00 3.85
390 391 2.287788 GGTCATGTGTTTGCAACTGGAG 60.288 50.000 0.00 0.00 0.00 3.86
391 392 1.680735 GGTCATGTGTTTGCAACTGGA 59.319 47.619 0.00 0.00 0.00 3.86
392 393 1.682854 AGGTCATGTGTTTGCAACTGG 59.317 47.619 0.00 0.00 0.00 4.00
393 394 2.544277 CCAGGTCATGTGTTTGCAACTG 60.544 50.000 0.00 0.00 0.00 3.16
394 395 1.682854 CCAGGTCATGTGTTTGCAACT 59.317 47.619 0.00 0.00 0.00 3.16
395 396 1.269726 CCCAGGTCATGTGTTTGCAAC 60.270 52.381 0.00 0.00 0.00 4.17
396 397 1.039068 CCCAGGTCATGTGTTTGCAA 58.961 50.000 0.00 0.00 0.00 4.08
397 398 0.184692 TCCCAGGTCATGTGTTTGCA 59.815 50.000 0.00 0.00 0.00 4.08
398 399 1.549203 ATCCCAGGTCATGTGTTTGC 58.451 50.000 0.00 0.00 0.00 3.68
399 400 4.379394 CGTTAATCCCAGGTCATGTGTTTG 60.379 45.833 0.00 0.00 0.00 2.93
400 401 3.756434 CGTTAATCCCAGGTCATGTGTTT 59.244 43.478 0.00 0.00 0.00 2.83
401 402 3.008594 TCGTTAATCCCAGGTCATGTGTT 59.991 43.478 0.00 0.00 0.00 3.32
402 403 2.569853 TCGTTAATCCCAGGTCATGTGT 59.430 45.455 0.00 0.00 0.00 3.72
403 404 3.260475 TCGTTAATCCCAGGTCATGTG 57.740 47.619 0.00 0.00 0.00 3.21
404 405 3.992943 TTCGTTAATCCCAGGTCATGT 57.007 42.857 0.00 0.00 0.00 3.21
405 406 5.356751 TCATTTTCGTTAATCCCAGGTCATG 59.643 40.000 0.00 0.00 0.00 3.07
406 407 5.505780 TCATTTTCGTTAATCCCAGGTCAT 58.494 37.500 0.00 0.00 0.00 3.06
407 408 4.912586 TCATTTTCGTTAATCCCAGGTCA 58.087 39.130 0.00 0.00 0.00 4.02
408 409 5.890424 TTCATTTTCGTTAATCCCAGGTC 57.110 39.130 0.00 0.00 0.00 3.85
409 410 6.658188 TTTTCATTTTCGTTAATCCCAGGT 57.342 33.333 0.00 0.00 0.00 4.00
410 411 9.248291 CATATTTTCATTTTCGTTAATCCCAGG 57.752 33.333 0.00 0.00 0.00 4.45
419 420 9.239002 TCGTTGTTTCATATTTTCATTTTCGTT 57.761 25.926 0.00 0.00 0.00 3.85
420 421 8.789881 TCGTTGTTTCATATTTTCATTTTCGT 57.210 26.923 0.00 0.00 0.00 3.85
424 425 9.810231 GCATTTCGTTGTTTCATATTTTCATTT 57.190 25.926 0.00 0.00 0.00 2.32
425 426 8.986847 TGCATTTCGTTGTTTCATATTTTCATT 58.013 25.926 0.00 0.00 0.00 2.57
426 427 8.531622 TGCATTTCGTTGTTTCATATTTTCAT 57.468 26.923 0.00 0.00 0.00 2.57
427 428 7.936950 TGCATTTCGTTGTTTCATATTTTCA 57.063 28.000 0.00 0.00 0.00 2.69
428 429 8.487176 AGTTGCATTTCGTTGTTTCATATTTTC 58.513 29.630 0.00 0.00 0.00 2.29
429 430 8.364129 AGTTGCATTTCGTTGTTTCATATTTT 57.636 26.923 0.00 0.00 0.00 1.82
430 431 7.945033 AGTTGCATTTCGTTGTTTCATATTT 57.055 28.000 0.00 0.00 0.00 1.40
431 432 7.945033 AAGTTGCATTTCGTTGTTTCATATT 57.055 28.000 0.00 0.00 0.00 1.28
432 433 7.945033 AAAGTTGCATTTCGTTGTTTCATAT 57.055 28.000 0.00 0.00 0.00 1.78
433 434 7.763172 AAAAGTTGCATTTCGTTGTTTCATA 57.237 28.000 0.00 0.00 0.00 2.15
434 435 6.660887 AAAAGTTGCATTTCGTTGTTTCAT 57.339 29.167 0.00 0.00 0.00 2.57
435 436 6.473397 AAAAAGTTGCATTTCGTTGTTTCA 57.527 29.167 0.00 0.00 0.00 2.69
483 484 9.720769 CTTACATTATGGGACGAAGGTAATAAT 57.279 33.333 0.00 0.00 34.37 1.28
