Multiple sequence alignment - TraesCS2D01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G314300 chr2D 100.000 8723 0 0 1 8723 404084994 404093716 0.000000e+00 16109.0
1 TraesCS2D01G314300 chr2D 81.467 1295 173 48 3495 4740 404040538 404041814 0.000000e+00 1000.0
2 TraesCS2D01G314300 chr2D 82.820 1071 149 22 5614 6659 404042966 404044026 0.000000e+00 926.0
3 TraesCS2D01G314300 chr2D 94.565 92 5 0 2540 2631 534925464 534925555 9.130000e-30 143.0
4 TraesCS2D01G314300 chr2D 75.294 340 59 16 4833 5169 404042014 404042331 1.180000e-28 139.0
5 TraesCS2D01G314300 chr2D 88.889 108 11 1 2541 2647 302248097 302247990 1.980000e-26 132.0
6 TraesCS2D01G314300 chr2D 100.000 43 0 0 8372 8414 404093322 404093364 7.260000e-11 80.5
7 TraesCS2D01G314300 chr2D 100.000 43 0 0 8329 8371 404093365 404093407 7.260000e-11 80.5
8 TraesCS2D01G314300 chr2A 97.010 6255 127 20 514 6719 542453796 542460039 0.000000e+00 10460.0
9 TraesCS2D01G314300 chr2A 92.401 1566 38 39 6717 8247 542460080 542461599 0.000000e+00 2158.0
10 TraesCS2D01G314300 chr2A 82.099 1229 166 40 3553 4740 542385616 542386831 0.000000e+00 1002.0
11 TraesCS2D01G314300 chr2A 82.791 1075 150 23 5614 6663 542387984 542389048 0.000000e+00 928.0
12 TraesCS2D01G314300 chr2A 87.003 377 22 13 8372 8723 542462474 542462848 4.910000e-107 399.0
13 TraesCS2D01G314300 chr2A 75.000 340 60 13 4833 5169 542387031 542387348 5.490000e-27 134.0
14 TraesCS2D01G314300 chr2A 90.323 62 3 1 1868 1929 542455111 542455169 2.610000e-10 78.7
15 TraesCS2D01G314300 chr2B 96.393 3715 113 13 3014 6718 478115112 478118815 0.000000e+00 6098.0
16 TraesCS2D01G314300 chr2B 90.726 2340 131 23 3 2288 478112070 478114377 0.000000e+00 3040.0
17 TraesCS2D01G314300 chr2B 94.680 1203 44 13 6717 7914 478118856 478120043 0.000000e+00 1849.0
18 TraesCS2D01G314300 chr2B 82.315 1227 167 32 3553 4740 478104250 478105465 0.000000e+00 1018.0
19 TraesCS2D01G314300 chr2B 92.390 657 25 5 2287 2920 478114459 478115113 0.000000e+00 913.0
20 TraesCS2D01G314300 chr2B 81.979 1071 158 24 5614 6659 478106651 478107711 0.000000e+00 876.0
21 TraesCS2D01G314300 chr2B 81.356 472 53 22 7909 8366 478120066 478120516 1.390000e-92 351.0
22 TraesCS2D01G314300 chr2B 84.098 327 41 9 7108 7424 709836103 709835778 1.100000e-78 305.0
23 TraesCS2D01G314300 chr2B 94.505 91 5 0 2538 2628 354879122 354879212 3.280000e-29 141.0
24 TraesCS2D01G314300 chr2B 74.412 340 63 12 4833 5169 478105665 478105983 3.310000e-24 124.0
25 TraesCS2D01G314300 chr2B 90.323 62 3 1 1868 1929 478113881 478113939 2.610000e-10 78.7
26 TraesCS2D01G314300 chr3D 85.913 646 80 9 195 837 24569074 24569711 0.000000e+00 678.0
27 TraesCS2D01G314300 chr3D 87.243 243 22 6 7191 7424 562008993 562008751 1.440000e-67 268.0
28 TraesCS2D01G314300 chr6A 85.496 655 81 10 195 843 591940940 591940294 0.000000e+00 671.0
29 TraesCS2D01G314300 chrUn 85.452 653 83 10 195 845 136394704 136395346 0.000000e+00 669.0
30 TraesCS2D01G314300 chrUn 85.171 263 30 7 7171 7424 478215791 478216053 2.420000e-65 261.0
31 TraesCS2D01G314300 chr5B 85.626 647 80 9 195 836 710236260 710235622 0.000000e+00 667.0
32 TraesCS2D01G314300 chr3B 85.626 647 80 9 195 836 534159028 534159666 0.000000e+00 667.0
33 TraesCS2D01G314300 chr3B 94.175 103 6 0 2918 3020 479298476 479298374 3.260000e-34 158.0
34 TraesCS2D01G314300 chr7B 85.494 648 82 9 195 838 380072678 380073317 0.000000e+00 665.0
35 TraesCS2D01G314300 chr7B 90.909 110 10 0 2915 3024 706329051 706328942 1.960000e-31 148.0
36 TraesCS2D01G314300 chr7B 91.000 100 8 1 2526 2625 740996254 740996156 5.490000e-27 134.0
37 TraesCS2D01G314300 chr1D 85.538 650 79 11 196 840 466406491 466407130 0.000000e+00 665.0
38 TraesCS2D01G314300 chr1D 86.831 243 23 7 7191 7424 419285194 419284952 6.720000e-66 263.0
39 TraesCS2D01G314300 chr7A 84.404 327 40 9 7108 7424 685399766 685400091 2.360000e-80 311.0
