Multiple sequence alignment - TraesCS2D01G314800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G314800 chr2D 100.000 6248 0 0 1 6248 404378814 404385061 0.000000e+00 11538
1 TraesCS2D01G314800 chr2D 85.943 811 90 15 3132 3925 404381717 404382520 0.000000e+00 845
2 TraesCS2D01G314800 chr2D 85.943 811 90 15 2904 3707 404381945 404382738 0.000000e+00 845
3 TraesCS2D01G314800 chr2D 88.293 615 61 7 1 608 257395496 257394886 0.000000e+00 726
4 TraesCS2D01G314800 chr2D 83.278 604 78 15 2904 3500 404382160 404382747 9.220000e-148 534
5 TraesCS2D01G314800 chr2A 89.196 2425 186 40 1568 3933 542643067 542645474 0.000000e+00 2957
6 TraesCS2D01G314800 chr2A 85.197 1601 154 55 4133 5665 542645852 542647437 0.000000e+00 1567
7 TraesCS2D01G314800 chr2A 90.648 941 49 21 660 1575 542642104 542643030 0.000000e+00 1214
8 TraesCS2D01G314800 chr2A 85.497 1186 133 27 2906 4082 542644678 542645833 0.000000e+00 1201
9 TraesCS2D01G314800 chr2A 84.941 850 93 26 2877 3713 542644858 542645685 0.000000e+00 828
10 TraesCS2D01G314800 chr2A 87.714 643 65 10 3290 3927 542644620 542645253 0.000000e+00 737
11 TraesCS2D01G314800 chr2A 83.500 600 77 14 2904 3500 542645108 542645688 1.980000e-149 540
12 TraesCS2D01G314800 chr2A 85.479 303 34 4 1966 2259 133695036 133695337 2.190000e-79 307
13 TraesCS2D01G314800 chr2A 91.837 196 12 3 5727 5922 542647456 542647647 2.870000e-68 270
14 TraesCS2D01G314800 chr2A 93.023 172 8 3 5905 6072 542647712 542647883 1.340000e-61 248
15 TraesCS2D01G314800 chr2B 93.217 1489 75 10 1568 3037 478912758 478911277 0.000000e+00 2167
16 TraesCS2D01G314800 chr2B 92.023 865 29 14 729 1575 478913637 478912795 0.000000e+00 1179
17 TraesCS2D01G314800 chr2B 94.437 737 30 6 4451 5186 478910000 478909274 0.000000e+00 1123
18 TraesCS2D01G314800 chr2B 88.584 911 84 14 3036 3937 478911195 478910296 0.000000e+00 1088
19 TraesCS2D01G314800 chr2B 85.465 1032 112 24 2904 3925 478911097 478910094 0.000000e+00 1040
20 TraesCS2D01G314800 chr2B 84.466 824 101 22 2907 3725 478910879 478910078 0.000000e+00 787
21 TraesCS2D01G314800 chr2B 88.162 642 64 9 3290 3927 478911155 478910522 0.000000e+00 754
22 TraesCS2D01G314800 chr2B 86.146 563 54 19 5152 5699 478909248 478908695 2.510000e-163 586
23 TraesCS2D01G314800 chr2B 93.231 325 11 6 5751 6065 478908680 478908357 9.480000e-128 468
24 TraesCS2D01G314800 chr2B 84.333 300 35 5 1971 2259 180610536 180610834 3.690000e-72 283
25 TraesCS2D01G314800 chr5B 91.163 645 49 8 1 641 134047140 134047780 0.000000e+00 869
26 TraesCS2D01G314800 chr5B 87.705 610 63 7 1 602 241245183 241245788 0.000000e+00 701
27 TraesCS2D01G314800 chr4D 91.026 624 49 3 1 617 481345655 481346278 0.000000e+00 835
28 TraesCS2D01G314800 chr4D 89.013 628 62 3 1 621 431736246 431735619 0.000000e+00 771
29 TraesCS2D01G314800 chr4D 88.836 627 64 4 1 621 431623344 431622718 0.000000e+00 765
30 TraesCS2D01G314800 chr4D 86.391 169 19 4 6077 6243 252662337 252662503 1.380000e-41 182
31 TraesCS2D01G314800 chr4D 85.976 164 20 3 6081 6243 252346804 252346965 8.330000e-39 172
32 TraesCS2D01G314800 chr4D 86.335 161 18 4 6081 6240 252612109 252612266 8.330000e-39 172
33 TraesCS2D01G314800 chr6D 90.064 624 54 8 1 620 445456985 445457604 0.000000e+00 802
34 TraesCS2D01G314800 chr6D 86.364 220 25 4 4409 4628 468904654 468904440 1.050000e-57 235
35 TraesCS2D01G314800 chr6D 86.164 159 19 3 6081 6238 285054756 285054912 1.080000e-37 169
36 TraesCS2D01G314800 chr6D 86.164 159 19 3 6081 6238 363669175 363669331 1.080000e-37 169
37 TraesCS2D01G314800 chr6D 90.244 123 12 0 1189 1311 420391265 420391387 1.800000e-35 161
38 TraesCS2D01G314800 chr4B 80.792 1010 107 34 2721 3705 397036141 397037088 0.000000e+00 710
39 TraesCS2D01G314800 chr4B 80.092 869 144 24 1705 2565 614221863 614222710 2.470000e-173 619
40 TraesCS2D01G314800 chr4B 83.234 668 78 23 3607 4259 397036781 397037429 3.250000e-162 582
41 TraesCS2D01G314800 chr4B 86.420 162 19 3 6081 6241 201851871 201851712 2.320000e-39 174
42 TraesCS2D01G314800 chr4B 86.420 162 19 3 6081 6241 201908032 201907873 2.320000e-39 174
43 TraesCS2D01G314800 chr7B 87.356 609 73 4 1 608 682845186 682844581 0.000000e+00 695
44 TraesCS2D01G314800 chr7B 83.673 392 57 5 4262 4653 99736206 99736590 4.600000e-96 363
45 TraesCS2D01G314800 chr7B 85.535 159 19 4 6090 6246 584886015 584885859 5.010000e-36 163
46 TraesCS2D01G314800 chr5A 86.460 613 75 5 1 605 125993375 125992763 0.000000e+00 665
47 TraesCS2D01G314800 chr3A 83.206 393 57 6 4262 4653 107651347 107651731 9.970000e-93 351
48 TraesCS2D01G314800 chr6A 81.679 393 49 8 4262 4653 27559787 27559417 7.870000e-79 305
49 TraesCS2D01G314800 chr6A 90.244 123 12 0 1189 1311 563374928 563375050 1.800000e-35 161
50 TraesCS2D01G314800 chr3D 85.909 220 26 4 4409 4628 573599090 573598876 4.870000e-56 230
51 TraesCS2D01G314800 chr4A 86.164 159 19 3 6081 6238 418898356 418898200 1.080000e-37 169
52 TraesCS2D01G314800 chr6B 88.618 123 14 0 1189 1311 633533357 633533479 3.900000e-32 150
53 TraesCS2D01G314800 chr1B 88.696 115 11 2 2070 2183 272048997 272049110 8.450000e-29 139
54 TraesCS2D01G314800 chr1B 87.719 114 14 0 2070 2183 502360511 502360624 3.930000e-27 134
55 TraesCS2D01G314800 chr7A 84.553 123 19 0 1189 1311 528227097 528226975 8.510000e-24 122
56 TraesCS2D01G314800 chr3B 82.114 123 22 0 1189 1311 712415376 712415254 8.570000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G314800 chr2D 404378814 404385061 6247 False 3440.500000 11538 88.791000 1 6248 4 chr2D.!!$F1 6247
1 TraesCS2D01G314800 chr2D 257394886 257395496 610 True 726.000000 726 88.293000 1 608 1 chr2D.!!$R1 607
2 TraesCS2D01G314800 chr2A 542642104 542647883 5779 False 1062.444444 2957 87.950333 660 6072 9 chr2A.!!$F2 5412
3 TraesCS2D01G314800 chr2B 478908357 478913637 5280 True 1021.333333 2167 89.525667 729 6065 9 chr2B.!!$R1 5336
4 TraesCS2D01G314800 chr5B 134047140 134047780 640 False 869.000000 869 91.163000 1 641 1 chr5B.!!$F1 640
5 TraesCS2D01G314800 chr5B 241245183 241245788 605 False 701.000000 701 87.705000 1 602 1 chr5B.!!$F2 601
6 TraesCS2D01G314800 chr4D 481345655 481346278 623 False 835.000000 835 91.026000 1 617 1 chr4D.!!$F4 616
7 TraesCS2D01G314800 chr4D 431735619 431736246 627 True 771.000000 771 89.013000 1 621 1 chr4D.!!$R2 620
8 TraesCS2D01G314800 chr4D 431622718 431623344 626 True 765.000000 765 88.836000 1 621 1 chr4D.!!$R1 620
9 TraesCS2D01G314800 chr6D 445456985 445457604 619 False 802.000000 802 90.064000 1 620 1 chr6D.!!$F4 619
10 TraesCS2D01G314800 chr4B 397036141 397037429 1288 False 646.000000 710 82.013000 2721 4259 2 chr4B.!!$F2 1538
11 TraesCS2D01G314800 chr4B 614221863 614222710 847 False 619.000000 619 80.092000 1705 2565 1 chr4B.!!$F1 860
12 TraesCS2D01G314800 chr7B 682844581 682845186 605 True 695.000000 695 87.356000 1 608 1 chr7B.!!$R2 607
13 TraesCS2D01G314800 chr5A 125992763 125993375 612 True 665.000000 665 86.460000 1 605 1 chr5A.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 989 0.386838 AAGAAGCAAAGCACCTGCAC 59.613 50.000 7.34 1.96 45.16 4.57 F
1445 1471 0.463654 TGCGTCTGGAATATGCCACC 60.464 55.000 0.00 0.00 33.52 4.61 F
2608 2738 0.101759 ATTTGCATGGACATCGCAGC 59.898 50.000 0.00 0.00 36.91 5.25 F
