Multiple sequence alignment - TraesCS2D01G313400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G313400 chr2D 100.000 5579 0 0 1 5579 403208523 403214101 0.000000e+00 10303.0
1 TraesCS2D01G313400 chr2D 100.000 113 0 0 5720 5832 403214242 403214354 5.920000e-50 209.0
2 TraesCS2D01G313400 chr2D 87.429 175 21 1 1 175 647631349 647631176 3.560000e-47 200.0
3 TraesCS2D01G313400 chr2B 93.555 5198 147 79 444 5579 477327734 477332805 0.000000e+00 7570.0
4 TraesCS2D01G313400 chr2B 85.256 156 4 3 258 407 477327540 477327682 6.090000e-30 143.0
5 TraesCS2D01G313400 chr2A 95.264 4603 143 32 978 5572 540451927 540456462 0.000000e+00 7223.0
6 TraesCS2D01G313400 chr2A 88.504 722 35 20 253 937 540450891 540451601 0.000000e+00 830.0
7 TraesCS2D01G313400 chr2A 89.024 164 17 1 1 164 772767578 772767740 9.910000e-48 202.0
8 TraesCS2D01G313400 chr4D 76.160 776 138 38 4084 4828 464537996 464538755 1.190000e-96 364.0
9 TraesCS2D01G313400 chr4B 75.711 774 145 37 4084 4828 580855519 580856278 1.200000e-91 348.0
10 TraesCS2D01G313400 chr3B 87.879 165 20 0 2 166 739958871 739959035 1.660000e-45 195.0
11 TraesCS2D01G313400 chr5D 86.145 166 21 2 1 166 363845911 363846074 1.670000e-40 178.0
12 TraesCS2D01G313400 chr5D 76.339 224 34 15 3415 3627 7502743 7502528 1.030000e-17 102.0
13 TraesCS2D01G313400 chr1D 85.714 161 23 0 3 163 177666883 177667043 2.790000e-38 171.0
14 TraesCS2D01G313400 chr7B 83.735 166 25 2 1 165 144974604 144974440 7.820000e-34 156.0
15 TraesCS2D01G313400 chr5A 76.339 224 34 15 3415 3627 4957786 4957571 1.030000e-17 102.0
16 TraesCS2D01G313400 chr5A 88.462 52 3 2 5456 5506 342418335 342418384 6.310000e-05 60.2
17 TraesCS2D01G313400 chr6D 84.466 103 15 1 63 165 28239112 28239011 3.720000e-17 100.0
18 TraesCS2D01G313400 chr6D 89.286 56 6 0 110 165 349995796 349995851 2.920000e-08 71.3
19 TraesCS2D01G313400 chr1B 76.398 161 34 3 6 165 603496673 603496830 3.750000e-12 84.2
20 TraesCS2D01G313400 chr6B 85.000 60 8 1 110 168 530125593 530125534 6.310000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G313400 chr2D 403208523 403214354 5831 False 5256.0 10303 100.0000 1 5832 2 chr2D.!!$F1 5831
1 TraesCS2D01G313400 chr2B 477327540 477332805 5265 False 3856.5 7570 89.4055 258 5579 2 chr2B.!!$F1 5321
2 TraesCS2D01G313400 chr2A 540450891 540456462 5571 False 4026.5 7223 91.8840 253 5572 2 chr2A.!!$F2 5319
3 TraesCS2D01G313400 chr4D 464537996 464538755 759 False 364.0 364 76.1600 4084 4828 1 chr4D.!!$F1 744
4 TraesCS2D01G313400 chr4B 580855519 580856278 759 False 348.0 348 75.7110 4084 4828 1 chr4B.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.109086 AGAATGCACGTGAGAGACCG 60.109 55.000 22.23 0.00 0.00 4.79 F
224 225 0.109086 AATGCACGTGAGAGACCGAG 60.109 55.000 22.23 0.00 0.00 4.63 F
233 234 0.241481 GAGAGACCGAGTCGTGCTTT 59.759 55.000 12.31 3.28 37.67 3.51 F
433 473 0.394352 GATGATGAAACAGGGGCGGT 60.394 55.000 0.00 0.00 0.00 5.68 F
763 845 0.395862 TACCCTTCGCTCTCCTCCTG 60.396 60.000 0.00 0.00 0.00 3.86 F
945 1039 0.527817 ATTTCGTGTCCGGCGATCTC 60.528 55.000 9.30 0.73 38.21 2.75 F
1784 2186 1.077858 GAGGCCCCAAGAAGAGCAG 60.078 63.158 0.00 0.00 0.00 4.24 F
3062 3464 1.094785 CATCAACCCCGTCAACATCC 58.905 55.000 0.00 0.00 0.00 3.51 F
3882 4284 2.278013 GACGGCGTGATCGAGTCC 60.278 66.667 21.19 0.00 38.90 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 2113 0.248094 CACTCAGCTCAATGCATGCG 60.248 55.000 14.09 0.00 45.94 4.73 R
1784 2186 2.266055 CCACCAGCCTCGACTTCC 59.734 66.667 0.00 0.00 0.00 3.46 R
2140 2542 2.803479 GTAGTCGTAGGCCCGGTG 59.197 66.667 0.00 0.00 0.00 4.94 R
2399 2801 0.640768 GACGACACTGTTGCTATCGC 59.359 55.000 0.00 0.00 36.26 4.58 R
2772 3174 1.739562 CTGGAAGAGCTGGTCGTGC 60.740 63.158 7.29 7.29 34.07 5.34 R
2878 3280 0.179119 GACGGATGATTCGGTTCGGT 60.179 55.000 0.00 0.00 35.74 4.69 R
3204 3606 0.611714 GGCGGGAACACCTAGAAAGA 59.388 55.000 0.00 0.00 36.97 2.52 R
3873 4275 1.141234 GGTGAACCCGGACTCGATC 59.859 63.158 0.73 0.00 39.00 3.69 R
5752 6184 0.036732 TGGATGGTCTGCAGTTGGTC 59.963 55.000 14.67 8.31 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.706373 CCGTGTGCTGGCTAGGGT 61.706 66.667 0.00 0.00 0.00 4.34
22 23 2.434884 CGTGTGCTGGCTAGGGTG 60.435 66.667 0.00 0.00 0.00 4.61
23 24 2.747855 GTGTGCTGGCTAGGGTGC 60.748 66.667 0.00 0.00 0.00 5.01
33 34 2.938956 GCTAGGGTGCCATGTATCTT 57.061 50.000 0.00 0.00 0.00 2.40
34 35 3.214696 GCTAGGGTGCCATGTATCTTT 57.785 47.619 0.00 0.00 0.00 2.52
35 36 3.142174 GCTAGGGTGCCATGTATCTTTC 58.858 50.000 0.00 0.00 0.00 2.62
36 37 2.736670 AGGGTGCCATGTATCTTTCC 57.263 50.000 0.00 0.00 0.00 3.13
37 38 2.208872 AGGGTGCCATGTATCTTTCCT 58.791 47.619 0.00 0.00 0.00 3.36
38 39 2.582636 AGGGTGCCATGTATCTTTCCTT 59.417 45.455 0.00 0.00 0.00 3.36
39 40 2.952310 GGGTGCCATGTATCTTTCCTTC 59.048 50.000 0.00 0.00 0.00 3.46
40 41 3.372025 GGGTGCCATGTATCTTTCCTTCT 60.372 47.826 0.00 0.00 0.00 2.85
41 42 4.273318 GGTGCCATGTATCTTTCCTTCTT 58.727 43.478 0.00 0.00 0.00 2.52
42 43 4.706962 GGTGCCATGTATCTTTCCTTCTTT 59.293 41.667 0.00 0.00 0.00 2.52
43 44 5.185828 GGTGCCATGTATCTTTCCTTCTTTT 59.814 40.000 0.00 0.00 0.00 2.27
44 45 6.377146 GGTGCCATGTATCTTTCCTTCTTTTA 59.623 38.462 0.00 0.00 0.00 1.52
45 46 7.251281 GTGCCATGTATCTTTCCTTCTTTTAC 58.749 38.462 0.00 0.00 0.00 2.01
46 47 7.121315 GTGCCATGTATCTTTCCTTCTTTTACT 59.879 37.037 0.00 0.00 0.00 2.24
47 48 7.669722 TGCCATGTATCTTTCCTTCTTTTACTT 59.330 33.333 0.00 0.00 0.00 2.24
48 49 8.184848 GCCATGTATCTTTCCTTCTTTTACTTC 58.815 37.037 0.00 0.00 0.00 3.01
49 50 8.391106 CCATGTATCTTTCCTTCTTTTACTTCG 58.609 37.037 0.00 0.00 0.00 3.79
50 51 7.900782 TGTATCTTTCCTTCTTTTACTTCGG 57.099 36.000 0.00 0.00 0.00 4.30
51 52 7.673180 TGTATCTTTCCTTCTTTTACTTCGGA 58.327 34.615 0.00 0.00 0.00 4.55
52 53 8.319146 TGTATCTTTCCTTCTTTTACTTCGGAT 58.681 33.333 0.00 0.00 0.00 4.18
53 54 7.617041 ATCTTTCCTTCTTTTACTTCGGATG 57.383 36.000 0.00 0.00 0.00 3.51
54 55 5.938125 TCTTTCCTTCTTTTACTTCGGATGG 59.062 40.000 0.00 0.00 0.00 3.51
55 56 4.216411 TCCTTCTTTTACTTCGGATGGG 57.784 45.455 0.00 0.00 0.00 4.00
56 57 3.585732 TCCTTCTTTTACTTCGGATGGGT 59.414 43.478 0.00 0.00 0.00 4.51
57 58 3.939592 CCTTCTTTTACTTCGGATGGGTC 59.060 47.826 0.00 0.00 0.00 4.46
58 59 3.622166 TCTTTTACTTCGGATGGGTCC 57.378 47.619 0.00 0.00 41.40 4.46
59 60 2.907696 TCTTTTACTTCGGATGGGTCCA 59.092 45.455 0.00 0.00 45.37 4.02
60 61 3.521937 TCTTTTACTTCGGATGGGTCCAT 59.478 43.478 1.54 1.54 45.37 3.41
61 62 3.275617 TTTACTTCGGATGGGTCCATG 57.724 47.619 7.29 0.00 45.37 3.66