484 485 8.926374 TCTTACATTATGGGACGAAGGTAATAA 58.074 33.333 0.00 0.00 34.37 1.40
485 486 8.362639 GTCTTACATTATGGGACGAAGGTAATA 58.637 37.037 0.00 0.00 34.37 0.98
486 487 7.147620 TGTCTTACATTATGGGACGAAGGTAAT 60.148 37.037 0.00 0.00 34.37 1.89
487 488 6.154877 TGTCTTACATTATGGGACGAAGGTAA 59.845 38.462 0.00 0.00 33.96 2.85
488 489 5.657745 TGTCTTACATTATGGGACGAAGGTA 59.342 40.000 0.00 0.00 0.00 3.08
489 490 4.468510 TGTCTTACATTATGGGACGAAGGT 59.531 41.667 0.00 0.00 0.00 3.50
490 491 5.018539 TGTCTTACATTATGGGACGAAGG 57.981 43.478 0.00 0.00 0.00 3.46
503 504 7.042797 AGTGAACTGCAAAAATGTCTTACAT 57.957 32.000 0.00 0.00 41.31 2.29
504 505 6.449635 AGTGAACTGCAAAAATGTCTTACA 57.550 33.333 0.00 0.00 0.00 2.41
505 506 7.755582 AAAGTGAACTGCAAAAATGTCTTAC 57.244 32.000 0.00 0.00 0.00 2.34
506 507 9.862371 TTTAAAGTGAACTGCAAAAATGTCTTA 57.138 25.926 0.00 0.00 0.00 2.10
507 508 8.655970 GTTTAAAGTGAACTGCAAAAATGTCTT 58.344 29.630 0.00 0.00 0.00 3.01
508 509 8.034804 AGTTTAAAGTGAACTGCAAAAATGTCT 58.965 29.630 0.00 0.00 36.08 3.41
509 510 8.185003 AGTTTAAAGTGAACTGCAAAAATGTC 57.815 30.769 0.00 0.00 36.08 3.06
510 511 8.546597 AAGTTTAAAGTGAACTGCAAAAATGT 57.453 26.923 0.00 0.00 37.41 2.71
511 512 7.840797 CGAAGTTTAAAGTGAACTGCAAAAATG 59.159 33.333 0.00 0.00 37.41 2.32
512 513 7.757624 TCGAAGTTTAAAGTGAACTGCAAAAAT 59.242 29.630 0.00 0.00 37.41 1.82
513 514 7.085116 TCGAAGTTTAAAGTGAACTGCAAAAA 58.915 30.769 0.00 0.00 37.41 1.94
514 515 6.613233 TCGAAGTTTAAAGTGAACTGCAAAA 58.387 32.000 0.00 0.00 37.41 2.44
515 516 6.184580 TCGAAGTTTAAAGTGAACTGCAAA 57.815 33.333 0.00 0.00 37.41 3.68
516 517 5.804692 TCGAAGTTTAAAGTGAACTGCAA 57.195 34.783 0.00 0.00 37.41 4.08
517 518 5.804692 TTCGAAGTTTAAAGTGAACTGCA 57.195 34.783 0.00 0.00 37.41 4.41
518 519 6.908588 GTTTTCGAAGTTTAAAGTGAACTGC 58.091 36.000 0.00 0.00 37.41 4.40
537 538 0.863799 GTCCCTCCGTTCACGTTTTC 59.136 55.000 0.00 0.00 37.74 2.29
538 539 0.466963 AGTCCCTCCGTTCACGTTTT 59.533 50.000 0.00 0.00 37.74 2.43
539 540 1.271656 CTAGTCCCTCCGTTCACGTTT 59.728 52.381 0.00 0.00 37.74 3.60
540 541 0.886563 CTAGTCCCTCCGTTCACGTT 59.113 55.000 0.00 0.00 37.74 3.99
541 542 0.037303 TCTAGTCCCTCCGTTCACGT 59.963 55.000 0.00 0.00 37.74 4.49
542 543 1.171308 TTCTAGTCCCTCCGTTCACG 58.829 55.000 0.00 0.00 39.44 4.35
543 544 3.006644 ACTTTTCTAGTCCCTCCGTTCAC 59.993 47.826 0.00 0.00 28.23 3.18
544 545 3.236896 ACTTTTCTAGTCCCTCCGTTCA 58.763 45.455 0.00 0.00 28.23 3.18
545 546 3.957591 ACTTTTCTAGTCCCTCCGTTC 57.042 47.619 0.00 0.00 28.23 3.95
546 547 5.070847 TGTTTACTTTTCTAGTCCCTCCGTT 59.929 40.000 0.00 0.00 38.33 4.44
547 548 4.590222 TGTTTACTTTTCTAGTCCCTCCGT 59.410 41.667 0.00 0.00 38.33 4.69
548 549 5.143376 TGTTTACTTTTCTAGTCCCTCCG 57.857 43.478 0.00 0.00 38.33 4.63
549 550 5.811100 CGATGTTTACTTTTCTAGTCCCTCC 59.189 44.000 0.00 0.00 38.33 4.30