4185 4662 1.132834 TGCCTGCACAAATATTGCTCG 59.867 47.619 0.00 0.00 40.86 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 1962 1.741770 GGCGCCTTGACCACTGTAG 60.742 63.158 22.15 0.0 0.00 2.74 R
3241 3487 2.223745 ACGCCACGTAATTGGAGTTTT 58.776 42.857 0.00 0.0 46.49 2.43 R
4264 4745 0.390124 ATTGTGTGTGCCTGCTTTGG 59.610 50.000 0.00 0.0 0.00 3.28 R
5775 6373 0.032540 ACTTGGTCGACGGTACAACC 59.967 55.000 9.92 0.0 34.05 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.758685 CTCGGGCCCTCTCTGATCTT 60.759 60.000 22.43 0.00 0.00 2.40
83 85 1.296056 CCCACGGTTCCACGATCAAC 61.296 60.000 0.00 0.00 37.61 3.18
130 133 0.666274 CAACGCCGTTGAGAGTGCTA 60.666 55.000 24.84 0.00 45.28 3.49
224 228 2.407428 CGCGGTCTACCTCTCTGCA 61.407 63.158 0.00 0.00 33.64 4.41
264 268 1.432514 GACGAAGCACATTGAGCTCA 58.567 50.000 13.74 13.74 42.53 4.26
280 284 1.608025 GCTCAACATCCACTTCGTCCA 60.608 52.381 0.00 0.00 0.00 4.02
282 286 1.967779 TCAACATCCACTTCGTCCAGA 59.032 47.619 0.00 0.00 0.00 3.86
359 363 1.154205 CCGATGTCATGACGAAGGGC 61.154 60.000 20.54 5.54 0.00 5.19
460 471 9.581099 TTGAACATGCATATACGTATATAGGTG 57.419 33.333 24.07 21.88 29.48 4.00
491 502 2.108157 TTGCACCTGTCGCGTCTT 59.892 55.556 5.77 0.00 0.00 3.01
557 571 4.220821 AGACGCACCCCTTGTATCTATATG 59.779 45.833 0.00 0.00 0.00 1.78
584 598 4.615949 CCTAGTGGACGATCAATGAGAAG 58.384 47.826 0.00 0.00 34.57 2.85
622 637 6.954352 ATCCTTTCTCCCTAACTTACACTT 57.046 37.500 0.00 0.00 0.00 3.16
624 639 7.145474 TCCTTTCTCCCTAACTTACACTTTT 57.855 36.000 0.00 0.00 0.00 2.27
625 640 7.580007 TCCTTTCTCCCTAACTTACACTTTTT 58.420 34.615 0.00 0.00 0.00 1.94
626 641 8.716779 TCCTTTCTCCCTAACTTACACTTTTTA 58.283 33.333 0.00 0.00 0.00 1.52
627 642 9.516546 CCTTTCTCCCTAACTTACACTTTTTAT 57.483 33.333 0.00 0.00 0.00 1.40
631 646 9.720769 TCTCCCTAACTTACACTTTTTATCAAG 57.279 33.333 0.00 0.00 0.00 3.02
632 647 8.331730 TCCCTAACTTACACTTTTTATCAAGC 57.668 34.615 0.00 0.00 0.00 4.01
633 648 7.392393 TCCCTAACTTACACTTTTTATCAAGCC 59.608 37.037 0.00 0.00 0.00 4.35
634 649 7.393515 CCCTAACTTACACTTTTTATCAAGCCT 59.606 37.037 0.00 0.00 0.00 4.58
635 650 9.444600 CCTAACTTACACTTTTTATCAAGCCTA 57.555 33.333 0.00 0.00 0.00 3.93
637 652 7.379098 ACTTACACTTTTTATCAAGCCTAGC 57.621 36.000 0.00 0.00 0.00 3.42
638 653 7.168905 ACTTACACTTTTTATCAAGCCTAGCT 58.831 34.615 0.00 0.00 42.56 3.32
651 666 4.264460 AGCCTAGCTTTGGAATATCTCG 57.736 45.455 9.33 0.00 33.89 4.04
652 667 3.898123 AGCCTAGCTTTGGAATATCTCGA 59.102 43.478 9.33 0.00 33.89 4.04
653 668 4.345257 AGCCTAGCTTTGGAATATCTCGAA 59.655 41.667 9.33 0.00 33.89 3.71
654 669 5.012561 AGCCTAGCTTTGGAATATCTCGAAT 59.987 40.000 9.33 0.00 33.89 3.34
655 670 5.121454 GCCTAGCTTTGGAATATCTCGAATG 59.879 44.000 9.33 0.00 0.00 2.67
656 671 5.121454 CCTAGCTTTGGAATATCTCGAATGC 59.879 44.000 0.00 9.88 40.83 3.56
657 672 3.817647 AGCTTTGGAATATCTCGAATGCC 59.182 43.478 12.22 0.00 41.19 4.40
658 673 3.565482 GCTTTGGAATATCTCGAATGCCA 59.435 43.478 0.00 0.00 37.11 4.92
712 731 1.132500 GATAGCTTACTGGGTGGGCT 58.868 55.000 0.00 0.00 37.08 5.19
737 756 2.417586 TCAGCAGAAAATCACGCTCATG 59.582 45.455 0.00 0.00 30.72 3.07
813 835 7.603784 GTCCTTCGTTATAAAAACCACTTCCTA 59.396 37.037 0.00 0.00 0.00 2.94
962 985 0.540597 GGGGAAGAAGCAAAGCACCT 60.541 55.000 0.00 0.00 0.00 4.00
965 988 0.670162 GAAGAAGCAAAGCACCTGCA 59.330 50.000 7.34 0.00 45.16 4.41
966 989 0.386838 AAGAAGCAAAGCACCTGCAC 59.613 50.000 7.34 1.96 45.16 4.57
968 991 2.426122 GAAGCAAAGCACCTGCACCC 62.426 60.000 7.34 0.00 45.16 4.61
969 992 4.347453 GCAAAGCACCTGCACCCG 62.347 66.667 0.00 0.00 45.16 5.28
970 993 4.347453 CAAAGCACCTGCACCCGC 62.347 66.667 0.00 0.00 45.16 6.13
1340 1363 3.028366 GCTTTCTTGTCTCCGCGGC 62.028 63.158 23.51 7.40 0.00 6.53
1342 1365 3.509137 TTTCTTGTCTCCGCGGCGT 62.509 57.895 23.51 0.00 0.00 5.68
1397 1420 1.630878 CTGGAGGCTGGTTAGGTTCTT 59.369 52.381 0.00 0.00 0.00 2.52
1401 1424 4.291249 TGGAGGCTGGTTAGGTTCTTATTT 59.709 41.667 0.00 0.00 0.00 1.40
1403 1426 5.497474 GAGGCTGGTTAGGTTCTTATTTCA 58.503 41.667 0.00 0.00 0.00 2.69
1406 1429 5.885912 GGCTGGTTAGGTTCTTATTTCATGA 59.114 40.000 0.00 0.00 0.00 3.07
1442 1468 3.426695 GCATAATGCGTCTGGAATATGCC 60.427 47.826 6.73 0.00 39.60 4.40
1445 1471 0.463654 TGCGTCTGGAATATGCCACC 60.464 55.000 0.00 0.00 33.52 4.61
1485 1520 5.487433 TCTGTTGTCAATGGATTCGTACAT 58.513 37.500 0.00 0.00 0.00 2.29
1498 1533 8.574196 TGGATTCGTACATATCGCATATTATG 57.426 34.615 0.00 0.00 33.08 1.90
1570 1610 2.488545 TGCCAACGTGTTTGTTAACTGT 59.511 40.909 7.22 0.00 35.24 3.55
1575 1659 5.402867 CCAACGTGTTTGTTAACTGTTTGTT 59.597 36.000 7.22 2.56 36.77 2.83
1649 1733 4.201970 ACAATTAACTGTTGTTGTGGACCG 60.202 41.667 18.83 0.49 36.44 4.79
1655 1739 0.935196 GTTGTTGTGGACCGACTGTC 59.065 55.000 0.00 0.00 43.67 3.51
1675 1759 2.357323 TCAATGATTTGTGTGTGCGTGT 59.643 40.909 0.00 0.00 34.32 4.49
1722 1810 4.887071 TCGCCCTGCTATGTTTTATCATTT 59.113 37.500 0.00 0.00 0.00 2.32
1723 1811 5.008613 TCGCCCTGCTATGTTTTATCATTTC 59.991 40.000 0.00 0.00 0.00 2.17
1873 1962 0.817654 GGGTGCCTACTTTGATTGGC 59.182 55.000 0.00 0.00 45.10 4.52
2291 2389 2.175202 CTACTCCCTGCTCTGTTGTCT 58.825 52.381 0.00 0.00 0.00 3.41
2292 2390 1.428869 ACTCCCTGCTCTGTTGTCTT 58.571 50.000 0.00 0.00 0.00 3.01
2293 2391 1.771255 ACTCCCTGCTCTGTTGTCTTT 59.229 47.619 0.00 0.00 0.00 2.52
2294 2392 2.173569 ACTCCCTGCTCTGTTGTCTTTT 59.826 45.455 0.00 0.00 0.00 2.27
2295 2393 2.810852 CTCCCTGCTCTGTTGTCTTTTC 59.189 50.000 0.00 0.00 0.00 2.29
2296 2394 2.172505 TCCCTGCTCTGTTGTCTTTTCA 59.827 45.455 0.00 0.00 0.00 2.69
2297 2395 3.152341 CCCTGCTCTGTTGTCTTTTCAT 58.848 45.455 0.00 0.00 0.00 2.57
2308 2406 7.231115 TCTGTTGTCTTTTCATCATGAATCCAA 59.769 33.333 0.00 0.00 36.11 3.53
2366 2471 2.621556 ATAATGTTTGGGCAGTGGGT 57.378 45.000 0.00 0.00 0.00 4.51
2520 2629 3.263261 GAACCTTACTTCTGCTACCAGC 58.737 50.000 0.00 0.00 42.82 4.85
2579 2709 7.786030 TGTTCTTAATTTTTGAACATGGGACA 58.214 30.769 13.10 0.00 43.15 4.02
2604 2734 4.353737 CCAAACTATTTGCATGGACATCG 58.646 43.478 0.00 0.00 39.31 3.84
2608 2738 0.101759 ATTTGCATGGACATCGCAGC 59.898 50.000 0.00 0.00 36.91 5.25
2706 2836 2.680312 TCCACACTGCTTGAGCTATC 57.320 50.000 4.44 0.00 42.66 2.08
2787 2926 4.439305 TGCTGGTGACAAATCTTATTGC 57.561 40.909 0.00 0.00 42.06 3.56
2869 3011 8.721478 CACTACAATTTACTAATGTCTTGTGCT 58.279 33.333 0.00 0.00 31.01 4.40
2872 3020 6.863126 ACAATTTACTAATGTCTTGTGCTTGC 59.137 34.615 0.00 0.00 0.00 4.01
2895 3043 5.904080 GCGCAACTCTAGTATAATTTTGCTG 59.096 40.000 0.30 0.00 36.55 4.41
3229 3475 3.370366 CACACTGCTTGAGTTATCTCTGC 59.630 47.826 2.61 7.21 40.98 4.26
3241 3487 7.454225 TGAGTTATCTCTGCTATACTAGAGCA 58.546 38.462 5.30 5.30 46.78 4.26
3278 3524 5.062433 CGTGGCGTACATGTTTGTTAAGATA 59.938 40.000 2.30 0.00 37.28 1.98
3279 3525 6.475207 GTGGCGTACATGTTTGTTAAGATAG 58.525 40.000 2.30 0.00 37.28 2.08
3280 3526 6.311935 GTGGCGTACATGTTTGTTAAGATAGA 59.688 38.462 2.30 0.00 37.28 1.98
3281 3527 7.011109 GTGGCGTACATGTTTGTTAAGATAGAT 59.989 37.037 2.30 0.00 37.28 1.98
3282 3528 7.551262 TGGCGTACATGTTTGTTAAGATAGATT 59.449 33.333 2.30 0.00 37.28 2.40
3283 3529 9.037737 GGCGTACATGTTTGTTAAGATAGATTA 57.962 33.333 2.30 0.00 37.28 1.75
3284 3530 9.845305 GCGTACATGTTTGTTAAGATAGATTAC 57.155 33.333 2.30 0.00 37.28 1.89
3323 3569 8.517878 CACATCTTTCATTGAAACTCCAGTATT 58.482 33.333 7.74 0.00 0.00 1.89
3357 3603 8.289618 TGAGAATATTAACTCTTTGTTGCACAC 58.710 33.333 5.92 0.00 39.55 3.82