62 63 1.874129 TACTTCGGATGGGTCCATGT 58.126 50.000 7.29 1.58 45.37 3.21
63 64 0.991920 ACTTCGGATGGGTCCATGTT 59.008 50.000 7.29 0.00 45.37 2.71
64 65 1.354368 ACTTCGGATGGGTCCATGTTT 59.646 47.619 7.29 0.00 45.37 2.83
65 66 1.745087 CTTCGGATGGGTCCATGTTTG 59.255 52.381 7.29 0.00 45.37 2.93
66 67 0.695924 TCGGATGGGTCCATGTTTGT 59.304 50.000 7.29 0.00 45.37 2.83
67 68 0.810648 CGGATGGGTCCATGTTTGTG 59.189 55.000 7.29 0.00 45.37 3.33
68 69 1.185315 GGATGGGTCCATGTTTGTGG 58.815 55.000 7.29 0.00 44.42 4.17
69 70 1.549950 GGATGGGTCCATGTTTGTGGT 60.550 52.381 7.29 0.00 44.42 4.16
70 71 2.247358 GATGGGTCCATGTTTGTGGTT 58.753 47.619 7.29 0.00 40.27 3.67
71 72 1.698506 TGGGTCCATGTTTGTGGTTC 58.301 50.000 0.00 0.00 40.27 3.62
72 73 1.063642 TGGGTCCATGTTTGTGGTTCA 60.064 47.619 0.00 0.00 40.27 3.18
73 74 2.247358 GGGTCCATGTTTGTGGTTCAT 58.753 47.619 0.00 0.00 40.27 2.57
74 75 2.231235 GGGTCCATGTTTGTGGTTCATC 59.769 50.000 0.00 0.00 40.27 2.92
75 76 2.231235 GGTCCATGTTTGTGGTTCATCC 59.769 50.000 0.00 0.00 40.27 3.51
76 77 2.231235 GTCCATGTTTGTGGTTCATCCC 59.769 50.000 0.00 0.00 40.27 3.85
77 78 1.202114 CCATGTTTGTGGTTCATCCCG 59.798 52.381 0.00 0.00 34.46 5.14
78 79 1.885887 CATGTTTGTGGTTCATCCCGT 59.114 47.619 0.00 0.00 34.77 5.28
79 80 2.060050 TGTTTGTGGTTCATCCCGTT 57.940 45.000 0.00 0.00 34.77 4.44
80 81 2.379972 TGTTTGTGGTTCATCCCGTTT 58.620 42.857 0.00 0.00 34.77 3.60
81 82 3.552875 TGTTTGTGGTTCATCCCGTTTA 58.447 40.909 0.00 0.00 34.77 2.01
82 83 4.145807 TGTTTGTGGTTCATCCCGTTTAT 58.854 39.130 0.00 0.00 34.77 1.40
83 84 4.585162 TGTTTGTGGTTCATCCCGTTTATT 59.415 37.500 0.00 0.00 34.77 1.40
84 85 5.069251 TGTTTGTGGTTCATCCCGTTTATTT 59.931 36.000 0.00 0.00 34.77 1.40
85 86 4.775058 TGTGGTTCATCCCGTTTATTTG 57.225 40.909 0.00 0.00 34.77 2.32
86 87 4.145807 TGTGGTTCATCCCGTTTATTTGT 58.854 39.130 0.00 0.00 34.77 2.83
87 88 4.216687 TGTGGTTCATCCCGTTTATTTGTC 59.783 41.667 0.00 0.00 34.77 3.18
88 89 4.457949 GTGGTTCATCCCGTTTATTTGTCT 59.542 41.667 0.00 0.00 34.77 3.41
89 90 4.457603 TGGTTCATCCCGTTTATTTGTCTG 59.542 41.667 0.00 0.00 34.77 3.51
90 91 4.142469 GGTTCATCCCGTTTATTTGTCTGG 60.142 45.833 0.00 0.00 0.00 3.86
91 92 4.295141 TCATCCCGTTTATTTGTCTGGT 57.705 40.909 0.00 0.00 0.00 4.00
92 93 4.658063 TCATCCCGTTTATTTGTCTGGTT 58.342 39.130 0.00 0.00 0.00 3.67
93 94 4.457603 TCATCCCGTTTATTTGTCTGGTTG 59.542 41.667 0.00 0.00 0.00 3.77
94 95 3.150767 TCCCGTTTATTTGTCTGGTTGG 58.849 45.455 0.00 0.00 0.00 3.77
95 96 2.888414 CCCGTTTATTTGTCTGGTTGGT 59.112 45.455 0.00 0.00 0.00 3.67
96 97 3.319689 CCCGTTTATTTGTCTGGTTGGTT 59.680 43.478 0.00 0.00 0.00 3.67
97 98 4.542735 CCGTTTATTTGTCTGGTTGGTTC 58.457 43.478 0.00 0.00 0.00 3.62
98 99 4.277423 CCGTTTATTTGTCTGGTTGGTTCT 59.723 41.667 0.00 0.00 0.00 3.01
99 100 5.212194 CGTTTATTTGTCTGGTTGGTTCTG 58.788 41.667 0.00 0.00 0.00 3.02
100 101 5.220970 CGTTTATTTGTCTGGTTGGTTCTGT 60.221 40.000 0.00 0.00 0.00 3.41
101 102 5.766150 TTATTTGTCTGGTTGGTTCTGTG 57.234 39.130 0.00 0.00 0.00 3.66
102 103 2.799126 TTGTCTGGTTGGTTCTGTGT 57.201 45.000 0.00 0.00 0.00 3.72
103 104 2.036958 TGTCTGGTTGGTTCTGTGTG 57.963 50.000 0.00 0.00 0.00 3.82
104 105 1.280710 TGTCTGGTTGGTTCTGTGTGT 59.719 47.619 0.00 0.00 0.00 3.72
105 106 2.290641 TGTCTGGTTGGTTCTGTGTGTT 60.291 45.455 0.00 0.00 0.00 3.32
106 107 2.097466 GTCTGGTTGGTTCTGTGTGTTG 59.903 50.000 0.00 0.00 0.00 3.33
107 108 0.814457 TGGTTGGTTCTGTGTGTTGC 59.186 50.000 0.00 0.00 0.00 4.17
108 109 1.102978 GGTTGGTTCTGTGTGTTGCT 58.897 50.000 0.00 0.00 0.00 3.91
109 110 2.294074 GGTTGGTTCTGTGTGTTGCTA 58.706 47.619 0.00 0.00 0.00 3.49
110 111 2.032924 GGTTGGTTCTGTGTGTTGCTAC 59.967 50.000 0.00 0.00 0.00 3.58
111 112 2.943033 GTTGGTTCTGTGTGTTGCTACT 59.057 45.455 0.00 0.00 0.00 2.57
112 113 2.833794 TGGTTCTGTGTGTTGCTACTC 58.166 47.619 0.00 0.00 0.00 2.59
113 114 2.434336 TGGTTCTGTGTGTTGCTACTCT 59.566 45.455 0.00 0.00 0.00 3.24
114 115 2.802816 GGTTCTGTGTGTTGCTACTCTG 59.197 50.000 0.00 0.00 0.00 3.35
115 116 2.154854 TCTGTGTGTTGCTACTCTGC 57.845 50.000 0.00 0.00 0.00 4.26
116 117 1.151668 CTGTGTGTTGCTACTCTGCC 58.848 55.000 0.00 0.00 0.00 4.85
117 118 0.758734 TGTGTGTTGCTACTCTGCCT 59.241 50.000 0.00 0.00 0.00 4.75
118 119 1.140852 TGTGTGTTGCTACTCTGCCTT 59.859 47.619 0.00 0.00 0.00 4.35
119 120 2.367241 TGTGTGTTGCTACTCTGCCTTA 59.633 45.455 0.00 0.00 0.00 2.69
120 121 3.007940 TGTGTGTTGCTACTCTGCCTTAT 59.992 43.478 0.00 0.00 0.00 1.73
121 122 3.372206 GTGTGTTGCTACTCTGCCTTATG 59.628 47.826 0.00 0.00 0.00 1.90
122 123 3.260632 TGTGTTGCTACTCTGCCTTATGA 59.739 43.478 0.00 0.00 0.00 2.15
123 124 3.619038 GTGTTGCTACTCTGCCTTATGAC 59.381 47.826 0.00 0.00 0.00 3.06
124 125 3.515502 TGTTGCTACTCTGCCTTATGACT 59.484 43.478 0.00 0.00 0.00 3.41
125 126 4.020218 TGTTGCTACTCTGCCTTATGACTT 60.020 41.667 0.00 0.00 0.00 3.01
126 127 4.826274 TGCTACTCTGCCTTATGACTTT 57.174 40.909 0.00 0.00 0.00 2.66
127 128 5.932619 TGCTACTCTGCCTTATGACTTTA 57.067 39.130 0.00 0.00 0.00 1.85
128 129 6.485830 TGCTACTCTGCCTTATGACTTTAT 57.514 37.500 0.00 0.00 0.00 1.40
129 130 6.516718 TGCTACTCTGCCTTATGACTTTATC 58.483 40.000 0.00 0.00 0.00 1.75
130 131 6.325028 TGCTACTCTGCCTTATGACTTTATCT 59.675 38.462 0.00 0.00 0.00 1.98
131 132 7.505923 TGCTACTCTGCCTTATGACTTTATCTA 59.494 37.037 0.00 0.00 0.00 1.98
132 133 8.527810 GCTACTCTGCCTTATGACTTTATCTAT 58.472 37.037 0.00 0.00 0.00 1.98
144 145 4.905412 CTTTATCTATAAAGTCGGGCGC 57.095 45.455 12.40 0.00 42.53 6.53
145 146 4.304110 CTTTATCTATAAAGTCGGGCGCA 58.696 43.478 10.83 0.00 42.53 6.09
146 147 4.530710 TTATCTATAAAGTCGGGCGCAT 57.469 40.909 10.83 0.00 0.00 4.73
147 148 2.148916 TCTATAAAGTCGGGCGCATG 57.851 50.000 10.83 0.00 0.00 4.06
148 149 0.512952 CTATAAAGTCGGGCGCATGC 59.487 55.000 10.83 7.91 41.71 4.06
149 150 0.179070 TATAAAGTCGGGCGCATGCA 60.179 50.000 19.57 0.00 45.35 3.96
150 151 0.819259 ATAAAGTCGGGCGCATGCAT 60.819 50.000 19.57 0.00 45.35 3.96
151 152 1.029408 TAAAGTCGGGCGCATGCATT 61.029 50.000 19.57 0.00 45.35 3.56
152 153 1.876497 AAAGTCGGGCGCATGCATTT 61.876 50.000 19.57 1.10 45.35 2.32
153 154 1.876497 AAGTCGGGCGCATGCATTTT 61.876 50.000 19.57 0.00 45.35 1.82
154 155 1.873572 GTCGGGCGCATGCATTTTC 60.874 57.895 19.57 1.41 45.35 2.29
155 156 2.045708 TCGGGCGCATGCATTTTCT 61.046 52.632 19.57 0.00 45.35 2.52
156 157 1.153784 CGGGCGCATGCATTTTCTT 60.154 52.632 19.57 0.00 45.35 2.52
157 158 0.737019 CGGGCGCATGCATTTTCTTT 60.737 50.000 19.57 0.00 45.35 2.52
158 159 1.468908 CGGGCGCATGCATTTTCTTTA 60.469 47.619 19.57 0.00 45.35 1.85
