Multiple sequence alignment - TraesCS2D01G313700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G313700 chr2D 100.000 3253 0 0 1 3253 403467881 403471133 0.000000e+00 6008.0
1 TraesCS2D01G313700 chr2D 100.000 32 0 0 2458 2489 542330500 542330531 3.510000e-05 60.2
2 TraesCS2D01G313700 chr2A 92.102 1570 76 21 881 2418 541200371 541201924 0.000000e+00 2169.0
3 TraesCS2D01G313700 chr2A 90.307 1434 84 34 902 2291 541391331 541392753 0.000000e+00 1827.0
4 TraesCS2D01G313700 chr2A 94.066 573 30 2 1 570 541198240 541198811 0.000000e+00 867.0
5 TraesCS2D01G313700 chr2A 89.474 589 40 5 3 570 541388381 541388968 0.000000e+00 725.0
6 TraesCS2D01G313700 chr2A 92.208 154 11 1 2528 2681 541201961 541202113 1.970000e-52 217.0
7 TraesCS2D01G313700 chr2A 93.805 113 7 0 786 898 541200243 541200355 1.550000e-38 171.0
8 TraesCS2D01G313700 chr2A 91.892 111 8 1 795 905 541389358 541389467 1.560000e-33 154.0
9 TraesCS2D01G313700 chr2A 92.424 66 5 0 2767 2832 541393921 541393986 9.610000e-16 95.3
10 TraesCS2D01G313700 chr2A 84.783 92 14 0 2816 2907 541393988 541394079 3.460000e-15 93.5
11 TraesCS2D01G313700 chr2B 89.745 1531 91 34 984 2463 477568456 477569971 0.000000e+00 1897.0
12 TraesCS2D01G313700 chr2B 92.903 775 38 7 1 762 477567334 477568104 0.000000e+00 1110.0
13 TraesCS2D01G313700 chr2B 84.657 919 104 22 1397 2290 744185939 744186845 0.000000e+00 881.0
14 TraesCS2D01G313700 chr2B 91.906 383 29 1 2525 2905 477569985 477570367 4.780000e-148 534.0
15 TraesCS2D01G313700 chr2B 91.507 365 24 4 968 1327 744185404 744185766 2.250000e-136 496.0
16 TraesCS2D01G313700 chr2B 95.135 185 9 0 763 947 477568184 477568368 3.170000e-75 292.0
17 TraesCS2D01G313700 chr3A 91.636 275 21 2 2981 3253 745549279 745549553 2.370000e-101 379.0
18 TraesCS2D01G313700 chr1D 91.606 274 21 2 2981 3252 366007084 366007357 8.520000e-101 377.0
19 TraesCS2D01G313700 chr1D 91.575 273 20 2 2981 3252 375943890 375943620 1.100000e-99 374.0
20 TraesCS2D01G313700 chr1D 84.249 273 39 3 2982 3253 453184058 453184327 2.490000e-66 263.0
21 TraesCS2D01G313700 chr1D 100.000 34 0 0 2489 2522 6539821 6539854 2.710000e-06 63.9
22 TraesCS2D01G313700 chr1D 88.235 51 4 2 2472 2522 415209066 415209114 3.510000e-05 60.2
23 TraesCS2D01G313700 chr3B 91.606 274 20 1 2982 3252 168275773 168276046 3.060000e-100 375.0
24 TraesCS2D01G313700 chr4D 91.481 270 23 0 2981 3250 446649457 446649188 3.960000e-99 372.0
25 TraesCS2D01G313700 chr7D 90.909 275 23 1 2981 3253 84416379 84416105 5.130000e-98 368.0
26 TraesCS2D01G313700 chr7D 90.146 274 24 3 2981 3252 41992396 41992124 1.440000e-93 353.0
27 TraesCS2D01G313700 chr7D 100.000 28 0 0 2461 2488 98035195 98035168 6.000000e-03 52.8
28 TraesCS2D01G313700 chr1B 90.545 275 23 3 2981 3253 501359365 501359092 8.580000e-96 361.0
29 TraesCS2D01G313700 chr6B 90.441 272 23 3 2981 3251 37667058 37666789 3.990000e-94 355.0
30 TraesCS2D01G313700 chr1A 93.333 45 1 2 2479 2522 256822997 256823040 7.530000e-07 65.8
31 TraesCS2D01G313700 chr1A 97.143 35 1 0 2427 2461 49154193 49154159 3.510000e-05 60.2
32 TraesCS2D01G313700 chr6D 100.000 34 0 0 2489 2522 249994825 249994858 2.710000e-06 63.9
33 TraesCS2D01G313700 chr5D 100.000 34 0 0 2489 2522 234857544 234857577 2.710000e-06 63.9
34 TraesCS2D01G313700 chr5D 100.000 34 0 0 2489 2522 482889127 482889160 2.710000e-06 63.9
35 TraesCS2D01G313700 chr5A 100.000 34 0 0 2489 2522 370098056 370098089 2.710000e-06 63.9
36 TraesCS2D01G313700 chr4B 100.000 34 0 0 2489 2522 497553455 497553488 2.710000e-06 63.9
37 TraesCS2D01G313700 chr4B 100.000 34 0 0 2489 2522 647731202 647731235 2.710000e-06 63.9
38 TraesCS2D01G313700 chr4B 100.000 28 0 0 2459 2486 667600055 667600028 6.000000e-03 52.8
39 TraesCS2D01G313700 chr5B 100.000 29 0 0 2460 2488 319908986 319908958 2.000000e-03 54.7
40 TraesCS2D01G313700 chr5B 100.000 28 0 0 2462 2489 668533693 668533720 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G313700 chr2D 403467881 403471133 3252 False 6008.00 6008 100.00000 1 3253 1 chr2D.!!$F1 3252
1 TraesCS2D01G313700 chr2A 541198240 541202113 3873 False 856.00 2169 93.04525 1 2681 4 chr2A.!!$F1 2680
2 TraesCS2D01G313700 chr2A 541388381 541394079 5698 False 578.96 1827 89.77600 3 2907 5 chr2A.!!$F2 2904
3 TraesCS2D01G313700 chr2B 477567334 477570367 3033 False 958.25 1897 92.42225 1 2905 4 chr2B.!!$F1 2904
4 TraesCS2D01G313700 chr2B 744185404 744186845 1441 False 688.50 881 88.08200 968 2290 2 chr2B.!!$F2 1322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 780 0.179169 GTCTTGGCTACGAGACGGAC 60.179 60.0 0.0 0.0 45.54 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 5974 0.040067 CTTCGGTTGCAGCACTTTCC 60.04 55.0 2.05 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 208 0.252881 ATCCTCTGCCCTGAAGGTGA 60.253 55.000 0.00 0.00 38.26 4.02
212 213 0.909610 CTGCCCTGAAGGTGACCCTA 60.910 60.000 0.00 0.00 41.56 3.53
364 382 2.093816 TGAGATGCTTCTGGTGCTACTG 60.094 50.000 6.88 0.00 30.30 2.74
365 383 1.012841 GATGCTTCTGGTGCTACTGC 58.987 55.000 0.00 0.00 40.20 4.40
377 395 2.434702 GTGCTACTGCCCTGTAACCTAT 59.565 50.000 0.00 0.00 38.71 2.57
441 466 1.541310 CGGGTTCCCTACAGTGCTGA 61.541 60.000 6.17 0.00 0.00 4.26
451 476 0.911525 ACAGTGCTGATGGGTAGCCT 60.912 55.000 13.11 0.00 40.42 4.58
456 481 0.817229 GCTGATGGGTAGCCTTCAGC 60.817 60.000 41.94 41.94 44.92 4.26
464 489 0.737715 GTAGCCTTCAGCCGTCACTG 60.738 60.000 0.00 0.00 45.47 3.66
470 495 1.269723 CTTCAGCCGTCACTGACAGTA 59.730 52.381 8.02 0.00 46.13 2.74
483 508 4.393062 CACTGACAGTATCACAAATGGACC 59.607 45.833 8.02 0.00 32.37 4.46
520 545 1.363744 CACTTCGGTTGGCTGATCTC 58.636 55.000 0.00 0.00 0.00 2.75
570 628 7.465116 TCTTCTCTCCAGGAAAAATGAAAGAT 58.535 34.615 0.00 0.00 0.00 2.40
573 631 8.567285 TCTCTCCAGGAAAAATGAAAGATTAC 57.433 34.615 0.00 0.00 0.00 1.89
576 637 9.142014 TCTCCAGGAAAAATGAAAGATTACAAA 57.858 29.630 0.00 0.00 0.00 2.83
581 642 9.558396 AGGAAAAATGAAAGATTACAAATTGCA 57.442 25.926 0.00 0.00 0.00 4.08
602 663 5.163893 TGCACCTAGAAAATCGACGAAATTC 60.164 40.000 14.65 14.65 0.00 2.17
604 665 6.470160 CACCTAGAAAATCGACGAAATTCTG 58.530 40.000 26.19 17.88 32.87 3.02
620 681 0.532573 TCTGTCAAGCTCGGATGGAC 59.467 55.000 0.00 0.00 0.00 4.02
649 710 1.871080 CTCTTGCTTGTTCGACAGGT 58.129 50.000 0.00 0.00 0.00 4.00
719 780 0.179169 GTCTTGGCTACGAGACGGAC 60.179 60.000 0.00 0.00 45.54 4.79
742 810 2.673523 GCAGACATGTGGGCCTCT 59.326 61.111 1.15 0.00 0.00 3.69
787 2050 1.271934 TGCATGCATTGTGGTGGTTAC 59.728 47.619 18.46 0.00 0.00 2.50
830 2099 4.523943 CACAAGGATCCTGTTTCATTCCAA 59.476 41.667 17.02 0.00 0.00 3.53
982 4202 4.274214 CACAAGACAAGACAAGCTCAATCA 59.726 41.667 0.00 0.00 0.00 2.57
996 4216 1.203287 TCAATCACTCTGCAGAGACGG 59.797 52.381 42.76 30.62 44.74 4.79
1366 4590 2.737252 GAGTAGACTTTTGCCCGTTGAG 59.263 50.000 0.00 0.00 0.00 3.02