3361 3607 3.764885 AACTCTTTGTTGCACACAGTC 57.235 42.857 0.00 0.00 37.52 3.51
3373 3619 3.623060 TGCACACAGTCTTGTTCTTCTTC 59.377 43.478 0.00 0.00 34.62 2.87
3379 3625 6.825721 ACACAGTCTTGTTCTTCTTCAAATCT 59.174 34.615 0.00 0.00 34.62 2.40
3384 3630 4.997905 TGTTCTTCTTCAAATCTCGCAG 57.002 40.909 0.00 0.00 0.00 5.18
3388 3634 4.825422 TCTTCTTCAAATCTCGCAGTGAT 58.175 39.130 0.00 0.00 43.04 3.06
3400 3646 6.317789 TCTCGCAGTGATTTTCAAGATTTT 57.682 33.333 0.00 0.00 0.00 1.82
3457 3703 9.628500 TTGAGTTATCTCTGTTATACTAGAGCA 57.372 33.333 0.00 0.00 40.14 4.26
3574 3822 8.268850 AGAATATTAACTCTTCGTTGCACATT 57.731 30.769 0.00 0.00 37.05 2.71
3575 3823 9.378551 AGAATATTAACTCTTCGTTGCACATTA 57.621 29.630 0.00 0.00 37.05 1.90
3580 3828 8.766000 TTAACTCTTCGTTGCACATTATCTTA 57.234 30.769 0.00 0.00 37.05 2.10
3615 3863 8.984891 AAATCGCACAATGATTTTCAAGATAA 57.015 26.923 0.00 0.00 41.91 1.75
3616 3864 9.590451 AAATCGCACAATGATTTTCAAGATAAT 57.410 25.926 0.00 0.00 41.91 1.28
3617 3865 9.590451 AATCGCACAATGATTTTCAAGATAATT 57.410 25.926 0.00 0.00 32.25 1.40
3697 3945 2.288948 ACTCCAATTACGTGGCGTACAA 60.289 45.455 0.00 0.00 42.13 2.41
3707 4170 3.373439 ACGTGGCGTACAAGTTTGTTAAA 59.627 39.130 2.46 0.00 38.71 1.52
3713 4176 7.321984 GTGGCGTACAAGTTTGTTAAAATAGAC 59.678 37.037 2.46 0.00 42.35 2.59
3720 4183 8.682710 ACAAGTTTGTTAAAATAGACTGCTTCA 58.317 29.630 0.00 0.00 38.47 3.02
3757 4220 7.504924 TCTTTCGTTGGAATTTCAGTATTGT 57.495 32.000 0.00 0.00 30.88 2.71
3758 4221 7.936584 TCTTTCGTTGGAATTTCAGTATTGTT 58.063 30.769 0.00 0.00 30.88 2.83
3793 4256 8.396272 AGAATACTAACTCTTTGTTGCACATT 57.604 30.769 0.00 0.00 39.55 2.71
3796 4259 5.581605 ACTAACTCTTTGTTGCACATTGTG 58.418 37.500 12.54 12.54 39.55 3.33
3811 4277 4.974275 CACATTGTGCTGTTCTTCTTGAAG 59.026 41.667 3.43 4.13 35.01 3.02
3821 4287 4.024893 TGTTCTTCTTGAAGTCACGCAATC 60.025 41.667 9.80 0.00 35.01 2.67
3872 4338 6.318648 ACAGAATTTTCACACTGCTTGAGTTA 59.681 34.615 0.00 0.00 34.25 2.24
3968 4437 3.866651 TGTAGAGAATTTGCTGCTCTCC 58.133 45.455 11.61 1.15 39.54 3.71
4130 4605 5.883673 GGTACCTGCATCCTATGTGTTTAAA 59.116 40.000 4.06 0.00 0.00 1.52
4132 4607 7.068226 GGTACCTGCATCCTATGTGTTTAAATT 59.932 37.037 4.06 0.00 0.00 1.82
4142 4617 7.285629 TCCTATGTGTTTAAATTTGTGTGACCA 59.714 33.333 0.00 0.00 0.00 4.02
4143 4618 8.087750 CCTATGTGTTTAAATTTGTGTGACCAT 58.912 33.333 0.00 0.00 0.00 3.55
4144 4619 7.712264 ATGTGTTTAAATTTGTGTGACCATG 57.288 32.000 0.00 0.00 0.00 3.66
4183 4660 3.244146 TGTTTGCCTGCACAAATATTGCT 60.244 39.130 5.85 0.00 41.31 3.91
4185 4662 1.132834 TGCCTGCACAAATATTGCTCG 59.867 47.619 0.00 0.00 40.86 5.03
4200 4678 3.746949 CTCGCTGCATGGTCCCTCC 62.747 68.421 0.00 0.00 0.00 4.30
4204 4682 2.933287 TGCATGGTCCCTCCGGTT 60.933 61.111 0.00 0.00 39.52 4.44
4218 4697 4.324267 CCTCCGGTTTTGTGAAACTAGAT 58.676 43.478 0.00 0.00 43.68 1.98
4220 4699 5.334879 CCTCCGGTTTTGTGAAACTAGATTG 60.335 44.000 0.00 0.00 43.68 2.67
4250 4731 7.066163 TGGAGTGTTCTGCATTAGACAAATATG 59.934 37.037 0.00 0.00 37.12 1.78
4259 4740 9.821662 CTGCATTAGACAAATATGTATGATGTG 57.178 33.333 9.19 1.88 43.09 3.21
4264 4745 5.532406 AGACAAATATGTATGATGTGTGCCC 59.468 40.000 0.00 0.00 40.74 5.36
4281 4762 2.126596 CCCAAAGCAGGCACACACA 61.127 57.895 0.00 0.00 0.00 3.72
4324 4805 6.202188 GCTGCAGTGTAGTTGTTTCTTAGTTA 59.798 38.462 16.64 0.00 0.00 2.24
4353 4834 8.458573 TTCTTTTTGTATCTGTTTGCTCCTTA 57.541 30.769 0.00 0.00 0.00 2.69
4362 4843 8.957466 GTATCTGTTTGCTCCTTATACCTTTTT 58.043 33.333 0.00 0.00 0.00 1.94
4395 4876 2.158943 GGAGCTAGACCGCAATTAGGTT 60.159 50.000 6.28 1.06 43.01 3.50
4397 4878 4.262506 GGAGCTAGACCGCAATTAGGTTAT 60.263 45.833 6.28 2.44 43.01 1.89
4398 4879 4.884247 AGCTAGACCGCAATTAGGTTATC 58.116 43.478 6.28 0.00 43.01 1.75
4401 4882 4.338379 AGACCGCAATTAGGTTATCTCC 57.662 45.455 6.28 0.00 43.01 3.71
4402 4883 3.071167 AGACCGCAATTAGGTTATCTCCC 59.929 47.826 6.28 0.00 43.01 4.30
4408 4889 6.053005 CGCAATTAGGTTATCTCCCAACTAA 58.947 40.000 0.00 0.00 0.00 2.24
4410 4891 7.307989 CGCAATTAGGTTATCTCCCAACTAATG 60.308 40.741 0.00 0.00 0.00 1.90
4411 4892 7.502561 GCAATTAGGTTATCTCCCAACTAATGT 59.497 37.037 0.00 0.00 0.00 2.71
4412 4893 9.408648 CAATTAGGTTATCTCCCAACTAATGTT 57.591 33.333 0.00 0.00 36.75 2.71
4414 4895 9.990868 ATTAGGTTATCTCCCAACTAATGTTTT 57.009 29.630 0.00 0.00 33.52 2.43
4449 4948 8.978874 AATAGTAATATCACCATTGCTGTTGA 57.021 30.769 0.00 0.00 33.15 3.18
4588 5087 3.502191 TTTGCTTTGACACTGAACACC 57.498 42.857 0.00 0.00 0.00 4.16
4597 5096 1.000955 ACACTGAACACCGGAGATGTC 59.999 52.381 9.46 1.49 0.00 3.06
4803 5304 3.782244 GCTGGAGTGTTCTGCGCG 61.782 66.667 0.00 0.00 34.70 6.86
4821 5322 0.739462 CGATAGTTTCGCACCCAGCA 60.739 55.000 0.00 0.00 46.13 4.41
5014 5522 2.090524 GTTTACGCGTGGACTCCCG 61.091 63.158 24.59 0.00 34.29 5.14
5114 5622 7.905604 CTGTAAGTATCTCATTTTGTGTGGA 57.094 36.000 0.00 0.00 0.00 4.02
5117 5625 5.241403 AGTATCTCATTTTGTGTGGACCA 57.759 39.130 0.00 0.00 0.00 4.02
5118 5626 5.819991 AGTATCTCATTTTGTGTGGACCAT 58.180 37.500 0.00 0.00 0.00 3.55
5119 5627 5.882557 AGTATCTCATTTTGTGTGGACCATC 59.117 40.000 0.00 0.00 0.00 3.51
5121 5629 4.728772 TCTCATTTTGTGTGGACCATCTT 58.271 39.130 0.00 0.00 0.00 2.40
5123 5631 4.728772 TCATTTTGTGTGGACCATCTTCT 58.271 39.130 0.00 0.00 0.00 2.85
5124 5632 5.875224 TCATTTTGTGTGGACCATCTTCTA 58.125 37.500 0.00 0.00 0.00 2.10
5125 5633 5.705441 TCATTTTGTGTGGACCATCTTCTAC 59.295 40.000 0.00 0.00 0.00 2.59
5126 5634 4.698201 TTTGTGTGGACCATCTTCTACA 57.302 40.909 0.00 0.00 34.85 2.74
5128 5636 4.908601 TGTGTGGACCATCTTCTACATT 57.091 40.909 0.00 0.00 38.99 2.71
5130 5638 3.941483 GTGTGGACCATCTTCTACATTGG 59.059 47.826 0.00 0.00 38.99 3.16
5131 5639 2.945668 GTGGACCATCTTCTACATTGGC 59.054 50.000 0.00 0.00 32.26 4.52
5134 5642 2.173569 GACCATCTTCTACATTGGCCCT 59.826 50.000 0.00 0.00 32.26 5.19
5150 5658 2.557920 CCCTTAGAGGCCAGCTATTG 57.442 55.000 5.01 2.75 32.73 1.90
5253 5827 2.045131 GCTGAAGGGCTGAGGCTTG 61.045 63.158 5.84 0.00 38.73 4.01
5254 5828 1.681666 CTGAAGGGCTGAGGCTTGA 59.318 57.895 5.84 0.00 38.73 3.02
5255 5829 0.255318 CTGAAGGGCTGAGGCTTGAT 59.745 55.000 5.84 0.00 38.73 2.57
5257 5831 1.340405 TGAAGGGCTGAGGCTTGATTC 60.340 52.381 5.84 6.44 38.73 2.52
5258 5832 0.998145 AAGGGCTGAGGCTTGATTCT 59.002 50.000 5.84 0.00 38.73 2.40
5259 5833 1.885049 AGGGCTGAGGCTTGATTCTA 58.115 50.000 5.84 0.00 38.73 2.10
5260 5834 1.488393 AGGGCTGAGGCTTGATTCTAC 59.512 52.381 5.84 0.00 38.73 2.59
5265 5839 5.474825 GGCTGAGGCTTGATTCTACTATAC 58.525 45.833 0.00 0.00 38.73 1.47
5266 5840 5.245075 GGCTGAGGCTTGATTCTACTATACT 59.755 44.000 0.00 0.00 38.73 2.12
5268 5842 6.015856 GCTGAGGCTTGATTCTACTATACTCA 60.016 42.308 0.00 0.00 35.22 3.41
5317 5895 5.277779 GCCGAATTGGATGATGACGAAATAA 60.278 40.000 0.00 0.00 42.00 1.40
5323 5901 6.849588 TGGATGATGACGAAATAACTCATG 57.150 37.500 0.00 0.00 0.00 3.07
5344 5922 7.596494 TCATGTTTCATCCTTTTAAGAGCAAG 58.404 34.615 0.00 0.00 0.00 4.01
5345 5923 5.772521 TGTTTCATCCTTTTAAGAGCAAGC 58.227 37.500 0.00 0.00 0.00 4.01
5346 5924 4.685169 TTCATCCTTTTAAGAGCAAGCG 57.315 40.909 0.00 0.00 0.00 4.68
5347 5925 3.937814 TCATCCTTTTAAGAGCAAGCGA 58.062 40.909 0.00 0.00 0.00 4.93
5349 5927 4.943705 TCATCCTTTTAAGAGCAAGCGATT 59.056 37.500 0.00 0.00 0.00 3.34
5361 5943 5.415701 AGAGCAAGCGATTATTTTTCAGGAA 59.584 36.000 0.00 0.00 0.00 3.36