159 160 2.615869 GGGCGCATGCATTTTCTTTAA 58.384 42.857 19.57 0.00 45.35 1.52
160 161 2.999355 GGGCGCATGCATTTTCTTTAAA 59.001 40.909 19.57 0.00 45.35 1.52
161 162 3.434984 GGGCGCATGCATTTTCTTTAAAA 59.565 39.130 19.57 0.00 45.35 1.52
162 163 4.083590 GGGCGCATGCATTTTCTTTAAAAA 60.084 37.500 19.57 0.00 45.35 1.94
184 185 6.575162 AAAAAGTATGAGTGGTTGGATCAC 57.425 37.500 0.00 0.00 35.51 3.06
185 186 3.526931 AGTATGAGTGGTTGGATCACG 57.473 47.619 0.00 0.00 39.86 4.35
186 187 2.832129 AGTATGAGTGGTTGGATCACGT 59.168 45.455 0.00 0.00 39.86 4.49
187 188 2.386661 ATGAGTGGTTGGATCACGTC 57.613 50.000 0.00 0.00 39.86 4.34
202 203 5.684626 GGATCACGTCCACTAAAGTATTACG 59.315 44.000 0.00 8.60 46.96 3.18
203 204 5.878332 TCACGTCCACTAAAGTATTACGA 57.122 39.130 14.26 0.00 33.62 3.43
204 205 5.872635 TCACGTCCACTAAAGTATTACGAG 58.127 41.667 14.26 8.92 33.62 4.18
205 206 5.643348 TCACGTCCACTAAAGTATTACGAGA 59.357 40.000 14.26 10.49 33.62 4.04
206 207 6.149308 TCACGTCCACTAAAGTATTACGAGAA 59.851 38.462 14.26 0.00 33.62 2.87
207 208 6.971184 CACGTCCACTAAAGTATTACGAGAAT 59.029 38.462 14.26 0.00 33.62 2.40
208 209 6.971184 ACGTCCACTAAAGTATTACGAGAATG 59.029 38.462 14.26 0.00 33.62 2.67
209 210 6.074994 CGTCCACTAAAGTATTACGAGAATGC 60.075 42.308 0.00 0.00 32.15 3.56
210 211 6.755141 GTCCACTAAAGTATTACGAGAATGCA 59.245 38.462 0.00 0.00 0.00 3.96
211 212 6.755141 TCCACTAAAGTATTACGAGAATGCAC 59.245 38.462 0.00 0.00 0.00 4.57
212 213 6.291637 CCACTAAAGTATTACGAGAATGCACG 60.292 42.308 0.00 0.00 0.00 5.34
213 214 6.252869 CACTAAAGTATTACGAGAATGCACGT 59.747 38.462 0.73 0.73 43.55 4.49
214 215 5.450376 AAAGTATTACGAGAATGCACGTG 57.550 39.130 12.28 12.28 41.34 4.49
215 216 4.365899 AGTATTACGAGAATGCACGTGA 57.634 40.909 22.23 4.80 41.34 4.35
216 217 4.352039 AGTATTACGAGAATGCACGTGAG 58.648 43.478 22.23 3.13 41.34 3.51
217 218 3.503827 ATTACGAGAATGCACGTGAGA 57.496 42.857 22.23 4.72 41.34 3.27
218 219 2.544480 TACGAGAATGCACGTGAGAG 57.456 50.000 22.23 4.95 41.34 3.20
219 220 0.881796 ACGAGAATGCACGTGAGAGA 59.118 50.000 22.23 0.00 39.80 3.10
220 221 1.263776 CGAGAATGCACGTGAGAGAC 58.736 55.000 22.23 0.69 0.00 3.36
221 222 1.634702 GAGAATGCACGTGAGAGACC 58.365 55.000 22.23 0.00 0.00 3.85
222 223 0.109086 AGAATGCACGTGAGAGACCG 60.109 55.000 22.23 0.00 0.00 4.79
223 224 0.109272 GAATGCACGTGAGAGACCGA 60.109 55.000 22.23 0.00 0.00 4.69
224 225 0.109086 AATGCACGTGAGAGACCGAG 60.109 55.000 22.23 0.00 0.00 4.63
225 226 1.244697 ATGCACGTGAGAGACCGAGT 61.245 55.000 22.23 0.00 0.00 4.18
226 227 1.154188 GCACGTGAGAGACCGAGTC 60.154 63.158 22.23 0.00 0.00 3.36
227 228 1.132844 CACGTGAGAGACCGAGTCG 59.867 63.158 10.90 5.29 37.67 4.18
228 229 1.301558 ACGTGAGAGACCGAGTCGT 60.302 57.895 12.31 0.00 37.67 4.34
229 230 1.132844 CGTGAGAGACCGAGTCGTG 59.867 63.158 12.31 5.64 37.67 4.35
230 231 1.154188 GTGAGAGACCGAGTCGTGC 60.154 63.158 12.31 2.67 37.67 5.34
231 232 1.302591 TGAGAGACCGAGTCGTGCT 60.303 57.895 12.31 7.94 37.67 4.40
232 233 0.889638 TGAGAGACCGAGTCGTGCTT 60.890 55.000 12.31 0.00 37.67 3.91
233 234 0.241481 GAGAGACCGAGTCGTGCTTT 59.759 55.000 12.31 3.28 37.67 3.51
234 235 0.674534 AGAGACCGAGTCGTGCTTTT 59.325 50.000 12.31 0.00 37.67 2.27
235 236 1.068741 AGAGACCGAGTCGTGCTTTTT 59.931 47.619 12.31 0.00 37.67 1.94
312 319 5.046591 CCTCCAATGTTCTCTGTACTACCAA 60.047 44.000 0.00 0.00 0.00 3.67
313 320 6.428083 TCCAATGTTCTCTGTACTACCAAA 57.572 37.500 0.00 0.00 0.00 3.28
385 393 1.644786 GGGCTCACCGGTTTTCATCG 61.645 60.000 2.97 0.00 36.48 3.84
407 447 2.884639 AGATGCACCTACAAACACCAAC 59.115 45.455 0.00 0.00 0.00 3.77
419 459 6.385649 ACAAACACCAACTAAAACGATGAT 57.614 33.333 0.00 0.00 0.00 2.45
420 460 6.205784 ACAAACACCAACTAAAACGATGATG 58.794 36.000 0.00 0.00 0.00 3.07
423 463 6.627395 ACACCAACTAAAACGATGATGAAA 57.373 33.333 0.00 0.00 0.00 2.69
424 464 6.435428 ACACCAACTAAAACGATGATGAAAC 58.565 36.000 0.00 0.00 0.00 2.78
425 465 6.038825 ACACCAACTAAAACGATGATGAAACA 59.961 34.615 0.00 0.00 0.00 2.83
426 466 6.578545 CACCAACTAAAACGATGATGAAACAG 59.421 38.462 0.00 0.00 0.00 3.16
429 469 4.700213 ACTAAAACGATGATGAAACAGGGG 59.300 41.667 0.00 0.00 0.00 4.79
430 470 1.463674 AACGATGATGAAACAGGGGC 58.536 50.000 0.00 0.00 0.00 5.80
431 471 0.744414 ACGATGATGAAACAGGGGCG 60.744 55.000 0.00 0.00 0.00 6.13
432 472 1.439353 CGATGATGAAACAGGGGCGG 61.439 60.000 0.00 0.00 0.00 6.13
433 473 0.394352 GATGATGAAACAGGGGCGGT 60.394 55.000 0.00 0.00 0.00 5.68
434 474 0.680921 ATGATGAAACAGGGGCGGTG 60.681 55.000 0.00 0.00 0.00 4.94
435 475 2.035626 ATGAAACAGGGGCGGTGG 59.964 61.111 0.00 0.00 0.00 4.61
436 476 3.583882 ATGAAACAGGGGCGGTGGG 62.584 63.158 0.00 0.00 0.00 4.61
437 477 4.280019 GAAACAGGGGCGGTGGGT 62.280 66.667 0.00 0.00 0.00 4.51
438 478 4.280019 AAACAGGGGCGGTGGGTC 62.280 66.667 0.00 0.00 0.00 4.46
491 544 1.485124 CCCCTGGGTTTTATTGAGGC 58.515 55.000 12.71 0.00 0.00 4.70
580 646 2.125912 CCTCACCTGCGTCGAAGG 60.126 66.667 18.41 18.41 40.93 3.46
630 698 2.546778 CGCCCTTTTCTATTCAGCGTA 58.453 47.619 0.00 0.00 37.47 4.42
631 699 3.131396 CGCCCTTTTCTATTCAGCGTAT 58.869 45.455 0.00 0.00 37.47 3.06
632 700 4.304110 CGCCCTTTTCTATTCAGCGTATA 58.696 43.478 0.00 0.00 37.47 1.47
633 701 4.386049 CGCCCTTTTCTATTCAGCGTATAG 59.614 45.833 0.00 0.00 37.47 1.31
743 825 1.304962 TCTGCCGCTCTGGGTTAGA 60.305 57.895 0.00 0.00 38.63 2.10
762 844 0.558712 ATACCCTTCGCTCTCCTCCT 59.441 55.000 0.00 0.00 0.00 3.69
763 845 0.395862 TACCCTTCGCTCTCCTCCTG 60.396 60.000 0.00 0.00 0.00 3.86
771 853 1.994507 CTCTCCTCCTGCCCAAGCT 60.995 63.158 0.00 0.00 40.80 3.74
841 935 1.469595 CGAGAGAGAAAGGCAGCAGAG 60.470 57.143 0.00 0.00 0.00 3.35
870 964 4.699522 GGCTGGTGTCCGGTCCAC 62.700 72.222 15.72 15.72 31.34 4.02
889 983 1.272490 ACGATCCAGAGCGAGAAACAA 59.728 47.619 12.80 0.00 43.75 2.83
891 985 2.736721 CGATCCAGAGCGAGAAACAAAA 59.263 45.455 0.00 0.00 43.75 2.44
892 986 3.423645 CGATCCAGAGCGAGAAACAAAAC 60.424 47.826 0.00 0.00 43.75 2.43
893 987 2.912771 TCCAGAGCGAGAAACAAAACA 58.087 42.857 0.00 0.00 0.00 2.83
894 988 3.476552 TCCAGAGCGAGAAACAAAACAT 58.523 40.909 0.00 0.00 0.00 2.71
895 989 4.637276 TCCAGAGCGAGAAACAAAACATA 58.363 39.130 0.00 0.00 0.00 2.29
945 1039 0.527817 ATTTCGTGTCCGGCGATCTC 60.528 55.000 9.30 0.73 38.21 2.75
952 1046 1.084370 GTCCGGCGATCTCAACCTTG 61.084 60.000 9.30 0.00 0.00 3.61
953 1047 1.815421 CCGGCGATCTCAACCTTGG 60.815 63.158 9.30 0.00 0.00 3.61
994 1374 3.118956 AGAGCTTCTTTCTACGGTCATGG 60.119 47.826 0.00 0.00 0.00 3.66
