Multiple sequence alignment - TraesCS2D01G313300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G313300 chr2D 100.000 8161 0 0 1 8161 402936935 402945095 0.000000e+00 15071.0
1 TraesCS2D01G313300 chr2D 98.617 1012 14 0 4749 5760 202671491 202672502 0.000000e+00 1792.0
2 TraesCS2D01G313300 chr2D 79.208 404 42 19 1437 1807 402938281 402938675 8.180000e-60 243.0
3 TraesCS2D01G313300 chr2D 79.208 404 42 17 1347 1741 402938371 402938741 8.180000e-60 243.0
4 TraesCS2D01G313300 chr2A 92.317 3163 171 45 1433 4560 540048527 540051652 0.000000e+00 4429.0
5 TraesCS2D01G313300 chr2A 92.094 1619 88 19 6015 7620 540052282 540053873 0.000000e+00 2244.0
6 TraesCS2D01G313300 chr2A 82.059 981 79 40 805 1741 540047980 540048907 0.000000e+00 747.0
7 TraesCS2D01G313300 chr2A 90.417 480 29 13 4278 4744 540051479 540051954 4.190000e-172 616.0
8 TraesCS2D01G313300 chr2A 95.385 260 7 2 5761 6015 540051945 540052204 7.620000e-110 409.0
9 TraesCS2D01G313300 chr2A 90.283 247 19 3 4260 4505 540051388 540051630 1.320000e-82 318.0
10 TraesCS2D01G313300 chr2A 92.342 222 15 2 7652 7871 540055237 540055458 1.710000e-81 315.0
11 TraesCS2D01G313300 chr2A 82.586 379 41 9 6 382 540047166 540047521 2.210000e-80 311.0
12 TraesCS2D01G313300 chr2A 85.892 241 29 5 4269 4505 540051433 540051672 1.360000e-62 252.0
13 TraesCS2D01G313300 chr2A 91.713 181 9 4 7984 8161 540070209 540070386 6.330000e-61 246.0
14 TraesCS2D01G313300 chr2A 100.000 49 0 0 7940 7988 540056355 540056403 3.140000e-14 91.6
15 TraesCS2D01G313300 chr2B 93.514 2775 129 31 1736 4476 476719077 476721834 0.000000e+00 4080.0
16 TraesCS2D01G313300 chr2B 89.007 1410 82 33 6015 7365 476722428 476723823 0.000000e+00 1677.0
17 TraesCS2D01G313300 chr2B 94.683 489 25 1 4260 4748 476721657 476722144 0.000000e+00 758.0
18 TraesCS2D01G313300 chr2B 86.753 619 27 8 847 1429 476717993 476718592 8.930000e-179 638.0
19 TraesCS2D01G313300 chr2B 86.375 389 44 4 1 382 476715650 476716036 4.560000e-112 416.0
20 TraesCS2D01G313300 chr2B 82.875 473 28 24 7410 7856 476723832 476724277 7.730000e-100 375.0
21 TraesCS2D01G313300 chr2B 88.365 318 10 2 1434 1751 476718507 476718797 2.800000e-94 357.0
22 TraesCS2D01G313300 chr2B 88.850 287 17 5 7889 8161 476724379 476724664 1.010000e-88 339.0
23 TraesCS2D01G313300 chr2B 97.753 178 3 1 5838 6014 476722174 476722351 1.030000e-78 305.0
24 TraesCS2D01G313300 chr2B 93.878 147 7 2 655 799 476716040 476716186 3.830000e-53 220.0
25 TraesCS2D01G313300 chr2B 79.570 186 36 2 30 214 38912444 38912260 1.850000e-26 132.0
26 TraesCS2D01G313300 chr4D 84.118 2380 269 54 2256 4608 505389706 505392003 0.000000e+00 2200.0
27 TraesCS2D01G313300 chr4D 98.524 1016 14 1 4749 5764 300493250 300494264 0.000000e+00 1792.0
28 TraesCS2D01G313300 chr4D 92.417 422 27 5 3937 4356 215202648 215203066 1.520000e-166 597.0
29 TraesCS2D01G313300 chr4D 92.199 423 28 5 3936 4356 228115265 228115684 1.960000e-165 593.0
30 TraesCS2D01G313300 chr4D 82.897 649 81 19 1508 2142 505388793 505389425 2.570000e-154 556.0
31 TraesCS2D01G313300 chr4D 82.679 560 67 15 892 1431 505388224 505388773 3.450000e-128 470.0
32 TraesCS2D01G313300 chr4D 95.984 249 7 3 5769 6015 215203061 215203308 1.280000e-107 401.0
33 TraesCS2D01G313300 chr4D 95.181 249 9 3 5769 6015 228115679 228115926 2.760000e-104 390.0
34 TraesCS2D01G313300 chr4D 79.719 498 56 26 4269 4748 505391743 505392213 1.320000e-82 318.0
35 TraesCS2D01G313300 chr4D 81.851 281 29 7 382 641 464518867 464518588 4.960000e-52 217.0
36 TraesCS2D01G313300 chr4D 96.923 65 2 0 6015 6079 215203384 215203448 8.660000e-20 110.0
37 TraesCS2D01G313300 chr4D 95.385 65 3 0 6015 6079 228116002 228116066 4.030000e-18 104.0
38 TraesCS2D01G313300 chr4D 84.848 99 6 1 1434 1523 505388677 505388775 3.140000e-14 91.6
39 TraesCS2D01G313300 chr5A 84.020 2378 266 55 2263 4608 689868525 689870820 0.000000e+00 2182.0
40 TraesCS2D01G313300 chr5A 80.887 1172 126 41 892 1989 689867027 689868174 0.000000e+00 833.0
41 TraesCS2D01G313300 chr5A 85.455 220 27 3 381 600 368545713 368545499 2.960000e-54 224.0
42 TraesCS2D01G313300 chr5A 82.390 159 14 4 5863 6009 689871092 689871248 8.600000e-25 126.0
43 TraesCS2D01G313300 chr5A 84.848 66 7 3 381 445 6209148 6209211 6.840000e-06 63.9
44 TraesCS2D01G313300 chr3D 98.915 1014 11 0 4749 5762 580654146 580653133 0.000000e+00 1812.0
45 TraesCS2D01G313300 chr3D 98.812 1010 11 1 4749 5758 386699185 386698177 0.000000e+00 1797.0
46 TraesCS2D01G313300 chr3D 98.425 1016 14 2 4749 5764 302296889 302295876 0.000000e+00 1786.0
47 TraesCS2D01G313300 chr3D 92.671 423 26 5 3936 4356 275605573 275605154 9.060000e-169 604.0
48 TraesCS2D01G313300 chr3D 96.460 226 6 2 5792 6015 275592487 275592262 1.000000e-98 372.0
49 TraesCS2D01G313300 chr3D 79.111 225 30 13 2896 3106 561454030 561453809 1.100000e-28 139.0
50 TraesCS2D01G313300 chr3D 78.947 171 36 0 31 201 93737645 93737475 5.170000e-22 117.0
51 TraesCS2D01G313300 chr6D 98.815 1013 11 1 4749 5760 36100621 36101633 0.000000e+00 1803.0