550 551 6.396450 ACGATGTTTACTTTTCTAGTCCCTC 58.604 40.000 0.00 0.00 38.33 4.30
551 552 6.210984 AGACGATGTTTACTTTTCTAGTCCCT 59.789 38.462 0.00 0.00 38.33 4.20
552 553 6.396450 AGACGATGTTTACTTTTCTAGTCCC 58.604 40.000 0.00 0.00 38.33 4.46
553 554 8.242739 AGTAGACGATGTTTACTTTTCTAGTCC 58.757 37.037 0.00 0.00 38.33 3.85
561 562 9.224267 TGAGTACTAGTAGACGATGTTTACTTT 57.776 33.333 1.87 0.00 35.55 2.66
562 563 8.663911 GTGAGTACTAGTAGACGATGTTTACTT 58.336 37.037 1.87 0.00 35.55 2.24
563 564 7.009999 CGTGAGTACTAGTAGACGATGTTTACT 59.990 40.741 17.96 5.06 37.29 2.24
564 565 7.116186 CGTGAGTACTAGTAGACGATGTTTAC 58.884 42.308 17.96 0.73 0.00 2.01
565 566 6.813649 ACGTGAGTACTAGTAGACGATGTTTA 59.186 38.462 24.94 0.00 46.88 2.01
566 567 5.641209 ACGTGAGTACTAGTAGACGATGTTT 59.359 40.000 24.94 8.63 46.88 2.83
567 568 5.174395 ACGTGAGTACTAGTAGACGATGTT 58.826 41.667 24.94 8.90 46.88 2.71
568 569 4.753233 ACGTGAGTACTAGTAGACGATGT 58.247 43.478 24.94 11.04 46.88 3.06
582 583 7.881643 TTAGCCGTTTTATTTTACGTGAGTA 57.118 32.000 0.00 0.00 46.88 2.59
584 585 6.685403 CCATTAGCCGTTTTATTTTACGTGAG 59.315 38.462 0.00 0.00 36.09 3.51
585 586 6.149142 ACCATTAGCCGTTTTATTTTACGTGA 59.851 34.615 0.00 0.00 36.09 4.35
586 587 6.249682 CACCATTAGCCGTTTTATTTTACGTG 59.750 38.462 0.00 0.00 36.09 4.49
587 588 6.149142 TCACCATTAGCCGTTTTATTTTACGT 59.851 34.615 0.00 0.00 36.09 3.57
588 589 6.544622 TCACCATTAGCCGTTTTATTTTACG 58.455 36.000 0.00 0.00 37.50 3.18
589 590 7.532571 ACTCACCATTAGCCGTTTTATTTTAC 58.467 34.615 0.00 0.00 0.00 2.01
590 591 7.690952 ACTCACCATTAGCCGTTTTATTTTA 57.309 32.000 0.00 0.00 0.00 1.52
591 592 6.584185 ACTCACCATTAGCCGTTTTATTTT 57.416 33.333 0.00 0.00 0.00 1.82
592 593 6.015772 ACAACTCACCATTAGCCGTTTTATTT 60.016 34.615 0.00 0.00 0.00 1.40
593 594 5.475564 ACAACTCACCATTAGCCGTTTTATT 59.524 36.000 0.00 0.00 0.00 1.40
594 595 5.007682 ACAACTCACCATTAGCCGTTTTAT 58.992 37.500 0.00 0.00 0.00 1.40
595 596 4.391155 ACAACTCACCATTAGCCGTTTTA 58.609 39.130 0.00 0.00 0.00 1.52
596 597 3.219281 ACAACTCACCATTAGCCGTTTT 58.781 40.909 0.00 0.00 0.00 2.43
597 598 2.858745 ACAACTCACCATTAGCCGTTT 58.141 42.857 0.00 0.00 0.00 3.60
598 599 2.561478 ACAACTCACCATTAGCCGTT 57.439 45.000 0.00 0.00 0.00 4.44
599 600 2.561478 AACAACTCACCATTAGCCGT 57.439 45.000 0.00 0.00 0.00 5.68
600 601 3.915437 AAAACAACTCACCATTAGCCG 57.085 42.857 0.00 0.00 0.00 5.52
601 602 6.327279 AGTTAAAACAACTCACCATTAGCC 57.673 37.500 0.00 0.00 0.00 3.93
602 603 8.642908 AAAAGTTAAAACAACTCACCATTAGC 57.357 30.769 0.00 0.00 0.00 3.09
629 630 5.247084 TGCGCAAAGGAGGTTAATAGTAAA 58.753 37.500 8.16 0.00 0.00 2.01
630 631 4.834534 TGCGCAAAGGAGGTTAATAGTAA 58.165 39.130 8.16 0.00 0.00 2.24
636 637 1.543802 CCATTGCGCAAAGGAGGTTAA 59.456 47.619 34.79 6.01 31.18 2.01