40 TraesCS2D01G314300 chr7A 84.098 327 41 9 7108 7424 650540520 650540845 1.100000e-78 305.0
41 TraesCS2D01G314300 chr7A 91.818 110 7 2 2913 3020 203965937 203965828 1.520000e-32 152.0
42 TraesCS2D01G314300 chr7A 87.129 101 8 2 6989 7089 650540437 650540532 9.260000e-20 110.0
43 TraesCS2D01G314300 chr4D 87.243 243 22 7 7191 7424 468439360 468439118 1.440000e-67 268.0
44 TraesCS2D01G314300 chr4D 95.050 101 5 0 2916 3016 375382015 375381915 9.060000e-35 159.0
45 TraesCS2D01G314300 chr5D 95.050 101 5 0 2916 3016 266749353 266749453 9.060000e-35 159.0
46 TraesCS2D01G314300 chr5D 92.523 107 6 2 2910 3015 180472167 180472062 1.520000e-32 152.0
47 TraesCS2D01G314300 chr5D 86.525 141 14 5 2918 3056 266749453 266749316 5.460000e-32 150.0
48 TraesCS2D01G314300 chr1A 89.655 116 10 2 2919 3034 357777915 357777802 7.060000e-31 147.0
49 TraesCS2D01G314300 chr6B 90.741 108 5 5 2524 2626 485061180 485061287 1.180000e-28 139.0
50 TraesCS2D01G314300 chr4B 90.566 106 6 2 2528 2629 192792847 192792742 4.250000e-28 137.0
51 TraesCS2D01G314300 chr5A 88.889 108 9 3 2540 2647 679658441 679658545 7.110000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G314300 chr2D 404084994 404093716 8722 False 5423.333333 16109 100.000000 1 8723 3 chr2D.!!$F3 8722
1 TraesCS2D01G314300 chr2D 404040538 404044026 3488 False 688.333333 1000 79.860333 3495 6659 3 chr2D.!!$F2 3164
2 TraesCS2D01G314300 chr2A 542453796 542460039 6243 False 10460.000000 10460 97.010000 514 6719 1 chr2A.!!$F1 6205
3 TraesCS2D01G314300 chr2A 542460080 542462848 2768 False 1278.500000 2158 89.702000 6717 8723 2 chr2A.!!$F4 2006
4 TraesCS2D01G314300 chr2A 542385616 542389048 3432 False 688.000000 1002 79.963333 3553 6663 3 chr2A.!!$F3 3110
5 TraesCS2D01G314300 chr2B 478112070 478120516 8446 False 2054.950000 6098 90.978000 3 8366 6 chr2B.!!$F3 8363
6 TraesCS2D01G314300 chr2B 478104250 478107711 3461 False 672.666667 1018 79.568667 3553 6659 3 chr2B.!!$F2 3106
7 TraesCS2D01G314300 chr3D 24569074 24569711 637 False 678.000000 678 85.913000 195 837 1 chr3D.!!$F1 642
8 TraesCS2D01G314300 chr6A 591940294 591940940 646 True 671.000000 671 85.496000 195 843 1 chr6A.!!$R1 648
9 TraesCS2D01G314300 chrUn 136394704 136395346 642 False 669.000000 669 85.452000 195 845 1 chrUn.!!$F1 650
10 TraesCS2D01G314300 chr5B 710235622 710236260 638 True 667.000000 667 85.626000 195 836 1 chr5B.!!$R1 641
11 TraesCS2D01G314300 chr3B 534159028 534159666 638 False 667.000000 667 85.626000 195 836 1 chr3B.!!$F1 641
12 TraesCS2D01G314300 chr7B 380072678 380073317 639 False 665.000000 665 85.494000 195 838 1 chr7B.!!$F1 643
13 TraesCS2D01G314300 chr1D 466406491 466407130 639 False 665.000000 665 85.538000 196 840 1 chr1D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 766 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18 F
1531 1587 0.032678 CAGTGACTGGCGAGAAGTGT 59.967 55.000 4.28 0.00 0.00 3.55 F
3237 3420 1.040339 AGATCGGGACCACTCAGAGC 61.040 60.000 0.00 0.00 0.00 4.09 F
4115 4305 1.212751 CACATCGACTCGGACAGCA 59.787 57.895 0.00 0.00 0.00 4.41 F
4812 5125 2.396590 TCATTTGTTCCTACGGGAGC 57.603 50.000 0.00 0.00 43.29 4.70 F
6102 6776 0.525761 TAAATGGTTCAAGCGCTGGC 59.474 50.000 12.58 0.86 40.37 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 2492 3.721087 TTCCCATCCAAGAAAGTCTCC 57.279 47.619 0.00 0.0 0.00 3.71 R
3354 3539 0.179089 AAGAGTATGCAGCGCAGGAG 60.179 55.000 11.47 0.0 43.65 3.69 R
4353 4543 3.379372 CCAGCATGTGATAAACCAGAAGG 59.621 47.826 0.00 0.0 42.21 3.46 R
5979 6653 0.891904 GCAAAGGGAGGCCGTTTACA 60.892 55.000 0.00 0.0 39.21 2.41 R
6125 6799 1.558756 AGGGGTTCTTCTGCTCATCAG 59.441 52.381 0.00 0.0 44.21 2.90 R
7780 8526 3.261643 GGCAGACCTTTTTGATCCCATTT 59.738 43.478 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.710744 TCAAGTTTAGGATTTGAACTCTGGTC 59.289 38.462 0.00 0.00 32.79 4.02
55 56 5.238583 AGTTTAGGATTTGAACTCTGGTCG 58.761 41.667 0.00 0.00 0.00 4.79