52 TraesCS2D01G313300 chr6D 98.123 1012 18 1 4749 5760 56997961 56996951 0.000000e+00 1762.0
53 TraesCS2D01G313300 chr6D 92.435 423 27 5 3936 4356 429338599 429339018 4.220000e-167 599.0
54 TraesCS2D01G313300 chr6D 96.386 249 6 3 5769 6015 429339013 429339260 2.740000e-109 407.0
55 TraesCS2D01G313300 chr6D 80.233 172 34 0 30 201 346846652 346846823 6.650000e-26 130.0
56 TraesCS2D01G313300 chr6D 96.923 65 2 0 6015 6079 429339336 429339400 8.660000e-20 110.0
57 TraesCS2D01G313300 chr7D 98.518 1012 14 1 4749 5760 69060963 69059953 0.000000e+00 1784.0
58 TraesCS2D01G313300 chr7D 92.435 423 25 6 3936 4356 7875526 7875109 1.520000e-166 597.0
59 TraesCS2D01G313300 chr7D 92.199 423 28 4 3936 4356 69468152 69467733 1.960000e-165 593.0
60 TraesCS2D01G313300 chr7D 96.774 248 6 2 5769 6015 69467738 69467492 5.890000e-111 412.0
61 TraesCS2D01G313300 chr7D 96.386 249 6 3 5769 6015 7875114 7874867 2.740000e-109 407.0
62 TraesCS2D01G313300 chr7D 78.191 188 35 6 30 214 504330290 504330106 1.860000e-21 115.0
63 TraesCS2D01G313300 chr7D 96.923 65 2 0 6015 6079 7874791 7874727 8.660000e-20 110.0
64 TraesCS2D01G313300 chr7D 96.923 65 2 0 6015 6079 69467416 69467352 8.660000e-20 110.0
65 TraesCS2D01G313300 chr1D 98.123 1012 19 0 4749 5760 15046581 15045570 0.000000e+00 1764.0
66 TraesCS2D01G313300 chr1D 88.015 267 13 6 381 647 459020324 459020077 1.720000e-76 298.0
67 TraesCS2D01G313300 chr4B 89.167 840 75 10 2351 3188 652273709 652274534 0.000000e+00 1033.0
68 TraesCS2D01G313300 chr4B 85.635 724 74 21 1509 2207 652272685 652273403 0.000000e+00 734.0
69 TraesCS2D01G313300 chr4B 84.456 579 72 7 3189 3756 652274611 652275182 9.250000e-154 555.0
70 TraesCS2D01G313300 chr4B 79.514 576 62 17 892 1431 652272115 652272670 7.790000e-95 359.0
71 TraesCS2D01G313300 chr4B 89.308 159 16 1 6206 6364 473123621 473123778 1.800000e-46 198.0
72 TraesCS2D01G313300 chr4B 90.217 92 5 2 5762 5851 652276285 652276374 5.170000e-22 117.0
73 TraesCS2D01G313300 chr4B 95.312 64 3 0 1470 1533 652272619 652272682 1.450000e-17 102.0
74 TraesCS2D01G313300 chr6B 82.060 563 79 16 2348 2905 630603177 630603722 2.080000e-125 460.0
75 TraesCS2D01G313300 chr6B 79.359 562 74 21 2355 2913 630600694 630601216 2.800000e-94 357.0
76 TraesCS2D01G313300 chr6B 78.863 563 75 23 2355 2913 630598232 630598754 2.820000e-89 340.0
77 TraesCS2D01G313300 chr6B 92.500 240 14 3 2678 2916 630609542 630609778 2.820000e-89 340.0
78 TraesCS2D01G313300 chr6B 91.667 240 15 5 2678 2916 630544759 630544994 2.200000e-85 327.0
79 TraesCS2D01G313300 chr6B 87.179 117 12 2 2527 2643 630544648 630544761 6.650000e-26 130.0
80 TraesCS2D01G313300 chrUn 86.010 193 20 7 4558 4746 337324746 337324557 5.000000e-47 200.0
81 TraesCS2D01G313300 chrUn 84.896 192 24 5 4558 4746 377165281 377165092 1.080000e-43 189.0
82 TraesCS2D01G313300 chrUn 89.831 59 3 2 5759 5814 416242309 416242251 1.140000e-08 73.1
83 TraesCS2D01G313300 chr3B 86.010 193 20 7 4558 4746 26218629 26218818 5.000000e-47 200.0
84 TraesCS2D01G313300 chr3B 83.190 232 24 5 6206 6437 125437395 125437179 1.800000e-46 198.0
85 TraesCS2D01G313300 chr3B 87.006 177 18 5 4558 4731 25819896 25820070 2.320000e-45 195.0
86 TraesCS2D01G313300 chr3B 87.006 177 18 5 4558 4731 26096009 26096183 2.320000e-45 195.0
87 TraesCS2D01G313300 chr3B 87.006 177 18 5 4558 4731 26140088 26140262 2.320000e-45 195.0
88 TraesCS2D01G313300 chr3B 87.006 177 18 5 4558 4731 26326031 26326205 2.320000e-45 195.0
89 TraesCS2D01G313300 chr3B 78.857 175 33 4 30 202 96361989 96362161 1.860000e-21 115.0
90 TraesCS2D01G313300 chr3B 86.047 86 9 3 2999 3082 748777082 748776998 1.130000e-13 89.8
91 TraesCS2D01G313300 chr3B 87.879 66 7 1 381 445 118504470 118504405 8.780000e-10 76.8
92 TraesCS2D01G313300 chr3B 89.831 59 3 2 5759 5814 25889607 25889665 1.140000e-08 73.1
93 TraesCS2D01G313300 chr1B 83.190 232 24 5 6206 6437 616773825 616773609 1.800000e-46 198.0
94 TraesCS2D01G313300 chr7B 88.679 159 17 1 6206 6364 722675980 722676137 8.360000e-45 193.0
95 TraesCS2D01G313300 chr7B 78.977 176 31 6 30 202 323623756 323623928 1.860000e-21 115.0
96 TraesCS2D01G313300 chr5B 82.759 232 25 5 6206 6437 686439800 686439584 8.360000e-45 193.0
97 TraesCS2D01G313300 chr5D 78.191 188 35 6 30 214 514077136 514076952 1.860000e-21 115.0
98 TraesCS2D01G313300 chr4A 100.000 31 0 0 6015 6045 479132073 479132103 3.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G313300 chr2D 402936935 402945095 8160 False 15071.000000 15071 100.000000 1 8161 1 chr2D.!!$F2 8160
1 TraesCS2D01G313300 chr2D 202671491 202672502 1011 False 1792.000000 1792 98.617000 4749 5760 1 chr2D.!!$F1 1011
2 TraesCS2D01G313300 chr2A 540047166 540056403 9237 False 973.260000 4429 90.337500 6 7988 10 chr2A.!!$F2 7982
3 TraesCS2D01G313300 chr2B 476715650 476724664 9014 False 916.500000 4080 90.205300 1 8161 10 chr2B.!!$F1 8160
4 TraesCS2D01G313300 chr4D 300493250 300494264 1014 False 1792.000000 1792 98.524000 4749 5764 1 chr4D.!!$F1 1015