641 642 1.444895 GCACCATTGCGCAAAGGAG 60.445 57.895 41.64 35.46 39.50 3.69
642 643 2.650196 GCACCATTGCGCAAAGGA 59.350 55.556 41.64 16.86 39.50 3.36
650 651 5.651074 GCCCAAGCTTATAGCACCATTGC 62.651 52.174 0.00 0.00 45.56 3.56
654 655 0.623194 TGCCCAAGCTTATAGCACCA 59.377 50.000 11.88 0.00 45.56 4.17
658 659 0.183731 AGGGTGCCCAAGCTTATAGC 59.816 55.000 10.26 2.86 40.80 2.97
659 660 1.212935 ACAGGGTGCCCAAGCTTATAG 59.787 52.381 10.26 0.00 40.80 1.31
660 661 1.064758 CACAGGGTGCCCAAGCTTATA 60.065 52.381 10.26 0.00 40.80 0.98
662 663 1.074775 CACAGGGTGCCCAAGCTTA 59.925 57.895 10.26 0.00 40.80 3.09
663 664 2.203538 CACAGGGTGCCCAAGCTT 60.204 61.111 10.26 0.00 40.80 3.74
664 665 1.715019 TAACACAGGGTGCCCAAGCT 61.715 55.000 10.26 0.00 40.80 3.74
665 666 1.228429 TAACACAGGGTGCCCAAGC 60.228 57.895 10.26 0.00 36.98 4.01
669 670 3.053896 GCGTAACACAGGGTGCCC 61.054 66.667 0.00 0.00 36.98 5.36
769 770 1.137825 CTCAGAGGAGGACGAACGC 59.862 63.158 0.00 0.00 37.51 4.84
862 864 1.673920 CTAGAACTCTCGGCTGGACTC 59.326 57.143 0.00 0.00 0.00 3.36
885 887 4.506802 GGAGGGGAAGTGTTAATGTTGAGT 60.507 45.833 0.00 0.00 0.00 3.41
887 889 3.558321 CGGAGGGGAAGTGTTAATGTTGA 60.558 47.826 0.00 0.00 0.00 3.18
923 925 1.702957 CTTGTTGGGGAAGTGGAGGTA 59.297 52.381 0.00 0.00 0.00 3.08
925 927 0.895559 GCTTGTTGGGGAAGTGGAGG 60.896 60.000 0.00 0.00 0.00 4.30
926 928 1.237285 CGCTTGTTGGGGAAGTGGAG 61.237 60.000 0.00 0.00 0.00 3.86
927 929 1.228124 CGCTTGTTGGGGAAGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
928 930 2.919494 GCGCTTGTTGGGGAAGTGG 61.919 63.158 0.00 0.00 32.57 4.00
934 936 1.301677 GAGAAGAGCGCTTGTTGGGG 61.302 60.000 13.26 0.00 33.61 4.96
943 945 2.821810 GCCCAAGGAGAAGAGCGC 60.822 66.667 0.00 0.00 0.00 5.92
1094 1101 2.111999 CTGTTTCCTGGACTGCGGGA 62.112 60.000 0.00 0.00 0.00 5.14
1205 1218 2.436824 GAGGCTTCCCCTTCGTGC 60.437 66.667 0.00 0.00 46.60 5.34
1281 1294 1.154150 CGTCACGTCGTACCCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
1404 1417 3.083997 ATCACCTCCTCGGCCACC 61.084 66.667 2.24 0.00 35.61 4.61
1499 1512 0.438830 GCACGGTTGATTGACTCGAC 59.561 55.000 0.00 0.00 37.52 4.20
1504 1517 0.387239 GCAAGGCACGGTTGATTGAC 60.387 55.000 0.00 0.00 0.00 3.18
1512 1526 2.484287 ATAAGCAGGCAAGGCACGGT 62.484 55.000 0.00 0.00 0.00 4.83
1535 1549 1.302351 GAGCAGGTGAGCAGCAGTT 60.302 57.895 1.16 0.00 36.85 3.16
1536 1550 2.169937 GAGAGCAGGTGAGCAGCAGT 62.170 60.000 1.16 0.00 36.85 4.40
1564 1582 0.381801 CGAAGGCACAACAAGCAAGT 59.618 50.000 0.00 0.00 0.00 3.16
1582 1600 0.668096 TTACTAGTGCCACAACCGCG 60.668 55.000 5.39 0.00 0.00 6.46
1787 2226 0.329596 AAGGAGTCCAGGATTGGTGC 59.670 55.000 12.86 0.00 45.26 5.01
1793 2232 2.573915 GGTGAGAAAAGGAGTCCAGGAT 59.426 50.000 12.86 0.00 0.00 3.24
1794 2233 1.978580 GGTGAGAAAAGGAGTCCAGGA 59.021 52.381 12.86 0.00 0.00 3.86