1458 4818 0.398522 ACCTGATCCACTGGCCGATA 60.399 55.000 0.00 0.00 40.59 2.92
1523 4883 3.170585 CGTCCCGTTCGACTTCGC 61.171 66.667 0.00 0.00 39.60 4.70
1665 5025 1.098712 TCAACCAGGTTGCCGAACAC 61.099 55.000 25.70 0.00 42.55 3.32
1668 5029 1.358759 CCAGGTTGCCGAACACAAC 59.641 57.895 0.00 0.00 45.30 3.32
1679 5044 2.915463 CCGAACACAACACTACGAGATC 59.085 50.000 0.00 0.00 0.00 2.75
1682 5052 3.299340 ACACAACACTACGAGATCACC 57.701 47.619 0.00 0.00 0.00 4.02
1914 5312 1.939980 AGGCTAGAGGAAAGACCGTT 58.060 50.000 0.00 0.00 44.74 4.44
1959 5369 0.534203 TCACGTTTCTCCTGGCAACC 60.534 55.000 0.00 0.00 0.00 3.77
1996 5416 2.334838 GTCCGTATGACACCAACTGAC 58.665 52.381 0.00 0.00 43.85 3.51
1999 5419 2.029380 CCGTATGACACCAACTGACTCA 60.029 50.000 0.00 0.00 0.00 3.41
2036 5458 1.556911 CAGGTAGCACTGAGGTGGATT 59.443 52.381 0.00 0.00 43.18 3.01
2050 5472 0.393808 TGGATTTACGAGCAAGGGGC 60.394 55.000 0.00 0.00 45.30 5.80
2253 5675 6.712547 GGAGATGGAAATTGTCGAGGAATAAT 59.287 38.462 0.00 0.00 0.00 1.28
2305 5748 3.057019 TGACGTAAACTGCAGTAGCTTG 58.943 45.455 22.01 11.78 42.74 4.01
2344 5787 4.631377 TGAATAAAGAAGTGATCCGTGCTG 59.369 41.667 0.00 0.00 0.00 4.41
2408 5863 0.676466 TGTGATCACCGTTGCCATCC 60.676 55.000 22.85 0.00 0.00 3.51
2466 5921 7.446001 ACGGCTTATATTAGTGTACTACTCC 57.554 40.000 0.00 0.00 40.89 3.85
2467 5922 6.432472 ACGGCTTATATTAGTGTACTACTCCC 59.568 42.308 0.00 0.00 40.89 4.30
2468 5923 6.658391 CGGCTTATATTAGTGTACTACTCCCT 59.342 42.308 0.00 0.00 40.89 4.20
2469 5924 7.148272 CGGCTTATATTAGTGTACTACTCCCTC 60.148 44.444 0.00 0.00 40.89 4.30
2477 5932 5.091552 AGTGTACTACTCCCTCCATTTCAA 58.908 41.667 0.00 0.00 33.17 2.69
2478 5933 5.546499 AGTGTACTACTCCCTCCATTTCAAA 59.454 40.000 0.00 0.00 33.17 2.69
2480 5935 6.884836 GTGTACTACTCCCTCCATTTCAAAAT 59.115 38.462 0.00 0.00 0.00 1.82
2481 5936 8.044908 GTGTACTACTCCCTCCATTTCAAAATA 58.955 37.037 0.00 0.00 0.00 1.40
2482 5937 8.607713 TGTACTACTCCCTCCATTTCAAAATAA 58.392 33.333 0.00 0.00 0.00 1.40
2487 5942 7.840931 ACTCCCTCCATTTCAAAATAAATGAC 58.159 34.615 10.15 0.00 45.61 3.06
2489 5944 9.189156 CTCCCTCCATTTCAAAATAAATGACTA 57.811 33.333 10.15 0.00 45.61 2.59
2490 5945 9.189156 TCCCTCCATTTCAAAATAAATGACTAG 57.811 33.333 10.15 0.00 45.61 2.57
2491 5946 8.971073 CCCTCCATTTCAAAATAAATGACTAGT 58.029 33.333 10.15 0.00 45.61 2.57
2507 5962 8.723942 AATGACTAGTACAAAGTTGGATCATC 57.276 34.615 0.00 0.00 0.00 2.92
2508 5963 7.482169 TGACTAGTACAAAGTTGGATCATCT 57.518 36.000 0.00 0.00 0.00 2.90
2509 5964 8.589701 TGACTAGTACAAAGTTGGATCATCTA 57.410 34.615 0.00 0.00 0.00 1.98
2510 5965 9.201989 TGACTAGTACAAAGTTGGATCATCTAT 57.798 33.333 0.00 0.00 0.00 1.98
2515 5970 9.739276 AGTACAAAGTTGGATCATCTATTTTGA 57.261 29.630 12.56 0.00 0.00 2.69
2518 5973 9.696917 ACAAAGTTGGATCATCTATTTTGAAAC 57.303 29.630 12.56 0.00 0.00 2.78
2519 5974 8.853345 CAAAGTTGGATCATCTATTTTGAAACG 58.147 33.333 0.00 0.00 0.00 3.60
2520 5975 7.088589 AGTTGGATCATCTATTTTGAAACGG 57.911 36.000 0.00 0.00 0.00 4.44
2521 5976 6.884295 AGTTGGATCATCTATTTTGAAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
2522 5977 7.393234 AGTTGGATCATCTATTTTGAAACGGAA 59.607 33.333 0.00 0.00 0.00 4.30
2523 5978 7.695480 TGGATCATCTATTTTGAAACGGAAA 57.305 32.000 0.00 0.00 0.00 3.13
2553 6008 1.355796 CGAAGTTCCATACGGCGCAA 61.356 55.000 10.83 0.00 0.00 4.85
2579 6034 7.166167 GGTTTTCCTCTAGATGGTCAGTAAAA 58.834 38.462 0.00 0.00 36.94 1.52
2617 6072 0.327924 TTCATTGCCCATCGACACCT 59.672 50.000 0.00 0.00 0.00 4.00
2634 6089 1.217882 CCTGTCGAACGTTGCTTTCT 58.782 50.000 5.00 0.00 0.00 2.52
2709 6164 4.142249 CGTCATGTACCCACTAATCTCACA 60.142 45.833 0.00 0.00 0.00 3.58
2738 6193 4.701171 ACCGGATCTATTCTAGTCGAATCC 59.299 45.833 9.46 0.00 41.36 3.01
2781 6982 2.293955 CCCGTCAAACCCGTTGTATTTT 59.706 45.455 0.00 0.00 38.47 1.82
2797 6998 5.623335 TGTATTTTGACTTGGCGAATTACG 58.377 37.500 0.00 0.00 45.66 3.18
2867 7088 2.496899 AGGTTCAATCACAGCCGATT 57.503 45.000 0.00 0.00 36.00 3.34
2881 7102 4.196193 CAGCCGATTGGTTACAGGATTAA 58.804 43.478 0.00 0.00 37.67 1.40
2907 7128 9.750783 AGTGACTCTTACACTTAACCTATTAGA 57.249 33.333 0.00 0.00 44.69 2.10
2909 7130 8.684520 TGACTCTTACACTTAACCTATTAGAGC 58.315 37.037 0.00 0.00 32.00 4.09
2910 7131 8.591114 ACTCTTACACTTAACCTATTAGAGCA 57.409 34.615 0.00 0.00 32.00 4.26
2911 7132 8.468399 ACTCTTACACTTAACCTATTAGAGCAC 58.532 37.037 0.00 0.00 32.00 4.40
2912 7133 7.779073 TCTTACACTTAACCTATTAGAGCACC 58.221 38.462 0.00 0.00 0.00 5.01
2913 7134 7.618512 TCTTACACTTAACCTATTAGAGCACCT 59.381 37.037 0.00 0.00 0.00 4.00
2914 7135 8.827832 TTACACTTAACCTATTAGAGCACCTA 57.172 34.615 0.00 0.00 0.00 3.08
2915 7136 7.916077 ACACTTAACCTATTAGAGCACCTAT 57.084 36.000 0.00 0.00 0.00 2.57
2917 7138 9.080097 ACACTTAACCTATTAGAGCACCTATAG 57.920 37.037 0.00 0.00 0.00 1.31
2918 7139 8.030106 CACTTAACCTATTAGAGCACCTATAGC 58.970 40.741 0.00 0.00 0.00 2.97
2919 7140 7.178805 ACTTAACCTATTAGAGCACCTATAGCC 59.821 40.741 0.00 0.00 0.00 3.93
2920 7141 4.017808 ACCTATTAGAGCACCTATAGCCG 58.982 47.826 0.00 0.00 0.00 5.52
2921 7142 3.381908 CCTATTAGAGCACCTATAGCCGG 59.618 52.174 0.00 0.00 0.00 6.13
2922 7143 2.670019 TTAGAGCACCTATAGCCGGA 57.330 50.000 5.05 0.00 0.00 5.14
2923 7144 1.906990 TAGAGCACCTATAGCCGGAC 58.093 55.000 5.05 0.00 0.00 4.79
2924 7145 0.186386 AGAGCACCTATAGCCGGACT 59.814 55.000 5.05 4.30 0.00 3.85
2925 7146 1.041437 GAGCACCTATAGCCGGACTT 58.959 55.000 5.05 0.00 0.00 3.01
2926 7147 0.753262 AGCACCTATAGCCGGACTTG 59.247 55.000 5.05 0.00 0.00 3.16
2927 7148 0.880718 GCACCTATAGCCGGACTTGC 60.881 60.000 5.05 4.68 0.00 4.01
2928 7149 0.464036 CACCTATAGCCGGACTTGCA 59.536 55.000 5.05 0.00 0.00 4.08
2929 7150 1.134521 CACCTATAGCCGGACTTGCAA 60.135 52.381 5.05 0.00 0.00 4.08
2930 7151 1.557832 ACCTATAGCCGGACTTGCAAA 59.442 47.619 5.05 0.00 0.00 3.68
2931 7152 2.172717 ACCTATAGCCGGACTTGCAAAT 59.827 45.455 5.05 0.00 0.00 2.32
2932 7153 3.214328 CCTATAGCCGGACTTGCAAATT 58.786 45.455 5.05 0.00 0.00 1.82
2933 7154 3.251004 CCTATAGCCGGACTTGCAAATTC 59.749 47.826 5.05 0.00 0.00 2.17
2934 7155 1.083489 TAGCCGGACTTGCAAATTCG 58.917 50.000 5.05 0.53 0.00 3.34
2935 7156 1.154035 GCCGGACTTGCAAATTCGG 60.154 57.895 23.10 23.10 36.23 4.30
2936 7157 1.154035 CCGGACTTGCAAATTCGGC 60.154 57.895 15.66 0.00 0.00 5.54
2937 7158 1.154035 CGGACTTGCAAATTCGGCC 60.154 57.895 0.00 0.00 0.00 6.13
2938 7159 1.215382 GGACTTGCAAATTCGGCCC 59.785 57.895 0.00 0.00 0.00 5.80
2939 7160 1.215382 GACTTGCAAATTCGGCCCC 59.785 57.895 0.00 0.00 0.00 5.80
2940 7161 1.228862 ACTTGCAAATTCGGCCCCT 60.229 52.632 0.00 0.00 0.00 4.79
2941 7162 1.250840 ACTTGCAAATTCGGCCCCTC 61.251 55.000 0.00 0.00 0.00 4.30
2942 7163 1.228706 TTGCAAATTCGGCCCCTCA 60.229 52.632 0.00 0.00 0.00 3.86
2943 7164 0.829602 TTGCAAATTCGGCCCCTCAA 60.830 50.000 0.00 0.00 0.00 3.02