5370 5952 7.682021 GCGATTATTTTTCAGGAATGCCTAGTT 60.682 37.037 0.00 0.00 44.80 2.24
5374 5956 2.877097 TCAGGAATGCCTAGTTGCAA 57.123 45.000 0.00 0.00 44.80 4.08
5389 5971 5.193099 AGTTGCAACCCTGGTAATTAGAT 57.807 39.130 25.62 0.00 0.00 1.98
5400 5985 6.127054 CCCTGGTAATTAGATGTCAAGACAGA 60.127 42.308 8.99 0.00 45.48 3.41
5433 6018 2.528743 CGGCACATGATCGTCTGGC 61.529 63.158 0.00 6.67 0.00 4.85
5452 6038 1.936547 GCTTAGGACGATTGCCTGAAG 59.063 52.381 6.27 7.01 36.96 3.02
5466 6052 3.209410 GCCTGAAGCATAGCATACTTGT 58.791 45.455 0.00 0.00 42.97 3.16
5468 6054 4.701765 CCTGAAGCATAGCATACTTGTCT 58.298 43.478 0.00 0.00 0.00 3.41
5504 6098 0.678395 ATATGTCTCGGCTCTGGCAG 59.322 55.000 8.58 8.58 40.87 4.85
5520 6114 6.457528 GCTCTGGCAGTAAAAGCTGTAATTAG 60.458 42.308 15.27 0.00 38.65 1.73
5524 6118 4.094442 GCAGTAAAAGCTGTAATTAGGCGT 59.906 41.667 0.00 0.46 38.65 5.68
5527 6121 7.081976 CAGTAAAAGCTGTAATTAGGCGTTTT 58.918 34.615 20.26 17.68 38.27 2.43
5528 6122 7.060633 CAGTAAAAGCTGTAATTAGGCGTTTTG 59.939 37.037 20.26 13.85 38.27 2.44
5529 6123 3.487563 AGCTGTAATTAGGCGTTTTGC 57.512 42.857 0.00 0.00 45.38 3.68
5544 6138 6.796705 GCGTTTTGCCTATGGTTATACTAT 57.203 37.500 0.00 0.00 37.76 2.12
5545 6139 7.198306 GCGTTTTGCCTATGGTTATACTATT 57.802 36.000 0.00 0.00 37.76 1.73
5547 6141 8.132995 GCGTTTTGCCTATGGTTATACTATTTT 58.867 33.333 0.00 0.00 37.76 1.82
5549 6143 9.244799 GTTTTGCCTATGGTTATACTATTTTGC 57.755 33.333 0.00 0.00 0.00 3.68
5550 6144 8.760980 TTTGCCTATGGTTATACTATTTTGCT 57.239 30.769 0.00 0.00 0.00 3.91
5551 6145 7.744087 TGCCTATGGTTATACTATTTTGCTG 57.256 36.000 0.00 0.00 0.00 4.41
5552 6146 7.513856 TGCCTATGGTTATACTATTTTGCTGA 58.486 34.615 0.00 0.00 0.00 4.26
5574 6172 5.301551 TGATTTCACCAGCTTGTTACATTGT 59.698 36.000 0.00 0.00 0.00 2.71
5580 6178 4.043750 CCAGCTTGTTACATTGTTGTGTG 58.956 43.478 0.00 0.00 36.53 3.82
5600 6198 3.738282 GTGTTGAGTCTGCTGTGTTAGAG 59.262 47.826 0.00 0.00 0.00 2.43
5605 6203 1.344763 GTCTGCTGTGTTAGAGGGTGT 59.655 52.381 0.00 0.00 0.00 4.16
5618 6216 1.464997 GAGGGTGTTTGTTGCGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
5666 6264 0.107654 ATTGACTTACTGGCGCCCTC 60.108 55.000 26.77 9.06 0.00 4.30
5667 6265 2.180159 TTGACTTACTGGCGCCCTCC 62.180 60.000 26.77 6.55 0.00 4.30
5671 6269 0.539986 CTTACTGGCGCCCTCCTTTA 59.460 55.000 26.77 1.11 0.00 1.85
5673 6271 0.616679 TACTGGCGCCCTCCTTTAGT 60.617 55.000 26.77 20.70 0.00 2.24
5677 6275 0.533085 GGCGCCCTCCTTTAGTCATC 60.533 60.000 18.11 0.00 0.00 2.92
5680 6278 1.202580 CGCCCTCCTTTAGTCATCTGG 60.203 57.143 0.00 0.00 0.00 3.86
5686 6284 4.054671 CTCCTTTAGTCATCTGGCGATTC 58.945 47.826 0.00 0.00 0.00 2.52
5695 6293 4.025061 GTCATCTGGCGATTCTTCATCAAG 60.025 45.833 0.00 0.00 0.00 3.02
5702 6300 3.423571 CGATTCTTCATCAAGCAAGCAC 58.576 45.455 0.00 0.00 0.00 4.40
5719 6317 2.405892 CACACCTTGCTGTTTGTAGC 57.594 50.000 0.00 0.00 43.95 3.58
5720 6318 1.949525 CACACCTTGCTGTTTGTAGCT 59.050 47.619 0.00 0.00 44.01 3.32
5721 6319 3.138304 CACACCTTGCTGTTTGTAGCTA 58.862 45.455 0.00 0.00 44.01 3.32
5722 6320 3.187227 CACACCTTGCTGTTTGTAGCTAG 59.813 47.826 0.00 0.00 44.01 3.42
5723 6321 3.181454 ACACCTTGCTGTTTGTAGCTAGT 60.181 43.478 0.00 0.00 42.45 2.57
5724 6322 3.187227 CACCTTGCTGTTTGTAGCTAGTG 59.813 47.826 0.00 5.23 42.45 2.74
5725 6323 2.160417 CCTTGCTGTTTGTAGCTAGTGC 59.840 50.000 0.00 0.00 42.45 4.40
5726 6324 1.808411 TGCTGTTTGTAGCTAGTGCC 58.192 50.000 0.00 0.00 44.01 5.01
5727 6325 1.071542 TGCTGTTTGTAGCTAGTGCCA 59.928 47.619 0.00 0.00 44.01 4.92
5728 6326 2.290260 TGCTGTTTGTAGCTAGTGCCAT 60.290 45.455 0.00 0.00 44.01 4.40
5729 6327 3.055458 TGCTGTTTGTAGCTAGTGCCATA 60.055 43.478 0.00 0.00 44.01 2.74
5730 6328 3.309954 GCTGTTTGTAGCTAGTGCCATAC 59.690 47.826 0.00 0.00 40.52 2.39
5731 6329 3.869065 TGTTTGTAGCTAGTGCCATACC 58.131 45.455 0.00 0.00 40.80 2.73
5732 6330 3.262151 TGTTTGTAGCTAGTGCCATACCA 59.738 43.478 0.00 0.00 40.80 3.25
5746 6344 1.815613 CATACCACCATTGTCGGCAAA 59.184 47.619 6.51 0.00 38.21 3.68
5747 6345 2.208132 TACCACCATTGTCGGCAAAT 57.792 45.000 6.51 0.00 38.21 2.32
5748 6346 0.602562 ACCACCATTGTCGGCAAATG 59.397 50.000 6.51 5.77 38.21 2.32
5749 6347 0.737019 CCACCATTGTCGGCAAATGC 60.737 55.000 6.51 0.00 38.21 3.56
5775 6373 2.202703 GGGTACCGCGTACAGCTG 60.203 66.667 13.48 13.48 45.59 4.24
5809 6407 4.530388 GACCAAGTAAAAACCAAGCGTAC 58.470 43.478 0.00 0.00 0.00 3.67
5846 6444 5.050295 GTCGACCAAGTAAGAAAGGTTTCAG 60.050 44.000 3.51 0.00 39.61 3.02
5848 6446 5.526111 CGACCAAGTAAGAAAGGTTTCAGAA 59.474 40.000 5.30 0.00 39.61 3.02
6045 6735 0.106519 ATCCCATGTGGCAGCTTACC 60.107 55.000 0.00 0.00 0.00 2.85
6070 6763 2.127758 CGAGGCACGCAACGAAAC 60.128 61.111 0.00 0.00 34.51 2.78
6071 6764 2.594962 CGAGGCACGCAACGAAACT 61.595 57.895 0.00 0.00 34.51 2.66
6073 6766 0.028902 GAGGCACGCAACGAAACTTT 59.971 50.000 0.00 0.00 0.00 2.66
6074 6767 0.248458 AGGCACGCAACGAAACTTTG 60.248 50.000 0.00 0.00 0.00 2.77
6075 6768 1.206115 GGCACGCAACGAAACTTTGG 61.206 55.000 0.00 0.00 0.00 3.28
6076 6769 1.807242 GCACGCAACGAAACTTTGGC 61.807 55.000 0.00 0.00 0.00 4.52
6077 6770 1.065109 ACGCAACGAAACTTTGGCC 59.935 52.632 0.00 0.00 0.00 5.36
6078 6771 1.358759 CGCAACGAAACTTTGGCCT 59.641 52.632 3.32 0.00 0.00 5.19
6079 6772 0.934436 CGCAACGAAACTTTGGCCTG 60.934 55.000 3.32 0.00 0.00 4.85
6080 6773 0.597377 GCAACGAAACTTTGGCCTGG 60.597 55.000 3.32 0.00 0.00 4.45
6081 6774 0.597377 CAACGAAACTTTGGCCTGGC 60.597 55.000 11.05 11.05 0.00 4.85
6082 6775 0.755327 AACGAAACTTTGGCCTGGCT 60.755 50.000 19.68 0.00 0.00 4.75
6083 6776 0.109723 ACGAAACTTTGGCCTGGCTA 59.890 50.000 19.68 10.28 0.00 3.93
6084 6777 0.804989 CGAAACTTTGGCCTGGCTAG 59.195 55.000 19.68 15.24 0.00 3.42
6085 6778 1.610624 CGAAACTTTGGCCTGGCTAGA 60.611 52.381 19.68 6.90 0.00 2.43
6086 6779 2.728007 GAAACTTTGGCCTGGCTAGAT 58.272 47.619 19.68 5.86 0.00 1.98
6087 6780 3.681594 CGAAACTTTGGCCTGGCTAGATA 60.682 47.826 19.68 1.11 0.00 1.98
6088 6781 4.464947 GAAACTTTGGCCTGGCTAGATAT 58.535 43.478 19.68 0.00 0.00 1.63
6089 6782 4.526438 AACTTTGGCCTGGCTAGATATT 57.474 40.909 19.68 2.66 0.00 1.28
6090 6783 5.646692 AACTTTGGCCTGGCTAGATATTA 57.353 39.130 19.68 0.00 0.00 0.98
6091 6784 5.234466 ACTTTGGCCTGGCTAGATATTAG 57.766 43.478 19.68 6.71 0.00 1.73
6092 6785 4.907875 ACTTTGGCCTGGCTAGATATTAGA 59.092 41.667 19.68 0.00 0.00 2.10
6093 6786 5.012561 ACTTTGGCCTGGCTAGATATTAGAG 59.987 44.000 19.68 4.36 0.00 2.43
6094 6787 4.133526 TGGCCTGGCTAGATATTAGAGT 57.866 45.455 19.68 0.00 0.00 3.24
6095 6788 4.493618 TGGCCTGGCTAGATATTAGAGTT 58.506 43.478 19.68 0.00 0.00 3.01
6096 6789 5.651303 TGGCCTGGCTAGATATTAGAGTTA 58.349 41.667 19.68 0.00 0.00 2.24
6097 6790 5.717178 TGGCCTGGCTAGATATTAGAGTTAG 59.283 44.000 19.68 0.00 0.00 2.34
6098 6791 5.717654 GGCCTGGCTAGATATTAGAGTTAGT 59.282 44.000 19.68 0.00 0.00 2.24
6099 6792 6.211785 GGCCTGGCTAGATATTAGAGTTAGTT 59.788 42.308 19.68 0.00 0.00 2.24
6100 6793 7.256368 GGCCTGGCTAGATATTAGAGTTAGTTT 60.256 40.741 19.68 0.00 0.00 2.66
6101 6794 8.151596 GCCTGGCTAGATATTAGAGTTAGTTTT 58.848 37.037 12.43 0.00 0.00 2.43
6122 6815 9.793259 AGTTTTTAACTCATGACTAATCCTGAA 57.207 29.630 0.00 0.00 37.02 3.02
6123 6816 9.827411 GTTTTTAACTCATGACTAATCCTGAAC 57.173 33.333 0.00 0.00 30.17 3.18
6124 6817 9.793259 TTTTTAACTCATGACTAATCCTGAACT 57.207 29.630 0.00 0.00 30.17 3.01