1795 2234 1.699634 TGGTGAGAAAAGGAGTCCAGG 59.300 52.381 12.86 0.00 0.00 4.45
2054 2520 1.384502 ATGGGGCAGCTACTAGGCA 60.385 57.895 0.00 0.00 34.17 4.75
2080 2578 1.692411 GCTGGGTATTTTAGCCTGGG 58.308 55.000 10.40 0.00 46.32 4.45
2122 2662 1.625818 GGGCTTCACAGAAGGAGAAGA 59.374 52.381 8.66 0.00 40.85 2.87
2142 2682 0.321671 TCTGGAGGGAGCTTCAAACG 59.678 55.000 0.00 0.00 0.00 3.60
2233 2794 2.630158 AGCTAAGCTTGTGATGAGCAG 58.370 47.619 16.73 1.64 42.56 4.24
2234 2795 2.775911 AGCTAAGCTTGTGATGAGCA 57.224 45.000 16.73 0.00 42.56 4.26
2305 2879 2.202544 GAGAGACTCGCGTGCAGG 60.203 66.667 5.77 1.01 0.00 4.85
2421 3007 4.567318 GCACCTTATGGAGCCAGG 57.433 61.111 5.86 0.00 42.88 4.45
2430 3016 1.221840 CCTCCGCAGTGCACCTTAT 59.778 57.895 16.83 0.00 0.00 1.73
2582 3168 1.741770 GACGGCGCTCATGTCCTTT 60.742 57.895 6.90 0.00 0.00 3.11
2584 3170 4.148825 GGACGGCGCTCATGTCCT 62.149 66.667 24.29 0.00 46.86 3.85
2684 3270 1.227674 GGCGTCCATGATCTGGTCC 60.228 63.158 9.98 7.27 46.08 4.46
2848 3448 4.142293 GGCAGAGAGAAATCCCAACATTTC 60.142 45.833 0.00 0.00 41.37 2.17
2870 3470 3.996150 ACTTGCACAAGAACTTGATGG 57.004 42.857 19.35 10.20 42.93 3.51
2890 3490 5.335740 CGTGAACAGAGTCTTCTTAGGCTAA 60.336 44.000 6.80 6.80 36.18 3.09
2923 3523 0.179121 TACCAAGTGGCGATAGTGCG 60.179 55.000 0.00 0.00 39.32 5.34
3019 3619 5.993106 GTAGGTCTACTACGATTAACCGT 57.007 43.478 0.00 0.00 42.39 4.83
3262 3862 3.005539 GGGAGCCCTCTGTCAGCA 61.006 66.667 0.00 0.00 0.00 4.41
3817 4425 4.631813 GGAGGCGCATTAGTATTTCCTATG 59.368 45.833 10.83 0.00 0.00 2.23
3820 4428 2.706190 AGGAGGCGCATTAGTATTTCCT 59.294 45.455 10.83 0.00 0.00 3.36
4037 4645 5.937540 CCCCATTCGCATCATAAACTATACA 59.062 40.000 0.00 0.00 0.00 2.29
4749 5358 3.446799 CAAACAAATACCATGCCCATCG 58.553 45.455 0.00 0.00 0.00 3.84
4947 5556 2.102420 TCAGGCTGAGAGACAAAAACGA 59.898 45.455 14.43 0.00 0.00 3.85
4948 5557 2.483876 TCAGGCTGAGAGACAAAAACG 58.516 47.619 14.43 0.00 0.00 3.60
4962 5571 4.584325 TCAACAAGCAGTTTTAATCAGGCT 59.416 37.500 0.00 0.00 38.74 4.58
5149 5758 4.262549 CCAACCTTGATGAAAAATCTGCCA 60.263 41.667 0.00 0.00 0.00 4.92
5533 6145 5.008415 GTGGGATGCTAAATGTCAGAGATTG 59.992 44.000 0.00 0.00 0.00 2.67
5644 6256 3.640967 TGGTTCAAAATGAAACCAGAGGG 59.359 43.478 5.74 0.00 43.19 4.30
5806 6431 4.002982 TGACTTTGCTATTTGCTGACGAT 58.997 39.130 0.00 0.00 43.37 3.73
5807 6432 3.398406 TGACTTTGCTATTTGCTGACGA 58.602 40.909 0.00 0.00 43.37 4.20
5863 6488 0.755686 AGATCTGCTCGCTTTAGGGG 59.244 55.000 0.00 0.00 0.00 4.79
5903 6533 1.414919 GGTTGGTGCGGATATGGTCTA 59.585 52.381 0.00 0.00 0.00 2.59
5996 6626 1.134098 GTTGGATCCGGTGATGGTGAT 60.134 52.381 7.39 0.00 0.00 3.06
6083 6713 2.514803 ACCTGGCAATGTACCTTGTTC 58.485 47.619 11.79 6.21 0.00 3.18
6184 6834 3.108292 TGGTGGTCACAACACATGG 57.892 52.632 0.00 0.00 39.97 3.66