1414 1806 1.586154 CTTCCCTGCCGCGTTTGAAT 61.586 55.000 4.92 0.00 0.00 2.57
1416 1808 1.154035 CCCTGCCGCGTTTGAATTC 60.154 57.895 4.92 0.00 0.00 2.17
1417 1809 1.154035 CCTGCCGCGTTTGAATTCC 60.154 57.895 4.92 0.00 0.00 3.01
1418 1810 1.511887 CTGCCGCGTTTGAATTCCG 60.512 57.895 4.92 0.40 0.00 4.30
1419 1811 2.874315 GCCGCGTTTGAATTCCGC 60.874 61.111 15.03 15.03 43.74 5.54
1420 1812 2.202427 CCGCGTTTGAATTCCGCC 60.202 61.111 17.95 5.06 44.29 6.13
1590 1986 3.267860 CATGGAAGCCGAGCGAGC 61.268 66.667 0.00 0.00 0.00 5.03
1591 1987 4.880537 ATGGAAGCCGAGCGAGCG 62.881 66.667 0.00 0.00 34.64 5.03
1617 2018 4.770874 CGGCCACCAACCTACCCG 62.771 72.222 2.24 0.00 0.00 5.28
1632 2033 2.005971 ACCCGTCGCTCTGTTTATTC 57.994 50.000 0.00 0.00 0.00 1.75
1712 2113 2.547211 CAGAGCGAATCATTGGATGGAC 59.453 50.000 0.00 0.00 32.92 4.02
1784 2186 1.077858 GAGGCCCCAAGAAGAGCAG 60.078 63.158 0.00 0.00 0.00 4.24
2399 2801 6.722590 TCCATCCATCCATCCAATAAATTCTG 59.277 38.462 0.00 0.00 0.00 3.02
2878 3280 4.225942 ACATCATCAAGAGTAAGAAGCCCA 59.774 41.667 0.00 0.00 0.00 5.36
2881 3283 1.275291 TCAAGAGTAAGAAGCCCACCG 59.725 52.381 0.00 0.00 0.00 4.94
2882 3284 1.275291 CAAGAGTAAGAAGCCCACCGA 59.725 52.381 0.00 0.00 0.00 4.69
2891 3293 2.046700 GCCCACCGAACCGAATCA 60.047 61.111 0.00 0.00 0.00 2.57
3062 3464 1.094785 CATCAACCCCGTCAACATCC 58.905 55.000 0.00 0.00 0.00 3.51
3882 4284 2.278013 GACGGCGTGATCGAGTCC 60.278 66.667 21.19 0.00 38.90 3.85
4004 4406 5.546621 AGGTACTTACAAGCTTCACTTCA 57.453 39.130 0.00 0.00 31.02 3.02
4060 4462 3.009723 GGAAGGCGACTGATTCATTTGA 58.990 45.455 0.00 0.00 42.68 2.69
4216 4618 3.858225 GTGGCGGCCTACTACCCC 61.858 72.222 21.46 0.00 0.00 4.95
4255 4657 1.235281 ACGACTACGAGCTGCAGTCA 61.235 55.000 16.64 0.00 42.66 3.41
4889 5306 3.386768 TCAGCCTCGATATACTTTGGC 57.613 47.619 0.04 0.04 40.54 4.52
4914 5340 2.824341 GGAACGTCTCAGGGAAAGTAGA 59.176 50.000 0.00 0.00 0.00 2.59
4915 5341 3.447944 GGAACGTCTCAGGGAAAGTAGAT 59.552 47.826 0.00 0.00 0.00 1.98
4924 5350 9.528489 GTCTCAGGGAAAGTAGATATAAGAGAT 57.472 37.037 0.00 0.00 31.00 2.75
5105 5532 1.428448 TCCGACAGATGCTTGAAACG 58.572 50.000 0.00 0.00 0.00 3.60
5340 5772 1.958288 AGTAGATCCACACTTGGCCT 58.042 50.000 3.32 0.00 43.56 5.19
5345 5777 0.543749 ATCCACACTTGGCCTAGCTC 59.456 55.000 14.60 0.00 43.56 4.09
5403 5835 7.122055 ACAAAGGCATACCAAATATCGAAAAGA 59.878 33.333 0.00 0.00 39.06 2.52
5408 5840 9.313118 GGCATACCAAATATCGAAAAGAAAAAT 57.687 29.630 0.00 0.00 35.26 1.82
5455 5887 6.097839 ACGGAATGGTTTAGCTAAGTATCTCA 59.902 38.462 6.24 1.47 0.00 3.27
5474 5906 5.134661 TCTCAAAATAGGTTTTTGTCCCGT 58.865 37.500 9.79 0.00 39.62 5.28
5506 5938 0.446222 GCACCAACGCACGTTCATAT 59.554 50.000 5.28 0.00 36.00 1.78
5550 5982 7.674471 AGAAAGGAAACAATAAGTCTACTGC 57.326 36.000 0.00 0.00 0.00 4.40
5558 5990 2.823924 TAAGTCTACTGCGGCAACAA 57.176 45.000 3.44 0.00 0.00 2.83
5736 6168 3.049470 GTAGCTACTAGGGGGCGC 58.951 66.667 16.88 0.00 0.00 6.53
5737 6169 2.203596 TAGCTACTAGGGGGCGCC 60.204 66.667 21.18 21.18 0.00 6.53
5748 6180 3.857038 GGGCGCCGGGACTTGATA 61.857 66.667 22.54 0.00 0.00 2.15
5749 6181 2.280186 GGCGCCGGGACTTGATAG 60.280 66.667 12.58 0.00 0.00 2.08
5750 6182 2.280186 GCGCCGGGACTTGATAGG 60.280 66.667 2.18 0.00 0.00 2.57
5751 6183 2.280186 CGCCGGGACTTGATAGGC 60.280 66.667 2.18 0.00 44.00 3.93
5752 6184 2.280186 GCCGGGACTTGATAGGCG 60.280 66.667 2.18 0.00 38.28 5.52
5753 6185 2.792947 GCCGGGACTTGATAGGCGA 61.793 63.158 2.18 0.00 38.28 5.54
5754 6186 1.067582 CCGGGACTTGATAGGCGAC 59.932 63.158 0.00 0.00 0.00 5.19
5755 6187 1.067582 CGGGACTTGATAGGCGACC 59.932 63.158 0.00 0.00 0.00 4.79
5756 6188 1.672854 CGGGACTTGATAGGCGACCA 61.673 60.000 0.00 0.00 0.00 4.02
5757 6189 0.539986 GGGACTTGATAGGCGACCAA 59.460 55.000 0.00 0.00 0.00 3.67
5758 6190 1.653151 GGACTTGATAGGCGACCAAC 58.347 55.000 0.00 0.00 0.00 3.77
5759 6191 1.207329 GGACTTGATAGGCGACCAACT 59.793 52.381 0.00 0.00 0.00 3.16
5760 6192 2.271800 GACTTGATAGGCGACCAACTG 58.728 52.381 0.00 0.00 0.00 3.16
5761 6193 1.009829 CTTGATAGGCGACCAACTGC 58.990 55.000 0.00 0.00 0.00 4.40
5762 6194 0.323302 TTGATAGGCGACCAACTGCA 59.677 50.000 0.00 0.00 0.00 4.41
5763 6195 0.108186 TGATAGGCGACCAACTGCAG 60.108 55.000 13.48 13.48 0.00 4.41
5764 6196 0.175760 GATAGGCGACCAACTGCAGA 59.824 55.000 23.35 0.00 0.00 4.26
5765 6197 0.108138 ATAGGCGACCAACTGCAGAC 60.108 55.000 23.35 5.24 0.00 3.51
5766 6198 2.167398 TAGGCGACCAACTGCAGACC 62.167 60.000 23.35 9.44 0.00 3.85
5767 6199 2.280797 GCGACCAACTGCAGACCA 60.281 61.111 23.35 0.00 0.00 4.02
5768 6200 1.672356 GCGACCAACTGCAGACCAT 60.672 57.895 23.35 2.50 0.00 3.55
5769 6201 1.639298 GCGACCAACTGCAGACCATC 61.639 60.000 23.35 11.34 0.00 3.51
5770 6202 1.021390 CGACCAACTGCAGACCATCC 61.021 60.000 23.35 3.80 0.00 3.51
5771 6203 0.036732 GACCAACTGCAGACCATCCA 59.963 55.000 23.35 0.00 0.00 3.41
5772 6204 0.037303 ACCAACTGCAGACCATCCAG 59.963 55.000 23.35 2.37 0.00 3.86
5773 6205 1.310933 CCAACTGCAGACCATCCAGC 61.311 60.000 23.35 0.00 0.00 4.85
5774 6206 0.607217 CAACTGCAGACCATCCAGCA 60.607 55.000 23.35 0.00 35.43 4.41
5775 6207 0.330604 AACTGCAGACCATCCAGCAT 59.669 50.000 23.35 0.00 36.28 3.79
5776 6208 0.393944 ACTGCAGACCATCCAGCATG 60.394 55.000 23.35 0.00 36.28 4.06
5777 6209 1.725557 CTGCAGACCATCCAGCATGC 61.726 60.000 8.42 10.51 36.28 4.06
5778 6210 2.487532 GCAGACCATCCAGCATGCC 61.488 63.158 15.66 0.00 31.97 4.40
5779 6211 1.077285 CAGACCATCCAGCATGCCA 60.077 57.895 15.66 0.00 31.97 4.92
5780 6212 1.077212 AGACCATCCAGCATGCCAC 60.077 57.895 15.66 0.00 31.97 5.01
5781 6213 2.043652 ACCATCCAGCATGCCACC 60.044 61.111 15.66 0.00 31.97 4.61
5782 6214 2.836360 CCATCCAGCATGCCACCC 60.836 66.667 15.66 0.00 31.97 4.61
5783 6215 2.043752 CATCCAGCATGCCACCCA 60.044 61.111 15.66 0.00 31.97 4.51
5784 6216 2.125326 CATCCAGCATGCCACCCAG 61.125 63.158 15.66 0.00 31.97 4.45
5785 6217 4.746309 TCCAGCATGCCACCCAGC 62.746 66.667 15.66 0.00 31.97 4.85
5788 6220 4.119363 AGCATGCCACCCAGCGAT 62.119 61.111 15.66 0.00 34.65 4.58
5789 6221 3.142838 GCATGCCACCCAGCGATT 61.143 61.111 6.36 0.00 34.65 3.34
5790 6222 3.113745 CATGCCACCCAGCGATTC 58.886 61.111 0.00 0.00 34.65 2.52
5791 6223 2.124151 ATGCCACCCAGCGATTCC 60.124 61.111 0.00 0.00 34.65 3.01
5792 6224 2.982643 ATGCCACCCAGCGATTCCA 61.983 57.895 0.00 0.00 34.65 3.53
5793 6225 2.124151 GCCACCCAGCGATTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
5794 6226 2.484062 GCCACCCAGCGATTCCATG 61.484 63.158 0.00 0.00 0.00 3.66
5795 6227 1.077501 CCACCCAGCGATTCCATGT 60.078 57.895 0.00 0.00 0.00 3.21