56 57 4.884668 TTAGGATTTGAACTCTGGTCGT 57.115 40.909 0.00 0.00 0.00 4.34
58 59 2.900546 AGGATTTGAACTCTGGTCGTCT 59.099 45.455 0.00 0.00 0.00 4.18
64 74 0.753262 AACTCTGGTCGTCTGCTGTT 59.247 50.000 0.00 0.00 0.00 3.16
77 87 4.202101 CGTCTGCTGTTCTCCTAATCATCT 60.202 45.833 0.00 0.00 0.00 2.90
81 91 5.918608 TGCTGTTCTCCTAATCATCTAACC 58.081 41.667 0.00 0.00 0.00 2.85
89 99 8.985315 TCTCCTAATCATCTAACCGTAAGTTA 57.015 34.615 0.00 0.00 40.05 2.24
176 186 1.310933 TGAGACGTACCCCTTCGCTC 61.311 60.000 0.00 0.00 34.01 5.03
178 188 3.073101 ACGTACCCCTTCGCTCCC 61.073 66.667 0.00 0.00 0.00 4.30
180 190 2.582978 GTACCCCTTCGCTCCCAC 59.417 66.667 0.00 0.00 0.00 4.61
181 191 3.072468 TACCCCTTCGCTCCCACG 61.072 66.667 0.00 0.00 0.00 4.94
182 192 3.588817 TACCCCTTCGCTCCCACGA 62.589 63.158 0.00 0.00 41.04 4.35
183 193 2.866523 TACCCCTTCGCTCCCACGAT 62.867 60.000 0.00 0.00 42.54 3.73
184 194 2.107141 CCCTTCGCTCCCACGATC 59.893 66.667 0.00 0.00 42.54 3.69
185 195 2.107141 CCTTCGCTCCCACGATCC 59.893 66.667 0.00 0.00 42.54 3.36
186 196 2.721167 CCTTCGCTCCCACGATCCA 61.721 63.158 0.00 0.00 42.54 3.41
187 197 1.218047 CTTCGCTCCCACGATCCAA 59.782 57.895 0.00 0.00 42.54 3.53
197 207 3.321111 TCCCACGATCCAAGATTAGCTAC 59.679 47.826 0.00 0.00 0.00 3.58
247 257 2.818132 GGTCCGCCTCATCTCCTG 59.182 66.667 0.00 0.00 0.00 3.86
291 301 2.300967 TGGATCTCCGCCCTTTGCT 61.301 57.895 0.00 0.00 39.43 3.91
300 310 4.033776 CCCTTTGCTGGCGGGAGA 62.034 66.667 0.00 0.00 40.55 3.71
305 315 1.836999 TTTGCTGGCGGGAGAGCTTA 61.837 55.000 0.00 0.00 36.11 3.09
306 316 1.626356 TTGCTGGCGGGAGAGCTTAT 61.626 55.000 0.00 0.00 36.11 1.73
353 363 0.896940 AGGGTTTGTGCCATGCTCAG 60.897 55.000 0.00 0.00 33.64 3.35
460 471 2.203153 GGCGTGTGGAGGTGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
502 513 0.857287 GGTCGGTGTTTGTCTTCGAC 59.143 55.000 0.00 0.00 46.24 4.20
535 546 0.748450 TCCGGTCTTTGTTCGTCTGT 59.252 50.000 0.00 0.00 0.00 3.41
587 599 1.676529 TCTACGCTTCTCTTCATCGGG 59.323 52.381 0.00 0.00 0.00 5.14
591 603 0.249657 GCTTCTCTTCATCGGGCGAT 60.250 55.000 0.00 0.00 34.81 4.58
605 617 1.154150 GCGATGGTTGCTGTTCTGC 60.154 57.895 0.00 0.00 0.00 4.26
607 619 1.725641 CGATGGTTGCTGTTCTGCTA 58.274 50.000 3.65 0.00 0.00 3.49
614 626 2.744768 GCTGTTCTGCTACGCTGGC 61.745 63.158 0.00 0.00 0.00 4.85
641 653 2.271800 GGACCTTAGCACGATGACTTG 58.728 52.381 0.00 0.00 0.00 3.16
734 746 1.292223 GCTCCGGTGCTTGTAGTCA 59.708 57.895 20.97 0.00 0.00 3.41
754 766 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
794 807 6.157211 ACTTCTGGTGTTTTCTGTACTATCG 58.843 40.000 0.00 0.00 0.00 2.92
882 896 1.812571 CCAGGCCATTCTGTGTGTAAC 59.187 52.381 5.01 0.00 33.14 2.50
1108 1124 0.394352 AAATCGGCGCTCCAAATCCT 60.394 50.000 7.64 0.00 0.00 3.24
1109 1125 0.815615 AATCGGCGCTCCAAATCCTC 60.816 55.000 7.64 0.00 0.00 3.71
1110 1126 2.666596 ATCGGCGCTCCAAATCCTCC 62.667 60.000 7.64 0.00 0.00 4.30
1155 1171 1.300697 GAATCCCGACGAATCCCCG 60.301 63.158 0.00 0.00 0.00 5.73
1420 1438 6.699366 CATGTCTGCCTGAGATAGATTGTAT 58.301 40.000 0.00 0.00 31.63 2.29
1494 1550 2.715624 GGATGCGCCGTTGAATCC 59.284 61.111 4.18 5.58 32.32 3.01
1518 1574 1.429463 CTGTAACCGCCTTCAGTGAC 58.571 55.000 0.00 0.00 0.00 3.67
1531 1587 0.032678 CAGTGACTGGCGAGAAGTGT 59.967 55.000 4.28 0.00 0.00 3.55
1607 1663 2.731571 TAGATGGTGAGTGGCGCCC 61.732 63.158 26.77 15.80 46.97 6.13
1682 1738 1.802337 TTGCTACACCGACAGCGTCT 61.802 55.000 7.03 0.00 40.79 4.18
1845 1908 2.533266 GCATGTTTCTAGTGGCATTGC 58.467 47.619 0.00 0.00 0.00 3.56
1877 1940 6.985188 ACACCAGCTGTAGTTGTTATTATG 57.015 37.500 13.81 0.00 0.00 1.90
1939 2002 2.561478 ACACCGGCTTTAATCAGTGT 57.439 45.000 0.00 0.00 33.81 3.55
2333 2492 7.539712 ACATGATTTAATGTGAGTTACCTCG 57.460 36.000 0.00 0.00 39.32 4.63
2448 2607 4.989875 ATACAGCAGGATTAGCCAGAAT 57.010 40.909 0.00 0.00 40.02 2.40
2452 2611 1.869767 GCAGGATTAGCCAGAATCACG 59.130 52.381 0.00 0.00 37.53 4.35