6248 6899 1.611419 CAGAGGGATGGTGGTGCAT 59.389 57.895 0.00 0.00 0.00 3.96
6417 7077 2.571212 TGGTGATCTGCTTTTCACGTT 58.429 42.857 0.00 0.00 42.51 3.99
6540 7275 1.613925 GGATCTTGGGATCGATCGTGA 59.386 52.381 18.81 13.43 46.77 4.35
6796 7533 9.764363 AAGAAAAGGAGACATTTGTTTTATTCC 57.236 29.630 0.00 0.00 31.48 3.01
6815 7552 3.126073 GGTTTGCTTCTGCCAAGAAAAG 58.874 45.455 0.00 0.00 41.89 2.27
6934 7671 3.857052 CAGCCATGAGTGCAATTTTGAT 58.143 40.909 0.00 0.00 0.00 2.57
6947 7684 2.633967 ACAAAGGAAAATGCAGCCATGA 59.366 40.909 0.00 0.00 0.00 3.07
7225 7963 2.289820 GTGGAAACGAACTGGGAAGTTC 59.710 50.000 8.27 8.27 43.30 3.01
7261 7999 6.187727 ACCTTCTTATCTGAACCAAACTCA 57.812 37.500 0.00 0.00 0.00 3.41
7264 8002 5.354513 GGCTACCTTCTTATCTGAACCAAAC 59.645 44.000 0.00 0.00 0.00 2.93
7276 8014 6.143915 AGAACAGGATATGGCTACCTTCTTA 58.856 40.000 0.00 0.00 31.06 2.10
7303 8041 5.293560 CAGATAGGAAGCAAGGTAAGCTAC 58.706 45.833 0.00 0.00 42.53 3.58
7306 8044 2.875317 GCAGATAGGAAGCAAGGTAAGC 59.125 50.000 0.00 0.00 0.00 3.09
7310 8048 1.211457 CAGGCAGATAGGAAGCAAGGT 59.789 52.381 0.00 0.00 0.00 3.50
7312 8050 2.996249 TCAGGCAGATAGGAAGCAAG 57.004 50.000 0.00 0.00 0.00 4.01
7329 8072 4.783560 ATCATGATTGACTGGACCATCA 57.216 40.909 1.18 0.00 33.85 3.07
7334 8077 3.243877 CGACGAATCATGATTGACTGGAC 59.756 47.826 25.37 8.17 33.85 4.02
7419 8176 0.458543 AGTCGTATGGAAGCGTGCTG 60.459 55.000 0.00 0.00 0.00 4.41
7491 8251 1.149174 CAGTGGCTGGTGACAAGGT 59.851 57.895 0.00 0.00 42.06 3.50
7547 8307 5.049828 ACAATTCTTTTTCTTTCCTTGGCG 58.950 37.500 0.00 0.00 0.00 5.69
7548 8308 8.607441 ATTACAATTCTTTTTCTTTCCTTGGC 57.393 30.769 0.00 0.00 0.00 4.52
7596 8356 7.120285 TCAGAAGCTATTCAAAATCCTGTTCTG 59.880 37.037 0.00 0.00 38.89 3.02
7598 8358 7.094634 TGTCAGAAGCTATTCAAAATCCTGTTC 60.095 37.037 0.00 0.00 37.94 3.18
7599 8359 6.716628 TGTCAGAAGCTATTCAAAATCCTGTT 59.283 34.615 0.00 0.00 37.94 3.16
7600 8360 6.240894 TGTCAGAAGCTATTCAAAATCCTGT 58.759 36.000 0.00 0.00 37.94 4.00
7714 8474 4.065088 AGGCACAACAATGTACTGTACTG 58.935 43.478 17.98 11.60 37.82 2.74
7768 8528 9.480053 GGCTTGATTATGCAATATTAACATGTT 57.520 29.630 16.68 16.68 0.00 2.71
7769 8529 7.809331 CGGCTTGATTATGCAATATTAACATGT 59.191 33.333 11.56 0.00 0.00 3.21
7770 8530 8.022550 TCGGCTTGATTATGCAATATTAACATG 58.977 33.333 11.56 0.00 0.00 3.21
7771 8531 8.109705 TCGGCTTGATTATGCAATATTAACAT 57.890 30.769 0.00 7.93 0.00 2.71
7772 8532 7.503521 TCGGCTTGATTATGCAATATTAACA 57.496 32.000 0.00 0.00 0.00 2.41
7773 8533 7.538678 CCTTCGGCTTGATTATGCAATATTAAC 59.461 37.037 0.00 0.00 0.00 2.01
7774 8534 7.592938 CCTTCGGCTTGATTATGCAATATTAA 58.407 34.615 0.00 0.00 0.00 1.40
7775 8535 6.349280 GCCTTCGGCTTGATTATGCAATATTA 60.349 38.462 0.00 0.00 46.69 0.98
7836 8596 1.203052 CATGGTGTTCATGCTGGTTCC 59.797 52.381 0.00 0.00 45.58 3.62