5796 6228 1.097547 CCACCCAGCGATTCCATGTC 61.098 60.000 0.00 0.00 0.00 3.06
5797 6229 1.097547 CACCCAGCGATTCCATGTCC 61.098 60.000 0.00 0.00 0.00 4.02
5798 6230 1.526917 CCCAGCGATTCCATGTCCC 60.527 63.158 0.00 0.00 0.00 4.46
5799 6231 1.889105 CCAGCGATTCCATGTCCCG 60.889 63.158 0.00 0.00 0.00 5.14
5800 6232 2.203070 AGCGATTCCATGTCCCGC 60.203 61.111 9.86 9.86 45.39 6.13
5801 6233 3.279875 GCGATTCCATGTCCCGCC 61.280 66.667 0.00 0.00 39.97 6.13
5802 6234 2.967076 CGATTCCATGTCCCGCCG 60.967 66.667 0.00 0.00 0.00 6.46
5803 6235 3.279875 GATTCCATGTCCCGCCGC 61.280 66.667 0.00 0.00 0.00 6.53
5804 6236 4.875713 ATTCCATGTCCCGCCGCC 62.876 66.667 0.00 0.00 0.00 6.13
5807 6239 4.910585 CCATGTCCCGCCGCCTAC 62.911 72.222 0.00 0.00 0.00 3.18
5808 6240 4.155733 CATGTCCCGCCGCCTACA 62.156 66.667 0.00 0.00 0.00 2.74
5809 6241 3.849951 ATGTCCCGCCGCCTACAG 61.850 66.667 0.00 0.00 0.00 2.74
5811 6243 3.766691 GTCCCGCCGCCTACAGAA 61.767 66.667 0.00 0.00 0.00 3.02
5812 6244 3.766691 TCCCGCCGCCTACAGAAC 61.767 66.667 0.00 0.00 0.00 3.01
5813 6245 4.077184 CCCGCCGCCTACAGAACA 62.077 66.667 0.00 0.00 0.00 3.18
5814 6246 2.047655 CCGCCGCCTACAGAACAA 60.048 61.111 0.00 0.00 0.00 2.83
5815 6247 1.669760 CCGCCGCCTACAGAACAAA 60.670 57.895 0.00 0.00 0.00 2.83
5816 6248 1.495951 CGCCGCCTACAGAACAAAC 59.504 57.895 0.00 0.00 0.00 2.93
5817 6249 1.495951 GCCGCCTACAGAACAAACG 59.504 57.895 0.00 0.00 0.00 3.60
5818 6250 1.495951 CCGCCTACAGAACAAACGC 59.504 57.895 0.00 0.00 0.00 4.84
5819 6251 1.495951 CGCCTACAGAACAAACGCC 59.504 57.895 0.00 0.00 0.00 5.68
5820 6252 1.225376 CGCCTACAGAACAAACGCCA 61.225 55.000 0.00 0.00 0.00 5.69
5821 6253 0.517316 GCCTACAGAACAAACGCCAG 59.483 55.000 0.00 0.00 0.00 4.85
5822 6254 1.878953 CCTACAGAACAAACGCCAGT 58.121 50.000 0.00 0.00 0.00 4.00
5823 6255 2.868839 GCCTACAGAACAAACGCCAGTA 60.869 50.000 0.00 0.00 0.00 2.74
5824 6256 2.735134 CCTACAGAACAAACGCCAGTAC 59.265 50.000 0.00 0.00 0.00 2.73
5825 6257 2.614829 ACAGAACAAACGCCAGTACT 57.385 45.000 0.00 0.00 0.00 2.73
5826 6258 3.738830 ACAGAACAAACGCCAGTACTA 57.261 42.857 0.00 0.00 0.00 1.82
5827 6259 3.387397 ACAGAACAAACGCCAGTACTAC 58.613 45.455 0.00 0.00 0.00 2.73
5828 6260 3.181473 ACAGAACAAACGCCAGTACTACA 60.181 43.478 0.00 0.00 0.00 2.74
5829 6261 3.994392 CAGAACAAACGCCAGTACTACAT 59.006 43.478 0.00 0.00 0.00 2.29
5830 6262 5.165676 CAGAACAAACGCCAGTACTACATA 58.834 41.667 0.00 0.00 0.00 2.29
5831 6263 5.636121 CAGAACAAACGCCAGTACTACATAA 59.364 40.000 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.706373 ACCCTAGCCAGCACACGG 61.706 66.667 0.00 0.00 0.00 4.94
5 6 2.434884 CACCCTAGCCAGCACACG 60.435 66.667 0.00 0.00 0.00 4.49
6 7 2.747855 GCACCCTAGCCAGCACAC 60.748 66.667 0.00 0.00 0.00 3.82
14 15 2.938956 AAGATACATGGCACCCTAGC 57.061 50.000 0.00 0.00 0.00 3.42
15 16 3.392616 AGGAAAGATACATGGCACCCTAG 59.607 47.826 0.00 0.00 0.00 3.02
16 17 3.393687 AGGAAAGATACATGGCACCCTA 58.606 45.455 0.00 0.00 0.00 3.53
17 18 2.208872 AGGAAAGATACATGGCACCCT 58.791 47.619 0.00 0.00 0.00 4.34
18 19 2.736670 AGGAAAGATACATGGCACCC 57.263 50.000 0.00 0.00 0.00 4.61
19 20 3.891049 AGAAGGAAAGATACATGGCACC 58.109 45.455 0.00 0.00 0.00 5.01
20 21 5.904362 AAAGAAGGAAAGATACATGGCAC 57.096 39.130 0.00 0.00 0.00 5.01
21 22 7.175104 AGTAAAAGAAGGAAAGATACATGGCA 58.825 34.615 0.00 0.00 0.00 4.92
22 23 7.631717 AGTAAAAGAAGGAAAGATACATGGC 57.368 36.000 0.00 0.00 0.00 4.40
23 24 8.391106 CGAAGTAAAAGAAGGAAAGATACATGG 58.609 37.037 0.00 0.00 0.00 3.66
24 25 8.391106 CCGAAGTAAAAGAAGGAAAGATACATG 58.609 37.037 0.00 0.00 0.00 3.21
25 26 8.319146 TCCGAAGTAAAAGAAGGAAAGATACAT 58.681 33.333 0.00 0.00 0.00 2.29
26 27 7.673180 TCCGAAGTAAAAGAAGGAAAGATACA 58.327 34.615 0.00 0.00 0.00 2.29
27 28 8.604890 CATCCGAAGTAAAAGAAGGAAAGATAC 58.395 37.037 0.00 0.00 0.00 2.24
28 29 7.769044 CCATCCGAAGTAAAAGAAGGAAAGATA 59.231 37.037 0.00 0.00 0.00 1.98
29 30 6.599638 CCATCCGAAGTAAAAGAAGGAAAGAT 59.400 38.462 0.00 0.00 0.00 2.40
30 31 5.938125 CCATCCGAAGTAAAAGAAGGAAAGA 59.062 40.000 0.00 0.00 0.00 2.52
31 32 5.123979 CCCATCCGAAGTAAAAGAAGGAAAG 59.876 44.000 0.00 0.00 0.00 2.62
32 33 5.007682 CCCATCCGAAGTAAAAGAAGGAAA 58.992 41.667 0.00 0.00 0.00 3.13
33 34 4.042435 ACCCATCCGAAGTAAAAGAAGGAA 59.958 41.667 0.00 0.00 0.00 3.36
34 35 3.585732 ACCCATCCGAAGTAAAAGAAGGA 59.414 43.478 0.00 0.00 0.00 3.36
35 36 3.939592 GACCCATCCGAAGTAAAAGAAGG 59.060 47.826 0.00 0.00 0.00 3.46
36 37 3.939592 GGACCCATCCGAAGTAAAAGAAG 59.060 47.826 0.00 0.00 34.48 2.85
37 38 3.946606 GGACCCATCCGAAGTAAAAGAA 58.053 45.455 0.00 0.00 34.48 2.52
38 39 3.622166 GGACCCATCCGAAGTAAAAGA 57.378 47.619 0.00 0.00 34.48 2.52
49 50 1.185315 CCACAAACATGGACCCATCC 58.815 55.000 0.00 0.00 43.02 3.51
50 51 1.923356 ACCACAAACATGGACCCATC 58.077 50.000 0.00 0.00 43.02 3.51
51 52 2.247358 GAACCACAAACATGGACCCAT 58.753 47.619 0.00 0.00 43.02 4.00
52 53 1.063642 TGAACCACAAACATGGACCCA 60.064 47.619 0.00 0.00 43.02 4.51
53 54 1.698506 TGAACCACAAACATGGACCC 58.301 50.000 0.00 0.00 43.02 4.46
54 55 2.231235 GGATGAACCACAAACATGGACC 59.769 50.000 0.00 0.00 43.02 4.46
55 56 2.231235 GGGATGAACCACAAACATGGAC 59.769 50.000 0.00 0.00 43.02 4.02
56 57 2.524306 GGGATGAACCACAAACATGGA 58.476 47.619 0.00 0.00 43.02 3.41
57 58 1.202114 CGGGATGAACCACAAACATGG 59.798 52.381 0.00 0.00 46.10 3.66
58 59 1.885887 ACGGGATGAACCACAAACATG 59.114 47.619 0.00 0.00 41.20 3.21
59 60 2.286365 ACGGGATGAACCACAAACAT 57.714 45.000 0.00 0.00 41.20 2.71
60 61 2.060050 AACGGGATGAACCACAAACA 57.940 45.000 0.00 0.00 41.20 2.83
61 62 4.776795 ATAAACGGGATGAACCACAAAC 57.223 40.909 0.00 0.00 41.20 2.93
62 63 5.069251 ACAAATAAACGGGATGAACCACAAA 59.931 36.000 0.00 0.00 41.20 2.83
63 64 4.585162 ACAAATAAACGGGATGAACCACAA 59.415 37.500 0.00 0.00 41.20 3.33
64 65 4.145807 ACAAATAAACGGGATGAACCACA 58.854 39.130 0.00 0.00 41.20 4.17
65 66 4.457949 AGACAAATAAACGGGATGAACCAC 59.542 41.667 0.00 0.00 41.20 4.16
66 67 4.457603 CAGACAAATAAACGGGATGAACCA 59.542 41.667 0.00 0.00 41.20 3.67
67 68 4.142469 CCAGACAAATAAACGGGATGAACC 60.142 45.833 0.00 0.00 38.08 3.62
68 69 4.457949 ACCAGACAAATAAACGGGATGAAC 59.542 41.667 0.00 0.00 0.00 3.18
69 70 4.658063 ACCAGACAAATAAACGGGATGAA 58.342 39.130 0.00 0.00 0.00 2.57
70 71 4.295141 ACCAGACAAATAAACGGGATGA 57.705 40.909 0.00 0.00 0.00 2.92
71 72 4.380444 CCAACCAGACAAATAAACGGGATG 60.380 45.833 0.00 0.00 0.00 3.51
72 73 3.761752 CCAACCAGACAAATAAACGGGAT 59.238 43.478 0.00 0.00 0.00 3.85