2825 2986 4.940046 TGTAGTGTACTGGTAGCAGTAGAC 59.060 45.833 36.60 36.60 46.19 2.59
2990 3172 8.976471 GTACTAAAGTTAGTCCAAAGTTGAGTC 58.024 37.037 6.99 0.00 42.66 3.36
3237 3420 1.040339 AGATCGGGACCACTCAGAGC 61.040 60.000 0.00 0.00 0.00 4.09
3276 3459 3.766591 AGTTACTGCATGCACTAGACTCT 59.233 43.478 18.46 6.24 0.00 3.24
3378 3563 2.024414 TGCGCTGCATACTCTTCTAGA 58.976 47.619 9.73 0.00 31.71 2.43
3506 3691 6.932356 ATTTGCGACAATGAGATACTGATT 57.068 33.333 0.00 0.00 0.00 2.57
4115 4305 1.212751 CACATCGACTCGGACAGCA 59.787 57.895 0.00 0.00 0.00 4.41
4160 4350 6.430962 AATCTATCTAGAAAGGATGCTGCA 57.569 37.500 4.13 4.13 35.69 4.41
4353 4543 5.355350 AGTGAGCCAAGCAATAACTATGTTC 59.645 40.000 0.00 0.00 0.00 3.18
4812 5125 2.396590 TCATTTGTTCCTACGGGAGC 57.603 50.000 0.00 0.00 43.29 4.70
5065 5398 7.558444 TGTTGGTTGGTAGTTTGAAGATACTTT 59.442 33.333 0.00 0.00 0.00 2.66
5427 6066 8.840321 GTTGTATATTACTTGATCAGCATTGGT 58.160 33.333 0.00 0.00 0.00 3.67
5619 6258 5.627499 TTCACTTGTTTATGGAGTGATGC 57.373 39.130 6.29 0.00 46.36 3.91
5620 6259 3.684305 TCACTTGTTTATGGAGTGATGCG 59.316 43.478 1.60 0.00 43.38 4.73
5979 6653 5.830991 TGTCAACCATAAGCTTAAAGGTGTT 59.169 36.000 25.81 14.11 31.86 3.32
5999 6673 1.303806 TAAACGGCCTCCCTTTGCC 60.304 57.895 0.00 0.00 44.41 4.52
6102 6776 0.525761 TAAATGGTTCAAGCGCTGGC 59.474 50.000 12.58 0.86 40.37 4.85
6125 6799 1.269517 CGAGTCCTCATCTAGCTTGGC 60.270 57.143 0.00 0.00 0.00 4.52
6507 7205 4.422546 GGAATCGTATCCTACCGAAGAG 57.577 50.000 2.56 0.00 36.57 2.85
6987 7727 9.665719 ATTATGGGGTTTAGCAATAAACAAAAG 57.334 29.630 11.70 0.00 40.63 2.27
7022 7762 7.452880 TTGAAGTGGAAATGAAATCCTAGTG 57.547 36.000 0.00 0.00 37.85 2.74
7072 7814 6.778821 TCTGGATTTGGTAGATGTTTTGAGA 58.221 36.000 0.00 0.00 0.00 3.27
7073 7815 7.405292 TCTGGATTTGGTAGATGTTTTGAGAT 58.595 34.615 0.00 0.00 0.00 2.75
7432 8177 2.016905 ACTTCAGCTCTGTGGGTAGT 57.983 50.000 0.00 0.00 0.00 2.73
7780 8526 2.671619 GTTGCGCACCCTGCCTTA 60.672 61.111 11.12 0.00 41.12 2.69
7833 8581 9.887862 ATTTTATTGGGTCCAGATATCTCATTT 57.112 29.630 1.03 0.00 0.00 2.32
7907 8657 2.533018 ATTTAGGCCCCCTCCTACAT 57.467 50.000 0.00 0.00 38.37 2.29
8130 8946 2.375174 ACTTAAGTGCCATGAGGACCAA 59.625 45.455 7.48 0.00 36.89 3.67
8181 9001 6.310941 TGGAATCCTAGTGTTTCATTTCCAA 58.689 36.000 0.00 0.00 38.64 3.53
8182 9002 6.780031 TGGAATCCTAGTGTTTCATTTCCAAA 59.220 34.615 0.00 0.00 38.64 3.28
8183 9003 7.288852 TGGAATCCTAGTGTTTCATTTCCAAAA 59.711 33.333 0.00 0.00 38.64 2.44
8272 9883 4.212214 AGAGAAAAGAAGCAACGTTAGCAG 59.788 41.667 19.82 2.75 0.00 4.24
8339 9952 0.238289 CGAAATTTGCACGACAGGCT 59.762 50.000 0.00 0.00 0.00 4.58
8340 9953 1.463056 CGAAATTTGCACGACAGGCTA 59.537 47.619 0.00 0.00 0.00 3.93
8371 9984 2.159014 CCATCCATGGGCATGTTTGAAG 60.159 50.000 13.02 0.00 44.31 3.02
8372 9985 0.896923 TCCATGGGCATGTTTGAAGC 59.103 50.000 13.02 0.00 37.11 3.86
8373 9986 0.609151 CCATGGGCATGTTTGAAGCA 59.391 50.000 2.85 0.00 37.11 3.91
8375 9988 0.244450 ATGGGCATGTTTGAAGCACG 59.756 50.000 0.00 0.00 33.47 5.34
8376 9989 0.821301 TGGGCATGTTTGAAGCACGA 60.821 50.000 0.00 0.00 33.47 4.35
8377 9990 0.387239 GGGCATGTTTGAAGCACGAC 60.387 55.000 0.00 0.00 0.00 4.34
8382 9995 0.463654 TGTTTGAAGCACGACAGGCT 60.464 50.000 0.00 0.00 45.15 4.58
8383 9996 1.202592 TGTTTGAAGCACGACAGGCTA 60.203 47.619 0.00 0.00 41.66 3.93
8384 9997 2.076863 GTTTGAAGCACGACAGGCTAT 58.923 47.619 0.00 0.00 41.66 2.97
8385 9998 3.259064 GTTTGAAGCACGACAGGCTATA 58.741 45.455 0.00 0.00 41.66 1.31
8386 9999 3.819564 TTGAAGCACGACAGGCTATAT 57.180 42.857 0.00 0.00 41.66 0.86
8387 10000 4.929819 TTGAAGCACGACAGGCTATATA 57.070 40.909 0.00 0.00 41.66 0.86
8388 10001 5.468540 TTGAAGCACGACAGGCTATATAT 57.531 39.130 0.00 0.00 41.66 0.86
8389 10002 5.060662 TGAAGCACGACAGGCTATATATC 57.939 43.478 0.00 0.00 41.66 1.63
8390 10003 3.766676 AGCACGACAGGCTATATATCG 57.233 47.619 0.00 2.01 40.47 2.92
8391 10004 2.159366 AGCACGACAGGCTATATATCGC 60.159 50.000 0.61 0.61 40.47 4.58