7845 8605 3.684908 TGGAACGAATCATGGTGTTCAT 58.315 40.909 10.40 0.00 41.84 2.57
7846 8606 3.133141 TGGAACGAATCATGGTGTTCA 57.867 42.857 10.40 0.00 41.84 3.18
7847 8607 3.119849 CCTTGGAACGAATCATGGTGTTC 60.120 47.826 1.43 1.43 39.89 3.18
7949 8717 9.379791 CTTATATTTTGGAACGGAGAAAGTACT 57.620 33.333 0.00 0.00 0.00 2.73
7950 8718 9.159364 ACTTATATTTTGGAACGGAGAAAGTAC 57.841 33.333 0.00 0.00 0.00 2.73
7952 8720 8.101419 AGACTTATATTTTGGAACGGAGAAAGT 58.899 33.333 0.00 0.00 0.00 2.66
7953 8721 8.494016 AGACTTATATTTTGGAACGGAGAAAG 57.506 34.615 0.00 0.00 0.00 2.62
7954 8722 8.857694 AAGACTTATATTTTGGAACGGAGAAA 57.142 30.769 0.00 0.00 0.00 2.52
7973 8741 9.905713 TCCATAGCACAATCTTTATAAAGACTT 57.094 29.630 26.30 18.59 46.80 3.01
7974 8742 9.331282 GTCCATAGCACAATCTTTATAAAGACT 57.669 33.333 26.30 20.24 46.80 3.24
7975 8743 9.331282 AGTCCATAGCACAATCTTTATAAAGAC 57.669 33.333 26.30 15.11 46.80 3.01
7981 8749 9.712305 GTATGTAGTCCATAGCACAATCTTTAT 57.288 33.333 0.00 0.00 36.71 1.40
7982 8750 8.700973 TGTATGTAGTCCATAGCACAATCTTTA 58.299 33.333 0.00 0.00 36.71 1.85
7983 8751 7.564793 TGTATGTAGTCCATAGCACAATCTTT 58.435 34.615 0.00 0.00 36.71 2.52
7984 8752 7.124573 TGTATGTAGTCCATAGCACAATCTT 57.875 36.000 0.00 0.00 36.71 2.40
7985 8753 6.731292 TGTATGTAGTCCATAGCACAATCT 57.269 37.500 0.00 0.00 36.71 2.40
7986 8754 7.519008 GCTTTGTATGTAGTCCATAGCACAATC 60.519 40.741 0.00 0.00 36.71 2.67
7991 8759 4.098807 TCGCTTTGTATGTAGTCCATAGCA 59.901 41.667 0.00 0.00 36.71 3.49
7995 8763 6.112734 TCATTTCGCTTTGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
7997 8765 5.581085 ACTCATTTCGCTTTGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
7998 8766 6.090898 ACACTCATTTCGCTTTGTATGTAGTC 59.909 38.462 0.00 0.00 0.00 2.59
7999 8767 5.932303 ACACTCATTTCGCTTTGTATGTAGT 59.068 36.000 0.00 0.00 0.00 2.73
8000 8768 6.408858 ACACTCATTTCGCTTTGTATGTAG 57.591 37.500 0.00 0.00 0.00 2.74
8001 8769 7.979537 AGATACACTCATTTCGCTTTGTATGTA 59.020 33.333 0.00 0.00 31.80 2.29
8002 8770 6.818644 AGATACACTCATTTCGCTTTGTATGT 59.181 34.615 0.00 0.00 31.80 2.29
8003 8771 7.239166 AGATACACTCATTTCGCTTTGTATG 57.761 36.000 0.00 0.00 31.80 2.39
8005 8773 9.459640 GTATAGATACACTCATTTCGCTTTGTA 57.540 33.333 0.00 0.00 33.52 2.41
8006 8774 8.198109 AGTATAGATACACTCATTTCGCTTTGT 58.802 33.333 2.66 0.00 35.74 2.83
8007 8775 8.581057 AGTATAGATACACTCATTTCGCTTTG 57.419 34.615 2.66 0.00 35.74 2.77
8008 8776 8.634444 AGAGTATAGATACACTCATTTCGCTTT 58.366 33.333 1.45 0.00 42.99 3.51
8009 8777 8.172352 AGAGTATAGATACACTCATTTCGCTT 57.828 34.615 1.45 0.00 42.99 4.68
8010 8778 7.753309 AGAGTATAGATACACTCATTTCGCT 57.247 36.000 1.45 0.00 42.99 4.93
8011 8779 9.894783 TTTAGAGTATAGATACACTCATTTCGC 57.105 33.333 3.30 0.00 42.99 4.70
8040 8808 9.431887 GAACCACATACGGATGTATATAAATGT 57.568 33.333 14.23 0.00 44.82 2.71