2944 7165 0.829602 TGCAAATTCGGCCCCTCAAA 60.830 50.000 0.00 0.00 0.00 2.69
2945 7166 0.536724 GCAAATTCGGCCCCTCAAAT 59.463 50.000 0.00 0.00 0.00 2.32
2946 7167 1.471501 GCAAATTCGGCCCCTCAAATC 60.472 52.381 0.00 0.00 0.00 2.17
2947 7168 1.136891 CAAATTCGGCCCCTCAAATCC 59.863 52.381 0.00 0.00 0.00 3.01
2948 7169 0.631212 AATTCGGCCCCTCAAATCCT 59.369 50.000 0.00 0.00 0.00 3.24
2949 7170 0.183731 ATTCGGCCCCTCAAATCCTC 59.816 55.000 0.00 0.00 0.00 3.71
2950 7171 2.203070 CGGCCCCTCAAATCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
2951 7172 2.193248 GGCCCCTCAAATCCTCGG 59.807 66.667 0.00 0.00 0.00 4.63
2952 7173 2.375345 GGCCCCTCAAATCCTCGGA 61.375 63.158 0.00 0.00 0.00 4.55
2953 7174 1.153147 GCCCCTCAAATCCTCGGAC 60.153 63.158 0.00 0.00 0.00 4.79
2954 7175 1.144057 CCCCTCAAATCCTCGGACG 59.856 63.158 0.00 0.00 0.00 4.79
2955 7176 1.521681 CCCTCAAATCCTCGGACGC 60.522 63.158 0.00 0.00 0.00 5.19
2956 7177 1.878522 CCTCAAATCCTCGGACGCG 60.879 63.158 3.53 3.53 0.00 6.01
2957 7178 2.508439 TCAAATCCTCGGACGCGC 60.508 61.111 5.73 0.00 0.00 6.86
2958 7179 3.564027 CAAATCCTCGGACGCGCC 61.564 66.667 5.73 7.90 0.00 6.53
2959 7180 4.832608 AAATCCTCGGACGCGCCC 62.833 66.667 5.73 2.39 0.00 6.13
2980 7201 4.758251 CATGTCCGCGGGCACTGA 62.758 66.667 38.14 13.50 36.31 3.41
2981 7202 3.785859 ATGTCCGCGGGCACTGAT 61.786 61.111 38.14 17.74 36.31 2.90
2982 7203 3.329542 ATGTCCGCGGGCACTGATT 62.330 57.895 38.14 17.26 36.31 2.57
2983 7204 3.195698 GTCCGCGGGCACTGATTC 61.196 66.667 27.96 0.86 36.31 2.52
2984 7205 3.390521 TCCGCGGGCACTGATTCT 61.391 61.111 27.83 0.00 36.31 2.40
2985 7206 3.197790 CCGCGGGCACTGATTCTG 61.198 66.667 20.10 0.00 36.31 3.02
2986 7207 3.869272 CGCGGGCACTGATTCTGC 61.869 66.667 0.00 0.00 36.31 4.26
2987 7208 2.747460 GCGGGCACTGATTCTGCA 60.747 61.111 0.98 0.00 36.31 4.41
2988 7209 2.117156 GCGGGCACTGATTCTGCAT 61.117 57.895 0.00 0.00 36.31 3.96
2989 7210 2.020131 CGGGCACTGATTCTGCATC 58.980 57.895 0.00 0.00 36.31 3.91
2990 7211 1.442526 CGGGCACTGATTCTGCATCC 61.443 60.000 0.00 0.00 36.31 3.51
2991 7212 1.442526 GGGCACTGATTCTGCATCCG 61.443 60.000 0.00 0.00 36.27 4.18
2992 7213 1.354506 GCACTGATTCTGCATCCGC 59.645 57.895 0.00 0.00 34.56 5.54
3004 7225 3.701205 TGCATCCGCATACCTCATATT 57.299 42.857 0.00 0.00 45.36 1.28
3005 7226 3.599343 TGCATCCGCATACCTCATATTC 58.401 45.455 0.00 0.00 45.36 1.75
3006 7227 2.604914 GCATCCGCATACCTCATATTCG 59.395 50.000 0.00 0.00 38.36 3.34
3008 7229 1.067142 TCCGCATACCTCATATTCGGC 60.067 52.381 0.84 0.00 46.24 5.54
3009 7230 1.337728 CCGCATACCTCATATTCGGCA 60.338 52.381 0.00 0.00 42.06 5.69
3010 7231 1.726791 CGCATACCTCATATTCGGCAC 59.273 52.381 0.00 0.00 0.00 5.01
3011 7232 2.076863 GCATACCTCATATTCGGCACC 58.923 52.381 0.00 0.00 0.00 5.01
3012 7233 2.289694 GCATACCTCATATTCGGCACCT 60.290 50.000 0.00 0.00 0.00 4.00
3013 7234 3.807209 GCATACCTCATATTCGGCACCTT 60.807 47.826 0.00 0.00 0.00 3.50
3014 7235 4.562757 GCATACCTCATATTCGGCACCTTA 60.563 45.833 0.00 0.00 0.00 2.69
3015 7236 5.734720 CATACCTCATATTCGGCACCTTAT 58.265 41.667 0.00 0.00 0.00 1.73
3016 7237 6.629515 GCATACCTCATATTCGGCACCTTATA 60.630 42.308 0.00 0.00 0.00 0.98
3017 7238 7.500992 CATACCTCATATTCGGCACCTTATAT 58.499 38.462 0.00 0.00 0.00 0.86
3018 7239 5.978814 ACCTCATATTCGGCACCTTATATC 58.021 41.667 0.00 0.00 0.00 1.63
3019 7240 5.104900 ACCTCATATTCGGCACCTTATATCC 60.105 44.000 0.00 0.00 0.00 2.59
3020 7241 5.104941 CCTCATATTCGGCACCTTATATCCA 60.105 44.000 0.00 0.00 0.00 3.41
3021 7242 6.408548 CCTCATATTCGGCACCTTATATCCAT 60.409 42.308 0.00 0.00 0.00 3.41
3022 7243 7.202001 CCTCATATTCGGCACCTTATATCCATA 60.202 40.741 0.00 0.00 0.00 2.74
3023 7244 7.497595 TCATATTCGGCACCTTATATCCATAC 58.502 38.462 0.00 0.00 0.00 2.39
3024 7245 7.344612 TCATATTCGGCACCTTATATCCATACT 59.655 37.037 0.00 0.00 0.00 2.12
3025 7246 8.638873 CATATTCGGCACCTTATATCCATACTA 58.361 37.037 0.00 0.00 0.00 1.82
3026 7247 5.909621 TCGGCACCTTATATCCATACTAC 57.090 43.478 0.00 0.00 0.00 2.73
3027 7248 5.577100 TCGGCACCTTATATCCATACTACT 58.423 41.667 0.00 0.00 0.00 2.57
3028 7249 5.651139 TCGGCACCTTATATCCATACTACTC 59.349 44.000 0.00 0.00 0.00 2.59
3029 7250 5.417894 CGGCACCTTATATCCATACTACTCA 59.582 44.000 0.00 0.00 0.00 3.41
3030 7251 6.096987 CGGCACCTTATATCCATACTACTCAT 59.903 42.308 0.00 0.00 0.00 2.90
3031 7252 7.268586 GGCACCTTATATCCATACTACTCATG 58.731 42.308 0.00 0.00 0.00 3.07
3032 7253 6.758886 GCACCTTATATCCATACTACTCATGC 59.241 42.308 0.00 0.00 0.00 4.06
3033 7254 7.579531 GCACCTTATATCCATACTACTCATGCA 60.580 40.741 0.00 0.00 0.00 3.96
3034 7255 7.761704 CACCTTATATCCATACTACTCATGCAC 59.238 40.741 0.00 0.00 0.00 4.57
3035 7256 7.454694 ACCTTATATCCATACTACTCATGCACA 59.545 37.037 0.00 0.00 0.00 4.57
3036 7257 8.481314 CCTTATATCCATACTACTCATGCACAT 58.519 37.037 0.00 0.00 0.00 3.21
3037 7258 9.310716 CTTATATCCATACTACTCATGCACATG 57.689 37.037 4.18 4.18 40.09 3.21
3038 7259 5.557576 ATCCATACTACTCATGCACATGT 57.442 39.130 10.27 0.00 39.72 3.21
3039 7260 5.357742 TCCATACTACTCATGCACATGTT 57.642 39.130 10.27 2.35 39.72 2.71
3040 7261 5.118286 TCCATACTACTCATGCACATGTTG 58.882 41.667 10.27 7.47 39.72 3.33
3041 7262 5.104982 TCCATACTACTCATGCACATGTTGA 60.105 40.000 10.27 0.00 39.72 3.18
3042 7263 5.761726 CCATACTACTCATGCACATGTTGAT 59.238 40.000 10.27 0.00 39.72 2.57
3043 7264 6.073385 CCATACTACTCATGCACATGTTGATC 60.073 42.308 10.27 0.00 39.72 2.92
3044 7265 5.095145 ACTACTCATGCACATGTTGATCT 57.905 39.130 10.27 0.00 39.72 2.75
3045 7266 6.225981 ACTACTCATGCACATGTTGATCTA 57.774 37.500 10.27 0.00 39.72 1.98
3046 7267 6.824553 ACTACTCATGCACATGTTGATCTAT 58.175 36.000 10.27 0.00 39.72 1.98
3047 7268 6.927936 ACTACTCATGCACATGTTGATCTATC 59.072 38.462 10.27 0.00 39.72 2.08
3048 7269 5.677567 ACTCATGCACATGTTGATCTATCA 58.322 37.500 10.27 0.00 39.72 2.15
3049 7270 6.296803 ACTCATGCACATGTTGATCTATCAT 58.703 36.000 10.27 0.00 39.72 2.45
3050 7271 6.771267 ACTCATGCACATGTTGATCTATCATT 59.229 34.615 10.27 0.00 39.72 2.57
3051 7272 7.041303 ACTCATGCACATGTTGATCTATCATTC 60.041 37.037 10.27 0.00 39.72 2.67
3052 7273 6.768861 TCATGCACATGTTGATCTATCATTCA 59.231 34.615 10.27 0.00 39.72 2.57
3053 7274 7.447238 TCATGCACATGTTGATCTATCATTCAT 59.553 33.333 10.27 0.50 39.72 2.57
3054 7275 6.966021 TGCACATGTTGATCTATCATTCATG 58.034 36.000 22.59 22.59 44.82 3.07
3055 7276 6.768861 TGCACATGTTGATCTATCATTCATGA 59.231 34.615 26.72 13.91 43.65 3.07
3057 7278 7.963465 GCACATGTTGATCTATCATTCATGATC 59.037 37.037 26.72 19.15 43.72 2.92
3058 7279 8.999431 CACATGTTGATCTATCATTCATGATCA 58.001 33.333 26.72 0.00 43.72 2.92
3059 7280 9.569122 ACATGTTGATCTATCATTCATGATCAA 57.431 29.630 26.72 11.63 46.84 2.57
3063 7284 8.891671 TTGATCTATCATTCATGATCAAACGA 57.108 30.769 12.84 0.00 46.37 3.85
3064 7285 8.302965 TGATCTATCATTCATGATCAAACGAC 57.697 34.615 5.53 0.00 43.72 4.34