5 TraesCS2D01G313300 chr4D 505388224 505392213 3989 False 727.120000 2200 82.852200 892 4748 5 chr4D.!!$F4 3856
6 TraesCS2D01G313300 chr4D 215202648 215203448 800 False 369.333333 597 95.108000 3937 6079 3 chr4D.!!$F2 2142
7 TraesCS2D01G313300 chr4D 228115265 228116066 801 False 362.333333 593 94.255000 3936 6079 3 chr4D.!!$F3 2143
8 TraesCS2D01G313300 chr5A 689867027 689871248 4221 False 1047.000000 2182 82.432333 892 6009 3 chr5A.!!$F2 5117
9 TraesCS2D01G313300 chr3D 580653133 580654146 1013 True 1812.000000 1812 98.915000 4749 5762 1 chr3D.!!$R7 1013
10 TraesCS2D01G313300 chr3D 386698177 386699185 1008 True 1797.000000 1797 98.812000 4749 5758 1 chr3D.!!$R5 1009
11 TraesCS2D01G313300 chr3D 302295876 302296889 1013 True 1786.000000 1786 98.425000 4749 5764 1 chr3D.!!$R4 1015
12 TraesCS2D01G313300 chr6D 36100621 36101633 1012 False 1803.000000 1803 98.815000 4749 5760 1 chr6D.!!$F1 1011
13 TraesCS2D01G313300 chr6D 56996951 56997961 1010 True 1762.000000 1762 98.123000 4749 5760 1 chr6D.!!$R1 1011
14 TraesCS2D01G313300 chr6D 429338599 429339400 801 False 372.000000 599 95.248000 3936 6079 3 chr6D.!!$F3 2143
15 TraesCS2D01G313300 chr7D 69059953 69060963 1010 True 1784.000000 1784 98.518000 4749 5760 1 chr7D.!!$R1 1011
16 TraesCS2D01G313300 chr7D 69467352 69468152 800 True 371.666667 593 95.298667 3936 6079 3 chr7D.!!$R4 2143
17 TraesCS2D01G313300 chr7D 7874727 7875526 799 True 371.333333 597 95.248000 3936 6079 3 chr7D.!!$R3 2143
18 TraesCS2D01G313300 chr1D 15045570 15046581 1011 True 1764.000000 1764 98.123000 4749 5760 1 chr1D.!!$R1 1011
19 TraesCS2D01G313300 chr4B 652272115 652276374 4259 False 483.333333 1033 87.383500 892 5851 6 chr4B.!!$F2 4959
20 TraesCS2D01G313300 chr6B 630598232 630603722 5490 False 385.666667 460 80.094000 2348 2913 3 chr6B.!!$F3 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 631 0.033504 GCTTGAACTGTCCAGGACGA 59.966 55.000 15.24 3.52 34.95 4.20 F
1418 3258 0.109086 CCAGTCGATGTCGCAGAAGT 60.109 55.000 0.00 0.00 39.69 3.01 F
1420 3260 0.171455 AGTCGATGTCGCAGAAGTCC 59.829 55.000 0.00 0.00 39.69 3.85 F
1426 3266 0.241213 TGTCGCAGAAGTCCTTCTCG 59.759 55.000 6.58 12.54 46.13 4.04 F
2649 5341 0.385390 TGCGCGATGAATCTCAGCTA 59.615 50.000 12.10 0.00 29.10 3.32 F
2892 8079 2.514803 ACTGGGCATGTAAGGTCAAAC 58.485 47.619 0.00 0.00 0.00 2.93 F
4318 9784 0.039618 GAAGCCCCCTGATGAACCAA 59.960 55.000 0.00 0.00 0.00 3.67 F
4319 9785 0.040204 AAGCCCCCTGATGAACCAAG 59.960 55.000 0.00 0.00 0.00 3.61 F
4351 9853 0.108585 ACAGAAGGCCGCAGAAGAAA 59.891 50.000 0.00 0.00 0.00 2.52 F
4361 9974 0.383949 GCAGAAGAAACCAACGGCAA 59.616 50.000 0.00 0.00 0.00 4.52 F
4777 10446 0.612174 TCTCTCGGTGACCTTCCCTG 60.612 60.000 0.00 0.00 0.00 4.45 F
6615 12440 0.247460 GTGGGAAAAAGATGCAGGCC 59.753 55.000 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 4717 0.249155 AGAACGCTCGTGAAACCGAA 60.249 50.000 0.00 0.00 36.24 4.30 R
2420 5109 1.018226 AGCATCGCTGTTCTCACTGC 61.018 55.000 0.00 0.00 42.86 4.40 R
2572 5264 1.292541 GCTTCGACGGGTCCTCTTT 59.707 57.895 0.00 0.00 0.00 2.52 R
2661 5353 2.306512 GTGGATAGGGTTGGTTGGTACA 59.693 50.000 0.00 0.00 0.00 2.90 R
4319 9785 0.173708 CTTCTGTCTGCTACCGGTCC 59.826 60.000 12.40 3.85 0.00 4.46 R
4342 9844 0.383949 TTGCCGTTGGTTTCTTCTGC 59.616 50.000 0.00 0.00 0.00 4.26 R
6093 11863 0.447801 CGCTGATAAACCACAGGTGC 59.552 55.000 0.00 0.00 35.34 5.01 R
6110 11880 1.425428 CAGATCAACCGCCTTTCGC 59.575 57.895 0.00 0.00 36.73 4.70 R
6340 12114 1.398692 TTCAGTGTTGTTGGGCCTTC 58.601 50.000 4.53 0.00 0.00 3.46 R
6344 12118 8.466798 AGTTAATATAATTCAGTGTTGTTGGGC 58.533 33.333 0.00 0.00 0.00 5.36 R
6720 12545 1.961277 CAGTTCAGTTCCGCGGCTT 60.961 57.895 23.51 4.96 0.00 4.35 R
7889 15160 0.460987 GCAGAGTGAAGACCGGATGG 60.461 60.000 9.46 0.00 42.84 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.117246 AGGATTTCCTCATGCACATCCAT 60.117 43.478 0.00 0.00 44.77 3.41
71 72 3.005472 GGATTTCCTCATGCACATCCATG 59.995 47.826 0.00 0.00 43.04 3.66
127 128 8.589701 AATACCTACCACTAAAATTCAAAGGG 57.410 34.615 0.00 0.00 0.00 3.95
131 132 4.721132 ACCACTAAAATTCAAAGGGTCGA 58.279 39.130 0.00 0.00 0.00 4.20
158 159 4.159557 ACATTGGATTAACAACTTGCCCT 58.840 39.130 0.00 0.00 32.39 5.19
165 166 5.710567 GGATTAACAACTTGCCCTAGAACTT 59.289 40.000 0.00 0.00 0.00 2.66
179 180 5.163343 CCCTAGAACTTCATCGGTAATTGGA 60.163 44.000 0.00 0.00 0.00 3.53
183 184 3.886123 ACTTCATCGGTAATTGGAAGGG 58.114 45.455 0.00 0.00 39.33 3.95
213 214 0.887933 GCCTTCCGAGCAAATTTCCA 59.112 50.000 0.00 0.00 0.00 3.53
266 273 2.692368 GGGAGGGTGGATGCTGGA 60.692 66.667 0.00 0.00 0.00 3.86
281 288 3.246880 GGAACCGGGAGTGGTGGT 61.247 66.667 6.32 0.00 42.89 4.16
303 310 1.301623 CGTTTATGGAGGGTGGCCA 59.698 57.895 0.00 0.00 40.24 5.36
371 379 3.594134 CGCTCAGAGGATTCTCAAAACT 58.406 45.455 3.21 0.00 42.34 2.66
403 411 2.672961 TTCTGAGAGTACGCCAATGG 57.327 50.000 0.00 0.00 0.00 3.16