8392 10005 2.415491 GCACGACAGGCTATATATCGCA 60.415 50.000 11.00 0.00 36.26 5.10
8393 10006 3.172050 CACGACAGGCTATATATCGCAC 58.828 50.000 11.00 1.57 36.26 5.34
8394 10007 2.163815 ACGACAGGCTATATATCGCACC 59.836 50.000 11.00 0.00 36.26 5.01
8395 10008 2.163613 CGACAGGCTATATATCGCACCA 59.836 50.000 11.00 0.00 0.00 4.17
8396 10009 3.181486 CGACAGGCTATATATCGCACCAT 60.181 47.826 11.00 0.00 0.00 3.55
8397 10010 4.363999 GACAGGCTATATATCGCACCATC 58.636 47.826 11.00 0.37 0.00 3.51
8398 10011 3.133003 ACAGGCTATATATCGCACCATCC 59.867 47.826 11.00 0.00 0.00 3.51
8399 10012 3.132824 CAGGCTATATATCGCACCATCCA 59.867 47.826 11.00 0.00 0.00 3.41
8400 10013 3.969976 AGGCTATATATCGCACCATCCAT 59.030 43.478 11.00 0.00 0.00 3.41
8401 10014 4.060900 GGCTATATATCGCACCATCCATG 58.939 47.826 11.00 0.00 0.00 3.66
8412 10025 1.487300 CCATCCATGGGCATGTTTGA 58.513 50.000 13.02 0.00 44.31 2.69
8413 10026 1.832366 CCATCCATGGGCATGTTTGAA 59.168 47.619 13.02 0.00 44.31 2.69
8414 10027 2.236644 CCATCCATGGGCATGTTTGAAA 59.763 45.455 13.02 0.00 44.31 2.69
8415 10028 3.307550 CCATCCATGGGCATGTTTGAAAA 60.308 43.478 13.02 0.00 44.31 2.29
8416 10029 3.681593 TCCATGGGCATGTTTGAAAAG 57.318 42.857 13.02 0.00 37.11 2.27
8417 10030 2.078392 CCATGGGCATGTTTGAAAAGC 58.922 47.619 2.85 0.00 37.11 3.51
8418 10031 2.550423 CCATGGGCATGTTTGAAAAGCA 60.550 45.455 2.85 0.00 42.58 3.91
8419 10032 2.529780 TGGGCATGTTTGAAAAGCAG 57.470 45.000 0.00 0.00 41.39 4.24
8420 10033 2.037901 TGGGCATGTTTGAAAAGCAGA 58.962 42.857 0.00 0.00 41.39 4.26
8421 10034 2.433604 TGGGCATGTTTGAAAAGCAGAA 59.566 40.909 0.00 0.00 41.39 3.02
8422 10035 3.062042 GGGCATGTTTGAAAAGCAGAAG 58.938 45.455 0.00 0.00 41.39 2.85
8423 10036 3.062042 GGCATGTTTGAAAAGCAGAAGG 58.938 45.455 0.00 0.00 41.39 3.46
8424 10037 2.477754 GCATGTTTGAAAAGCAGAAGGC 59.522 45.455 0.00 0.00 41.39 4.35
8455 10068 1.447938 GCAATCGTGTTCAGCAAAACG 59.552 47.619 0.00 0.00 37.38 3.60
8571 10187 2.998316 GCTGTCAGAGCCCTTAAGAT 57.002 50.000 3.32 0.00 42.54 2.40
8573 10189 2.941720 GCTGTCAGAGCCCTTAAGATTG 59.058 50.000 3.32 0.00 42.54 2.67
8574 10190 2.941720 CTGTCAGAGCCCTTAAGATTGC 59.058 50.000 3.36 3.82 0.00 3.56
8575 10191 2.305635 TGTCAGAGCCCTTAAGATTGCA 59.694 45.455 3.36 0.00 0.00 4.08
8576 10192 3.244875 TGTCAGAGCCCTTAAGATTGCAA 60.245 43.478 0.00 0.00 0.00 4.08
8579 10195 1.406898 GAGCCCTTAAGATTGCAAGGC 59.593 52.381 14.06 14.06 40.08 4.35
8580 10196 1.185315 GCCCTTAAGATTGCAAGGCA 58.815 50.000 16.32 0.00 40.08 4.75
8581 10197 1.135721 GCCCTTAAGATTGCAAGGCAG 59.864 52.381 16.32 3.50 40.61 4.85
8582 10198 2.450476 CCCTTAAGATTGCAAGGCAGT 58.550 47.619 4.94 0.00 40.61 4.40
8633 10271 5.923204 ACGGATTTGCTCTAGATGAGAATT 58.077 37.500 0.00 0.00 45.39 2.17
8642 10280 7.001073 TGCTCTAGATGAGAATTAGCTCACTA 58.999 38.462 0.00 0.00 46.72 2.74
8644 10282 8.356657 GCTCTAGATGAGAATTAGCTCACTAAA 58.643 37.037 0.00 0.00 46.72 1.85
8691 10329 3.906720 AGCCCTTAAGATTCGTGCTTA 57.093 42.857 3.36 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.666619 GCTCGCATTTTCCTGAACACTG 60.667 50.000 0.00 0.00 0.00 3.66
1 2 1.537202 GCTCGCATTTTCCTGAACACT 59.463 47.619 0.00 0.00 0.00 3.55
4 5 1.537202 AGTGCTCGCATTTTCCTGAAC 59.463 47.619 0.00 0.00 0.00 3.18
6 7 1.159285 CAGTGCTCGCATTTTCCTGA 58.841 50.000 0.00 0.00 0.00 3.86
7 8 1.159285 TCAGTGCTCGCATTTTCCTG 58.841 50.000 0.00 0.00 0.00 3.86
54 55 3.510388 TGATTAGGAGAACAGCAGACG 57.490 47.619 0.00 0.00 0.00 4.18
55 56 5.275067 AGATGATTAGGAGAACAGCAGAC 57.725 43.478 0.00 0.00 0.00 3.51
56 57 6.183360 GGTTAGATGATTAGGAGAACAGCAGA 60.183 42.308 0.00 0.00 0.00 4.26
58 59 5.451937 CGGTTAGATGATTAGGAGAACAGCA 60.452 44.000 0.00 0.00 0.00 4.41
64 74 7.893124 AACTTACGGTTAGATGATTAGGAGA 57.107 36.000 0.54 0.00 36.23 3.71
77 87 3.552604 ACGCGAACTAACTTACGGTTA 57.447 42.857 15.93 0.00 39.17 2.85
81 91 6.722972 ACATAATACGCGAACTAACTTACG 57.277 37.500 15.93 0.00 0.00 3.18