3065 7286 6.753897 TCTATCATTCATGATCAAACGACG 57.246 37.500 5.53 0.00 43.72 5.12
3066 7287 4.801147 ATCATTCATGATCAAACGACGG 57.199 40.909 0.00 0.00 43.72 4.79
3067 7288 3.855858 TCATTCATGATCAAACGACGGA 58.144 40.909 0.00 0.00 0.00 4.69
3068 7289 3.616821 TCATTCATGATCAAACGACGGAC 59.383 43.478 0.00 0.00 0.00 4.79
3069 7290 2.734276 TCATGATCAAACGACGGACA 57.266 45.000 0.00 0.00 0.00 4.02
3070 7291 3.033368 TCATGATCAAACGACGGACAA 57.967 42.857 0.00 0.00 0.00 3.18
3071 7292 2.734606 TCATGATCAAACGACGGACAAC 59.265 45.455 0.00 0.00 0.00 3.32
3072 7293 2.226602 TGATCAAACGACGGACAACA 57.773 45.000 0.00 0.00 0.00 3.33
3073 7294 2.552031 TGATCAAACGACGGACAACAA 58.448 42.857 0.00 0.00 0.00 2.83
3074 7295 2.937149 TGATCAAACGACGGACAACAAA 59.063 40.909 0.00 0.00 0.00 2.83
3075 7296 3.374367 TGATCAAACGACGGACAACAAAA 59.626 39.130 0.00 0.00 0.00 2.44
3076 7297 4.035792 TGATCAAACGACGGACAACAAAAT 59.964 37.500 0.00 0.00 0.00 1.82
3077 7298 4.358494 TCAAACGACGGACAACAAAATT 57.642 36.364 0.00 0.00 0.00 1.82
3078 7299 5.481200 TCAAACGACGGACAACAAAATTA 57.519 34.783 0.00 0.00 0.00 1.40
3079 7300 5.877031 TCAAACGACGGACAACAAAATTAA 58.123 33.333 0.00 0.00 0.00 1.40
3080 7301 5.966503 TCAAACGACGGACAACAAAATTAAG 59.033 36.000 0.00 0.00 0.00 1.85
3081 7302 3.880610 ACGACGGACAACAAAATTAAGC 58.119 40.909 0.00 0.00 0.00 3.09
3082 7303 3.562557 ACGACGGACAACAAAATTAAGCT 59.437 39.130 0.00 0.00 0.00 3.74
3083 7304 3.906008 CGACGGACAACAAAATTAAGCTG 59.094 43.478 0.00 0.00 0.00 4.24
3084 7305 3.638484 ACGGACAACAAAATTAAGCTGC 58.362 40.909 0.00 0.00 0.00 5.25
3085 7306 3.067461 ACGGACAACAAAATTAAGCTGCA 59.933 39.130 1.02 0.00 0.00 4.41
3086 7307 4.047822 CGGACAACAAAATTAAGCTGCAA 58.952 39.130 1.02 0.00 0.00 4.08
3087 7308 4.505922 CGGACAACAAAATTAAGCTGCAAA 59.494 37.500 1.02 0.00 0.00 3.68
3088 7309 5.332506 CGGACAACAAAATTAAGCTGCAAAG 60.333 40.000 1.02 0.00 0.00 2.77
3089 7310 5.050159 GGACAACAAAATTAAGCTGCAAAGG 60.050 40.000 1.02 0.00 0.00 3.11
3090 7311 5.669477 ACAACAAAATTAAGCTGCAAAGGA 58.331 33.333 1.02 0.00 0.00 3.36
3091 7312 6.112058 ACAACAAAATTAAGCTGCAAAGGAA 58.888 32.000 1.02 0.00 0.00 3.36
3092 7313 6.037062 ACAACAAAATTAAGCTGCAAAGGAAC 59.963 34.615 1.02 0.00 0.00 3.62
3093 7314 5.669477 ACAAAATTAAGCTGCAAAGGAACA 58.331 33.333 1.02 0.00 0.00 3.18
3094 7315 5.523552 ACAAAATTAAGCTGCAAAGGAACAC 59.476 36.000 1.02 0.00 0.00 3.32
3095 7316 4.935352 AATTAAGCTGCAAAGGAACACA 57.065 36.364 1.02 0.00 0.00 3.72
3096 7317 4.935352 ATTAAGCTGCAAAGGAACACAA 57.065 36.364 1.02 0.00 0.00 3.33
3097 7318 2.877043 AAGCTGCAAAGGAACACAAG 57.123 45.000 1.02 0.00 0.00 3.16
3098 7319 2.057137 AGCTGCAAAGGAACACAAGA 57.943 45.000 1.02 0.00 0.00 3.02
3099 7320 2.590821 AGCTGCAAAGGAACACAAGAT 58.409 42.857 1.02 0.00 0.00 2.40
3100 7321 2.555757 AGCTGCAAAGGAACACAAGATC 59.444 45.455 1.02 0.00 0.00 2.75
3101 7322 2.666619 GCTGCAAAGGAACACAAGATCG 60.667 50.000 0.00 0.00 0.00 3.69
3102 7323 1.879380 TGCAAAGGAACACAAGATCGG 59.121 47.619 0.00 0.00 0.00 4.18
3103 7324 1.401539 GCAAAGGAACACAAGATCGGC 60.402 52.381 0.00 0.00 0.00 5.54
3104 7325 2.154462 CAAAGGAACACAAGATCGGCT 58.846 47.619 0.00 0.00 0.00 5.52
3105 7326 1.813513 AAGGAACACAAGATCGGCTG 58.186 50.000 0.00 0.00 0.00 4.85
3106 7327 0.674895 AGGAACACAAGATCGGCTGC 60.675 55.000 0.00 0.00 0.00 5.25
3107 7328 0.955428 GGAACACAAGATCGGCTGCA 60.955 55.000 0.50 0.00 0.00 4.41
3108 7329 0.874390 GAACACAAGATCGGCTGCAA 59.126 50.000 0.50 0.00 0.00 4.08
3109 7330 1.266718 GAACACAAGATCGGCTGCAAA 59.733 47.619 0.50 0.00 0.00 3.68
3110 7331 0.593128 ACACAAGATCGGCTGCAAAC 59.407 50.000 0.50 0.00 0.00 2.93
3111 7332 0.453282 CACAAGATCGGCTGCAAACG 60.453 55.000 0.50 3.50 0.00 3.60
3112 7333 1.135315 CAAGATCGGCTGCAAACGG 59.865 57.895 0.50 0.00 0.00 4.44
3113 7334 1.003839 AAGATCGGCTGCAAACGGA 60.004 52.632 0.50 4.75 0.00 4.69
3114 7335 1.298859 AAGATCGGCTGCAAACGGAC 61.299 55.000 0.50 4.91 0.00 4.79
3115 7336 2.031919 ATCGGCTGCAAACGGACA 59.968 55.556 0.50 0.00 0.00 4.02
3116 7337 1.369091 GATCGGCTGCAAACGGACAT 61.369 55.000 0.50 0.00 0.00 3.06
3117 7338 0.107897 ATCGGCTGCAAACGGACATA 60.108 50.000 0.50 0.00 0.00 2.29
3118 7339 0.320858 TCGGCTGCAAACGGACATAA 60.321 50.000 0.50 0.00 0.00 1.90
3119 7340 0.179200 CGGCTGCAAACGGACATAAC 60.179 55.000 0.50 0.00 0.00 1.89
3120 7341 0.878416 GGCTGCAAACGGACATAACA 59.122 50.000 0.50 0.00 0.00 2.41
3121 7342 1.472480 GGCTGCAAACGGACATAACAT 59.528 47.619 0.50 0.00 0.00 2.71
3122 7343 2.680841 GGCTGCAAACGGACATAACATA 59.319 45.455 0.50 0.00 0.00 2.29
3123 7344 3.486875 GGCTGCAAACGGACATAACATAC 60.487 47.826 0.50 0.00 0.00 2.39
3124 7345 3.374058 GCTGCAAACGGACATAACATACT 59.626 43.478 0.00 0.00 0.00 2.12
3125 7346 4.142687 GCTGCAAACGGACATAACATACTT 60.143 41.667 0.00 0.00 0.00 2.24
3126 7347 5.539582 TGCAAACGGACATAACATACTTC 57.460 39.130 0.00 0.00 0.00 3.01
3127 7348 4.998033 TGCAAACGGACATAACATACTTCA 59.002 37.500 0.00 0.00 0.00 3.02
3128 7349 5.106869 TGCAAACGGACATAACATACTTCAC 60.107 40.000 0.00 0.00 0.00 3.18
3129 7350 5.672819 GCAAACGGACATAACATACTTCACC 60.673 44.000 0.00 0.00 0.00 4.02
3130 7351 4.811969 ACGGACATAACATACTTCACCA 57.188 40.909 0.00 0.00 0.00 4.17
3131 7352 4.501071 ACGGACATAACATACTTCACCAC 58.499 43.478 0.00 0.00 0.00 4.16
3132 7353 4.020928 ACGGACATAACATACTTCACCACA 60.021 41.667 0.00 0.00 0.00 4.17
3133 7354 5.116180 CGGACATAACATACTTCACCACAT 58.884 41.667 0.00 0.00 0.00 3.21
3134 7355 5.234329 CGGACATAACATACTTCACCACATC 59.766 44.000 0.00 0.00 0.00 3.06
3135 7356 5.527582 GGACATAACATACTTCACCACATCC 59.472 44.000 0.00 0.00 0.00 3.51
3136 7357 6.061022 ACATAACATACTTCACCACATCCA 57.939 37.500 0.00 0.00 0.00 3.41
3137 7358 6.480763 ACATAACATACTTCACCACATCCAA 58.519 36.000 0.00 0.00 0.00 3.53
3138 7359 6.945435 ACATAACATACTTCACCACATCCAAA 59.055 34.615 0.00 0.00 0.00 3.28
3139 7360 7.450014 ACATAACATACTTCACCACATCCAAAA 59.550 33.333 0.00 0.00 0.00 2.44
3140 7361 6.723298 AACATACTTCACCACATCCAAAAA 57.277 33.333 0.00 0.00 0.00 1.94
3164 7385 4.744316 GTTCGTCCACGGACAAGT 57.256 55.556 16.23 0.00 46.62 3.16
3165 7386 2.981997 GTTCGTCCACGGACAAGTT 58.018 52.632 16.23 0.00 46.62 2.66
3166 7387 0.857287 GTTCGTCCACGGACAAGTTC 59.143 55.000 16.23 0.00 46.62 3.01
3167 7388 0.460722 TTCGTCCACGGACAAGTTCA 59.539 50.000 16.23 0.00 44.77 3.18
3168 7389 0.677288 TCGTCCACGGACAAGTTCAT 59.323 50.000 16.23 0.00 44.77 2.57
3169 7390 1.887854 TCGTCCACGGACAAGTTCATA 59.112 47.619 16.23 0.00 44.77 2.15
3170 7391 2.296752 TCGTCCACGGACAAGTTCATAA 59.703 45.455 16.23 0.00 44.77 1.90
3171 7392 3.061322 CGTCCACGGACAAGTTCATAAA 58.939 45.455 16.23 0.00 44.77 1.40
3172 7393 3.120786 CGTCCACGGACAAGTTCATAAAC 60.121 47.826 16.23 0.00 44.77 2.01
3173 7394 4.062991 GTCCACGGACAAGTTCATAAACT 58.937 43.478 11.43 0.00 44.02 2.66
3174 7395 6.755380 CGTCCACGGACAAGTTCATAAACTT 61.755 44.000 16.23 0.00 42.70 2.66