404 412 0.175760 TCTGAGAGTACGCCAATGGC 59.824 55.000 15.52 15.52 46.75 4.40
421 429 8.502161 GCCAATGGCGTACTTTAATTTTATAG 57.498 34.615 9.14 0.00 39.62 1.31
422 430 8.347035 GCCAATGGCGTACTTTAATTTTATAGA 58.653 33.333 9.14 0.00 39.62 1.98
444 452 9.950496 ATAGAAGAGAGCAAAAGATTTACAAGA 57.050 29.630 0.00 0.00 0.00 3.02
445 453 8.682936 AGAAGAGAGCAAAAGATTTACAAGAA 57.317 30.769 0.00 0.00 0.00 2.52
446 454 8.782144 AGAAGAGAGCAAAAGATTTACAAGAAG 58.218 33.333 0.00 0.00 0.00 2.85
447 455 6.907741 AGAGAGCAAAAGATTTACAAGAAGC 58.092 36.000 0.00 0.00 0.00 3.86
448 456 6.018589 AGAGCAAAAGATTTACAAGAAGCC 57.981 37.500 0.00 0.00 0.00 4.35
451 459 6.393171 AGCAAAAGATTTACAAGAAGCCATC 58.607 36.000 0.00 0.00 0.00 3.51
454 462 6.817765 AAAGATTTACAAGAAGCCATCGAA 57.182 33.333 0.00 0.00 0.00 3.71
455 463 6.428385 AAGATTTACAAGAAGCCATCGAAG 57.572 37.500 0.00 0.00 0.00 3.79
456 464 4.878397 AGATTTACAAGAAGCCATCGAAGG 59.122 41.667 1.31 1.31 0.00 3.46
458 466 4.487714 TTACAAGAAGCCATCGAAGGAT 57.512 40.909 11.67 0.00 0.00 3.24
485 493 3.775202 CATCGATCGATGGAATACCTCC 58.225 50.000 38.63 0.00 45.89 4.30
492 500 4.534401 GGAATACCTCCACGCACC 57.466 61.111 0.00 0.00 44.67 5.01
493 501 1.153229 GGAATACCTCCACGCACCC 60.153 63.158 0.00 0.00 44.67 4.61
495 503 0.743345 GAATACCTCCACGCACCCAC 60.743 60.000 0.00 0.00 0.00 4.61
496 504 1.198759 AATACCTCCACGCACCCACT 61.199 55.000 0.00 0.00 0.00 4.00
497 505 0.324923 ATACCTCCACGCACCCACTA 60.325 55.000 0.00 0.00 0.00 2.74
498 506 0.968901 TACCTCCACGCACCCACTAG 60.969 60.000 0.00 0.00 0.00 2.57
499 507 1.982395 CCTCCACGCACCCACTAGA 60.982 63.158 0.00 0.00 0.00 2.43
502 510 0.038599 TCCACGCACCCACTAGACTA 59.961 55.000 0.00 0.00 0.00 2.59
503 511 0.892755 CCACGCACCCACTAGACTAA 59.107 55.000 0.00 0.00 0.00 2.24
504 512 1.274167 CCACGCACCCACTAGACTAAA 59.726 52.381 0.00 0.00 0.00 1.85
505 513 2.289195 CCACGCACCCACTAGACTAAAA 60.289 50.000 0.00 0.00 0.00 1.52
510 518 4.624452 CGCACCCACTAGACTAAAACTAAC 59.376 45.833 0.00 0.00 0.00 2.34
511 519 5.566230 CGCACCCACTAGACTAAAACTAACT 60.566 44.000 0.00 0.00 0.00 2.24
513 521 6.810676 GCACCCACTAGACTAAAACTAACTAC 59.189 42.308 0.00 0.00 0.00 2.73
514 522 7.309683 GCACCCACTAGACTAAAACTAACTACT 60.310 40.741 0.00 0.00 0.00 2.57
515 523 8.242739 CACCCACTAGACTAAAACTAACTACTC 58.757 40.741 0.00 0.00 0.00 2.59
516 524 7.946776 ACCCACTAGACTAAAACTAACTACTCA 59.053 37.037 0.00 0.00 0.00 3.41
517 525 8.242739 CCCACTAGACTAAAACTAACTACTCAC 58.757 40.741 0.00 0.00 0.00 3.51
523 531 9.028185 AGACTAAAACTAACTACTCACAAAACG 57.972 33.333 0.00 0.00 0.00 3.60
524 532 8.931385 ACTAAAACTAACTACTCACAAAACGA 57.069 30.769 0.00 0.00 0.00 3.85
525 533 9.538508 ACTAAAACTAACTACTCACAAAACGAT 57.461 29.630 0.00 0.00 0.00 3.73
529 537 9.754382 AAACTAACTACTCACAAAACGATCTAA 57.246 29.630 0.00 0.00 0.00 2.10
531 539 9.189723 ACTAACTACTCACAAAACGATCTAAAC 57.810 33.333 0.00 0.00 0.00 2.01
532 540 7.417496 AACTACTCACAAAACGATCTAAACC 57.583 36.000 0.00 0.00 0.00 3.27
533 541 6.756221 ACTACTCACAAAACGATCTAAACCT 58.244 36.000 0.00 0.00 0.00 3.50
534 542 6.867293 ACTACTCACAAAACGATCTAAACCTC 59.133 38.462 0.00 0.00 0.00 3.85
535 543 4.995487 ACTCACAAAACGATCTAAACCTCC 59.005 41.667 0.00 0.00 0.00 4.30
536 544 5.221661 ACTCACAAAACGATCTAAACCTCCT 60.222 40.000 0.00 0.00 0.00 3.69
537 545 6.014840 ACTCACAAAACGATCTAAACCTCCTA 60.015 38.462 0.00 0.00 0.00 2.94
539 547 5.929992 CACAAAACGATCTAAACCTCCTACA 59.070 40.000 0.00 0.00 0.00 2.74
541 549 4.732672 AACGATCTAAACCTCCTACACC 57.267 45.455 0.00 0.00 0.00 4.16
542 550 2.686915 ACGATCTAAACCTCCTACACCG 59.313 50.000 0.00 0.00 0.00 4.94
544 552 3.243002 CGATCTAAACCTCCTACACCGTC 60.243 52.174 0.00 0.00 0.00 4.79
545 553 3.446442 TCTAAACCTCCTACACCGTCT 57.554 47.619 0.00 0.00 0.00 4.18
546 554 3.771216 TCTAAACCTCCTACACCGTCTT 58.229 45.455 0.00 0.00 0.00 3.01
550 558 0.391263 CCTCCTACACCGTCTTTGGC 60.391 60.000 0.00 0.00 0.00 4.52
551 559 0.320374 CTCCTACACCGTCTTTGGCA 59.680 55.000 0.00 0.00 0.00 4.92
552 560 0.981183 TCCTACACCGTCTTTGGCAT 59.019 50.000 0.00 0.00 0.00 4.40
553 561 1.066430 TCCTACACCGTCTTTGGCATC 60.066 52.381 0.00 0.00 0.00 3.91
554 562 1.369625 CTACACCGTCTTTGGCATCC 58.630 55.000 0.00 0.00 0.00 3.51
555 563 0.035820 TACACCGTCTTTGGCATCCC 60.036 55.000 0.00 0.00 0.00 3.85
556 564 1.002134 CACCGTCTTTGGCATCCCT 60.002 57.895 0.00 0.00 0.00 4.20
557 565 0.609131 CACCGTCTTTGGCATCCCTT 60.609 55.000 0.00 0.00 0.00 3.95
559 567 0.322456 CCGTCTTTGGCATCCCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
561 569 1.611673 CGTCTTTGGCATCCCTTCACT 60.612 52.381 0.00 0.00 0.00 3.41
562 570 2.087646 GTCTTTGGCATCCCTTCACTC 58.912 52.381 0.00 0.00 0.00 3.51
564 572 0.039618 TTTGGCATCCCTTCACTCCC 59.960 55.000 0.00 0.00 0.00 4.30
565 573 0.846427 TTGGCATCCCTTCACTCCCT 60.846 55.000 0.00 0.00 0.00 4.20
566 574 0.044092 TGGCATCCCTTCACTCCCTA 59.956 55.000 0.00 0.00 0.00 3.53
569 577 2.224646 GGCATCCCTTCACTCCCTAATC 60.225 54.545 0.00 0.00 0.00 1.75
571 579 3.244387 GCATCCCTTCACTCCCTAATCTC 60.244 52.174 0.00 0.00 0.00 2.75