73 74 3.150767 CCAACCAGACAAATAAACGGGA 58.849 45.455 0.00 0.00 0.00 5.14
74 75 2.888414 ACCAACCAGACAAATAAACGGG 59.112 45.455 0.00 0.00 0.00 5.28
75 76 4.277423 AGAACCAACCAGACAAATAAACGG 59.723 41.667 0.00 0.00 0.00 4.44
76 77 5.212194 CAGAACCAACCAGACAAATAAACG 58.788 41.667 0.00 0.00 0.00 3.60
77 78 5.977129 CACAGAACCAACCAGACAAATAAAC 59.023 40.000 0.00 0.00 0.00 2.01
78 79 5.654650 ACACAGAACCAACCAGACAAATAAA 59.345 36.000 0.00 0.00 0.00 1.40
79 80 5.067153 CACACAGAACCAACCAGACAAATAA 59.933 40.000 0.00 0.00 0.00 1.40
80 81 4.578516 CACACAGAACCAACCAGACAAATA 59.421 41.667 0.00 0.00 0.00 1.40
81 82 3.381272 CACACAGAACCAACCAGACAAAT 59.619 43.478 0.00 0.00 0.00 2.32
82 83 2.752354 CACACAGAACCAACCAGACAAA 59.248 45.455 0.00 0.00 0.00 2.83
83 84 2.290641 ACACACAGAACCAACCAGACAA 60.291 45.455 0.00 0.00 0.00 3.18
84 85 1.280710 ACACACAGAACCAACCAGACA 59.719 47.619 0.00 0.00 0.00 3.41
85 86 2.038387 ACACACAGAACCAACCAGAC 57.962 50.000 0.00 0.00 0.00 3.51
86 87 2.364632 CAACACACAGAACCAACCAGA 58.635 47.619 0.00 0.00 0.00 3.86
87 88 1.202290 GCAACACACAGAACCAACCAG 60.202 52.381 0.00 0.00 0.00 4.00
88 89 0.814457 GCAACACACAGAACCAACCA 59.186 50.000 0.00 0.00 0.00 3.67
89 90 1.102978 AGCAACACACAGAACCAACC 58.897 50.000 0.00 0.00 0.00 3.77
90 91 2.943033 AGTAGCAACACACAGAACCAAC 59.057 45.455 0.00 0.00 0.00 3.77
91 92 3.118408 AGAGTAGCAACACACAGAACCAA 60.118 43.478 0.00 0.00 0.00 3.67
92 93 2.434336 AGAGTAGCAACACACAGAACCA 59.566 45.455 0.00 0.00 0.00 3.67
93 94 2.802816 CAGAGTAGCAACACACAGAACC 59.197 50.000 0.00 0.00 0.00 3.62
94 95 2.221981 GCAGAGTAGCAACACACAGAAC 59.778 50.000 0.00 0.00 0.00 3.01
95 96 2.483876 GCAGAGTAGCAACACACAGAA 58.516 47.619 0.00 0.00 0.00 3.02
96 97 1.270305 GGCAGAGTAGCAACACACAGA 60.270 52.381 0.00 0.00 35.83 3.41
97 98 1.151668 GGCAGAGTAGCAACACACAG 58.848 55.000 0.00 0.00 35.83 3.66
98 99 0.758734 AGGCAGAGTAGCAACACACA 59.241 50.000 0.00 0.00 35.83 3.72
99 100 1.884235 AAGGCAGAGTAGCAACACAC 58.116 50.000 0.00 0.00 35.83 3.82
100 101 3.260632 TCATAAGGCAGAGTAGCAACACA 59.739 43.478 0.00 0.00 35.83 3.72
101 102 3.619038 GTCATAAGGCAGAGTAGCAACAC 59.381 47.826 0.00 0.00 35.83 3.32
102 103 3.515502 AGTCATAAGGCAGAGTAGCAACA 59.484 43.478 0.00 0.00 35.83 3.33
103 104 4.130286 AGTCATAAGGCAGAGTAGCAAC 57.870 45.455 0.00 0.00 35.83 4.17
104 105 4.826274 AAGTCATAAGGCAGAGTAGCAA 57.174 40.909 0.00 0.00 35.83 3.91
105 106 4.826274 AAAGTCATAAGGCAGAGTAGCA 57.174 40.909 0.00 0.00 35.83 3.49
106 107 6.754193 AGATAAAGTCATAAGGCAGAGTAGC 58.246 40.000 0.00 0.00 0.00 3.58
124 125 4.325028 TGCGCCCGACTTTATAGATAAA 57.675 40.909 4.18 0.00 0.00 1.40
125 126 4.242475 CATGCGCCCGACTTTATAGATAA 58.758 43.478 4.18 0.00 0.00 1.75
126 127 3.845178 CATGCGCCCGACTTTATAGATA 58.155 45.455 4.18 0.00 0.00 1.98
127 128 2.688507 CATGCGCCCGACTTTATAGAT 58.311 47.619 4.18 0.00 0.00 1.98
128 129 1.872237 GCATGCGCCCGACTTTATAGA 60.872 52.381 4.18 0.00 0.00 1.98
129 130 0.512952 GCATGCGCCCGACTTTATAG 59.487 55.000 4.18 0.00 0.00 1.31
130 131 0.179070 TGCATGCGCCCGACTTTATA 60.179 50.000 14.09 0.00 37.32 0.98
131 132 0.819259 ATGCATGCGCCCGACTTTAT 60.819 50.000 14.09 0.00 37.32 1.40
132 133 1.029408 AATGCATGCGCCCGACTTTA 61.029 50.000 14.09 0.00 37.32 1.85
133 134 1.876497 AAATGCATGCGCCCGACTTT 61.876 50.000 14.09 0.00 37.32 2.66
134 135 1.876497 AAAATGCATGCGCCCGACTT 61.876 50.000 14.09 0.00 37.32 3.01
135 136 2.270297 GAAAATGCATGCGCCCGACT 62.270 55.000 14.09 0.00 37.32 4.18
136 137 1.873572 GAAAATGCATGCGCCCGAC 60.874 57.895 14.09 0.00 37.32 4.79
137 138 1.594194 AAGAAAATGCATGCGCCCGA 61.594 50.000 14.09 0.00 37.32 5.14
138 139 0.737019 AAAGAAAATGCATGCGCCCG 60.737 50.000 14.09 0.00 37.32 6.13
139 140 2.292103 TAAAGAAAATGCATGCGCCC 57.708 45.000 14.09 0.20 37.32 6.13
140 141 4.660352 TTTTAAAGAAAATGCATGCGCC 57.340 36.364 14.09 0.00 30.92 6.53
161 162 5.181245 CGTGATCCAACCACTCATACTTTTT 59.819 40.000 0.00 0.00 32.64 1.94
162 163 4.695455 CGTGATCCAACCACTCATACTTTT 59.305 41.667 0.00 0.00 32.64 2.27
163 164 4.253685 CGTGATCCAACCACTCATACTTT 58.746 43.478 0.00 0.00 32.64 2.66
164 165 3.260884 ACGTGATCCAACCACTCATACTT 59.739 43.478 0.00 0.00 32.64 2.24
165 166 2.832129 ACGTGATCCAACCACTCATACT 59.168 45.455 0.00 0.00 32.64 2.12
166 167 3.187700 GACGTGATCCAACCACTCATAC 58.812 50.000 0.00 0.00 32.64 2.39
167 168 3.520290 GACGTGATCCAACCACTCATA 57.480 47.619 0.00 0.00 32.64 2.15
168 169 2.386661 GACGTGATCCAACCACTCAT 57.613 50.000 0.00 0.00 32.64 2.90
169 170 3.906660 GACGTGATCCAACCACTCA 57.093 52.632 0.00 0.00 32.64 3.41
179 180 6.489675 TCGTAATACTTTAGTGGACGTGATC 58.510 40.000 0.00 0.00 33.48 2.92
180 181 6.317140 TCTCGTAATACTTTAGTGGACGTGAT 59.683 38.462 0.00 0.00 32.20 3.06
181 182 5.643348 TCTCGTAATACTTTAGTGGACGTGA 59.357 40.000 0.00 10.70 33.39 4.35
182 183 5.872635 TCTCGTAATACTTTAGTGGACGTG 58.127 41.667 0.00 9.23 33.48 4.49
183 184 6.500684 TTCTCGTAATACTTTAGTGGACGT 57.499 37.500 0.00 0.00 33.48 4.34
184 185 6.074994 GCATTCTCGTAATACTTTAGTGGACG 60.075 42.308 6.68 6.68 33.22 4.79
185 186 6.755141 TGCATTCTCGTAATACTTTAGTGGAC 59.245 38.462 0.00 0.00 0.00 4.02
186 187 6.755141 GTGCATTCTCGTAATACTTTAGTGGA 59.245 38.462 0.00 0.00 0.00 4.02
187 188 6.291637 CGTGCATTCTCGTAATACTTTAGTGG 60.292 42.308 0.00 0.00 0.00 4.00
188 189 6.252869 ACGTGCATTCTCGTAATACTTTAGTG 59.747 38.462 0.00 0.00 40.15 2.74
189 190 6.252869 CACGTGCATTCTCGTAATACTTTAGT 59.747 38.462 0.82 0.00 39.98 2.24
190 191 6.471198 TCACGTGCATTCTCGTAATACTTTAG 59.529 38.462 11.67 0.00 39.98 1.85
191 192 6.324042 TCACGTGCATTCTCGTAATACTTTA 58.676 36.000 11.67 0.00 39.98 1.85
192 193 5.165676 TCACGTGCATTCTCGTAATACTTT 58.834 37.500 11.67 0.00 39.98 2.66
193 194 4.740268 TCACGTGCATTCTCGTAATACTT 58.260 39.130 11.67 0.00 39.98 2.24
194 195 4.095932 TCTCACGTGCATTCTCGTAATACT 59.904 41.667 11.67 0.00 39.98 2.12
195 196 4.348656 TCTCACGTGCATTCTCGTAATAC 58.651 43.478 11.67 0.00 39.98 1.89
196 197 4.334481 TCTCTCACGTGCATTCTCGTAATA 59.666 41.667 11.67 0.00 39.98 0.98
197 198 3.128764 TCTCTCACGTGCATTCTCGTAAT 59.871 43.478 11.67 0.00 39.98 1.89
198 199 2.486592 TCTCTCACGTGCATTCTCGTAA 59.513 45.455 11.67 0.00 39.98 3.18
199 200 2.081462 TCTCTCACGTGCATTCTCGTA 58.919 47.619 11.67 0.00 39.98 3.43
200 201 0.881796 TCTCTCACGTGCATTCTCGT 59.118 50.000 11.67 0.00 42.31 4.18
201 202 1.263776 GTCTCTCACGTGCATTCTCG 58.736 55.000 11.67 0.00 35.54 4.04
202 203 1.634702 GGTCTCTCACGTGCATTCTC 58.365 55.000 11.67 0.00 0.00 2.87
203 204 0.109086 CGGTCTCTCACGTGCATTCT 60.109 55.000 11.67 0.00 0.00 2.40