6127 6820 9.871238 TTAACTCATGACTAATCCTGAACTAAC 57.129 33.333 0.00 0.00 30.17 2.34
6128 6821 7.726033 ACTCATGACTAATCCTGAACTAACT 57.274 36.000 0.00 0.00 30.17 2.24
6129 6822 7.777095 ACTCATGACTAATCCTGAACTAACTC 58.223 38.462 0.00 0.00 30.17 3.01
6130 6823 7.617723 ACTCATGACTAATCCTGAACTAACTCT 59.382 37.037 0.00 0.00 30.17 3.24
6131 6824 9.126151 CTCATGACTAATCCTGAACTAACTCTA 57.874 37.037 0.00 0.00 30.17 2.43
6132 6825 9.126151 TCATGACTAATCCTGAACTAACTCTAG 57.874 37.037 0.00 0.00 0.00 2.43
6133 6826 8.908903 CATGACTAATCCTGAACTAACTCTAGT 58.091 37.037 0.00 0.00 40.25 2.57
6134 6827 8.508883 TGACTAATCCTGAACTAACTCTAGTC 57.491 38.462 0.00 0.00 37.39 2.59
6135 6828 8.107729 TGACTAATCCTGAACTAACTCTAGTCA 58.892 37.037 0.00 0.00 40.01 3.41
6136 6829 8.880991 ACTAATCCTGAACTAACTCTAGTCAA 57.119 34.615 0.00 0.00 37.39 3.18
6137 6830 9.310449 ACTAATCCTGAACTAACTCTAGTCAAA 57.690 33.333 0.00 0.00 37.39 2.69
6151 6844 8.918202 ACTCTAGTCAAAAATATGTGTTTGGA 57.082 30.769 5.38 0.00 35.79 3.53
6152 6845 9.520515 ACTCTAGTCAAAAATATGTGTTTGGAT 57.479 29.630 5.38 0.00 35.79 3.41
6153 6846 9.778993 CTCTAGTCAAAAATATGTGTTTGGATG 57.221 33.333 5.38 0.00 35.79 3.51
6154 6847 9.513906 TCTAGTCAAAAATATGTGTTTGGATGA 57.486 29.630 5.38 0.00 35.79 2.92
6155 6848 9.559958 CTAGTCAAAAATATGTGTTTGGATGAC 57.440 33.333 5.38 0.00 35.79 3.06
6156 6849 7.950512 AGTCAAAAATATGTGTTTGGATGACA 58.049 30.769 5.38 0.00 35.12 3.58
6157 6850 8.084073 AGTCAAAAATATGTGTTTGGATGACAG 58.916 33.333 5.38 0.00 35.12 3.51
6158 6851 7.867403 GTCAAAAATATGTGTTTGGATGACAGT 59.133 33.333 5.38 0.00 35.79 3.55
6159 6852 7.866898 TCAAAAATATGTGTTTGGATGACAGTG 59.133 33.333 5.38 0.00 35.79 3.66
6160 6853 6.899393 AAATATGTGTTTGGATGACAGTGT 57.101 33.333 0.00 0.00 0.00 3.55
6161 6854 6.899393 AATATGTGTTTGGATGACAGTGTT 57.101 33.333 0.00 0.00 0.00 3.32
6162 6855 4.572985 ATGTGTTTGGATGACAGTGTTG 57.427 40.909 0.00 0.00 0.00 3.33
6163 6856 2.687425 TGTGTTTGGATGACAGTGTTGG 59.313 45.455 0.00 0.00 0.00 3.77
6164 6857 2.948979 GTGTTTGGATGACAGTGTTGGA 59.051 45.455 0.00 0.00 0.00 3.53
6165 6858 3.569701 GTGTTTGGATGACAGTGTTGGAT 59.430 43.478 0.00 0.00 0.00 3.41
6166 6859 4.037923 GTGTTTGGATGACAGTGTTGGATT 59.962 41.667 0.00 0.00 0.00 3.01
6167 6860 4.037803 TGTTTGGATGACAGTGTTGGATTG 59.962 41.667 0.00 0.00 0.00 2.67
6168 6861 3.786368 TGGATGACAGTGTTGGATTGA 57.214 42.857 0.00 0.00 0.00 2.57
6169 6862 3.411446 TGGATGACAGTGTTGGATTGAC 58.589 45.455 0.00 0.00 0.00 3.18
6170 6863 3.181446 TGGATGACAGTGTTGGATTGACA 60.181 43.478 0.00 0.00 0.00 3.58
6171 6864 3.820467 GGATGACAGTGTTGGATTGACAA 59.180 43.478 0.00 0.00 0.00 3.18
6172 6865 4.460382 GGATGACAGTGTTGGATTGACAAT 59.540 41.667 0.00 0.00 32.24 2.71
6173 6866 5.647658 GGATGACAGTGTTGGATTGACAATA 59.352 40.000 0.00 0.00 32.24 1.90
6174 6867 6.150976 GGATGACAGTGTTGGATTGACAATAA 59.849 38.462 0.00 0.00 32.24 1.40
6175 6868 6.951062 TGACAGTGTTGGATTGACAATAAA 57.049 33.333 0.00 0.00 32.24 1.40
6176 6869 7.523293 TGACAGTGTTGGATTGACAATAAAT 57.477 32.000 0.00 0.00 32.24 1.40
6177 6870 8.628630 TGACAGTGTTGGATTGACAATAAATA 57.371 30.769 0.00 0.00 32.24 1.40
6178 6871 8.511321 TGACAGTGTTGGATTGACAATAAATAC 58.489 33.333 0.00 7.56 32.24 1.89
6179 6872 8.402798 ACAGTGTTGGATTGACAATAAATACA 57.597 30.769 17.68 10.83 32.24 2.29
6180 6873 8.514594 ACAGTGTTGGATTGACAATAAATACAG 58.485 33.333 17.68 14.24 29.66 2.74
6181 6874 8.514594 CAGTGTTGGATTGACAATAAATACAGT 58.485 33.333 17.68 12.40 29.66 3.55
6182 6875 9.733556 AGTGTTGGATTGACAATAAATACAGTA 57.266 29.630 17.68 0.00 29.66 2.74
6183 6876 9.988350 GTGTTGGATTGACAATAAATACAGTAG 57.012 33.333 0.00 0.00 29.66 2.57
6184 6877 9.173021 TGTTGGATTGACAATAAATACAGTAGG 57.827 33.333 0.00 0.00 29.66 3.18
6185 6878 9.391006 GTTGGATTGACAATAAATACAGTAGGA 57.609 33.333 0.00 0.00 29.66 2.94
6186 6879 9.613428 TTGGATTGACAATAAATACAGTAGGAG 57.387 33.333 0.00 0.00 29.66 3.69
6187 6880 8.988060 TGGATTGACAATAAATACAGTAGGAGA 58.012 33.333 0.00 0.00 0.00 3.71
6188 6881 9.832445 GGATTGACAATAAATACAGTAGGAGAA 57.168 33.333 0.00 0.00 0.00 2.87
6193 6886 9.465985 GACAATAAATACAGTAGGAGAACTAGC 57.534 37.037 0.00 0.00 30.77 3.42
6194 6887 9.203163 ACAATAAATACAGTAGGAGAACTAGCT 57.797 33.333 0.00 0.00 30.77 3.32
6195 6888 9.685828 CAATAAATACAGTAGGAGAACTAGCTC 57.314 37.037 0.00 0.00 30.77 4.09
6207 6900 5.852827 GAGAACTAGCTCCAATTAGCATCT 58.147 41.667 3.15 1.54 45.30 2.90
6208 6901 5.852827 AGAACTAGCTCCAATTAGCATCTC 58.147 41.667 3.15 0.00 45.30 2.75
6209 6902 5.602145 AGAACTAGCTCCAATTAGCATCTCT 59.398 40.000 3.15 0.00 45.30 3.10
6210 6903 5.885449 ACTAGCTCCAATTAGCATCTCTT 57.115 39.130 3.15 0.00 45.30 2.85
6211 6904 5.609423 ACTAGCTCCAATTAGCATCTCTTG 58.391 41.667 3.15 0.00 45.30 3.02
6212 6905 4.767578 AGCTCCAATTAGCATCTCTTGA 57.232 40.909 3.15 0.00 45.30 3.02
6213 6906 4.706035 AGCTCCAATTAGCATCTCTTGAG 58.294 43.478 3.15 0.00 45.30 3.02
6214 6907 4.163839 AGCTCCAATTAGCATCTCTTGAGT 59.836 41.667 3.15 0.00 45.30 3.41
6215 6908 4.272991 GCTCCAATTAGCATCTCTTGAGTG 59.727 45.833 0.00 0.00 42.30 3.51
6216 6909 5.668471 CTCCAATTAGCATCTCTTGAGTGA 58.332 41.667 0.00 0.00 0.00 3.41
6217 6910 5.668471 TCCAATTAGCATCTCTTGAGTGAG 58.332 41.667 0.00 0.00 35.52 3.51
6218 6911 5.423290 TCCAATTAGCATCTCTTGAGTGAGA 59.577 40.000 0.00 0.00 45.71 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 1.140589 CTGTACTCAGCCTCGGCAG 59.859 63.158 11.02 1.89 44.88 4.85
224 228 0.620556 AGCGATGATGGACAGGGTTT 59.379 50.000 0.00 0.00 0.00 3.27
280 284 1.458639 GCCAAGTGCAACCTGCTTCT 61.459 55.000 0.00 0.00 45.31 2.85
282 286 2.501602 GGCCAAGTGCAACCTGCTT 61.502 57.895 0.00 0.00 45.31 3.91
359 363 0.179134 CGAAAGTCGAGGTAGGCAGG 60.179 60.000 0.00 0.00 43.74 4.85
429 435 4.513442 ACGTATATGCATGTTCAACACCT 58.487 39.130 10.16 0.00 0.00 4.00
460 471 1.465777 GGTGCAACGTACAATACCCAC 59.534 52.381 0.00 0.00 38.12 4.61
491 502 3.714798 ACAACAAGTTACAGAGGGGAGAA 59.285 43.478 0.00 0.00 0.00 2.87
557 571 0.530744 TGATCGTCCACTAGGCACAC 59.469 55.000 0.00 0.00 33.74 3.82
584 598 4.572389 AGAAAGGATTGTGTGCATCGATAC 59.428 41.667 0.00 0.00 0.00 2.24
630 645 3.898123 TCGAGATATTCCAAAGCTAGGCT 59.102 43.478 0.00 0.00 42.56 4.58
631 646 4.258702 TCGAGATATTCCAAAGCTAGGC 57.741 45.455 0.26 0.00 0.00 3.93
632 647 5.121454 GCATTCGAGATATTCCAAAGCTAGG 59.879 44.000 0.00 0.00 0.00 3.02
633 648 5.121454 GGCATTCGAGATATTCCAAAGCTAG 59.879 44.000 0.00 0.00 0.00 3.42
634 649 4.997395 GGCATTCGAGATATTCCAAAGCTA 59.003 41.667 0.00 0.00 0.00 3.32
635 650 3.817647 GGCATTCGAGATATTCCAAAGCT 59.182 43.478 0.00 0.00 0.00 3.74
636 651 3.565482 TGGCATTCGAGATATTCCAAAGC 59.435 43.478 0.00 0.00 0.00 3.51
637 652 5.756195 TTGGCATTCGAGATATTCCAAAG 57.244 39.130 0.00 0.00 0.00 2.77
638 653 8.408043 AATATTGGCATTCGAGATATTCCAAA 57.592 30.769 4.20 0.00 35.97 3.28
639 654 8.408043 AAATATTGGCATTCGAGATATTCCAA 57.592 30.769 2.79 2.79 36.67 3.53
640 655 8.298854 CAAAATATTGGCATTCGAGATATTCCA 58.701 33.333 0.00 0.00 32.69 3.53
641 656 8.299570 ACAAAATATTGGCATTCGAGATATTCC 58.700 33.333 0.00 0.00 41.01 3.01
645 660 8.279800 CGTTACAAAATATTGGCATTCGAGATA 58.720 33.333 0.00 0.00 41.01 1.98
646 661 7.132213 CGTTACAAAATATTGGCATTCGAGAT 58.868 34.615 0.00 0.00 41.01 2.75
647 662 6.482835 CGTTACAAAATATTGGCATTCGAGA 58.517 36.000 0.00 0.00 41.01 4.04
648 663 5.171337 GCGTTACAAAATATTGGCATTCGAG 59.829 40.000 0.00 0.00 41.01 4.04