572 580 3.776731 TCCCTTCACTCCCTAATCTCA 57.223 47.619 0.00 0.00 0.00 3.27
574 582 4.227197 TCCCTTCACTCCCTAATCTCATC 58.773 47.826 0.00 0.00 0.00 2.92
575 583 3.006323 CCCTTCACTCCCTAATCTCATCG 59.994 52.174 0.00 0.00 0.00 3.84
577 585 4.526262 CCTTCACTCCCTAATCTCATCGAT 59.474 45.833 0.00 0.00 0.00 3.59
578 586 5.459536 TTCACTCCCTAATCTCATCGATG 57.540 43.478 19.61 19.61 31.20 3.84
579 587 4.729868 TCACTCCCTAATCTCATCGATGA 58.270 43.478 25.80 25.80 35.16 2.92
580 588 5.328565 TCACTCCCTAATCTCATCGATGAT 58.671 41.667 27.43 15.97 36.02 2.45
581 589 5.184671 TCACTCCCTAATCTCATCGATGATG 59.815 44.000 27.43 20.16 41.00 3.07
582 590 5.047448 CACTCCCTAATCTCATCGATGATGT 60.047 44.000 27.43 16.29 40.55 3.06
583 591 6.151817 CACTCCCTAATCTCATCGATGATGTA 59.848 42.308 27.43 17.53 40.55 2.29
584 592 6.151985 ACTCCCTAATCTCATCGATGATGTAC 59.848 42.308 27.43 0.00 40.55 2.90
586 594 6.665248 TCCCTAATCTCATCGATGATGTACAT 59.335 38.462 27.43 8.43 40.55 2.29
588 596 6.755607 CCTAATCTCATCGATGATGTACATGG 59.244 42.308 27.43 18.30 40.55 3.66
589 597 3.917988 TCTCATCGATGATGTACATGGC 58.082 45.455 27.43 0.00 40.55 4.40
595 603 2.498167 GATGATGTACATGGCCAGACC 58.502 52.381 14.43 0.00 39.56 3.85
596 604 0.546122 TGATGTACATGGCCAGACCC 59.454 55.000 14.43 0.00 37.83 4.46
597 605 0.532862 GATGTACATGGCCAGACCCG 60.533 60.000 14.43 0.00 37.83 5.28
598 606 0.980754 ATGTACATGGCCAGACCCGA 60.981 55.000 13.05 0.00 37.83 5.14
599 607 1.153429 GTACATGGCCAGACCCGAC 60.153 63.158 13.05 0.00 37.83 4.79
600 608 2.717044 TACATGGCCAGACCCGACG 61.717 63.158 13.05 0.00 37.83 5.12
601 609 4.838152 CATGGCCAGACCCGACGG 62.838 72.222 13.05 6.99 37.83 4.79
607 615 2.030562 CAGACCCGACGGTTGCTT 59.969 61.111 13.94 0.00 44.88 3.91
608 616 2.030562 AGACCCGACGGTTGCTTG 59.969 61.111 13.94 0.00 44.88 4.01
611 619 1.838568 GACCCGACGGTTGCTTGAAC 61.839 60.000 13.94 0.00 44.88 3.18
613 621 1.569493 CCGACGGTTGCTTGAACTG 59.431 57.895 5.48 0.00 45.36 3.16
617 625 2.701587 CGGTTGCTTGAACTGTCCA 58.298 52.632 0.00 0.00 36.33 4.02
618 626 0.588252 CGGTTGCTTGAACTGTCCAG 59.412 55.000 0.00 0.00 36.33 3.86
620 628 1.476833 GGTTGCTTGAACTGTCCAGGA 60.477 52.381 0.00 0.00 34.66 3.86
621 629 1.604278 GTTGCTTGAACTGTCCAGGAC 59.396 52.381 13.35 13.35 0.00 3.85
623 631 0.033504 GCTTGAACTGTCCAGGACGA 59.966 55.000 15.24 3.52 34.95 4.20
624 632 1.784525 CTTGAACTGTCCAGGACGAC 58.215 55.000 15.24 6.64 34.95 4.34
636 644 2.821991 AGGACGACTGAAAACTCAGG 57.178 50.000 7.04 0.00 41.76 3.86
638 646 1.540363 GGACGACTGAAAACTCAGGCA 60.540 52.381 8.62 0.00 45.78 4.75
640 648 2.808543 GACGACTGAAAACTCAGGCATT 59.191 45.455 8.62 0.00 45.78 3.56
641 649 2.808543 ACGACTGAAAACTCAGGCATTC 59.191 45.455 8.62 0.00 45.78 2.67
645 653 5.506317 CGACTGAAAACTCAGGCATTCTTTT 60.506 40.000 8.62 0.00 45.78 2.27
646 654 5.594926 ACTGAAAACTCAGGCATTCTTTTG 58.405 37.500 7.04 0.00 41.76 2.44
647 655 5.360714 ACTGAAAACTCAGGCATTCTTTTGA 59.639 36.000 7.04 0.00 41.76 2.69
648 656 6.041296 ACTGAAAACTCAGGCATTCTTTTGAT 59.959 34.615 7.04 0.00 41.76 2.57
650 658 8.125978 TGAAAACTCAGGCATTCTTTTGATAT 57.874 30.769 0.00 0.00 0.00 1.63
651 659 8.246180 TGAAAACTCAGGCATTCTTTTGATATC 58.754 33.333 0.00 0.00 0.00 1.63
652 660 7.707624 AAACTCAGGCATTCTTTTGATATCA 57.292 32.000 0.00 0.00 0.00 2.15
653 661 6.690194 ACTCAGGCATTCTTTTGATATCAC 57.310 37.500 4.48 0.00 0.00 3.06
683 691 6.590068 AGGAATAGAATGTCATGTCCTCTTG 58.410 40.000 0.00 0.00 27.49 3.02
687 695 7.667575 ATAGAATGTCATGTCCTCTTGTACT 57.332 36.000 0.00 0.00 0.00 2.73
1040 2830 1.228429 ATTCCCCAACACCACCACG 60.228 57.895 0.00 0.00 0.00 4.94
1041 2831 2.706952 ATTCCCCAACACCACCACGG 62.707 60.000 0.00 0.00 42.50 4.94
1042 2832 3.879885 CCCCAACACCACCACGGA 61.880 66.667 0.00 0.00 38.63 4.69
1043 2833 2.593436 CCCAACACCACCACGGAC 60.593 66.667 0.00 0.00 38.63 4.79
1044 2834 2.593436 CCAACACCACCACGGACC 60.593 66.667 0.00 0.00 38.63 4.46
1045 2835 2.190843 CAACACCACCACGGACCA 59.809 61.111 0.00 0.00 38.63 4.02
1046 2836 2.184167 CAACACCACCACGGACCAC 61.184 63.158 0.00 0.00 38.63 4.16
1047 2837 3.409605 AACACCACCACGGACCACC 62.410 63.158 0.00 0.00 38.63 4.61
1048 2838 3.867783 CACCACCACGGACCACCA 61.868 66.667 0.00 0.00 38.63 4.17
1049 2839 3.868985 ACCACCACGGACCACCAC 61.869 66.667 0.00 0.00 38.63 4.16
1080 2882 0.757188 AATCCGTCGCTCTCCTCCAT 60.757 55.000 0.00 0.00 0.00 3.41
1090 2892 0.856982 TCTCCTCCATCTCCTCCTCC 59.143 60.000 0.00 0.00 0.00 4.30
1091 2893 0.859760 CTCCTCCATCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
1092 2894 0.560193 TCCTCCATCTCCTCCTCCTG 59.440 60.000 0.00 0.00 0.00 3.86
1093 2895 1.120795 CCTCCATCTCCTCCTCCTGC 61.121 65.000 0.00 0.00 0.00 4.85
1094 2896 1.074926 TCCATCTCCTCCTCCTGCC 60.075 63.158 0.00 0.00 0.00 4.85
1218 3022 1.305887 CTCCCTCCCCGGTACAGTT 60.306 63.158 0.00 0.00 0.00 3.16
1223 3027 3.777910 CCCCGGTACAGTTCCCCG 61.778 72.222 0.00 0.00 41.37 5.73
1273 3113 2.668550 GGCTGCTCCCGTTCGTTT 60.669 61.111 0.00 0.00 0.00 3.60
1320 3160 0.456995 CGCGGTGTGTTGTTTTGGTT 60.457 50.000 0.00 0.00 0.00 3.67