204 205 0.109272 TCGGTCTCTCACGTGCATTC 60.109 55.000 11.67 0.00 0.00 2.67
205 206 0.109086 CTCGGTCTCTCACGTGCATT 60.109 55.000 11.67 0.00 0.00 3.56
206 207 1.244697 ACTCGGTCTCTCACGTGCAT 61.245 55.000 11.67 0.00 0.00 3.96
207 208 1.853114 GACTCGGTCTCTCACGTGCA 61.853 60.000 11.67 0.00 0.00 4.57
208 209 1.154188 GACTCGGTCTCTCACGTGC 60.154 63.158 11.67 0.00 0.00 5.34
209 210 1.132844 CGACTCGGTCTCTCACGTG 59.867 63.158 9.94 9.94 0.00 4.49
210 211 1.301558 ACGACTCGGTCTCTCACGT 60.302 57.895 2.98 0.00 0.00 4.49
211 212 1.132844 CACGACTCGGTCTCTCACG 59.867 63.158 2.98 0.00 0.00 4.35
212 213 1.154188 GCACGACTCGGTCTCTCAC 60.154 63.158 2.98 0.00 0.00 3.51
213 214 0.889638 AAGCACGACTCGGTCTCTCA 60.890 55.000 2.98 0.00 0.00 3.27
214 215 0.241481 AAAGCACGACTCGGTCTCTC 59.759 55.000 2.98 0.00 0.00 3.20
215 216 0.674534 AAAAGCACGACTCGGTCTCT 59.325 50.000 2.98 0.00 0.00 3.10
216 217 1.499049 AAAAAGCACGACTCGGTCTC 58.501 50.000 2.98 0.00 0.00 3.36
217 218 3.680842 AAAAAGCACGACTCGGTCT 57.319 47.368 2.98 0.00 0.00 3.85
234 235 5.361285 AGCGGTTGCCCATGTATATTAAAAA 59.639 36.000 0.00 0.00 44.31 1.94
235 236 4.890581 AGCGGTTGCCCATGTATATTAAAA 59.109 37.500 0.00 0.00 44.31 1.52
236 237 4.465886 AGCGGTTGCCCATGTATATTAAA 58.534 39.130 0.00 0.00 44.31 1.52
237 238 4.093472 AGCGGTTGCCCATGTATATTAA 57.907 40.909 0.00 0.00 44.31 1.40
238 239 3.780804 AGCGGTTGCCCATGTATATTA 57.219 42.857 0.00 0.00 44.31 0.98
239 240 2.656947 AGCGGTTGCCCATGTATATT 57.343 45.000 0.00 0.00 44.31 1.28
240 241 2.622942 CAAAGCGGTTGCCCATGTATAT 59.377 45.455 0.00 0.00 44.31 0.86
241 242 2.020720 CAAAGCGGTTGCCCATGTATA 58.979 47.619 0.00 0.00 44.31 1.47
242 243 0.817013 CAAAGCGGTTGCCCATGTAT 59.183 50.000 0.00 0.00 44.31 2.29
243 244 0.538516 ACAAAGCGGTTGCCCATGTA 60.539 50.000 0.00 0.00 44.31 2.29
244 245 1.398958 AACAAAGCGGTTGCCCATGT 61.399 50.000 0.00 0.00 44.31 3.21
245 246 0.600557 TAACAAAGCGGTTGCCCATG 59.399 50.000 0.00 0.00 44.31 3.66
246 247 1.555967 ATAACAAAGCGGTTGCCCAT 58.444 45.000 0.00 0.00 44.31 4.00
247 248 1.813786 GTATAACAAAGCGGTTGCCCA 59.186 47.619 0.00 0.00 44.31 5.36
248 249 1.813786 TGTATAACAAAGCGGTTGCCC 59.186 47.619 0.00 0.00 44.31 5.36
249 250 2.486592 AGTGTATAACAAAGCGGTTGCC 59.513 45.455 0.00 0.00 44.31 4.52
250 251 3.824414 AGTGTATAACAAAGCGGTTGC 57.176 42.857 0.00 0.00 41.31 4.17
251 252 7.585286 TTACTAGTGTATAACAAAGCGGTTG 57.415 36.000 5.39 0.00 43.43 3.77
312 319 8.391106 GCATCGTCTGTTCTTAAATCAGTTATT 58.609 33.333 0.00 0.00 0.00 1.40
313 320 7.766278 AGCATCGTCTGTTCTTAAATCAGTTAT 59.234 33.333 0.00 0.00 0.00 1.89
325 333 1.016130 CGCCAAGCATCGTCTGTTCT 61.016 55.000 0.00 0.00 0.00 3.01
385 393 2.778299 TGGTGTTTGTAGGTGCATCTC 58.222 47.619 0.56 0.00 0.00 2.75
407 447 4.438744 GCCCCTGTTTCATCATCGTTTTAG 60.439 45.833 0.00 0.00 0.00 1.85
419 459 4.278513 CCCACCGCCCCTGTTTCA 62.279 66.667 0.00 0.00 0.00 2.69
420 460 4.280019 ACCCACCGCCCCTGTTTC 62.280 66.667 0.00 0.00 0.00 2.78
441 481 4.729856 GTCGGGTGGTTCGTCGGG 62.730 72.222 0.00 0.00 0.00 5.14
533 587 3.976701 CTGAAGCGCGGGGATGGTT 62.977 63.158 8.83 0.00 0.00 3.67
534 588 4.473520 CTGAAGCGCGGGGATGGT 62.474 66.667 8.83 0.00 0.00 3.55
630 698 5.555017 GTGTTCCATACATGCATCCTCTAT 58.445 41.667 0.00 0.00 39.39 1.98
631 699 4.501400 CGTGTTCCATACATGCATCCTCTA 60.501 45.833 0.00 0.00 39.39 2.43
632 700 3.742327 CGTGTTCCATACATGCATCCTCT 60.742 47.826 0.00 0.00 39.39 3.69
633 701 2.545526 CGTGTTCCATACATGCATCCTC 59.454 50.000 0.00 0.00 39.39 3.71
743 825 0.558712 AGGAGGAGAGCGAAGGGTAT 59.441 55.000 0.00 0.00 0.00 2.73
816 910 2.733858 GCTGCCTTTCTCTCTCGTAGTG 60.734 54.545 0.00 0.00 0.00 2.74
841 935 0.961753 CACCAGCCCCTGTTTTCTTC 59.038 55.000 0.00 0.00 0.00 2.87
870 964 1.996292 TTGTTTCTCGCTCTGGATCG 58.004 50.000 0.00 0.00 0.00 3.69
945 1039 3.726517 CGGCGCAGACCAAGGTTG 61.727 66.667 10.83 0.00 0.00 3.77
970 1067 2.492484 TGACCGTAGAAAGAAGCTCTCC 59.508 50.000 0.00 0.00 0.00 3.71
972 1069 3.118956 CCATGACCGTAGAAAGAAGCTCT 60.119 47.826 0.00 0.00 0.00 4.09
994 1374 3.260483 CAGCAGCTCCATCGACGC 61.260 66.667 0.00 0.00 0.00 5.19
1368 1760 3.477346 GGGGACGGGGGCTTACTC 61.477 72.222 0.00 0.00 0.00 2.59
1429 1821 1.332997 CTCGATTCAAAGATGCAGCCC 59.667 52.381 0.00 0.00 0.00 5.19
1542 1938 3.959464 CTCGAAAACGAAGGCGCGC 62.959 63.158 25.94 25.94 42.48 6.86
1543 1939 2.093983 CTCGAAAACGAAGGCGCG 59.906 61.111 0.00 0.00 42.48 6.86
1544 1940 1.130009 GACTCGAAAACGAAGGCGC 59.870 57.895 0.00 0.00 42.48 6.53
1617 2018 8.452989 AAAATCAAATGAATAAACAGAGCGAC 57.547 30.769 0.00 0.00 0.00 5.19
1712 2113 0.248094 CACTCAGCTCAATGCATGCG 60.248 55.000 14.09 0.00 45.94 4.73
1784 2186 2.266055 CCACCAGCCTCGACTTCC 59.734 66.667 0.00 0.00 0.00 3.46
2140 2542 2.803479 GTAGTCGTAGGCCCGGTG 59.197 66.667 0.00 0.00 0.00 4.94
2399 2801 0.640768 GACGACACTGTTGCTATCGC 59.359 55.000 0.00 0.00 36.26 4.58
2772 3174 1.739562 CTGGAAGAGCTGGTCGTGC 60.740 63.158 7.29 7.29 34.07 5.34
2878 3280 0.179119 GACGGATGATTCGGTTCGGT 60.179 55.000 0.00 0.00 35.74 4.69
2881 3283 2.135933 GATGGACGGATGATTCGGTTC 58.864 52.381 0.00 0.00 35.74 3.62
2882 3284 1.484653 TGATGGACGGATGATTCGGTT 59.515 47.619 0.00 0.00 35.74 4.44
2891 3293 0.617535 TCAGTGGGTGATGGACGGAT 60.618 55.000 0.00 0.00 0.00 4.18
3150 3552 1.270518 ACGCACAGAGAGAGTTTGCAT 60.271 47.619 0.00 0.00 32.51 3.96
3203 3605 1.002773 GGCGGGAACACCTAGAAAGAA 59.997 52.381 0.00 0.00 36.97 2.52
3204 3606 0.611714 GGCGGGAACACCTAGAAAGA 59.388 55.000 0.00 0.00 36.97 2.52
3205 3607 0.739813 CGGCGGGAACACCTAGAAAG 60.740 60.000 0.00 0.00 36.97 2.62
3206 3608 1.294138 CGGCGGGAACACCTAGAAA 59.706 57.895 0.00 0.00 36.97 2.52
3491 3893 1.687494 GCTTGCAGTCGTCGGTCATC 61.687 60.000 0.00 0.00 0.00 2.92
3816 4218 2.284288 CGCGTTGATCTTAAGCGTGTAC 60.284 50.000 16.06 0.00 44.96 2.90
3825 4227 3.794270 GCCAGCGCGTTGATCTTA 58.206 55.556 25.28 0.00 0.00 2.10
3873 4275 1.141234 GGTGAACCCGGACTCGATC 59.859 63.158 0.73 0.00 39.00 3.69
4001 4403 2.756760 GGAGCAGAGCCATTTGAATGAA 59.243 45.455 5.32 0.00 38.70 2.57
4002 4404 2.025605 AGGAGCAGAGCCATTTGAATGA 60.026 45.455 5.32 0.00 38.70 2.57
4003 4405 2.099263 CAGGAGCAGAGCCATTTGAATG 59.901 50.000 0.00 0.00 36.17 2.67
4004 4406 2.291411 ACAGGAGCAGAGCCATTTGAAT 60.291 45.455 0.00 0.00 0.00 2.57
4060 4462 1.608590 CCTCTGCGACAAACCAAACAT 59.391 47.619 0.00 0.00 0.00 2.71
4662 5079 4.436998 CCTCCGCCGCGAACTCTT 62.437 66.667 15.93 0.00 0.00 2.85
4889 5306 1.192146 TTCCCTGAGACGTTCCCTGG 61.192 60.000 0.00 0.00 0.00 4.45
4915 5341 8.783093 CCAAATCAATGGCGTTTATCTCTTATA 58.217 33.333 0.00 0.00 32.78 0.98