3175 7396 8.455349 CGTCCACGGACAAGTTCATAAACTTC 62.455 46.154 16.23 0.00 43.29 3.01
3210 7431 8.525290 AAACAATATAAACATTGAGGAGGAGG 57.475 34.615 3.01 0.00 38.01 4.30
3211 7432 6.605119 ACAATATAAACATTGAGGAGGAGGG 58.395 40.000 3.01 0.00 38.01 4.30
3212 7433 5.850046 ATATAAACATTGAGGAGGAGGGG 57.150 43.478 0.00 0.00 0.00 4.79
3213 7434 1.002857 AAACATTGAGGAGGAGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
3214 7435 1.575447 AACATTGAGGAGGAGGGGGC 61.575 60.000 0.00 0.00 0.00 5.80
3215 7436 2.368878 ATTGAGGAGGAGGGGGCC 60.369 66.667 0.00 0.00 0.00 5.80
3221 7442 3.561241 GAGGAGGGGGCCGGAATC 61.561 72.222 5.05 0.00 0.00 2.52
3222 7443 4.431524 AGGAGGGGGCCGGAATCA 62.432 66.667 5.05 0.00 0.00 2.57
3223 7444 4.191015 GGAGGGGGCCGGAATCAC 62.191 72.222 5.05 0.00 0.00 3.06
3224 7445 4.191015 GAGGGGGCCGGAATCACC 62.191 72.222 5.05 3.95 0.00 4.02
3226 7447 4.815108 GGGGGCCGGAATCACCAC 62.815 72.222 5.05 0.00 38.90 4.16
3227 7448 3.728373 GGGGCCGGAATCACCACT 61.728 66.667 5.05 0.00 38.90 4.00
3228 7449 2.355115 GGGCCGGAATCACCACTT 59.645 61.111 5.05 0.00 38.90 3.16
3229 7450 1.749258 GGGCCGGAATCACCACTTC 60.749 63.158 5.05 0.00 38.90 3.01
3230 7451 1.749258 GGCCGGAATCACCACTTCC 60.749 63.158 5.05 0.00 39.06 3.46
3231 7452 1.299976 GCCGGAATCACCACTTCCT 59.700 57.895 5.05 0.00 40.07 3.36
3232 7453 0.744771 GCCGGAATCACCACTTCCTC 60.745 60.000 5.05 0.00 40.07 3.71
3233 7454 0.460284 CCGGAATCACCACTTCCTCG 60.460 60.000 0.00 0.00 40.07 4.63
3234 7455 1.084370 CGGAATCACCACTTCCTCGC 61.084 60.000 1.05 0.00 40.07 5.03
3235 7456 0.250513 GGAATCACCACTTCCTCGCT 59.749 55.000 0.00 0.00 39.30 4.93
3236 7457 1.363744 GAATCACCACTTCCTCGCTG 58.636 55.000 0.00 0.00 0.00 5.18
3237 7458 0.036010 AATCACCACTTCCTCGCTGG 60.036 55.000 0.00 0.00 37.10 4.85
3238 7459 1.903877 ATCACCACTTCCTCGCTGGG 61.904 60.000 0.00 0.00 36.20 4.45
3239 7460 4.021925 ACCACTTCCTCGCTGGGC 62.022 66.667 0.00 0.00 36.20 5.36
3240 7461 4.785453 CCACTTCCTCGCTGGGCC 62.785 72.222 0.00 0.00 36.20 5.80
3241 7462 3.710722 CACTTCCTCGCTGGGCCT 61.711 66.667 4.53 0.00 36.20 5.19
3242 7463 2.930562 ACTTCCTCGCTGGGCCTT 60.931 61.111 4.53 0.00 36.20 4.35
3243 7464 2.352805 CTTCCTCGCTGGGCCTTT 59.647 61.111 4.53 0.00 36.20 3.11
3244 7465 2.034066 TTCCTCGCTGGGCCTTTG 59.966 61.111 4.53 0.00 36.20 2.77
3245 7466 3.567579 TTCCTCGCTGGGCCTTTGG 62.568 63.158 4.53 0.00 36.20 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.010472 TGAGATCTGCAGGAAAATGGGAA 59.990 43.478 15.13 0.00 0.00 3.97
32 33 1.067669 TCCTTGCTCGAAGATCCATCG 59.932 52.381 11.25 11.25 41.53 3.84
364 382 2.972713 TCATCCAGATAGGTTACAGGGC 59.027 50.000 0.00 0.00 39.02 5.19
365 383 3.580458 CCTCATCCAGATAGGTTACAGGG 59.420 52.174 0.00 0.00 39.02 4.45
441 466 1.972660 GACGGCTGAAGGCTACCCAT 61.973 60.000 0.00 0.00 41.46 4.00
451 476 1.324383 TACTGTCAGTGACGGCTGAA 58.676 50.000 28.39 11.54 45.75 3.02
456 481 3.297830 TTGTGATACTGTCAGTGACGG 57.702 47.619 27.16 27.16 43.83 4.79
464 489 3.941483 CCAGGTCCATTTGTGATACTGTC 59.059 47.826 0.00 0.00 0.00 3.51
470 495 0.409092 TGGCCAGGTCCATTTGTGAT 59.591 50.000 0.00 0.00 0.00 3.06
570 628 7.302524 GTCGATTTTCTAGGTGCAATTTGTAA 58.697 34.615 0.00 0.00 0.00 2.41
573 631 4.788100 CGTCGATTTTCTAGGTGCAATTTG 59.212 41.667 0.00 0.00 0.00 2.32
576 637 3.857052 TCGTCGATTTTCTAGGTGCAAT 58.143 40.909 0.00 0.00 0.00 3.56
581 642 6.164176 ACAGAATTTCGTCGATTTTCTAGGT 58.836 36.000 15.71 10.33 0.00 3.08
602 663 0.247460 TGTCCATCCGAGCTTGACAG 59.753 55.000 1.22 0.00 32.56 3.51
604 665 0.247736 AGTGTCCATCCGAGCTTGAC 59.752 55.000 1.22 0.00 0.00 3.18
620 681 3.051081 ACAAGCAAGAGCCTTCTAGTG 57.949 47.619 0.00 0.00 43.56 2.74
680 741 0.588252 CCGCCTCAGTTGTTGACTTG 59.412 55.000 0.00 0.00 36.10 3.16
681 742 0.535102 CCCGCCTCAGTTGTTGACTT 60.535 55.000 0.00 0.00 36.10 3.01
682 743 1.071471 CCCGCCTCAGTTGTTGACT 59.929 57.895 0.00 0.00 39.89 3.41
719 780 1.439353 GCCCACATGTCTGCCATACG 61.439 60.000 0.00 0.00 30.71 3.06
787 2050 3.257933 GCGGAGGCAGTTGTGAAG 58.742 61.111 0.00 0.00 39.62 3.02
830 2099 0.389687 CGGCGGGCATCAATTGTTTT 60.390 50.000 5.13 0.00 0.00 2.43
982 4202 4.427661 GCGCCGTCTCTGCAGAGT 62.428 66.667 36.32 0.00 42.60 3.24
996 4216 4.166011 GTTGTCGAGGCCATGCGC 62.166 66.667 5.01 0.00 0.00 6.09
1110 4334 4.329545 TCCAGCACGGCCTTCACC 62.330 66.667 0.00 0.00 33.14 4.02
1327 4551 3.806380 ACTCTAGATCGACCGAGCTTAA 58.194 45.455 15.36 3.91 41.46 1.85
1328 4552 3.472283 ACTCTAGATCGACCGAGCTTA 57.528 47.619 15.36 4.22 41.46 3.09
1329 4553 2.335316 ACTCTAGATCGACCGAGCTT 57.665 50.000 15.36 0.85 41.46 3.74
1330 4554 2.629137 TCTACTCTAGATCGACCGAGCT 59.371 50.000 14.59 14.59 43.75 4.09
1366 4590 5.753744 ACGATCGATCAAGATCTACAGAAC 58.246 41.667 24.34 0.00 43.52 3.01
1395 4626 3.792124 GCAGGTTCCTGAAGAAACAAACG 60.792 47.826 21.32 0.00 45.37 3.60
1665 5025 2.161808 ACTCGGTGATCTCGTAGTGTTG 59.838 50.000 8.42 0.00 0.00 3.33
1668 5029 3.196463 ACTACTCGGTGATCTCGTAGTG 58.804 50.000 11.00 9.17 39.26 2.74
1679 5044 2.708051 TCAGACCAGTACTACTCGGTG 58.292 52.381 7.32 0.00 32.43 4.94
1682 5052 7.012515 AGTGAATATTCAGACCAGTACTACTCG 59.987 40.741 18.47 0.00 37.98 4.18
1733 5131 1.160137 GTTCATCTCCACCTGCACAC 58.840 55.000 0.00 0.00 0.00 3.82
1863 5261 2.681778 AGCACCTCGGAGTCCAGG 60.682 66.667 20.17 20.17 35.69 4.45
1932 5342 2.654912 GAGAAACGTGACGGGCGTG 61.655 63.158 10.66 0.00 42.10 5.34
1933 5343 2.355481 GAGAAACGTGACGGGCGT 60.355 61.111 10.66 0.00 45.07 5.68
1934 5344 3.110178 GGAGAAACGTGACGGGCG 61.110 66.667 10.66 0.00 0.00 6.13
1935 5345 2.027625 CAGGAGAAACGTGACGGGC 61.028 63.158 10.66 0.00 36.62 6.13
1936 5346 1.374252 CCAGGAGAAACGTGACGGG 60.374 63.158 10.66 0.00 36.62 5.28
1937 5347 2.027625 GCCAGGAGAAACGTGACGG 61.028 63.158 10.66 0.00 36.62 4.79
1938 5348 0.878523 TTGCCAGGAGAAACGTGACG 60.879 55.000 2.24 2.24 36.62 4.35
1939 5349 0.586802 GTTGCCAGGAGAAACGTGAC 59.413 55.000 0.00 0.00 36.62 3.67
1940 5350 0.534203 GGTTGCCAGGAGAAACGTGA 60.534 55.000 0.00 0.00 36.62 4.35
1959 5369 0.867753 GACTGCATGTACTCCGAGCG 60.868 60.000 0.00 0.00 0.00 5.03
1993 5413 7.389884 CCTGAATGAGAAAAGAAAGATGAGTCA 59.610 37.037 0.00 0.00 0.00 3.41
1996 5416 7.684937 ACCTGAATGAGAAAAGAAAGATGAG 57.315 36.000 0.00 0.00 0.00 2.90
1999 5419 7.120432 GTGCTACCTGAATGAGAAAAGAAAGAT 59.880 37.037 0.00 0.00 0.00 2.40
2036 5458 2.263540 GTCGCCCCTTGCTCGTAA 59.736 61.111 0.00 0.00 38.05 3.18
2050 5472 1.064296 CTCTTGACGATCGGGGTCG 59.936 63.158 20.98 0.00 46.56 4.79
2228 5650 3.543680 TCCTCGACAATTTCCATCTCC 57.456 47.619 0.00 0.00 0.00 3.71
2273 5707 2.121786 GTTTACGTCACACAGCGAAGA 58.878 47.619 0.00 0.00 0.00 2.87
2305 5748 6.772716 TCTTTATTCATCCCCACTCTTTATGC 59.227 38.462 0.00 0.00 0.00 3.14
2344 5787 6.579865 TCCGAAAAGAGGAATAACAGGATAC 58.420 40.000 0.00 0.00 34.33 2.24
2463 5918 8.071177 AGTCATTTATTTTGAAATGGAGGGAG 57.929 34.615 8.56 0.00 43.87 4.30