1359 3199 3.197790 CAGCGGTGGCGGAATGAG 61.198 66.667 6.74 0.00 46.35 2.90
1407 3247 4.148825 GCAGCGGTCCCAGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
1408 3248 2.202797 CAGCGGTCCCAGTCGATG 60.203 66.667 0.00 0.00 36.49 3.84
1409 3249 2.680352 AGCGGTCCCAGTCGATGT 60.680 61.111 0.00 0.00 0.00 3.06
1410 3250 2.202756 GCGGTCCCAGTCGATGTC 60.203 66.667 0.00 0.00 0.00 3.06
1411 3251 2.102357 CGGTCCCAGTCGATGTCG 59.898 66.667 0.00 0.00 41.45 4.35
1412 3252 2.202756 GGTCCCAGTCGATGTCGC 60.203 66.667 0.00 0.00 39.60 5.19
1413 3253 2.571757 GTCCCAGTCGATGTCGCA 59.428 61.111 0.00 0.00 39.60 5.10
1414 3254 1.517257 GTCCCAGTCGATGTCGCAG 60.517 63.158 0.00 0.00 39.60 5.18
1415 3255 1.677633 TCCCAGTCGATGTCGCAGA 60.678 57.895 0.00 0.00 39.60 4.26
1416 3256 1.215382 CCCAGTCGATGTCGCAGAA 59.785 57.895 0.00 0.00 39.69 3.02
1417 3257 0.803768 CCCAGTCGATGTCGCAGAAG 60.804 60.000 0.00 0.00 39.69 2.85
1418 3258 0.109086 CCAGTCGATGTCGCAGAAGT 60.109 55.000 0.00 0.00 39.69 3.01
1419 3259 1.263776 CAGTCGATGTCGCAGAAGTC 58.736 55.000 0.00 0.00 39.69 3.01
1420 3260 0.171455 AGTCGATGTCGCAGAAGTCC 59.829 55.000 0.00 0.00 39.69 3.85
1421 3261 0.171455 GTCGATGTCGCAGAAGTCCT 59.829 55.000 0.00 0.00 39.69 3.85
1422 3262 0.888619 TCGATGTCGCAGAAGTCCTT 59.111 50.000 0.00 0.00 39.69 3.36
1423 3263 1.135373 TCGATGTCGCAGAAGTCCTTC 60.135 52.381 0.00 0.00 39.69 3.46
1424 3264 3.459033 TCGATGTCGCAGAAGTCCTTCT 61.459 50.000 3.71 3.71 43.33 2.85
1425 3265 2.535331 GATGTCGCAGAAGTCCTTCTC 58.465 52.381 6.58 2.45 46.13 2.87
1426 3266 0.241213 TGTCGCAGAAGTCCTTCTCG 59.759 55.000 6.58 12.54 46.13 4.04
1427 3267 1.073768 GTCGCAGAAGTCCTTCTCGC 61.074 60.000 6.58 12.13 46.13 5.03
1428 3268 1.080501 CGCAGAAGTCCTTCTCGCA 60.081 57.895 20.79 0.00 46.13 5.10
1429 3269 1.075425 CGCAGAAGTCCTTCTCGCAG 61.075 60.000 20.79 14.12 46.13 5.18
1430 3270 0.739112 GCAGAAGTCCTTCTCGCAGG 60.739 60.000 18.30 6.73 46.13 4.85
1431 3271 0.891373 CAGAAGTCCTTCTCGCAGGA 59.109 55.000 6.58 0.00 46.13 3.86
1461 3301 4.778415 GACGAGCGCGCCTTCTGA 62.778 66.667 30.33 0.00 42.48 3.27
1579 3518 4.821589 GGCGCGTCCTTCTCCCAG 62.822 72.222 8.43 0.00 0.00 4.45
1580 3519 4.821589 GCGCGTCCTTCTCCCAGG 62.822 72.222 8.43 0.00 34.86 4.45
1581 3520 4.148825 CGCGTCCTTCTCCCAGGG 62.149 72.222 0.00 0.00 34.24 4.45
1582 3521 4.475135 GCGTCCTTCTCCCAGGGC 62.475 72.222 0.00 0.00 34.89 5.19
1583 3522 3.003173 CGTCCTTCTCCCAGGGCA 61.003 66.667 0.00 0.00 38.64 5.36
1584 3523 2.993853 GTCCTTCTCCCAGGGCAG 59.006 66.667 0.00 0.00 38.57 4.85
1585 3524 1.613630 GTCCTTCTCCCAGGGCAGA 60.614 63.158 0.00 1.75 38.57 4.26
1586 3525 1.306482 TCCTTCTCCCAGGGCAGAG 60.306 63.158 0.00 0.00 34.24 3.35
1587 3526 2.373707 CCTTCTCCCAGGGCAGAGG 61.374 68.421 0.00 5.41 0.00 3.69
1588 3527 3.011517 TTCTCCCAGGGCAGAGGC 61.012 66.667 0.00 0.00 40.13 4.70
2117 4501 4.032104 GCGTTGGTTACTGTAATTAGTCGG 59.968 45.833 3.23 0.00 32.19 4.79
2134 4518 1.001974 TCGGTTCCACTGAATCCACTG 59.998 52.381 0.00 0.00 28.96 3.66
2207 4716 4.827304 TCATTGAGCAAATTCGTGAACA 57.173 36.364 0.00 0.00 0.00 3.18
2208 4717 5.375417 TCATTGAGCAAATTCGTGAACAT 57.625 34.783 0.00 0.00 0.00 2.71
2209 4718 5.771469 TCATTGAGCAAATTCGTGAACATT 58.229 33.333 0.00 0.00 0.00 2.71
2210 4719 5.858049 TCATTGAGCAAATTCGTGAACATTC 59.142 36.000 0.00 0.00 0.00 2.67
2211 4720 3.809234 TGAGCAAATTCGTGAACATTCG 58.191 40.909 0.00 0.00 0.00 3.34
2215 4724 3.733727 GCAAATTCGTGAACATTCGGTTT 59.266 39.130 0.00 0.00 40.63 3.27
2216 4725 4.143618 GCAAATTCGTGAACATTCGGTTTC 60.144 41.667 0.00 0.00 40.63 2.78
2223 4762 0.511221 AACATTCGGTTTCACGAGCG 59.489 50.000 0.00 0.00 44.47 5.03
2403 5092 5.870978 GGAATTCCCAAATCAACAGTCATTG 59.129 40.000 14.03 0.00 34.14 2.82
2404 5093 6.423776 AATTCCCAAATCAACAGTCATTGT 57.576 33.333 0.00 0.00 43.45 2.71
2420 5109 8.668353 ACAGTCATTGTATGCTACTAAATGTTG 58.332 33.333 0.00 0.00 38.56 3.33
2421 5110 7.641411 CAGTCATTGTATGCTACTAAATGTTGC 59.359 37.037 0.00 0.00 45.29 4.17
2434 5123 0.870393 ATGTTGCAGTGAGAACAGCG 59.130 50.000 12.18 0.00 35.60 5.18
2438 5127 1.293963 TGCAGTGAGAACAGCGATGC 61.294 55.000 0.00 0.00 0.00 3.91
2572 5264 2.618816 GGTGACCAGAGATTTGCCATGA 60.619 50.000 0.00 0.00 0.00 3.07
2637 5329 1.594862 GCTTCTTCTTGTATGCGCGAT 59.405 47.619 12.10 2.89 0.00 4.58
2649 5341 0.385390 TGCGCGATGAATCTCAGCTA 59.615 50.000 12.10 0.00 29.10 3.32
2661 5353 5.474532 TGAATCTCAGCTACAACTTGCAAAT 59.525 36.000 0.00 0.00 0.00 2.32
2662 5354 4.754372 TCTCAGCTACAACTTGCAAATG 57.246 40.909 0.00 5.45 0.00 2.32
2817 8003 4.397382 CATAACAACAGTTCACATGCTCG 58.603 43.478 0.00 0.00 0.00 5.03
2851 8038 6.431234 ACTGATTTTGGTGTTCTGAATAGGTC 59.569 38.462 0.00 0.00 0.00 3.85
2860 8047 6.015434 GGTGTTCTGAATAGGTCCACAAAAAT 60.015 38.462 8.28 0.00 0.00 1.82
2892 8079 2.514803 ACTGGGCATGTAAGGTCAAAC 58.485 47.619 0.00 0.00 0.00 2.93
3020 8215 5.183904 AGACTAAAGTGCCCAATTGATGTTC 59.816 40.000 7.12 0.00 0.00 3.18
3217 8493 9.213777 ACTTTAGATCAACATAAGGGTGATAGA 57.786 33.333 0.00 0.00 0.00 1.98