4924 5350 1.205893 GGCCCAAATCAATGGCGTTTA 59.794 47.619 0.00 0.00 46.31 2.01
5340 5772 2.265367 TGAGTTGGACCAATGGAGCTA 58.735 47.619 10.83 0.00 0.00 3.32
5345 5777 3.700539 TGCATTATGAGTTGGACCAATGG 59.299 43.478 10.83 0.00 0.00 3.16
5408 5840 6.422701 CCGTTCTTTATTGACAGTCTACACAA 59.577 38.462 1.31 0.00 0.00 3.33
5428 5860 6.985059 AGATACTTAGCTAAACCATTCCGTTC 59.015 38.462 7.74 1.47 0.00 3.95
5430 5862 6.097839 TGAGATACTTAGCTAAACCATTCCGT 59.902 38.462 7.74 2.06 0.00 4.69
5474 5906 7.127042 CGTGCGTTGGTGCTATATTTATAAAA 58.873 34.615 1.21 0.00 35.36 1.52
5485 5917 0.601576 ATGAACGTGCGTTGGTGCTA 60.602 50.000 14.89 0.00 38.60 3.49
5506 5938 7.824289 CCTTTCTTCATACTTGGATGACTTGTA 59.176 37.037 0.00 0.00 35.56 2.41
5719 6151 2.572149 GGCGCCCCCTAGTAGCTAC 61.572 68.421 18.11 16.43 0.00 3.58
5720 6152 2.203596 GGCGCCCCCTAGTAGCTA 60.204 66.667 18.11 0.00 0.00 3.32
5731 6163 3.809374 CTATCAAGTCCCGGCGCCC 62.809 68.421 23.46 6.58 0.00 6.13
5732 6164 2.280186 CTATCAAGTCCCGGCGCC 60.280 66.667 19.07 19.07 0.00 6.53
5733 6165 2.280186 CCTATCAAGTCCCGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
5734 6166 2.280186 GCCTATCAAGTCCCGGCG 60.280 66.667 0.00 0.00 0.00 6.46
5735 6167 2.280186 CGCCTATCAAGTCCCGGC 60.280 66.667 0.00 0.00 37.40 6.13
5736 6168 1.067582 GTCGCCTATCAAGTCCCGG 59.932 63.158 0.00 0.00 0.00 5.73
5737 6169 1.067582 GGTCGCCTATCAAGTCCCG 59.932 63.158 0.00 0.00 0.00 5.14
5738 6170 0.539986 TTGGTCGCCTATCAAGTCCC 59.460 55.000 0.00 0.00 0.00 4.46
5739 6171 1.207329 AGTTGGTCGCCTATCAAGTCC 59.793 52.381 0.00 0.00 23.82 3.85
5740 6172 2.271800 CAGTTGGTCGCCTATCAAGTC 58.728 52.381 0.00 0.00 28.81 3.01
5741 6173 1.676014 GCAGTTGGTCGCCTATCAAGT 60.676 52.381 0.00 0.00 31.65 3.16
5742 6174 1.009829 GCAGTTGGTCGCCTATCAAG 58.990 55.000 0.00 0.00 0.00 3.02
5743 6175 0.323302 TGCAGTTGGTCGCCTATCAA 59.677 50.000 0.00 0.00 0.00 2.57
5744 6176 0.108186 CTGCAGTTGGTCGCCTATCA 60.108 55.000 5.25 0.00 0.00 2.15
5745 6177 0.175760 TCTGCAGTTGGTCGCCTATC 59.824 55.000 14.67 0.00 0.00 2.08
5746 6178 0.108138 GTCTGCAGTTGGTCGCCTAT 60.108 55.000 14.67 0.00 0.00 2.57
5747 6179 1.292223 GTCTGCAGTTGGTCGCCTA 59.708 57.895 14.67 0.00 0.00 3.93
5748 6180 2.031163 GTCTGCAGTTGGTCGCCT 59.969 61.111 14.67 0.00 0.00 5.52
5749 6181 3.050275 GGTCTGCAGTTGGTCGCC 61.050 66.667 14.67 2.55 0.00 5.54
5750 6182 1.639298 GATGGTCTGCAGTTGGTCGC 61.639 60.000 14.67 0.00 0.00 5.19
5751 6183 1.021390 GGATGGTCTGCAGTTGGTCG 61.021 60.000 14.67 0.00 0.00 4.79
5752 6184 0.036732 TGGATGGTCTGCAGTTGGTC 59.963 55.000 14.67 8.31 0.00 4.02
5753 6185 0.037303 CTGGATGGTCTGCAGTTGGT 59.963 55.000 14.67 0.00 38.44 3.67
5754 6186 1.310933 GCTGGATGGTCTGCAGTTGG 61.311 60.000 14.67 0.00 44.65 3.77
5755 6187 0.607217 TGCTGGATGGTCTGCAGTTG 60.607 55.000 14.67 0.00 44.65 3.16
5756 6188 0.330604 ATGCTGGATGGTCTGCAGTT 59.669 50.000 14.67 0.00 44.65 3.16
5757 6189 0.393944 CATGCTGGATGGTCTGCAGT 60.394 55.000 14.67 0.00 44.65 4.40
5758 6190 1.725557 GCATGCTGGATGGTCTGCAG 61.726 60.000 11.37 7.63 45.55 4.41
5759 6191 1.751544 GCATGCTGGATGGTCTGCA 60.752 57.895 11.37 0.00 43.68 4.41
5760 6192 2.487532 GGCATGCTGGATGGTCTGC 61.488 63.158 18.92 0.00 31.99 4.26
5761 6193 1.077285 TGGCATGCTGGATGGTCTG 60.077 57.895 18.92 0.00 31.99 3.51
5762 6194 1.077212 GTGGCATGCTGGATGGTCT 60.077 57.895 18.92 0.00 31.99 3.85
5763 6195 2.123428 GGTGGCATGCTGGATGGTC 61.123 63.158 18.92 0.00 31.99 4.02
5764 6196 2.043652 GGTGGCATGCTGGATGGT 60.044 61.111 18.92 0.00 31.99 3.55
5765 6197 2.836360 GGGTGGCATGCTGGATGG 60.836 66.667 18.92 0.00 31.99 3.51
5766 6198 2.043752 TGGGTGGCATGCTGGATG 60.044 61.111 18.92 4.63 34.84 3.51
5767 6199 2.277737 CTGGGTGGCATGCTGGAT 59.722 61.111 18.92 0.00 0.00 3.41
5768 6200 4.746309 GCTGGGTGGCATGCTGGA 62.746 66.667 18.92 0.00 0.00 3.86
5771 6203 3.650298 AATCGCTGGGTGGCATGCT 62.650 57.895 18.92 0.00 0.00 3.79
5772 6204 3.129913 GAATCGCTGGGTGGCATGC 62.130 63.158 9.90 9.90 0.00 4.06
5773 6205 2.484062 GGAATCGCTGGGTGGCATG 61.484 63.158 0.00 0.00 0.00 4.06
5774 6206 2.124151 GGAATCGCTGGGTGGCAT 60.124 61.111 0.00 0.00 0.00 4.40
5775 6207 2.982643 ATGGAATCGCTGGGTGGCA 61.983 57.895 0.00 0.00 0.00 4.92
5776 6208 2.124151 ATGGAATCGCTGGGTGGC 60.124 61.111 0.00 0.00 0.00 5.01
5777 6209 1.077501 ACATGGAATCGCTGGGTGG 60.078 57.895 0.00 0.00 0.00 4.61
5778 6210 1.097547 GGACATGGAATCGCTGGGTG 61.098 60.000 0.00 0.00 0.00 4.61
5779 6211 1.224592 GGACATGGAATCGCTGGGT 59.775 57.895 0.00 0.00 0.00 4.51
5780 6212 1.526917 GGGACATGGAATCGCTGGG 60.527 63.158 0.00 0.00 0.00 4.45
5781 6213 1.889105 CGGGACATGGAATCGCTGG 60.889 63.158 0.00 0.00 0.00 4.85
5782 6214 2.537560 GCGGGACATGGAATCGCTG 61.538 63.158 14.50 3.39 42.62 5.18
5783 6215 2.203070 GCGGGACATGGAATCGCT 60.203 61.111 14.50 0.00 42.62 4.93
5784 6216 3.279875 GGCGGGACATGGAATCGC 61.280 66.667 13.75 13.75 44.80 4.58
5785 6217 2.967076 CGGCGGGACATGGAATCG 60.967 66.667 0.00 0.00 0.00 3.34
5786 6218 3.279875 GCGGCGGGACATGGAATC 61.280 66.667 9.78 0.00 0.00 2.52
5787 6219 4.875713 GGCGGCGGGACATGGAAT 62.876 66.667 9.78 0.00 0.00 3.01
5790 6222 4.910585 GTAGGCGGCGGGACATGG 62.911 72.222 9.78 0.00 0.00 3.66
5791 6223 4.155733 TGTAGGCGGCGGGACATG 62.156 66.667 9.78 0.00 0.00 3.21
5792 6224 3.849951 CTGTAGGCGGCGGGACAT 61.850 66.667 9.78 0.00 0.00 3.06
5794 6226 3.766691 TTCTGTAGGCGGCGGGAC 61.767 66.667 9.78 3.93 0.00 4.46
5795 6227 3.766691 GTTCTGTAGGCGGCGGGA 61.767 66.667 9.78 0.00 0.00 5.14
5796 6228 3.599285 TTGTTCTGTAGGCGGCGGG 62.599 63.158 9.78 0.00 0.00 6.13
5797 6229 1.669760 TTTGTTCTGTAGGCGGCGG 60.670 57.895 9.78 0.00 0.00 6.13
5798 6230 1.495951 GTTTGTTCTGTAGGCGGCG 59.504 57.895 0.51 0.51 0.00 6.46
5799 6231 1.495951 CGTTTGTTCTGTAGGCGGC 59.504 57.895 0.00 0.00 0.00 6.53
5800 6232 1.495951 GCGTTTGTTCTGTAGGCGG 59.504 57.895 0.00 0.00 0.00 6.13
5801 6233 1.225376 TGGCGTTTGTTCTGTAGGCG 61.225 55.000 0.00 0.00 0.00 5.52
5802 6234 0.517316 CTGGCGTTTGTTCTGTAGGC 59.483 55.000 0.00 0.00 0.00 3.93
5803 6235 1.878953 ACTGGCGTTTGTTCTGTAGG 58.121 50.000 0.00 0.00 0.00 3.18
5804 6236 3.650139 AGTACTGGCGTTTGTTCTGTAG 58.350 45.455 0.00 0.00 0.00 2.74
5805 6237 3.738830 AGTACTGGCGTTTGTTCTGTA 57.261 42.857 0.00 0.00 0.00 2.74
5806 6238 2.614829 AGTACTGGCGTTTGTTCTGT 57.385 45.000 0.00 0.00 0.00 3.41
5807 6239 3.386486 TGTAGTACTGGCGTTTGTTCTG 58.614 45.455 5.39 0.00 0.00 3.02
5808 6240 3.738830 TGTAGTACTGGCGTTTGTTCT 57.261 42.857 5.39 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.