2464 5919 9.189156 CTAGTCATTTATTTTGAAATGGAGGGA 57.811 33.333 8.56 0.00 43.87 4.20
2481 5936 9.167311 GATGATCCAACTTTGTACTAGTCATTT 57.833 33.333 0.00 0.00 0.00 2.32
2482 5937 8.543774 AGATGATCCAACTTTGTACTAGTCATT 58.456 33.333 0.00 0.00 0.00 2.57
2489 5944 9.739276 TCAAAATAGATGATCCAACTTTGTACT 57.261 29.630 0.00 0.00 0.00 2.73
2492 5947 9.696917 GTTTCAAAATAGATGATCCAACTTTGT 57.303 29.630 0.00 0.00 0.00 2.83
2493 5948 8.853345 CGTTTCAAAATAGATGATCCAACTTTG 58.147 33.333 0.00 0.00 0.00 2.77
2494 5949 8.028938 CCGTTTCAAAATAGATGATCCAACTTT 58.971 33.333 0.00 0.00 0.00 2.66
2496 5951 6.884295 TCCGTTTCAAAATAGATGATCCAACT 59.116 34.615 0.00 0.00 0.00 3.16
2497 5952 7.083875 TCCGTTTCAAAATAGATGATCCAAC 57.916 36.000 0.00 0.00 0.00 3.77
2499 5954 7.393234 ACTTTCCGTTTCAAAATAGATGATCCA 59.607 33.333 0.00 0.00 0.00 3.41
2502 5957 7.029563 GCACTTTCCGTTTCAAAATAGATGAT 58.970 34.615 0.00 0.00 0.00 2.45
2503 5958 6.206634 AGCACTTTCCGTTTCAAAATAGATGA 59.793 34.615 0.00 0.00 0.00 2.92
2504 5959 6.306356 CAGCACTTTCCGTTTCAAAATAGATG 59.694 38.462 0.00 0.00 0.00 2.90
2505 5960 6.381801 CAGCACTTTCCGTTTCAAAATAGAT 58.618 36.000 0.00 0.00 0.00 1.98
2506 5961 5.757886 CAGCACTTTCCGTTTCAAAATAGA 58.242 37.500 0.00 0.00 0.00 1.98
2507 5962 4.382754 GCAGCACTTTCCGTTTCAAAATAG 59.617 41.667 0.00 0.00 0.00 1.73
2508 5963 4.202060 TGCAGCACTTTCCGTTTCAAAATA 60.202 37.500 0.00 0.00 0.00 1.40
2509 5964 3.123050 GCAGCACTTTCCGTTTCAAAAT 58.877 40.909 0.00 0.00 0.00 1.82
2510 5965 2.094494 TGCAGCACTTTCCGTTTCAAAA 60.094 40.909 0.00 0.00 0.00 2.44
2511 5966 1.474478 TGCAGCACTTTCCGTTTCAAA 59.526 42.857 0.00 0.00 0.00 2.69
2512 5967 1.098869 TGCAGCACTTTCCGTTTCAA 58.901 45.000 0.00 0.00 0.00 2.69
2513 5968 1.098869 TTGCAGCACTTTCCGTTTCA 58.901 45.000 0.00 0.00 0.00 2.69
2514 5969 1.477105 GTTGCAGCACTTTCCGTTTC 58.523 50.000 0.00 0.00 0.00 2.78
2515 5970 0.102300 GGTTGCAGCACTTTCCGTTT 59.898 50.000 2.05 0.00 0.00 3.60
2516 5971 1.733526 GGTTGCAGCACTTTCCGTT 59.266 52.632 2.05 0.00 0.00 4.44
2517 5972 2.542907 CGGTTGCAGCACTTTCCGT 61.543 57.895 15.21 0.00 34.38 4.69
2518 5973 1.781025 TTCGGTTGCAGCACTTTCCG 61.781 55.000 16.56 16.56 39.40 4.30
2519 5974 0.040067 CTTCGGTTGCAGCACTTTCC 60.040 55.000 2.05 0.00 0.00 3.13
2520 5975 0.663153 ACTTCGGTTGCAGCACTTTC 59.337 50.000 2.05 0.00 0.00 2.62
2521 5976 1.065551 GAACTTCGGTTGCAGCACTTT 59.934 47.619 2.05 0.00 38.41 2.66
2522 5977 0.663153 GAACTTCGGTTGCAGCACTT 59.337 50.000 2.05 0.00 38.41 3.16
2523 5978 1.166531 GGAACTTCGGTTGCAGCACT 61.167 55.000 2.05 0.00 44.11 4.40
2553 6008 4.430441 ACTGACCATCTAGAGGAAAACCT 58.570 43.478 5.84 0.00 0.00 3.50
2579 6034 5.749596 TGAAACAACGATTGACAGTCATT 57.250 34.783 3.45 0.04 0.00 2.57
2617 6072 0.934496 CCAGAAAGCAACGTTCGACA 59.066 50.000 0.00 0.00 0.00 4.35
2634 6089 2.745884 CCGAATTGGAGCACGCCA 60.746 61.111 0.00 0.00 42.00 5.69
2709 6164 1.693627 AGAATAGATCCGGTCGCTGT 58.306 50.000 0.00 0.00 0.00 4.40
2738 6193 0.393077 AAGACACCCCGACACTTGAG 59.607 55.000 0.00 0.00 0.00 3.02
2781 6982 0.036765 AGCCGTAATTCGCCAAGTCA 60.037 50.000 0.00 0.00 38.35 3.41
2797 6998 5.923684 TGATTTTTACGTGGAAAATGAAGCC 59.076 36.000 21.57 11.82 36.96 4.35
2867 7088 6.681729 AAGAGTCACTTAATCCTGTAACCA 57.318 37.500 0.00 0.00 37.03 3.67
2881 7102 9.750783 TCTAATAGGTTAAGTGTAAGAGTCACT 57.249 33.333 0.00 0.00 46.30 3.41
2895 7116 6.152323 CGGCTATAGGTGCTCTAATAGGTTAA 59.848 42.308 1.04 0.00 0.00 2.01
2907 7128 0.753262 CAAGTCCGGCTATAGGTGCT 59.247 55.000 0.00 0.00 0.00 4.40
2908 7129 0.880718 GCAAGTCCGGCTATAGGTGC 60.881 60.000 0.00 0.00 0.00 5.01
2909 7130 0.464036 TGCAAGTCCGGCTATAGGTG 59.536 55.000 0.00 0.00 0.00 4.00
2910 7131 1.200519 TTGCAAGTCCGGCTATAGGT 58.799 50.000 0.00 0.00 0.00 3.08
2911 7132 2.325583 TTTGCAAGTCCGGCTATAGG 57.674 50.000 0.00 0.00 0.00 2.57
2912 7133 3.059597 CGAATTTGCAAGTCCGGCTATAG 60.060 47.826 0.00 0.00 0.00 1.31
2913 7134 2.869801 CGAATTTGCAAGTCCGGCTATA 59.130 45.455 0.00 0.00 0.00 1.31
2914 7135 1.670811 CGAATTTGCAAGTCCGGCTAT 59.329 47.619 0.00 0.00 0.00 2.97
2915 7136 1.083489 CGAATTTGCAAGTCCGGCTA 58.917 50.000 0.00 0.00 0.00 3.93
2916 7137 1.586154 CCGAATTTGCAAGTCCGGCT 61.586 55.000 6.69 0.00 0.00 5.52
2917 7138 1.154035 CCGAATTTGCAAGTCCGGC 60.154 57.895 6.69 0.00 0.00 6.13
2918 7139 1.154035 GCCGAATTTGCAAGTCCGG 60.154 57.895 15.37 15.37 0.00 5.14
2919 7140 1.154035 GGCCGAATTTGCAAGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
2920 7141 1.215382 GGGCCGAATTTGCAAGTCC 59.785 57.895 0.00 0.00 0.00 3.85
2921 7142 1.215382 GGGGCCGAATTTGCAAGTC 59.785 57.895 0.00 0.42 0.00 3.01
2922 7143 1.228862 AGGGGCCGAATTTGCAAGT 60.229 52.632 0.00 0.00 0.00 3.16
2923 7144 1.250154 TGAGGGGCCGAATTTGCAAG 61.250 55.000 0.00 0.00 0.00 4.01
2924 7145 0.829602 TTGAGGGGCCGAATTTGCAA 60.830 50.000 0.00 0.00 0.00 4.08
2925 7146 0.829602 TTTGAGGGGCCGAATTTGCA 60.830 50.000 0.00 0.00 0.00 4.08
2926 7147 0.536724 ATTTGAGGGGCCGAATTTGC 59.463 50.000 0.00 0.00 0.00 3.68
2927 7148 1.136891 GGATTTGAGGGGCCGAATTTG 59.863 52.381 0.00 0.00 0.00 2.32
2928 7149 1.007118 AGGATTTGAGGGGCCGAATTT 59.993 47.619 0.00 0.00 0.00 1.82
2929 7150 0.631212 AGGATTTGAGGGGCCGAATT 59.369 50.000 0.00 0.00 0.00 2.17
2930 7151 0.183731 GAGGATTTGAGGGGCCGAAT 59.816 55.000 0.00 0.00 0.00 3.34
2931 7152 1.607612 GAGGATTTGAGGGGCCGAA 59.392 57.895 0.00 0.00 0.00 4.30
2932 7153 2.731571 CGAGGATTTGAGGGGCCGA 61.732 63.158 0.00 0.00 0.00 5.54
2933 7154 2.203070 CGAGGATTTGAGGGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
2934 7155 2.193248 CCGAGGATTTGAGGGGCC 59.807 66.667 0.00 0.00 0.00 5.80
2935 7156 1.153147 GTCCGAGGATTTGAGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
2936 7157 1.144057 CGTCCGAGGATTTGAGGGG 59.856 63.158 0.00 0.00 0.00 4.79
2937 7158 1.521681 GCGTCCGAGGATTTGAGGG 60.522 63.158 0.00 0.00 0.00 4.30
2938 7159 1.878522 CGCGTCCGAGGATTTGAGG 60.879 63.158 0.00 0.00 36.29 3.86
2939 7160 2.517450 GCGCGTCCGAGGATTTGAG 61.517 63.158 8.43 0.00 36.29 3.02
2940 7161 2.508439 GCGCGTCCGAGGATTTGA 60.508 61.111 8.43 0.00 36.29 2.69
2941 7162 3.564027 GGCGCGTCCGAGGATTTG 61.564 66.667 8.43 0.00 36.29 2.32
2942 7163 4.832608 GGGCGCGTCCGAGGATTT 62.833 66.667 16.93 0.00 36.29 2.17
2963 7184 4.758251 TCAGTGCCCGCGGACATG 62.758 66.667 30.73 20.58 0.00 3.21
2964 7185 3.329542 AATCAGTGCCCGCGGACAT 62.330 57.895 30.73 8.78 0.00 3.06
2965 7186 3.950794 GAATCAGTGCCCGCGGACA 62.951 63.158 30.73 21.47 0.00 4.02
2966 7187 3.195698 GAATCAGTGCCCGCGGAC 61.196 66.667 30.73 18.13 0.00 4.79
2967 7188 3.390521 AGAATCAGTGCCCGCGGA 61.391 61.111 30.73 3.89 0.00 5.54
2968 7189 3.197790 CAGAATCAGTGCCCGCGG 61.198 66.667 21.04 21.04 0.00 6.46
2969 7190 3.869272 GCAGAATCAGTGCCCGCG 61.869 66.667 0.00 0.00 34.67 6.46
2970 7191 2.056481 GATGCAGAATCAGTGCCCGC 62.056 60.000 0.00 0.00 40.43 6.13