8041 8809 9.430623 TGAACCACATACGGATGTATATAAATG 57.569 33.333 14.23 0.00 44.82 2.32
8045 8813 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
8047 8815 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
8048 8816 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
8050 8818 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
8051 8819 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
8052 8820 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
8054 8822 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
8055 8823 7.539712 AAGATTTCACTATGAACCACATACG 57.460 36.000 0.00 0.00 35.89 3.06
8081 8849 9.379791 CCTCCGTTTCTAAATACAAGTCTTTAT 57.620 33.333 0.00 0.00 0.00 1.40
8082 8850 7.820872 CCCTCCGTTTCTAAATACAAGTCTTTA 59.179 37.037 0.00 0.00 0.00 1.85
8087 8855 5.247792 ACTCCCTCCGTTTCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
8089 8857 5.750352 ACTCCCTCCGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
8092 8860 7.722949 TTTCTACTCCCTCCGTTTCTAAATA 57.277 36.000 0.00 0.00 0.00 1.40
8094 8862 6.616237 ATTTCTACTCCCTCCGTTTCTAAA 57.384 37.500 0.00 0.00 0.00 1.85
8095 8863 7.398332 ACTTATTTCTACTCCCTCCGTTTCTAA 59.602 37.037 0.00 0.00 0.00 2.10
8097 8865 5.720520 ACTTATTTCTACTCCCTCCGTTTCT 59.279 40.000 0.00 0.00 0.00 2.52
8098 8866 5.975282 ACTTATTTCTACTCCCTCCGTTTC 58.025 41.667 0.00 0.00 0.00 2.78
8099 8867 7.486407 TTACTTATTTCTACTCCCTCCGTTT 57.514 36.000 0.00 0.00 0.00 3.60
8100 8868 7.343833 TGATTACTTATTTCTACTCCCTCCGTT 59.656 37.037 0.00 0.00 0.00 4.44
8101 8869 6.837568 TGATTACTTATTTCTACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
8102 8870 7.286215 TGATTACTTATTTCTACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
8103 8871 8.871125 TGATGATTACTTATTTCTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
8104 8872 9.921637 CTGATGATTACTTATTTCTACTCCCTC 57.078 37.037 0.00 0.00 0.00 4.30
8107 8875 9.202273 CTGCTGATGATTACTTATTTCTACTCC 57.798 37.037 0.00 0.00 0.00 3.85
8108 8876 8.707839 GCTGCTGATGATTACTTATTTCTACTC 58.292 37.037 0.00 0.00 0.00 2.59
8109 8877 8.428063 AGCTGCTGATGATTACTTATTTCTACT 58.572 33.333 0.00 0.00 0.00 2.57
8111 8879 8.424133 TCAGCTGCTGATGATTACTTATTTCTA 58.576 33.333 27.35 0.00 35.39 2.10
8117 8885 5.104776 AGGTTCAGCTGCTGATGATTACTTA 60.105 40.000 30.80 11.63 40.39 2.24
8126 9290 2.191400 TCCTAAGGTTCAGCTGCTGAT 58.809 47.619 30.80 19.15 40.39 2.90
8156 9320 1.952102 TACCGCGTGTCTTGGATCCC 61.952 60.000 9.90 0.00 0.00 3.85
8175 9339 2.113986 GGCAGCCAAGACCACACT 59.886 61.111 6.55 0.00 0.00 3.55
8223 9387 4.410400 GAGTGGTTCCGCCCCAGG 62.410 72.222 0.00 0.00 36.04 4.45
8347 9511 0.392461 GACATGGCTTACGAGGGCAA 60.392 55.000 0.00 0.00 42.27 4.52
8454 9620 3.703127 GCGTCGAGGGGGAAGGTT 61.703 66.667 7.31 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.