93 103 9.998381 TTTCGAAATAGAAATACATAATACGCG 57.002 29.630 6.47 3.53 35.44 6.01
127 137 4.430007 TGCTCGTTGGATATGTTCACTAC 58.570 43.478 0.00 0.00 0.00 2.73
130 140 4.437390 CCTTTGCTCGTTGGATATGTTCAC 60.437 45.833 0.00 0.00 0.00 3.18
176 186 2.918712 AGCTAATCTTGGATCGTGGG 57.081 50.000 0.00 0.00 0.00 4.61
178 188 3.243434 ACCGTAGCTAATCTTGGATCGTG 60.243 47.826 0.00 0.00 0.00 4.35
180 190 3.644884 ACCGTAGCTAATCTTGGATCG 57.355 47.619 0.00 0.00 0.00 3.69
181 191 4.444720 CGAAACCGTAGCTAATCTTGGATC 59.555 45.833 0.00 0.00 0.00 3.36
182 192 4.369182 CGAAACCGTAGCTAATCTTGGAT 58.631 43.478 0.00 0.00 0.00 3.41
183 193 3.777478 CGAAACCGTAGCTAATCTTGGA 58.223 45.455 0.00 0.00 0.00 3.53
184 194 2.284417 GCGAAACCGTAGCTAATCTTGG 59.716 50.000 0.00 0.00 0.00 3.61
185 195 3.187700 AGCGAAACCGTAGCTAATCTTG 58.812 45.455 0.00 0.00 39.74 3.02
186 196 3.521947 AGCGAAACCGTAGCTAATCTT 57.478 42.857 0.00 0.00 39.74 2.40
187 197 3.187700 CAAGCGAAACCGTAGCTAATCT 58.812 45.455 0.00 0.00 40.78 2.40
197 207 2.730672 CGAGAGGCAAGCGAAACCG 61.731 63.158 0.00 0.00 0.00 4.44
228 238 3.917760 GGAGATGAGGCGGACCGG 61.918 72.222 17.22 0.00 42.76 5.28
229 239 2.835431 AGGAGATGAGGCGGACCG 60.835 66.667 10.29 10.29 42.76 4.79
230 240 2.060980 ACAGGAGATGAGGCGGACC 61.061 63.158 0.00 0.00 0.00 4.46
247 257 1.974236 CCTCCATGATCCTAGGACCAC 59.026 57.143 15.42 9.45 0.00 4.16
291 301 2.507407 AAAAATAAGCTCTCCCGCCA 57.493 45.000 0.00 0.00 0.00 5.69
353 363 2.431942 TCGCCGCCTCGTCTTTTC 60.432 61.111 0.00 0.00 0.00 2.29
460 471 3.833645 CCACGAGATCCGCCGGAA 61.834 66.667 11.19 0.00 43.32 4.30
587 599 1.154150 GCAGAACAGCAACCATCGC 60.154 57.895 0.00 0.00 0.00 4.58
591 603 2.912986 CGTAGCAGAACAGCAACCA 58.087 52.632 0.00 0.00 36.85 3.67
605 617 0.249911 GTCCCATAAGGCCAGCGTAG 60.250 60.000 5.01 0.00 34.51 3.51
607 619 2.590092 GTCCCATAAGGCCAGCGT 59.410 61.111 5.01 0.00 34.51 5.07
614 626 1.760613 TCGTGCTAAGGTCCCATAAGG 59.239 52.381 0.00 0.00 0.00 2.69
715 727 1.292223 GACTACAAGCACCGGAGCA 59.708 57.895 26.04 3.95 36.85 4.26
734 746 0.182061 TCCGTAGACCACCTAGCGAT 59.818 55.000 0.00 0.00 0.00 4.58
754 766 7.942341 ACACCAGAAGTAAAAATTACATCCAGA 59.058 33.333 3.37 0.00 0.00 3.86
794 807 7.763528 ACTTCAGATCTATTCATCAACTGTCAC 59.236 37.037 0.00 0.00 0.00 3.67
843 856 5.472148 CCTGGTTACATAACACGTTCACTA 58.528 41.667 4.27 0.00 37.92 2.74
851 865 4.096382 CAGAATGGCCTGGTTACATAACAC 59.904 45.833 3.32 0.00 37.92 3.32
882 896 1.461127 CGCCGTCTTCTTCCTTTTCTG 59.539 52.381 0.00 0.00 0.00 3.02
893 907 2.509561 GGCTTCCTCGCCGTCTTC 60.510 66.667 0.00 0.00 40.79 2.87
1078 1094 1.355971 CGCCGATTTTTCGAGAGGAA 58.644 50.000 0.00 0.00 34.64 3.36
1108 1124 1.616628 GGAAGCTCTTGGGAGGGGA 60.617 63.158 0.00 0.00 39.80 4.81
1109 1125 2.684499 GGGAAGCTCTTGGGAGGGG 61.684 68.421 0.00 0.00 39.80 4.79
1110 1126 2.684499 GGGGAAGCTCTTGGGAGGG 61.684 68.421 0.00 0.00 39.80 4.30
1155 1171 1.616374 TGGAGGGTTGGAAAATTTCGC 59.384 47.619 0.00 0.00 0.00 4.70
1401 1419 6.519382 TCACAATACAATCTATCTCAGGCAG 58.481 40.000 0.00 0.00 0.00 4.85
1404 1422 8.175925 TCTCTCACAATACAATCTATCTCAGG 57.824 38.462 0.00 0.00 0.00 3.86
1420 1438 3.714798 ACCAAACCCTAACTCTCTCACAA 59.285 43.478 0.00 0.00 0.00 3.33
1494 1550 0.602638 TGAAGGCGGTTACAGCACAG 60.603 55.000 9.92 0.00 36.08 3.66
1518 1574 1.153549 GCCCTACACTTCTCGCCAG 60.154 63.158 0.00 0.00 0.00 4.85
1531 1587 2.243810 GAAACAACCACCAATGCCCTA 58.756 47.619 0.00 0.00 0.00 3.53
1655 1711 4.382320 GGTGTAGCAACCCCGCGA 62.382 66.667 8.23 0.00 36.85 5.87
1800 1856 7.475565 GCGACTATAATAACAATTGATCTTGCG 59.524 37.037 13.59 4.51 0.00 4.85
1828 1884 5.009631 AGTTATGCAATGCCACTAGAAACA 58.990 37.500 1.53 0.00 0.00 2.83
1845 1908 6.426937 ACAACTACAGCTGGTGTAAAGTTATG 59.573 38.462 21.15 15.69 41.28 1.90
1877 1940 4.131088 GTCTCCGGTGCGACTCCC 62.131 72.222 0.00 0.00 0.00 4.30
2333 2492 3.721087 TTCCCATCCAAGAAAGTCTCC 57.279 47.619 0.00 0.00 0.00 3.71
2448 2607 7.764443 CCTCTCCAAGAATTTCTTAATACGTGA 59.236 37.037 11.21 3.66 33.78 4.35