649 664 5.031578 GCGTTACAAAATATTGGCATTCGA 58.968 37.500 0.00 0.00 41.01 3.71
650 665 4.206200 GGCGTTACAAAATATTGGCATTCG 59.794 41.667 0.00 0.00 41.01 3.34
651 666 5.231991 CAGGCGTTACAAAATATTGGCATTC 59.768 40.000 0.00 0.00 41.01 2.67
652 667 5.105554 TCAGGCGTTACAAAATATTGGCATT 60.106 36.000 0.00 0.00 41.01 3.56
653 668 4.400884 TCAGGCGTTACAAAATATTGGCAT 59.599 37.500 0.00 0.00 41.01 4.40
654 669 3.759086 TCAGGCGTTACAAAATATTGGCA 59.241 39.130 0.00 0.00 41.01 4.92
655 670 4.364415 TCAGGCGTTACAAAATATTGGC 57.636 40.909 0.00 0.00 41.01 4.52
656 671 5.748152 CCATTCAGGCGTTACAAAATATTGG 59.252 40.000 0.00 0.00 41.01 3.16
657 672 5.748152 CCCATTCAGGCGTTACAAAATATTG 59.252 40.000 0.00 0.00 38.15 1.90
658 673 5.681179 GCCCATTCAGGCGTTACAAAATATT 60.681 40.000 0.00 0.00 44.57 1.28
692 707 0.837272 GCCCACCCAGTAAGCTATCA 59.163 55.000 0.00 0.00 0.00 2.15
694 709 0.839946 CAGCCCACCCAGTAAGCTAT 59.160 55.000 0.00 0.00 31.23 2.97
695 710 1.271840 CCAGCCCACCCAGTAAGCTA 61.272 60.000 0.00 0.00 31.23 3.32
696 711 2.606587 CCAGCCCACCCAGTAAGCT 61.607 63.158 0.00 0.00 0.00 3.74
712 731 1.739466 GCGTGATTTTCTGCTGATCCA 59.261 47.619 0.00 0.00 0.00 3.41
737 756 1.705997 ATGGTGGGCCGGGTCTAATC 61.706 60.000 2.18 0.00 37.67 1.75
776 796 2.511600 GAAGGACACGGATGGGCG 60.512 66.667 0.00 0.00 0.00 6.13
974 997 2.047274 TTGGGCTGCTACGCTGTC 60.047 61.111 0.00 0.00 0.00 3.51
975 998 2.358737 GTTGGGCTGCTACGCTGT 60.359 61.111 0.00 0.00 0.00 4.40
976 999 3.127533 GGTTGGGCTGCTACGCTG 61.128 66.667 0.00 0.00 0.00 5.18
977 1000 4.760047 CGGTTGGGCTGCTACGCT 62.760 66.667 0.00 0.00 0.00 5.07
1075 1098 2.356667 GGCAGAGAAAGGGGTGGG 59.643 66.667 0.00 0.00 0.00 4.61
1340 1363 2.979814 TCAGGGATACATTGGACACG 57.020 50.000 0.00 0.00 39.74 4.49
1342 1365 8.040002 TGTTTATATCAGGGATACATTGGACA 57.960 34.615 0.00 0.00 39.74 4.02
1403 1426 6.682113 GCATTATGCATTGGAGACAAACTCAT 60.682 38.462 12.80 0.00 45.44 2.90
1406 1429 4.439153 CGCATTATGCATTGGAGACAAACT 60.439 41.667 17.75 0.00 46.06 2.66
1442 1468 6.763355 ACAGAACCATAGAATATGCTAGGTG 58.237 40.000 10.84 2.25 0.00 4.00
1445 1471 7.928167 TGACAACAGAACCATAGAATATGCTAG 59.072 37.037 0.00 0.00 0.00 3.42
1498 1533 6.367969 ACGTACAGGAATCATAAGACAAACAC 59.632 38.462 0.00 0.00 0.00 3.32
1570 1610 1.426751 ACCCTGGGTCTACGAACAAA 58.573 50.000 14.05 0.00 0.00 2.83
1575 1659 0.042131 ATCCAACCCTGGGTCTACGA 59.958 55.000 20.85 12.26 43.71 3.43
1649 1733 3.976942 GCACACACAAATCATTGACAGTC 59.023 43.478 0.00 0.00 38.94 3.51
1655 1739 2.468409 CACACGCACACACAAATCATTG 59.532 45.455 0.00 0.00 42.46 2.82
1675 1759 2.616634 TTACGCCTACAAACCACACA 57.383 45.000 0.00 0.00 0.00 3.72
1722 1810 7.972832 ATTTCATTACTAACTGGTTTCGTGA 57.027 32.000 0.00 0.00 0.00 4.35
1723 1811 9.916397 GATATTTCATTACTAACTGGTTTCGTG 57.084 33.333 0.00 0.00 0.00 4.35
1873 1962 1.741770 GGCGCCTTGACCACTGTAG 60.742 63.158 22.15 0.00 0.00 2.74
2291 2389 8.624367 AAAGCAATTTGGATTCATGATGAAAA 57.376 26.923 12.36 2.26 40.12 2.29
2292 2390 7.334921 GGAAAGCAATTTGGATTCATGATGAAA 59.665 33.333 12.36 0.00 40.12 2.69
2293 2391 6.819649 GGAAAGCAATTTGGATTCATGATGAA 59.180 34.615 10.65 10.65 41.09 2.57
2294 2392 6.155565 AGGAAAGCAATTTGGATTCATGATGA 59.844 34.615 0.00 0.00 0.00 2.92
2295 2393 6.346096 AGGAAAGCAATTTGGATTCATGATG 58.654 36.000 0.00 0.00 0.00 3.07
2296 2394 6.555463 AGGAAAGCAATTTGGATTCATGAT 57.445 33.333 0.00 0.00 0.00 2.45
2297 2395 6.363167 AAGGAAAGCAATTTGGATTCATGA 57.637 33.333 0.00 0.00 0.00 3.07
2308 2406 6.573094 GCAAATGTCTCCTAAGGAAAGCAATT 60.573 38.462 0.00 0.00 0.00 2.32
2366 2471 2.750141 AGCGATTGTCTCCTAGGGTA 57.250 50.000 9.46 0.00 0.00 3.69
2520 2629 5.049828 TCATTAATGCACTCCACTGTATCG 58.950 41.667 10.76 0.00 0.00 2.92
2579 2709 3.577848 TGTCCATGCAAATAGTTTGGCTT 59.422 39.130 0.00 0.00 40.94 4.35
2584 2714 3.443329 TGCGATGTCCATGCAAATAGTTT 59.557 39.130 0.00 0.00 35.33 2.66
2604 2734 2.925563 GTGCAAGTAAATTCATGGCTGC 59.074 45.455 0.00 0.00 0.00 5.25
2608 2738 5.125100 ACTGTGTGCAAGTAAATTCATGG 57.875 39.130 0.00 0.00 0.00 3.66
2680 2810 3.944015 GCTCAAGCAGTGTGGAAATATCT 59.056 43.478 0.00 0.00 41.59 1.98
2758 2888 3.731652 TTTGTCACCAGCAAGAAATGG 57.268 42.857 0.00 0.00 42.60 3.16
2869 3011 6.093495 AGCAAAATTATACTAGAGTTGCGCAA 59.907 34.615 21.02 21.02 43.48 4.85
2872 3020 6.257849 TCCAGCAAAATTATACTAGAGTTGCG 59.742 38.462 0.00 0.00 43.48 4.85
3026 3177 6.025793 ACCCCCATATAAATATATGCCACC 57.974 41.667 12.85 0.00 42.53 4.61
3229 3475 8.969267 CGTAATTGGAGTTTTGCTCTAGTATAG 58.031 37.037 0.00 0.00 43.62 1.31
3241 3487 2.223745 ACGCCACGTAATTGGAGTTTT 58.776 42.857 0.00 0.00 46.49 2.43
3357 3603 6.588552 CGAGATTTGAAGAAGAACAAGACTG 58.411 40.000 0.00 0.00 0.00 3.51
3361 3607 5.049818 ACTGCGAGATTTGAAGAAGAACAAG 60.050 40.000 0.00 0.00 0.00 3.16
3373 3619 5.692814 TCTTGAAAATCACTGCGAGATTTG 58.307 37.500 10.37 1.37 42.98 2.32
3414 3660 6.942532 AACTCAAGCAGTGTGAAAATTCTA 57.057 33.333 0.00 0.00 34.56 2.10
3457 3703 2.223745 ACGCCACGTAATTGGAGTTTT 58.776 42.857 0.00 0.00 46.49 2.43
3501 3747 9.277565 CCAATGAAAGATGTGTTAATAAACGAG 57.722 33.333 0.00 0.00 38.53 4.18
3548 3796 7.290857 TGTGCAACGAAGAGTTAATATTCTC 57.709 36.000 0.00 0.00 42.02 2.87
3574 3822 8.716646 TGTGCGATTTCAAGAAGAATAAGATA 57.283 30.769 0.00 0.00 35.83 1.98
3575 3823 7.615582 TGTGCGATTTCAAGAAGAATAAGAT 57.384 32.000 0.00 0.00 35.83 2.40
3577 3825 7.964559 TCATTGTGCGATTTCAAGAAGAATAAG 59.035 33.333 0.00 0.00 35.83 1.73
3580 3828 6.258230 TCATTGTGCGATTTCAAGAAGAAT 57.742 33.333 0.00 0.00 35.83 2.40
3630 3878 6.942532 AACTCAAGCAGTGTGAAAATTCTA 57.057 33.333 0.00 0.00 34.56 2.10
3731 4194 9.226606 ACAATACTGAAATTCCAACGAAAGATA 57.773 29.630 0.00 0.00 0.00 1.98
3793 4256 3.623060 GTGACTTCAAGAAGAACAGCACA 59.377 43.478 16.16 2.96 40.79 4.57
3796 4259 2.348966 GCGTGACTTCAAGAAGAACAGC 60.349 50.000 16.16 14.82 40.79 4.40
3797 4260 2.866156 TGCGTGACTTCAAGAAGAACAG 59.134 45.455 16.16 10.49 40.79 3.16
3798 4261 2.899976 TGCGTGACTTCAAGAAGAACA 58.100 42.857 16.16 12.02 40.79 3.18
3799 4262 3.944422 TTGCGTGACTTCAAGAAGAAC 57.056 42.857 16.16 11.98 40.79 3.01
3811 4277 6.695292 AAATCTTGAAAATGATTGCGTGAC 57.305 33.333 0.00 0.00 33.72 3.67
3872 4338 5.416326 AGTTTCGCTCTAGTACAACAGAGAT 59.584 40.000 18.24 0.00 40.68 2.75
3948 4417 2.863137 CGGAGAGCAGCAAATTCTCTAC 59.137 50.000 8.79 0.00 37.32 2.59
4042 4514 6.491745 TCACAAATCCAAGGCAACATAACTAA 59.508 34.615 0.00 0.00 41.41 2.24
4045 4517 4.923281 GTCACAAATCCAAGGCAACATAAC 59.077 41.667 0.00 0.00 41.41 1.89
4047 4519 4.406456 AGTCACAAATCCAAGGCAACATA 58.594 39.130 0.00 0.00 41.41 2.29
4050 4522 3.383761 CAAGTCACAAATCCAAGGCAAC 58.616 45.455 0.00 0.00 0.00 4.17
4088 4561 3.634397 ACCAGGATTGTCACATGTAGG 57.366 47.619 0.00 0.00 0.00 3.18
4089 4562 4.162320 AGGTACCAGGATTGTCACATGTAG 59.838 45.833 15.94 0.00 0.00 2.74
4090 4563 4.081142 CAGGTACCAGGATTGTCACATGTA 60.081 45.833 15.94 0.00 0.00 2.29
4091 4564 2.912956 AGGTACCAGGATTGTCACATGT 59.087 45.455 15.94 0.00 0.00 3.21
4092 4565 3.273434 CAGGTACCAGGATTGTCACATG 58.727 50.000 15.94 0.00 0.00 3.21
4102 4575 2.329267 CATAGGATGCAGGTACCAGGA 58.671 52.381 15.94 8.04 0.00 3.86
4103 4576 2.050144 ACATAGGATGCAGGTACCAGG 58.950 52.381 15.94 6.97 0.00 4.45
4130 4605 4.877378 AAATCAGCATGGTCACACAAAT 57.123 36.364 0.00 0.00 36.16 2.32
4132 4607 4.582240 TGTAAAATCAGCATGGTCACACAA 59.418 37.500 0.00 0.00 36.16 3.33