2971 7192 1.442526 GGATGCAGAATCAGTGCCCG 61.443 60.000 0.00 0.00 40.43 6.13
2972 7193 1.442526 CGGATGCAGAATCAGTGCCC 61.443 60.000 0.00 0.00 40.43 5.36
2973 7194 2.020131 CGGATGCAGAATCAGTGCC 58.980 57.895 0.00 0.00 40.43 5.01
2974 7195 1.354506 GCGGATGCAGAATCAGTGC 59.645 57.895 0.00 0.00 42.15 4.40
2985 7206 2.604914 CGAATATGAGGTATGCGGATGC 59.395 50.000 0.00 0.00 38.04 3.91
2990 7211 1.726791 GTGCCGAATATGAGGTATGCG 59.273 52.381 0.00 0.00 40.84 4.73
2991 7212 2.076863 GGTGCCGAATATGAGGTATGC 58.923 52.381 0.00 0.00 0.00 3.14
2992 7213 3.685139 AGGTGCCGAATATGAGGTATG 57.315 47.619 0.00 0.00 0.00 2.39
2993 7214 7.202011 GGATATAAGGTGCCGAATATGAGGTAT 60.202 40.741 0.00 0.00 0.00 2.73
2994 7215 6.097839 GGATATAAGGTGCCGAATATGAGGTA 59.902 42.308 0.00 0.00 0.00 3.08
2995 7216 5.104900 GGATATAAGGTGCCGAATATGAGGT 60.105 44.000 0.00 0.00 0.00 3.85
2996 7217 5.104941 TGGATATAAGGTGCCGAATATGAGG 60.105 44.000 0.00 0.00 0.00 3.86
2997 7218 5.977635 TGGATATAAGGTGCCGAATATGAG 58.022 41.667 0.00 0.00 0.00 2.90
2998 7219 6.560003 ATGGATATAAGGTGCCGAATATGA 57.440 37.500 0.00 0.00 0.00 2.15
2999 7220 7.500992 AGTATGGATATAAGGTGCCGAATATG 58.499 38.462 0.00 0.00 0.00 1.78
3000 7221 7.676683 AGTATGGATATAAGGTGCCGAATAT 57.323 36.000 0.00 0.00 0.00 1.28
3001 7222 7.837689 AGTAGTATGGATATAAGGTGCCGAATA 59.162 37.037 0.00 0.00 0.00 1.75
3002 7223 6.668283 AGTAGTATGGATATAAGGTGCCGAAT 59.332 38.462 0.00 0.00 0.00 3.34
3003 7224 6.014647 AGTAGTATGGATATAAGGTGCCGAA 58.985 40.000 0.00 0.00 0.00 4.30
3004 7225 5.577100 AGTAGTATGGATATAAGGTGCCGA 58.423 41.667 0.00 0.00 0.00 5.54
3005 7226 5.417894 TGAGTAGTATGGATATAAGGTGCCG 59.582 44.000 0.00 0.00 0.00 5.69
3006 7227 6.852420 TGAGTAGTATGGATATAAGGTGCC 57.148 41.667 0.00 0.00 0.00 5.01
3007 7228 6.758886 GCATGAGTAGTATGGATATAAGGTGC 59.241 42.308 0.00 0.00 0.00 5.01
3008 7229 7.761704 GTGCATGAGTAGTATGGATATAAGGTG 59.238 40.741 0.00 0.00 0.00 4.00
3009 7230 7.454694 TGTGCATGAGTAGTATGGATATAAGGT 59.545 37.037 0.00 0.00 0.00 3.50
3010 7231 7.840931 TGTGCATGAGTAGTATGGATATAAGG 58.159 38.462 0.00 0.00 0.00 2.69
3011 7232 9.310716 CATGTGCATGAGTAGTATGGATATAAG 57.689 37.037 6.32 0.00 41.20 1.73
3012 7233 8.815912 ACATGTGCATGAGTAGTATGGATATAA 58.184 33.333 17.85 0.00 41.20 0.98
3013 7234 8.366359 ACATGTGCATGAGTAGTATGGATATA 57.634 34.615 17.85 0.00 41.20 0.86
3014 7235 7.250032 ACATGTGCATGAGTAGTATGGATAT 57.750 36.000 17.85 0.00 41.20 1.63
3015 7236 6.670695 ACATGTGCATGAGTAGTATGGATA 57.329 37.500 17.85 0.00 41.20 2.59
3016 7237 5.557576 ACATGTGCATGAGTAGTATGGAT 57.442 39.130 17.85 0.00 41.20 3.41
3017 7238 5.104982 TCAACATGTGCATGAGTAGTATGGA 60.105 40.000 17.85 0.00 41.20 3.41
3018 7239 5.118286 TCAACATGTGCATGAGTAGTATGG 58.882 41.667 17.85 0.00 41.20 2.74
3019 7240 6.704937 AGATCAACATGTGCATGAGTAGTATG 59.295 38.462 17.85 6.12 41.20 2.39
3020 7241 6.824553 AGATCAACATGTGCATGAGTAGTAT 58.175 36.000 17.85 3.86 41.20 2.12
3021 7242 6.225981 AGATCAACATGTGCATGAGTAGTA 57.774 37.500 17.85 0.00 41.20 1.82
3022 7243 5.095145 AGATCAACATGTGCATGAGTAGT 57.905 39.130 17.85 1.47 41.20 2.73
3023 7244 6.927381 TGATAGATCAACATGTGCATGAGTAG 59.073 38.462 17.85 5.65 41.77 2.57
3024 7245 6.819284 TGATAGATCAACATGTGCATGAGTA 58.181 36.000 17.85 0.00 41.77 2.59
3025 7246 5.677567 TGATAGATCAACATGTGCATGAGT 58.322 37.500 17.85 3.71 41.77 3.41
3026 7247 6.803154 ATGATAGATCAACATGTGCATGAG 57.197 37.500 17.85 10.16 39.54 2.90
3027 7248 6.768861 TGAATGATAGATCAACATGTGCATGA 59.231 34.615 17.85 0.00 39.54 3.07
3028 7249 6.966021 TGAATGATAGATCAACATGTGCATG 58.034 36.000 10.31 10.31 40.69 4.06
3029 7250 7.447238 TCATGAATGATAGATCAACATGTGCAT 59.553 33.333 25.00 9.04 45.11 3.96
3030 7251 6.768861 TCATGAATGATAGATCAACATGTGCA 59.231 34.615 25.00 14.28 45.11 4.57
3031 7252 7.198306 TCATGAATGATAGATCAACATGTGC 57.802 36.000 25.00 3.40 45.11 4.57
3032 7253 8.999431 TGATCATGAATGATAGATCAACATGTG 58.001 33.333 25.00 14.06 46.84 3.21
3033 7254 9.569122 TTGATCATGAATGATAGATCAACATGT 57.431 29.630 25.00 18.48 46.62 3.21
3039 7260 7.115378 CGTCGTTTGATCATGAATGATAGATCA 59.885 37.037 0.00 0.00 46.84 2.92
3040 7261 7.411264 CCGTCGTTTGATCATGAATGATAGATC 60.411 40.741 0.00 0.00 46.84 2.75
3041 7262 6.367149 CCGTCGTTTGATCATGAATGATAGAT 59.633 38.462 0.00 0.00 46.84 1.98
3042 7263 5.691754 CCGTCGTTTGATCATGAATGATAGA 59.308 40.000 0.00 0.00 46.84 1.98
3043 7264 5.691754 TCCGTCGTTTGATCATGAATGATAG 59.308 40.000 0.00 0.00 46.84 2.08
3044 7265 5.462068 GTCCGTCGTTTGATCATGAATGATA 59.538 40.000 0.00 0.00 46.84 2.15
3046 7267 3.616821 GTCCGTCGTTTGATCATGAATGA 59.383 43.478 0.00 0.00 41.70 2.57
3047 7268 3.370672 TGTCCGTCGTTTGATCATGAATG 59.629 43.478 0.00 0.00 0.00 2.67
3048 7269 3.595173 TGTCCGTCGTTTGATCATGAAT 58.405 40.909 0.00 0.00 0.00 2.57
3049 7270 3.033368 TGTCCGTCGTTTGATCATGAA 57.967 42.857 0.00 0.00 0.00 2.57
3050 7271 2.734276 TGTCCGTCGTTTGATCATGA 57.266 45.000 0.00 0.00 0.00 3.07
3051 7272 2.478514 TGTTGTCCGTCGTTTGATCATG 59.521 45.455 0.00 0.00 0.00 3.07
3052 7273 2.761559 TGTTGTCCGTCGTTTGATCAT 58.238 42.857 0.00 0.00 0.00 2.45
3053 7274 2.226602 TGTTGTCCGTCGTTTGATCA 57.773 45.000 0.00 0.00 0.00 2.92
3054 7275 3.595709 TTTGTTGTCCGTCGTTTGATC 57.404 42.857 0.00 0.00 0.00 2.92
3055 7276 4.561735 ATTTTGTTGTCCGTCGTTTGAT 57.438 36.364 0.00 0.00 0.00 2.57
3056 7277 4.358494 AATTTTGTTGTCCGTCGTTTGA 57.642 36.364 0.00 0.00 0.00 2.69
3057 7278 5.331235 GCTTAATTTTGTTGTCCGTCGTTTG 60.331 40.000 0.00 0.00 0.00 2.93
3058 7279 4.736307 GCTTAATTTTGTTGTCCGTCGTTT 59.264 37.500 0.00 0.00 0.00 3.60
3059 7280 4.035909 AGCTTAATTTTGTTGTCCGTCGTT 59.964 37.500 0.00 0.00 0.00 3.85
3060 7281 3.562557 AGCTTAATTTTGTTGTCCGTCGT 59.437 39.130 0.00 0.00 0.00 4.34
3061 7282 3.906008 CAGCTTAATTTTGTTGTCCGTCG 59.094 43.478 0.00 0.00 0.00 5.12
3062 7283 3.668656 GCAGCTTAATTTTGTTGTCCGTC 59.331 43.478 0.00 0.00 0.00 4.79
3063 7284 3.067461 TGCAGCTTAATTTTGTTGTCCGT 59.933 39.130 0.00 0.00 0.00 4.69
3064 7285 3.637432 TGCAGCTTAATTTTGTTGTCCG 58.363 40.909 0.00 0.00 0.00 4.79
3065 7286 5.050159 CCTTTGCAGCTTAATTTTGTTGTCC 60.050 40.000 0.00 0.00 0.00 4.02
3066 7287 5.752955 TCCTTTGCAGCTTAATTTTGTTGTC 59.247 36.000 0.00 0.00 0.00 3.18
3067 7288 5.669477 TCCTTTGCAGCTTAATTTTGTTGT 58.331 33.333 0.00 0.00 0.00 3.32
3068 7289 6.036953 TGTTCCTTTGCAGCTTAATTTTGTTG 59.963 34.615 0.00 0.00 0.00 3.33
3069 7290 6.037062 GTGTTCCTTTGCAGCTTAATTTTGTT 59.963 34.615 0.00 0.00 0.00 2.83
3070 7291 5.523552 GTGTTCCTTTGCAGCTTAATTTTGT 59.476 36.000 0.00 0.00 0.00 2.83
3071 7292 5.523188 TGTGTTCCTTTGCAGCTTAATTTTG 59.477 36.000 0.00 0.00 0.00 2.44
3072 7293 5.669477 TGTGTTCCTTTGCAGCTTAATTTT 58.331 33.333 0.00 0.00 0.00 1.82
3073 7294 5.275067 TGTGTTCCTTTGCAGCTTAATTT 57.725 34.783 0.00 0.00 0.00 1.82
3074 7295 4.935352 TGTGTTCCTTTGCAGCTTAATT 57.065 36.364 0.00 0.00 0.00 1.40