2686 2847 4.042435 CCCTACCCCTTTCAAAACTAGTGA 59.958 45.833 0.00 0.00 0.00 3.41
2825 2986 7.712639 CACATATTGCTACTAGCCTAATATGGG 59.287 40.741 26.34 23.06 43.98 4.00
2853 3014 3.084786 GGACTGCATTTGCTTCTTACCT 58.915 45.455 3.94 0.00 42.66 3.08
2990 3172 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
3237 3420 2.445845 TCCCGGCACCTATCCTGG 60.446 66.667 0.00 0.00 0.00 4.45
3354 3539 0.179089 AAGAGTATGCAGCGCAGGAG 60.179 55.000 11.47 0.00 43.65 3.69
3378 3563 7.865706 ACTGTCTTCAACAAACTTCTTGTAT 57.134 32.000 0.00 0.00 37.45 2.29
3471 3656 2.946329 TGTCGCAAATAACACACAGGTT 59.054 40.909 0.00 0.00 34.81 3.50
4115 4305 8.170730 AGATTACCATTTTCCAAACTTACTCCT 58.829 33.333 0.00 0.00 0.00 3.69
4353 4543 3.379372 CCAGCATGTGATAAACCAGAAGG 59.621 47.826 0.00 0.00 42.21 3.46
4509 4701 7.873719 TGATTACAGACCAAAGAAAGAAACA 57.126 32.000 0.00 0.00 0.00 2.83
4812 5125 8.618702 ATTTAGTATCATTCAGGAGCAGATTG 57.381 34.615 0.00 0.00 0.00 2.67
5065 5398 7.552458 AATGCATACTTCACAATATTCGACA 57.448 32.000 0.00 0.00 0.00 4.35
5427 6066 8.970293 CATTTTATCGATTGCATGCTTAATGAA 58.030 29.630 20.33 3.55 38.72 2.57
5619 6258 9.061610 CCAAAATGCTGTTTCTTTAGTATAACG 57.938 33.333 0.00 0.00 0.00 3.18
5620 6259 9.908152 ACCAAAATGCTGTTTCTTTAGTATAAC 57.092 29.630 0.00 0.00 0.00 1.89
5979 6653 0.891904 GCAAAGGGAGGCCGTTTACA 60.892 55.000 0.00 0.00 39.21 2.41
5999 6673 4.214119 CACCAGATGAACCTTGTTGTACAG 59.786 45.833 0.00 0.00 0.00 2.74
6102 6776 3.305267 CCAAGCTAGATGAGGACTCGATG 60.305 52.174 0.00 0.00 0.00 3.84
6125 6799 1.558756 AGGGGTTCTTCTGCTCATCAG 59.441 52.381 0.00 0.00 44.21 2.90
6426 7124 4.393680 GCTTCGTCATATCTAGAGTCCGAT 59.606 45.833 0.00 0.00 0.00 4.18
6507 7205 3.507622 CCATTTCTTCTGGACTTGGTTCC 59.492 47.826 0.00 0.00 35.70 3.62
6987 7727 6.424509 TCATTTCCACTTCAATTGACAAATGC 59.575 34.615 7.89 0.00 0.00 3.56
7050 7792 8.421249 AAATCTCAAAACATCTACCAAATCCA 57.579 30.769 0.00 0.00 0.00 3.41
7432 8177 6.855763 AAAGCATCAATCTACCCATGAAAA 57.144 33.333 0.00 0.00 0.00 2.29
7645 8390 3.439129 CGTCCTTTTCATGTAAAGACCCC 59.561 47.826 22.24 8.77 37.31 4.95
7712 8458 7.232534 ACAGGAAGCCATATTTGAGTAAAACAA 59.767 33.333 0.00 0.00 0.00 2.83
7780 8526 3.261643 GGCAGACCTTTTTGATCCCATTT 59.738 43.478 0.00 0.00 0.00 2.32
7833 8581 3.423749 TGACCACCGTCTGTATGACTAA 58.576 45.455 0.00 0.00 43.25 2.24
8042 8820 9.534565 AGTGCTCTAACTTATTACATGTACATG 57.465 33.333 29.97 29.97 44.15 3.21
8043 8821 9.751542 GAGTGCTCTAACTTATTACATGTACAT 57.248 33.333 4.68 1.41 0.00 2.29
8044 8822 8.967918 AGAGTGCTCTAACTTATTACATGTACA 58.032 33.333 4.68 0.00 38.35 2.90
8045 8823 9.804758 AAGAGTGCTCTAACTTATTACATGTAC 57.195 33.333 4.68 0.00 39.39 2.90
8047 8825 9.155975 CAAAGAGTGCTCTAACTTATTACATGT 57.844 33.333 2.69 2.69 39.39 3.21
8130 8946 4.379243 CCGGCTCAGCAAGACCGT 62.379 66.667 0.00 0.00 40.73 4.83
8257 9868 3.951979 ATATGCTGCTAACGTTGCTTC 57.048 42.857 11.99 8.87 0.00 3.86
8272 9883 7.543520 AGCAGTGCTCTTTCTTTAAAAATATGC 59.456 33.333 13.14 0.00 30.62 3.14
8339 9952 3.181455 GCCCATGGATGGTGCGATATATA 60.181 47.826 15.22 0.00 46.65 0.86
8340 9953 2.421952 GCCCATGGATGGTGCGATATAT 60.422 50.000 15.22 0.00 46.65 0.86
8360 9973 1.664016 CCTGTCGTGCTTCAAACATGC 60.664 52.381 0.00 0.00 0.00 4.06
8368 9981 4.099120 CGATATATAGCCTGTCGTGCTTC 58.901 47.826 0.00 0.00 40.23 3.86
8371 9984 2.186076 GCGATATATAGCCTGTCGTGC 58.814 52.381 6.56 0.00 34.97 5.34
8372 9985 3.172050 GTGCGATATATAGCCTGTCGTG 58.828 50.000 14.32 0.00 34.97 4.35
8373 9986 2.163815 GGTGCGATATATAGCCTGTCGT 59.836 50.000 14.32 0.00 34.97 4.34
8375 9988 3.868757 TGGTGCGATATATAGCCTGTC 57.131 47.619 14.32 3.89 0.00 3.51
8376 9989 3.133003 GGATGGTGCGATATATAGCCTGT 59.867 47.826 14.32 0.00 0.00 4.00
8377 9990 3.132824 TGGATGGTGCGATATATAGCCTG 59.867 47.826 14.32 0.00 0.00 4.85
8382 9995 3.181455 GCCCATGGATGGTGCGATATATA 60.181 47.826 15.22 0.00 46.65 0.86
8383 9996 2.421952 GCCCATGGATGGTGCGATATAT 60.422 50.000 15.22 0.00 46.65 0.86