4142 4617 7.095102 GGCAAACAAAATCTGTAAAATCAGCAT 60.095 33.333 0.00 0.00 37.23 3.79
4143 4618 6.202570 GGCAAACAAAATCTGTAAAATCAGCA 59.797 34.615 0.00 0.00 37.23 4.41
4144 4619 6.424812 AGGCAAACAAAATCTGTAAAATCAGC 59.575 34.615 0.00 0.00 37.23 4.26
4183 4660 3.785859 GGAGGGACCATGCAGCGA 61.786 66.667 0.00 0.00 38.79 4.93
4200 4678 4.675114 GTGCAATCTAGTTTCACAAAACCG 59.325 41.667 0.00 0.00 44.87 4.44
4204 4682 5.129634 TCCAGTGCAATCTAGTTTCACAAA 58.870 37.500 13.68 0.00 0.00 2.83
4250 4731 1.134946 GCTTTGGGGCACACATCATAC 59.865 52.381 0.00 0.00 0.00 2.39
4264 4745 0.390124 ATTGTGTGTGCCTGCTTTGG 59.610 50.000 0.00 0.00 0.00 3.28
4324 4805 7.653311 GGAGCAAACAGATACAAAAAGAAATGT 59.347 33.333 0.00 0.00 0.00 2.71
4335 4816 6.808321 AGGTATAAGGAGCAAACAGATACA 57.192 37.500 0.00 0.00 0.00 2.29
4374 4855 1.413077 ACCTAATTGCGGTCTAGCTCC 59.587 52.381 0.00 0.00 38.13 4.70
4384 4865 4.451900 AGTTGGGAGATAACCTAATTGCG 58.548 43.478 0.00 0.00 33.33 4.85
4385 4866 7.502561 ACATTAGTTGGGAGATAACCTAATTGC 59.497 37.037 0.00 0.00 33.33 3.56
4397 4878 8.167392 TCCATTTCTAAAACATTAGTTGGGAGA 58.833 33.333 11.38 0.00 38.17 3.71
4398 4879 8.348285 TCCATTTCTAAAACATTAGTTGGGAG 57.652 34.615 11.38 0.00 38.17 4.30
4432 4931 3.719268 ACCTCAACAGCAATGGTGATA 57.281 42.857 19.98 2.99 34.70 2.15
4434 4933 2.363306 AACCTCAACAGCAATGGTGA 57.637 45.000 19.98 5.07 34.87 4.02
4449 4948 4.236527 ACAAGGAGACAACAGAAAACCT 57.763 40.909 0.00 0.00 0.00 3.50
4588 5087 2.389059 CTGCAGAATACGACATCTCCG 58.611 52.381 8.42 0.00 0.00 4.63
4597 5096 2.604914 AGTTTGATCGCTGCAGAATACG 59.395 45.455 20.43 11.76 0.00 3.06
4803 5304 1.009829 CTGCTGGGTGCGAAACTATC 58.990 55.000 0.00 0.00 46.63 2.08
4821 5322 4.792068 TGAGGAATGAAACAAGGTTGTCT 58.208 39.130 0.00 0.00 41.31 3.41
4961 5469 1.602311 AGTTTCTTCACAGCCTGCAG 58.398 50.000 6.78 6.78 0.00 4.41
5014 5522 1.193203 CCAATCATCACGATACGCAGC 59.807 52.381 0.00 0.00 32.51 5.25
5100 5608 4.763793 AGAAGATGGTCCACACAAAATGAG 59.236 41.667 0.00 0.00 0.00 2.90
5101 5609 4.728772 AGAAGATGGTCCACACAAAATGA 58.271 39.130 0.00 0.00 0.00 2.57
5108 5616 3.941483 CCAATGTAGAAGATGGTCCACAC 59.059 47.826 0.00 0.00 0.00 3.82
5109 5617 3.622206 GCCAATGTAGAAGATGGTCCACA 60.622 47.826 0.00 0.00 35.34 4.17
5114 5622 2.208872 AGGGCCAATGTAGAAGATGGT 58.791 47.619 6.18 0.00 35.34 3.55
5117 5625 4.349342 CCTCTAAGGGCCAATGTAGAAGAT 59.651 45.833 6.18 0.00 0.00 2.40
5118 5626 3.711704 CCTCTAAGGGCCAATGTAGAAGA 59.288 47.826 6.18 0.00 0.00 2.87
5119 5627 3.745797 GCCTCTAAGGGCCAATGTAGAAG 60.746 52.174 6.18 2.32 45.92 2.85
5121 5629 1.768870 GCCTCTAAGGGCCAATGTAGA 59.231 52.381 6.18 6.22 45.92 2.59
5131 5639 1.072965 CCAATAGCTGGCCTCTAAGGG 59.927 57.143 3.32 7.74 38.76 3.95
5150 5658 5.164022 CGATTAAGTTACCGTGAACAAGACC 60.164 44.000 0.21 0.00 0.00 3.85
5161 5669 6.642683 AGACAAATCACGATTAAGTTACCG 57.357 37.500 0.00 3.19 0.00 4.02
5238 5811 1.064832 AGAATCAAGCCTCAGCCCTTC 60.065 52.381 0.00 0.00 41.25 3.46
5317 5895 6.716628 TGCTCTTAAAAGGATGAAACATGAGT 59.283 34.615 0.00 0.00 0.00 3.41
5323 5901 4.853743 CGCTTGCTCTTAAAAGGATGAAAC 59.146 41.667 0.00 0.00 0.00 2.78
5344 5922 4.936891 AGGCATTCCTGAAAAATAATCGC 58.063 39.130 0.00 0.00 42.34 4.58
5345 5923 7.264373 ACTAGGCATTCCTGAAAAATAATCG 57.736 36.000 0.00 0.00 44.08 3.34
5346 5924 7.436376 GCAACTAGGCATTCCTGAAAAATAATC 59.564 37.037 0.00 0.00 44.08 1.75
5347 5925 7.093377 TGCAACTAGGCATTCCTGAAAAATAAT 60.093 33.333 0.00 0.00 44.08 1.28
5349 5927 5.714333 TGCAACTAGGCATTCCTGAAAAATA 59.286 36.000 0.00 0.00 44.08 1.40
5361 5943 0.323725 CCAGGGTTGCAACTAGGCAT 60.324 55.000 27.64 7.21 44.48 4.40
5370 5952 4.018870 TGACATCTAATTACCAGGGTTGCA 60.019 41.667 0.00 0.00 0.00 4.08
5374 5956 5.487488 TGTCTTGACATCTAATTACCAGGGT 59.513 40.000 0.00 0.00 0.00 4.34
5389 5971 8.463930 AAAATTGTTCCTAATCTGTCTTGACA 57.536 30.769 3.32 3.32 0.00 3.58
5400 5985 5.184864 TCATGTGCCGAAAATTGTTCCTAAT 59.815 36.000 0.00 0.00 0.00 1.73
5433 6018 1.936547 GCTTCAGGCAATCGTCCTAAG 59.063 52.381 0.00 0.00 41.35 2.18
5477 6067 6.096036 CCAGAGCCGAGACATATAATAACAG 58.904 44.000 0.00 0.00 0.00 3.16
5494 6084 0.807496 CAGCTTTTACTGCCAGAGCC 59.193 55.000 0.00 0.00 38.69 4.70
5504 6098 6.183359 GCAAAACGCCTAATTACAGCTTTTAC 60.183 38.462 7.32 2.23 29.12 2.01
5524 6118 9.196139 AGCAAAATAGTATAACCATAGGCAAAA 57.804 29.630 0.00 0.00 0.00 2.44
5527 6121 7.513856 TCAGCAAAATAGTATAACCATAGGCA 58.486 34.615 0.00 0.00 0.00 4.75
5528 6122 7.979444 TCAGCAAAATAGTATAACCATAGGC 57.021 36.000 0.00 0.00 0.00 3.93
5533 6127 8.682710 GGTGAAATCAGCAAAATAGTATAACCA 58.317 33.333 7.68 0.00 43.34 3.67
5549 6143 5.633830 ATGTAACAAGCTGGTGAAATCAG 57.366 39.130 0.00 0.00 35.49 2.90
5550 6144 5.301551 ACAATGTAACAAGCTGGTGAAATCA 59.698 36.000 0.00 0.00 0.00 2.57
5551 6145 5.772521 ACAATGTAACAAGCTGGTGAAATC 58.227 37.500 0.00 0.00 0.00 2.17
5552 6146 5.789643 ACAATGTAACAAGCTGGTGAAAT 57.210 34.783 0.00 0.00 0.00 2.17
5574 6172 2.009051 CACAGCAGACTCAACACACAA 58.991 47.619 0.00 0.00 0.00 3.33
5580 6178 3.321497 CCTCTAACACAGCAGACTCAAC 58.679 50.000 0.00 0.00 0.00 3.18
5600 6198 0.521735 GGAGATCGCAACAAACACCC 59.478 55.000 0.00 0.00 0.00 4.61
5618 6216 0.522076 GCTCTGCGAATTTTCTGCGG 60.522 55.000 0.00 8.62 35.73 5.69
5666 6264 4.065321 AGAATCGCCAGATGACTAAAGG 57.935 45.455 0.00 0.00 37.14 3.11
5667 6265 5.111989 TGAAGAATCGCCAGATGACTAAAG 58.888 41.667 0.00 0.00 37.14 1.85
5671 6269 3.133542 TGATGAAGAATCGCCAGATGACT 59.866 43.478 0.00 0.00 38.22 3.41
5673 6271 3.825143 TGATGAAGAATCGCCAGATGA 57.175 42.857 0.00 0.00 38.22 2.92
5677 6275 2.011947 TGCTTGATGAAGAATCGCCAG 58.988 47.619 0.00 0.00 38.22 4.85
5680 6278 2.159476 TGCTTGCTTGATGAAGAATCGC 60.159 45.455 0.00 0.00 38.22 4.58
5686 6284 1.884579 AGGTGTGCTTGCTTGATGAAG 59.115 47.619 0.00 0.00 0.00 3.02
5702 6300 3.187227 CACTAGCTACAAACAGCAAGGTG 59.813 47.826 0.00 0.00 44.35 4.00
5709 6307 3.871594 GGTATGGCACTAGCTACAAACAG 59.128 47.826 0.00 0.00 41.70 3.16
5712 6310 3.370103 GGTGGTATGGCACTAGCTACAAA 60.370 47.826 0.00 0.00 41.70 2.83
5713 6311 2.169769 GGTGGTATGGCACTAGCTACAA 59.830 50.000 0.00 0.00 41.70 2.41
5714 6312 1.760613 GGTGGTATGGCACTAGCTACA 59.239 52.381 0.00 0.00 41.70 2.74
5715 6313 1.760613 TGGTGGTATGGCACTAGCTAC 59.239 52.381 0.00 0.00 41.70 3.58
5716 6314 2.168458 TGGTGGTATGGCACTAGCTA 57.832 50.000 0.00 0.00 41.70 3.32
5717 6315 1.511613 ATGGTGGTATGGCACTAGCT 58.488 50.000 0.00 0.00 41.70 3.32
5718 6316 1.949525 CAATGGTGGTATGGCACTAGC 59.050 52.381 0.00 0.00 36.71 3.42
5719 6317 3.206150 GACAATGGTGGTATGGCACTAG 58.794 50.000 0.00 0.00 0.00 2.57
5720 6318 2.419436 CGACAATGGTGGTATGGCACTA 60.419 50.000 0.00 0.00 0.00 2.74
5721 6319 1.678728 CGACAATGGTGGTATGGCACT 60.679 52.381 0.00 0.00 0.00 4.40
5722 6320 0.732571 CGACAATGGTGGTATGGCAC 59.267 55.000 0.00 0.00 0.00 5.01
5723 6321 0.393673 CCGACAATGGTGGTATGGCA 60.394 55.000 0.00 0.00 0.00 4.92
5724 6322 1.724582 GCCGACAATGGTGGTATGGC 61.725 60.000 0.00 0.00 34.18 4.40
5725 6323 0.393673 TGCCGACAATGGTGGTATGG 60.394 55.000 0.00 0.00 0.00 2.74
5726 6324 1.458398 TTGCCGACAATGGTGGTATG 58.542 50.000 0.00 0.00 0.00 2.39
5727 6325 2.208132 TTTGCCGACAATGGTGGTAT 57.792 45.000 0.00 0.00 35.21 2.73
5728 6326 1.815613 CATTTGCCGACAATGGTGGTA 59.184 47.619 0.00 0.00 35.21 3.25
5729 6327 0.602562 CATTTGCCGACAATGGTGGT 59.397 50.000 0.00 0.00 35.21 4.16
5730 6328 0.737019 GCATTTGCCGACAATGGTGG 60.737 55.000 0.00 0.00 35.21 4.61