3343 8620 3.698539 TGGCATTCAGAACAAGTTTGTGA 59.301 39.130 0.00 0.00 41.31 3.58
3378 8655 8.273780 ACTCTCTAAAGCAAATTGTAAGGATG 57.726 34.615 0.00 0.00 0.00 3.51
3395 8673 2.743928 GGCTGCTGGTTCAGTCCG 60.744 66.667 0.00 0.00 36.49 4.79
3416 8694 4.270084 CCGTTTTTCCTTCTTCTTTTTGCC 59.730 41.667 0.00 0.00 0.00 4.52
3514 8792 3.399330 TCAAGGGAAGCACGAAAAGTAG 58.601 45.455 0.00 0.00 0.00 2.57
3546 8833 3.753272 GCTGAGTATTCTCACCAGCAAAA 59.247 43.478 0.00 0.00 44.58 2.44
3552 8839 6.662755 AGTATTCTCACCAGCAAAATGGATA 58.337 36.000 0.00 0.00 43.57 2.59
3629 8916 5.393461 GCAATTCAAGGGTGACATCTTTAGG 60.393 44.000 0.00 0.00 31.90 2.69
3691 8978 6.708949 TCAACCACTAGTTTTGATACAACTCC 59.291 38.462 11.20 0.00 36.18 3.85
3729 9016 8.055279 TGTCTTTGGAAATTATTCTGATCACC 57.945 34.615 0.00 0.00 35.79 4.02
3730 9017 7.669304 TGTCTTTGGAAATTATTCTGATCACCA 59.331 33.333 0.00 0.00 35.79 4.17
3791 9203 4.404073 ACCACTATGTAAAGCTCTCTCCAG 59.596 45.833 0.00 0.00 0.00 3.86
3820 9232 9.378551 TCCATATGTGTGAGTTTAGTTTCATAC 57.621 33.333 1.24 0.00 36.39 2.39
3929 9348 9.066892 TCTAACACTAAAAATTCTCATTGTGCT 57.933 29.630 0.00 0.00 0.00 4.40
4001 9425 4.455533 TGAGGAACATGCACAATCTTGTAC 59.544 41.667 0.00 0.00 39.91 2.90
4015 9439 6.660521 ACAATCTTGTACATCATGTGGAATGT 59.339 34.615 0.00 3.55 40.16 2.71
4136 9566 2.717139 GATAGTAGGCTGCCCGGTGC 62.717 65.000 16.57 4.04 41.77 5.01
4176 9606 6.251589 CAGTATGCGTACTTCTTACTCAACTG 59.748 42.308 16.10 0.00 39.12 3.16
4318 9784 0.039618 GAAGCCCCCTGATGAACCAA 59.960 55.000 0.00 0.00 0.00 3.67
4319 9785 0.040204 AAGCCCCCTGATGAACCAAG 59.960 55.000 0.00 0.00 0.00 3.61
4320 9786 1.380380 GCCCCCTGATGAACCAAGG 60.380 63.158 0.00 0.00 0.00 3.61
4324 9826 0.392998 CCCTGATGAACCAAGGACCG 60.393 60.000 0.00 0.00 0.00 4.79
4334 9836 1.541310 CCAAGGACCGGTAGCAGACA 61.541 60.000 7.34 0.00 0.00 3.41
4339 9841 0.173708 GACCGGTAGCAGACAGAAGG 59.826 60.000 7.34 0.00 0.00 3.46
4342 9844 1.153549 GGTAGCAGACAGAAGGCCG 60.154 63.158 0.00 0.00 0.00 6.13
4344 9846 2.282783 TAGCAGACAGAAGGCCGCA 61.283 57.895 0.00 0.00 0.00 5.69
4347 9849 1.004560 CAGACAGAAGGCCGCAGAA 60.005 57.895 0.00 0.00 0.00 3.02
4351 9853 0.108585 ACAGAAGGCCGCAGAAGAAA 59.891 50.000 0.00 0.00 0.00 2.52
4353 9855 0.606673 AGAAGGCCGCAGAAGAAACC 60.607 55.000 0.00 0.00 0.00 3.27
4361 9974 0.383949 GCAGAAGAAACCAACGGCAA 59.616 50.000 0.00 0.00 0.00 4.52
4401 10014 1.172812 AGGAAGAACCAAACGGCAGC 61.173 55.000 0.00 0.00 42.04 5.25
4537 10192 1.917787 GGCAAATGGAAGGCCCCAA 60.918 57.895 4.69 0.00 41.90 4.12
4722 10391 3.503363 GTGTGGAGCATCAGATGTGAAAA 59.497 43.478 12.18 0.00 35.88 2.29
4738 10407 7.881232 AGATGTGAAAAATTGCCTTGATGAAAT 59.119 29.630 0.00 0.00 0.00 2.17
4739 10408 7.424227 TGTGAAAAATTGCCTTGATGAAATC 57.576 32.000 0.00 0.00 45.83 2.17
4777 10446 0.612174 TCTCTCGGTGACCTTCCCTG 60.612 60.000 0.00 0.00 0.00 4.45
5964 11644 9.874205 TTCAAATCTTGAAATGTCCAATATTCC 57.126 29.630 0.00 0.00 45.94 3.01
6051 11821 7.391554 TCCTTGTTTGATTTGAGATTCTACTGG 59.608 37.037 0.00 0.00 0.00 4.00
6098 11868 3.946201 AGCGTTCCTGCTGCACCT 61.946 61.111 0.00 0.00 45.28 4.00
6110 11880 1.470098 GCTGCACCTGTGGTTTATCAG 59.530 52.381 0.00 0.00 31.02 2.90
6129 11899 1.982073 GCGAAAGGCGGTTGATCTGG 61.982 60.000 0.00 0.00 41.29 3.86
6138 11908 0.813821 GGTTGATCTGGAGCCAAAGC 59.186 55.000 0.00 0.00 40.32 3.51
6306 12080 7.710044 AGTGTAAATGTTAGCAGAGATGAGATG 59.290 37.037 0.00 0.00 0.00 2.90
6396 12195 5.237344 AGTCATTTGTCCTGAAAGAAGAACG 59.763 40.000 0.00 0.00 34.07 3.95
6438 12237 4.823989 ACTTGTCCTGAAAGAAGAACATGG 59.176 41.667 0.00 0.00 34.07 3.66
6522 12337 8.555166 CTTGTTAATTAAGCAAGTGAAACGAA 57.445 30.769 20.68 1.75 45.86 3.85
6523 12338 7.901874 TGTTAATTAAGCAAGTGAAACGAAC 57.098 32.000 0.00 0.00 45.86 3.95
6524 12339 7.473366 TGTTAATTAAGCAAGTGAAACGAACA 58.527 30.769 0.00 0.00 45.86 3.18
6546 12362 4.213482 CAGTAGGTTAAACCAGTGTGAAGC 59.787 45.833 0.00 0.00 41.95 3.86
6615 12440 0.247460 GTGGGAAAAAGATGCAGGCC 59.753 55.000 0.00 0.00 0.00 5.19
6656 12481 4.053067 GGATGACGACGACGACAC 57.947 61.111 15.32 8.67 44.93 3.67
6657 12482 1.500844 GGATGACGACGACGACACT 59.499 57.895 15.32 4.54 44.93 3.55
6720 12545 2.327325 AGTTGGAAGCAGGTAGAGGA 57.673 50.000 0.00 0.00 0.00 3.71
6816 12645 3.508840 GCGTGTATGGTGCAGGGC 61.509 66.667 0.00 0.00 0.00 5.19
6819 12648 2.046411 TGTATGGTGCAGGGCGTG 60.046 61.111 2.14 2.14 0.00 5.34
6820 12649 2.267642 GTATGGTGCAGGGCGTGA 59.732 61.111 12.03 0.00 0.00 4.35
6951 12786 0.670546 CGTGCTCGTCCAAGACCAAT 60.671 55.000 0.00 0.00 0.00 3.16
6962 12797 2.886523 CCAAGACCAATGCTGAACAGAA 59.113 45.455 5.97 0.00 0.00 3.02
6970 12805 3.533606 ATGCTGAACAGAAGCTCGTAT 57.466 42.857 5.97 0.00 41.42 3.06
7009 12844 1.152290 TGGTTCCTACGGTGGGTCA 60.152 57.895 10.54 5.35 0.00 4.02
7137 12979 5.642686 GATGTACAGACAGAGACAAGTACC 58.357 45.833 0.33 0.00 39.50 3.34
7257 13103 5.692204 TCTCACTGAAAACTTGATCGAGAAC 59.308 40.000 17.27 5.47 0.00 3.01
7323 13169 3.118847 TGATCAGAGTCAAGGCTAGCTTG 60.119 47.826 15.72 16.07 0.00 4.01