8384 9997 1.065491 GCCCATGGATGGTGCGATATA 60.065 52.381 15.22 0.00 46.65 0.86
8385 9998 0.322816 GCCCATGGATGGTGCGATAT 60.323 55.000 15.22 0.00 46.65 1.63
8386 9999 1.073025 GCCCATGGATGGTGCGATA 59.927 57.895 15.22 0.00 46.65 2.92
8387 10000 2.203394 GCCCATGGATGGTGCGAT 60.203 61.111 15.22 0.00 46.65 4.58
8388 10001 3.059326 ATGCCCATGGATGGTGCGA 62.059 57.895 15.22 0.00 46.65 5.10
8389 10002 2.520020 ATGCCCATGGATGGTGCG 60.520 61.111 15.22 0.00 46.65 5.34
8390 10003 1.332144 AACATGCCCATGGATGGTGC 61.332 55.000 15.22 8.28 46.65 5.01
8391 10004 1.134640 CAAACATGCCCATGGATGGTG 60.135 52.381 15.22 8.86 46.65 4.17
8392 10005 1.196911 CAAACATGCCCATGGATGGT 58.803 50.000 15.22 5.61 46.65 3.55
8394 10007 3.613494 TTTCAAACATGCCCATGGATG 57.387 42.857 15.22 12.70 42.91 3.51
8395 10008 3.620472 GCTTTTCAAACATGCCCATGGAT 60.620 43.478 15.22 0.00 42.91 3.41
8396 10009 2.289569 GCTTTTCAAACATGCCCATGGA 60.290 45.455 15.22 0.00 42.91 3.41
8397 10010 2.078392 GCTTTTCAAACATGCCCATGG 58.922 47.619 4.14 4.14 42.91 3.66
8398 10011 2.739913 CTGCTTTTCAAACATGCCCATG 59.260 45.455 6.71 6.71 44.15 3.66
8399 10012 2.633967 TCTGCTTTTCAAACATGCCCAT 59.366 40.909 0.00 0.00 0.00 4.00
8400 10013 2.037901 TCTGCTTTTCAAACATGCCCA 58.962 42.857 0.00 0.00 0.00 5.36
8401 10014 2.818130 TCTGCTTTTCAAACATGCCC 57.182 45.000 0.00 0.00 0.00 5.36
8402 10015 3.062042 CCTTCTGCTTTTCAAACATGCC 58.938 45.455 0.00 0.00 0.00 4.40
8403 10016 2.477754 GCCTTCTGCTTTTCAAACATGC 59.522 45.455 0.00 0.00 36.87 4.06
8404 10017 2.727798 CGCCTTCTGCTTTTCAAACATG 59.272 45.455 0.00 0.00 38.05 3.21
8405 10018 2.288395 CCGCCTTCTGCTTTTCAAACAT 60.288 45.455 0.00 0.00 38.05 2.71
8406 10019 1.066908 CCGCCTTCTGCTTTTCAAACA 59.933 47.619 0.00 0.00 38.05 2.83
8407 10020 1.067060 ACCGCCTTCTGCTTTTCAAAC 59.933 47.619 0.00 0.00 38.05 2.93
8408 10021 1.398692 ACCGCCTTCTGCTTTTCAAA 58.601 45.000 0.00 0.00 38.05 2.69
8409 10022 1.066908 CAACCGCCTTCTGCTTTTCAA 59.933 47.619 0.00 0.00 38.05 2.69
8410 10023 0.667993 CAACCGCCTTCTGCTTTTCA 59.332 50.000 0.00 0.00 38.05 2.69
8411 10024 0.039165 CCAACCGCCTTCTGCTTTTC 60.039 55.000 0.00 0.00 38.05 2.29
8412 10025 0.467290 TCCAACCGCCTTCTGCTTTT 60.467 50.000 0.00 0.00 38.05 2.27
8413 10026 0.251341 ATCCAACCGCCTTCTGCTTT 60.251 50.000 0.00 0.00 38.05 3.51
8414 10027 0.251341 AATCCAACCGCCTTCTGCTT 60.251 50.000 0.00 0.00 38.05 3.91
8415 10028 0.618458 TAATCCAACCGCCTTCTGCT 59.382 50.000 0.00 0.00 38.05 4.24
8416 10029 1.017387 CTAATCCAACCGCCTTCTGC 58.983 55.000 0.00 0.00 0.00 4.26
8417 10030 1.017387 GCTAATCCAACCGCCTTCTG 58.983 55.000 0.00 0.00 0.00 3.02
8418 10031 0.618458 TGCTAATCCAACCGCCTTCT 59.382 50.000 0.00 0.00 0.00 2.85
8419 10032 1.459450 TTGCTAATCCAACCGCCTTC 58.541 50.000 0.00 0.00 0.00 3.46
8420 10033 2.024414 GATTGCTAATCCAACCGCCTT 58.976 47.619 0.00 0.00 31.60 4.35
8421 10034 1.680338 GATTGCTAATCCAACCGCCT 58.320 50.000 0.00 0.00 31.60 5.52
8422 10035 0.307760 CGATTGCTAATCCAACCGCC 59.692 55.000 0.00 0.00 34.35 6.13
8423 10036 1.014352 ACGATTGCTAATCCAACCGC 58.986 50.000 0.00 0.00 35.13 5.68
8424 10037 2.006888 ACACGATTGCTAATCCAACCG 58.993 47.619 0.00 0.00 37.72 4.44
8455 10068 2.095161 AGATCGTCTCTTCACGGACAAC 60.095 50.000 0.00 0.00 40.35 3.32
8563 10179 2.416431 GCACTGCCTTGCAATCTTAAGG 60.416 50.000 0.00 0.00 44.97 2.69
8585 10223 7.944729 ATCCTAACTTTGTTGCAATCAGTAT 57.055 32.000 0.59 0.19 0.00 2.12
8602 10240 6.328641 TCTAGAGCAAATCCGTATCCTAAC 57.671 41.667 0.00 0.00 0.00 2.34
8633 10271 6.042322 TGGTAAACTTGGACTTTAGTGAGCTA 59.958 38.462 0.00 0.00 0.00 3.32
8642 10280 3.286329 ACGGTGGTAAACTTGGACTTT 57.714 42.857 0.00 0.00 0.00 2.66
8644 10282 2.171027 TCAACGGTGGTAAACTTGGACT 59.829 45.455 0.00 0.00 0.00 3.85
8691 10329 6.200286 CGCACCGTACACTGATAAGAAAATAT 59.800 38.462 0.00 0.00 0.00 1.28
8703 10341 0.042535 CAACAACGCACCGTACACTG 60.043 55.000 0.00 0.00 39.99 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.