5731 6329 1.072116 CGCATTTGCCGACAATGGTG 61.072 55.000 0.00 0.00 35.21 4.17
5732 6330 1.212490 CGCATTTGCCGACAATGGT 59.788 52.632 0.00 0.00 35.21 3.55
5746 6344 1.078426 GGTACCCAGACTTGCGCAT 60.078 57.895 12.75 0.00 0.00 4.73
5747 6345 2.345991 GGTACCCAGACTTGCGCA 59.654 61.111 5.66 5.66 0.00 6.09
5748 6346 2.813908 CGGTACCCAGACTTGCGC 60.814 66.667 6.25 0.00 0.00 6.09
5749 6347 2.813908 GCGGTACCCAGACTTGCG 60.814 66.667 6.25 0.00 0.00 4.85
5764 6362 2.067616 GTACAACCAGCTGTACGCG 58.932 57.895 13.81 3.53 41.56 6.01
5775 6373 0.032540 ACTTGGTCGACGGTACAACC 59.967 55.000 9.92 0.00 34.05 3.77
5809 6407 1.001048 TGGTCGACTGTAGAACAACCG 60.001 52.381 16.46 0.00 31.60 4.44
5846 6444 2.761889 CGTACGAAAATAGCGCGTTTTC 59.238 45.455 28.65 28.65 40.45 2.29
5848 6446 1.720852 ACGTACGAAAATAGCGCGTTT 59.279 42.857 24.41 4.71 39.24 3.60
6053 6746 2.101209 AAGTTTCGTTGCGTGCCTCG 62.101 55.000 0.00 0.00 43.12 4.63
6067 6760 2.907458 ATCTAGCCAGGCCAAAGTTT 57.093 45.000 8.22 0.00 0.00 2.66
6070 6763 5.012561 ACTCTAATATCTAGCCAGGCCAAAG 59.987 44.000 8.22 3.54 0.00 2.77
6071 6764 4.907875 ACTCTAATATCTAGCCAGGCCAAA 59.092 41.667 8.22 0.00 0.00 3.28
6073 6766 4.133526 ACTCTAATATCTAGCCAGGCCA 57.866 45.455 8.22 0.00 0.00 5.36
6074 6767 5.717654 ACTAACTCTAATATCTAGCCAGGCC 59.282 44.000 8.22 0.00 0.00 5.19
6075 6768 6.844097 ACTAACTCTAATATCTAGCCAGGC 57.156 41.667 1.84 1.84 0.00 4.85
6096 6789 9.793259 TTCAGGATTAGTCATGAGTTAAAAACT 57.207 29.630 8.68 0.00 44.89 2.66
6097 6790 9.827411 GTTCAGGATTAGTCATGAGTTAAAAAC 57.173 33.333 8.68 0.00 44.89 2.43
6098 6791 9.793259 AGTTCAGGATTAGTCATGAGTTAAAAA 57.207 29.630 8.68 0.00 44.89 1.94
6101 6794 9.871238 GTTAGTTCAGGATTAGTCATGAGTTAA 57.129 33.333 8.68 5.27 44.89 2.01
6102 6795 9.256228 AGTTAGTTCAGGATTAGTCATGAGTTA 57.744 33.333 8.68 0.00 44.89 2.24
6103 6796 8.140112 AGTTAGTTCAGGATTAGTCATGAGTT 57.860 34.615 8.68 0.00 44.89 3.01
6104 6797 7.617723 AGAGTTAGTTCAGGATTAGTCATGAGT 59.382 37.037 8.40 8.40 44.89 3.41
6105 6798 8.006298 AGAGTTAGTTCAGGATTAGTCATGAG 57.994 38.462 0.00 0.00 44.89 2.90
6106 6799 7.962995 AGAGTTAGTTCAGGATTAGTCATGA 57.037 36.000 0.00 0.00 42.84 3.07
6107 6800 8.908903 ACTAGAGTTAGTTCAGGATTAGTCATG 58.091 37.037 0.00 0.00 36.75 3.07
6108 6801 9.127277 GACTAGAGTTAGTTCAGGATTAGTCAT 57.873 37.037 0.00 0.00 40.21 3.06
6109 6802 8.107729 TGACTAGAGTTAGTTCAGGATTAGTCA 58.892 37.037 0.00 6.46 40.21 3.41
6110 6803 8.508883 TGACTAGAGTTAGTTCAGGATTAGTC 57.491 38.462 0.00 0.00 40.21 2.59
6111 6804 8.880991 TTGACTAGAGTTAGTTCAGGATTAGT 57.119 34.615 0.00 0.00 40.21 2.24
6125 6818 9.349713 TCCAAACACATATTTTTGACTAGAGTT 57.650 29.630 0.00 0.00 35.13 3.01
6126 6819 8.918202 TCCAAACACATATTTTTGACTAGAGT 57.082 30.769 0.00 0.00 35.13 3.24
6127 6820 9.778993 CATCCAAACACATATTTTTGACTAGAG 57.221 33.333 0.00 0.00 35.13 2.43
6128 6821 9.513906 TCATCCAAACACATATTTTTGACTAGA 57.486 29.630 0.00 0.00 35.13 2.43
6129 6822 9.559958 GTCATCCAAACACATATTTTTGACTAG 57.440 33.333 0.00 0.00 35.13 2.57
6130 6823 9.072375 TGTCATCCAAACACATATTTTTGACTA 57.928 29.630 0.00 0.00 35.13 2.59
6131 6824 7.950512 TGTCATCCAAACACATATTTTTGACT 58.049 30.769 0.00 0.00 35.13 3.41
6132 6825 7.867403 ACTGTCATCCAAACACATATTTTTGAC 59.133 33.333 0.00 0.00 35.13 3.18
6133 6826 7.866898 CACTGTCATCCAAACACATATTTTTGA 59.133 33.333 0.00 0.00 35.13 2.69
6134 6827 7.652909 ACACTGTCATCCAAACACATATTTTTG 59.347 33.333 0.00 0.00 33.30 2.44
6135 6828 7.725251 ACACTGTCATCCAAACACATATTTTT 58.275 30.769 0.00 0.00 0.00 1.94
6136 6829 7.288810 ACACTGTCATCCAAACACATATTTT 57.711 32.000 0.00 0.00 0.00 1.82
6137 6830 6.899393 ACACTGTCATCCAAACACATATTT 57.101 33.333 0.00 0.00 0.00 1.40
6138 6831 6.294675 CCAACACTGTCATCCAAACACATATT 60.295 38.462 0.00 0.00 0.00 1.28
6139 6832 5.183713 CCAACACTGTCATCCAAACACATAT 59.816 40.000 0.00 0.00 0.00 1.78
6140 6833 4.518590 CCAACACTGTCATCCAAACACATA 59.481 41.667 0.00 0.00 0.00 2.29
6141 6834 3.318839 CCAACACTGTCATCCAAACACAT 59.681 43.478 0.00 0.00 0.00 3.21
6142 6835 2.687425 CCAACACTGTCATCCAAACACA 59.313 45.455 0.00 0.00 0.00 3.72
6143 6836 2.948979 TCCAACACTGTCATCCAAACAC 59.051 45.455 0.00 0.00 0.00 3.32
6144 6837 3.289407 TCCAACACTGTCATCCAAACA 57.711 42.857 0.00 0.00 0.00 2.83
6145 6838 4.278170 TCAATCCAACACTGTCATCCAAAC 59.722 41.667 0.00 0.00 0.00 2.93
6146 6839 4.278170 GTCAATCCAACACTGTCATCCAAA 59.722 41.667 0.00 0.00 0.00 3.28
6147 6840 3.820467 GTCAATCCAACACTGTCATCCAA 59.180 43.478 0.00 0.00 0.00 3.53
6148 6841 3.181446 TGTCAATCCAACACTGTCATCCA 60.181 43.478 0.00 0.00 0.00 3.41
6149 6842 3.411446 TGTCAATCCAACACTGTCATCC 58.589 45.455 0.00 0.00 0.00 3.51
6150 6843 5.633830 ATTGTCAATCCAACACTGTCATC 57.366 39.130 0.00 0.00 0.00 2.92
6151 6844 7.523293 TTTATTGTCAATCCAACACTGTCAT 57.477 32.000 0.07 0.00 0.00 3.06
6152 6845 6.951062 TTTATTGTCAATCCAACACTGTCA 57.049 33.333 0.07 0.00 0.00 3.58
6153 6846 8.511321 TGTATTTATTGTCAATCCAACACTGTC 58.489 33.333 0.07 0.00 0.00 3.51
6154 6847 8.402798 TGTATTTATTGTCAATCCAACACTGT 57.597 30.769 0.07 0.00 0.00 3.55
6155 6848 8.514594 ACTGTATTTATTGTCAATCCAACACTG 58.485 33.333 0.07 3.41 0.00 3.66
6156 6849 8.635765 ACTGTATTTATTGTCAATCCAACACT 57.364 30.769 0.07 0.00 0.00 3.55
6157 6850 9.988350 CTACTGTATTTATTGTCAATCCAACAC 57.012 33.333 0.07 0.00 0.00 3.32
6158 6851 9.173021 CCTACTGTATTTATTGTCAATCCAACA 57.827 33.333 0.07 2.68 0.00 3.33
6159 6852 9.391006 TCCTACTGTATTTATTGTCAATCCAAC 57.609 33.333 0.07 0.00 0.00 3.77
6160 6853 9.613428 CTCCTACTGTATTTATTGTCAATCCAA 57.387 33.333 0.07 0.00 0.00 3.53
6161 6854 8.988060 TCTCCTACTGTATTTATTGTCAATCCA 58.012 33.333 0.07 0.00 0.00 3.41
6162 6855 9.832445 TTCTCCTACTGTATTTATTGTCAATCC 57.168 33.333 0.07 0.00 0.00 3.01
6167 6860 9.465985 GCTAGTTCTCCTACTGTATTTATTGTC 57.534 37.037 0.00 0.00 0.00 3.18
6168 6861 9.203163 AGCTAGTTCTCCTACTGTATTTATTGT 57.797 33.333 0.00 0.00 0.00 2.71
6169 6862 9.685828 GAGCTAGTTCTCCTACTGTATTTATTG 57.314 37.037 0.00 0.00 0.00 1.90
6184 6877 5.852827 AGATGCTAATTGGAGCTAGTTCTC 58.147 41.667 6.54 0.00 43.27 2.87
6185 6878 5.602145 AGAGATGCTAATTGGAGCTAGTTCT 59.398 40.000 6.54 0.29 43.27 3.01
6186 6879 5.852827 AGAGATGCTAATTGGAGCTAGTTC 58.147 41.667 0.00 0.00 43.27 3.01
6187 6880 5.885449 AGAGATGCTAATTGGAGCTAGTT 57.115 39.130 2.08 0.00 43.27 2.24
6188 6881 5.365025 TCAAGAGATGCTAATTGGAGCTAGT 59.635 40.000 2.08 0.00 43.27 2.57
6189 6882 5.851720 TCAAGAGATGCTAATTGGAGCTAG 58.148 41.667 2.08 0.00 43.27 3.42
6190 6883 5.365025 ACTCAAGAGATGCTAATTGGAGCTA 59.635 40.000 3.73 0.00 43.27 3.32
6191 6884 4.163839 ACTCAAGAGATGCTAATTGGAGCT 59.836 41.667 3.73 0.00 43.27 4.09
6192 6885 4.272991 CACTCAAGAGATGCTAATTGGAGC 59.727 45.833 3.73 0.00 43.16 4.70
6193 6886 5.668471 TCACTCAAGAGATGCTAATTGGAG 58.332 41.667 3.73 0.00 0.00 3.86
6194 6887 5.423290 TCTCACTCAAGAGATGCTAATTGGA 59.577 40.000 3.73 0.00 39.62 3.53
6195 6888 5.668471 TCTCACTCAAGAGATGCTAATTGG 58.332 41.667 3.73 0.00 39.62 3.16
6224 6917 4.079253 GAGATGCTCTAACCCACCAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
6225 6918 3.561313 GGAGATGCTCTAACCCACCAAAA 60.561 47.826 0.00 0.00 0.00 2.44
6226 6919 2.026262 GGAGATGCTCTAACCCACCAAA 60.026 50.000 0.00 0.00 0.00 3.28
6227 6920 1.559682 GGAGATGCTCTAACCCACCAA 59.440 52.381 0.00 0.00 0.00 3.67
6228 6921 1.204146 GGAGATGCTCTAACCCACCA 58.796 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.