3075 7296 4.584325 TCTTGTGTTCCTTTGCAGCTTAAT 59.416 37.500 0.00 0.00 0.00 1.40
3076 7297 3.951037 TCTTGTGTTCCTTTGCAGCTTAA 59.049 39.130 0.00 0.00 0.00 1.85
3077 7298 3.550820 TCTTGTGTTCCTTTGCAGCTTA 58.449 40.909 0.00 0.00 0.00 3.09
3078 7299 2.378038 TCTTGTGTTCCTTTGCAGCTT 58.622 42.857 0.00 0.00 0.00 3.74
3079 7300 2.057137 TCTTGTGTTCCTTTGCAGCT 57.943 45.000 0.00 0.00 0.00 4.24
3080 7301 2.666619 CGATCTTGTGTTCCTTTGCAGC 60.667 50.000 0.00 0.00 0.00 5.25
3081 7302 2.095567 CCGATCTTGTGTTCCTTTGCAG 60.096 50.000 0.00 0.00 0.00 4.41
3082 7303 1.879380 CCGATCTTGTGTTCCTTTGCA 59.121 47.619 0.00 0.00 0.00 4.08
3083 7304 1.401539 GCCGATCTTGTGTTCCTTTGC 60.402 52.381 0.00 0.00 0.00 3.68
3084 7305 2.095567 CAGCCGATCTTGTGTTCCTTTG 60.096 50.000 0.00 0.00 0.00 2.77
3085 7306 2.154462 CAGCCGATCTTGTGTTCCTTT 58.846 47.619 0.00 0.00 0.00 3.11
3086 7307 1.813513 CAGCCGATCTTGTGTTCCTT 58.186 50.000 0.00 0.00 0.00 3.36
3087 7308 0.674895 GCAGCCGATCTTGTGTTCCT 60.675 55.000 0.00 0.00 0.00 3.36
3088 7309 0.955428 TGCAGCCGATCTTGTGTTCC 60.955 55.000 0.00 0.00 0.00 3.62
3089 7310 0.874390 TTGCAGCCGATCTTGTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
3090 7311 1.001378 GTTTGCAGCCGATCTTGTGTT 60.001 47.619 0.00 0.00 0.00 3.32
3091 7312 0.593128 GTTTGCAGCCGATCTTGTGT 59.407 50.000 0.00 0.00 0.00 3.72
3092 7313 0.453282 CGTTTGCAGCCGATCTTGTG 60.453 55.000 1.22 0.00 0.00 3.33
3093 7314 1.577328 CCGTTTGCAGCCGATCTTGT 61.577 55.000 8.47 0.00 0.00 3.16
3094 7315 1.135315 CCGTTTGCAGCCGATCTTG 59.865 57.895 8.47 0.00 0.00 3.02
3095 7316 1.003839 TCCGTTTGCAGCCGATCTT 60.004 52.632 8.47 0.00 0.00 2.40
3096 7317 1.741770 GTCCGTTTGCAGCCGATCT 60.742 57.895 8.47 0.00 0.00 2.75
3097 7318 1.369091 ATGTCCGTTTGCAGCCGATC 61.369 55.000 8.47 2.72 0.00 3.69
3098 7319 0.107897 TATGTCCGTTTGCAGCCGAT 60.108 50.000 8.47 0.00 0.00 4.18
3099 7320 0.320858 TTATGTCCGTTTGCAGCCGA 60.321 50.000 8.47 0.00 0.00 5.54
3100 7321 0.179200 GTTATGTCCGTTTGCAGCCG 60.179 55.000 0.00 0.53 0.00 5.52
3101 7322 0.878416 TGTTATGTCCGTTTGCAGCC 59.122 50.000 0.00 0.00 0.00 4.85
3102 7323 2.919666 ATGTTATGTCCGTTTGCAGC 57.080 45.000 0.00 0.00 0.00 5.25
3103 7324 5.121611 TGAAGTATGTTATGTCCGTTTGCAG 59.878 40.000 0.00 0.00 0.00 4.41
3104 7325 4.998033 TGAAGTATGTTATGTCCGTTTGCA 59.002 37.500 0.00 0.00 0.00 4.08
3105 7326 5.321516 GTGAAGTATGTTATGTCCGTTTGC 58.678 41.667 0.00 0.00 0.00 3.68
3106 7327 5.410132 TGGTGAAGTATGTTATGTCCGTTTG 59.590 40.000 0.00 0.00 0.00 2.93
3107 7328 5.410439 GTGGTGAAGTATGTTATGTCCGTTT 59.590 40.000 0.00 0.00 0.00 3.60
3108 7329 4.933400 GTGGTGAAGTATGTTATGTCCGTT 59.067 41.667 0.00 0.00 0.00 4.44
3109 7330 4.020928 TGTGGTGAAGTATGTTATGTCCGT 60.021 41.667 0.00 0.00 0.00 4.69
3110 7331 4.500127 TGTGGTGAAGTATGTTATGTCCG 58.500 43.478 0.00 0.00 0.00 4.79
3111 7332 5.527582 GGATGTGGTGAAGTATGTTATGTCC 59.472 44.000 0.00 0.00 0.00 4.02
3112 7333 6.112734 TGGATGTGGTGAAGTATGTTATGTC 58.887 40.000 0.00 0.00 0.00 3.06
3113 7334 6.061022 TGGATGTGGTGAAGTATGTTATGT 57.939 37.500 0.00 0.00 0.00 2.29
3114 7335 7.389803 TTTGGATGTGGTGAAGTATGTTATG 57.610 36.000 0.00 0.00 0.00 1.90
3115 7336 8.415950 TTTTTGGATGTGGTGAAGTATGTTAT 57.584 30.769 0.00 0.00 0.00 1.89
3116 7337 7.825331 TTTTTGGATGTGGTGAAGTATGTTA 57.175 32.000 0.00 0.00 0.00 2.41
3117 7338 6.723298 TTTTTGGATGTGGTGAAGTATGTT 57.277 33.333 0.00 0.00 0.00 2.71
3137 7358 6.413018 GTCCGTGGACGAACTATAATTTTT 57.587 37.500 2.78 0.00 43.02 1.94
3147 7368 8.666088 GTTTATGAACTTGTCCGTGGACGAAC 62.666 46.154 14.00 7.46 39.00 3.95
3148 7369 6.752170 GTTTATGAACTTGTCCGTGGACGAA 61.752 44.000 14.00 8.64 39.00 3.85
3149 7370 5.323248 GTTTATGAACTTGTCCGTGGACGA 61.323 45.833 14.00 11.34 39.00 4.20
3150 7371 3.120786 GTTTATGAACTTGTCCGTGGACG 60.121 47.826 14.00 3.72 39.00 4.79
3151 7372 4.062991 AGTTTATGAACTTGTCCGTGGAC 58.937 43.478 12.17 12.17 43.48 4.02
3152 7373 4.345859 AGTTTATGAACTTGTCCGTGGA 57.654 40.909 0.00 0.00 43.48 4.02
3184 7405 8.971073 CCTCCTCCTCAATGTTTATATTGTTTT 58.029 33.333 0.00 0.00 38.77 2.43
3185 7406 7.561356 CCCTCCTCCTCAATGTTTATATTGTTT 59.439 37.037 0.00 0.00 38.77 2.83
3186 7407 7.062957 CCCTCCTCCTCAATGTTTATATTGTT 58.937 38.462 0.00 0.00 38.77 2.83
3187 7408 6.410853 CCCCTCCTCCTCAATGTTTATATTGT 60.411 42.308 0.00 0.00 38.77 2.71
3188 7409 6.006449 CCCCTCCTCCTCAATGTTTATATTG 58.994 44.000 0.00 0.00 38.97 1.90
3189 7410 5.075067 CCCCCTCCTCCTCAATGTTTATATT 59.925 44.000 0.00 0.00 0.00 1.28
3190 7411 4.603610 CCCCCTCCTCCTCAATGTTTATAT 59.396 45.833 0.00 0.00 0.00 0.86
3191 7412 3.980698 CCCCCTCCTCCTCAATGTTTATA 59.019 47.826 0.00 0.00 0.00 0.98
3192 7413 2.785857 CCCCCTCCTCCTCAATGTTTAT 59.214 50.000 0.00 0.00 0.00 1.40
3193 7414 2.205342 CCCCCTCCTCCTCAATGTTTA 58.795 52.381 0.00 0.00 0.00 2.01
3194 7415 1.002857 CCCCCTCCTCCTCAATGTTT 58.997 55.000 0.00 0.00 0.00 2.83
3195 7416 1.575447 GCCCCCTCCTCCTCAATGTT 61.575 60.000 0.00 0.00 0.00 2.71
3196 7417 2.003548 GCCCCCTCCTCCTCAATGT 61.004 63.158 0.00 0.00 0.00 2.71
3197 7418 2.761465 GGCCCCCTCCTCCTCAATG 61.761 68.421 0.00 0.00 0.00 2.82
3198 7419 2.368878 GGCCCCCTCCTCCTCAAT 60.369 66.667 0.00 0.00 0.00 2.57
3204 7425 3.561241 GATTCCGGCCCCCTCCTC 61.561 72.222 0.00 0.00 0.00 3.71
3205 7426 4.431524 TGATTCCGGCCCCCTCCT 62.432 66.667 0.00 0.00 0.00 3.69
3206 7427 4.191015 GTGATTCCGGCCCCCTCC 62.191 72.222 0.00 0.00 0.00 4.30
3207 7428 4.191015 GGTGATTCCGGCCCCCTC 62.191 72.222 0.00 0.00 0.00 4.30
3209 7430 4.815108 GTGGTGATTCCGGCCCCC 62.815 72.222 0.00 0.00 39.52 5.40
3210 7431 3.282374 AAGTGGTGATTCCGGCCCC 62.282 63.158 0.00 0.00 39.52 5.80
3211 7432 1.749258 GAAGTGGTGATTCCGGCCC 60.749 63.158 0.00 0.00 39.52 5.80
3212 7433 1.749258 GGAAGTGGTGATTCCGGCC 60.749 63.158 0.00 0.00 37.10 6.13
3213 7434 3.905249 GGAAGTGGTGATTCCGGC 58.095 61.111 0.00 0.00 37.10 6.13
3216 7437 0.250513 AGCGAGGAAGTGGTGATTCC 59.749 55.000 0.00 0.00 45.56 3.01
3217 7438 1.363744 CAGCGAGGAAGTGGTGATTC 58.636 55.000 0.00 0.00 35.69 2.52
3218 7439 0.036010 CCAGCGAGGAAGTGGTGATT 60.036 55.000 0.00 0.00 41.22 2.57
3219 7440 1.599047 CCAGCGAGGAAGTGGTGAT 59.401 57.895 0.00 0.00 41.22 3.06
3220 7441 2.583441 CCCAGCGAGGAAGTGGTGA 61.583 63.158 0.00 0.00 41.22 4.02
3221 7442 2.046892 CCCAGCGAGGAAGTGGTG 60.047 66.667 0.00 0.00 41.22 4.17
3222 7443 4.021925 GCCCAGCGAGGAAGTGGT 62.022 66.667 0.00 0.00 41.22 4.16
3223 7444 4.785453 GGCCCAGCGAGGAAGTGG 62.785 72.222 0.00 0.00 41.22 4.00
3224 7445 2.754664 AAAGGCCCAGCGAGGAAGTG 62.755 60.000 0.00 0.00 41.22 3.16
3225 7446 2.529744 AAAGGCCCAGCGAGGAAGT 61.530 57.895 0.00 0.00 41.22 3.01
3226 7447 2.042831 CAAAGGCCCAGCGAGGAAG 61.043 63.158 0.00 0.00 41.22 3.46
3227 7448 2.034066 CAAAGGCCCAGCGAGGAA 59.966 61.111 0.00 0.00 41.22 3.36
3228 7449 4.033776 CCAAAGGCCCAGCGAGGA 62.034 66.667 0.00 0.00 41.22 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.