7326 13175 3.445450 TCAGAGTCAAGGCTAGCTTGTAG 59.555 47.826 15.72 1.19 33.84 2.74
7453 13302 4.004314 GGCTTAGTTCTCCCTGTTCTTTC 58.996 47.826 0.00 0.00 0.00 2.62
7476 13325 4.201871 CGTTGTTTGTGGTACAATCAGTGT 60.202 41.667 0.00 0.00 44.16 3.55
7477 13326 4.891627 TGTTTGTGGTACAATCAGTGTG 57.108 40.909 0.00 0.00 44.16 3.82
7518 13367 3.199677 CACGTTTGGTTGGTCAGAGTTA 58.800 45.455 0.00 0.00 0.00 2.24
7557 13430 2.693797 CAGAATGTCAGTGTGTTGGC 57.306 50.000 0.00 0.00 0.00 4.52
7559 13432 1.949525 AGAATGTCAGTGTGTTGGCAC 59.050 47.619 0.00 0.00 45.44 5.01
7562 13435 1.378531 TGTCAGTGTGTTGGCACTTC 58.621 50.000 0.00 0.00 46.45 3.01
7632 13509 8.978564 CATGAATATGCCTAGTACTCTACTTG 57.021 38.462 0.00 0.00 40.14 3.16
7639 13516 5.000012 CCTAGTACTCTACTTGGTTGCTG 58.000 47.826 0.00 0.00 43.67 4.41
7648 13525 6.049955 TCTACTTGGTTGCTGCTACTATTT 57.950 37.500 13.54 1.34 0.00 1.40
7649 13526 5.874810 TCTACTTGGTTGCTGCTACTATTTG 59.125 40.000 13.54 4.70 0.00 2.32
7685 14894 1.082117 CGATAACGGAACAAGCGGCT 61.082 55.000 0.00 0.00 35.72 5.52
7707 14916 1.154430 AGGCCCAACTCCTAAAACCA 58.846 50.000 0.00 0.00 30.79 3.67
7716 14925 4.993705 ACTCCTAAAACCATGTCTGGAA 57.006 40.909 0.00 0.00 46.37 3.53
7718 14927 3.670625 TCCTAAAACCATGTCTGGAACG 58.329 45.455 0.00 0.00 46.37 3.95
7739 14948 4.201832 ACGTACTGTTAGCAGATCTTCGAG 60.202 45.833 14.09 0.00 45.28 4.04
7758 14967 4.275689 TCGAGACATGCAGAAAACAAACAT 59.724 37.500 0.00 0.00 0.00 2.71
7851 15062 2.189594 TCCTGCAGAACCAACATCAG 57.810 50.000 17.39 0.00 0.00 2.90
7858 15069 3.077359 CAGAACCAACATCAGGACCTTC 58.923 50.000 0.00 0.00 0.00 3.46
7871 15142 2.069273 GGACCTTCGTTGTGTCATCAG 58.931 52.381 0.00 0.00 0.00 2.90
7872 15143 2.548067 GGACCTTCGTTGTGTCATCAGT 60.548 50.000 0.00 0.00 0.00 3.41
7873 15144 2.731976 GACCTTCGTTGTGTCATCAGTC 59.268 50.000 0.00 0.00 0.00 3.51
7874 15145 2.102420 ACCTTCGTTGTGTCATCAGTCA 59.898 45.455 0.00 0.00 0.00 3.41
7875 15146 3.244215 ACCTTCGTTGTGTCATCAGTCAT 60.244 43.478 0.00 0.00 0.00 3.06
7876 15147 3.369147 CCTTCGTTGTGTCATCAGTCATC 59.631 47.826 0.00 0.00 0.00 2.92
7877 15148 3.942130 TCGTTGTGTCATCAGTCATCT 57.058 42.857 0.00 0.00 0.00 2.90
7878 15149 4.257267 TCGTTGTGTCATCAGTCATCTT 57.743 40.909 0.00 0.00 0.00 2.40
7879 15150 4.631131 TCGTTGTGTCATCAGTCATCTTT 58.369 39.130 0.00 0.00 0.00 2.52
7880 15151 5.778862 TCGTTGTGTCATCAGTCATCTTTA 58.221 37.500 0.00 0.00 0.00 1.85
7881 15152 5.863935 TCGTTGTGTCATCAGTCATCTTTAG 59.136 40.000 0.00 0.00 0.00 1.85
7884 15155 6.596309 TGTGTCATCAGTCATCTTTAGTCT 57.404 37.500 0.00 0.00 0.00 3.24
7885 15156 6.997655 TGTGTCATCAGTCATCTTTAGTCTT 58.002 36.000 0.00 0.00 0.00 3.01
7886 15157 7.093354 TGTGTCATCAGTCATCTTTAGTCTTC 58.907 38.462 0.00 0.00 0.00 2.87
7888 15159 7.816995 GTGTCATCAGTCATCTTTAGTCTTCTT 59.183 37.037 0.00 0.00 0.00 2.52
7889 15160 8.031864 TGTCATCAGTCATCTTTAGTCTTCTTC 58.968 37.037 0.00 0.00 0.00 2.87
7890 15161 7.491048 GTCATCAGTCATCTTTAGTCTTCTTCC 59.509 40.741 0.00 0.00 0.00 3.46
7892 15163 7.487822 TCAGTCATCTTTAGTCTTCTTCCAT 57.512 36.000 0.00 0.00 0.00 3.41
7893 15164 7.551585 TCAGTCATCTTTAGTCTTCTTCCATC 58.448 38.462 0.00 0.00 0.00 3.51
7894 15165 6.760770 CAGTCATCTTTAGTCTTCTTCCATCC 59.239 42.308 0.00 0.00 0.00 3.51
7895 15166 5.751028 GTCATCTTTAGTCTTCTTCCATCCG 59.249 44.000 0.00 0.00 0.00 4.18
7896 15167 4.737855 TCTTTAGTCTTCTTCCATCCGG 57.262 45.455 0.00 0.00 0.00 5.14
8019 16118 0.114560 CCCGGGGATTAGAGCTAGGA 59.885 60.000 14.71 0.00 0.00 2.94
8029 16128 7.156000 GGGATTAGAGCTAGGAATCAAGTAAC 58.844 42.308 13.72 0.29 32.30 2.50
8063 16165 5.850653 CGCGCATGCAAATATTACAATAAGA 59.149 36.000 19.57 0.00 42.97 2.10
8065 16167 6.088085 GCGCATGCAAATATTACAATAAGACC 59.912 38.462 19.57 0.00 42.15 3.85
8155 16264 2.236395 GCTGAGTTGCCTACTTTAGGGA 59.764 50.000 1.44 0.00 46.32 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.069765 GGGTCCGCGATCATGTCAT 59.930 57.895 8.23 0.00 0.00 3.06
16 17 2.499205 GGGTCCGCGATCATGTCA 59.501 61.111 8.23 0.00 0.00 3.58
17 18 2.280186 GGGGTCCGCGATCATGTC 60.280 66.667 8.23 0.00 0.00 3.06
18 19 4.221422 CGGGGTCCGCGATCATGT 62.221 66.667 23.09 0.00 41.17 3.21
70 71 1.271840 GGTCATCACCTAGGGCCACA 61.272 60.000 14.81 0.00 40.00 4.17
71 72 1.527370 GGTCATCACCTAGGGCCAC 59.473 63.158 14.81 2.00 40.00 5.01
131 132 5.757886 CAAGTTGTTAATCCAATGTCGTGT 58.242 37.500 0.00 0.00 0.00 4.49
143 144 6.303839 TGAAGTTCTAGGGCAAGTTGTTAAT 58.696 36.000 4.48 0.00 0.00 1.40
158 159 6.346096 CCTTCCAATTACCGATGAAGTTCTA 58.654 40.000 4.17 0.00 32.47 2.10
165 166 1.133915 GGCCCTTCCAATTACCGATGA 60.134 52.381 0.00 0.00 34.01 2.92
199 200 2.799978 GTTTTGGTGGAAATTTGCTCGG 59.200 45.455 11.22 0.00 0.00 4.63
213 214 1.458927 CTCCCCCTTCGGTTTTGGT 59.541 57.895 0.00 0.00 0.00 3.67
230 231 0.250640 CACCTCTGTTTGCTGGAGCT 60.251 55.000 0.00 0.00 42.66 4.09
232 233 0.607489 CCCACCTCTGTTTGCTGGAG 60.607 60.000 0.00 0.00 0.00 3.86
233 234 1.059584 TCCCACCTCTGTTTGCTGGA 61.060 55.000 0.00 0.00 0.00 3.86
234 235 0.607489 CTCCCACCTCTGTTTGCTGG 60.607 60.000 0.00 0.00 0.00 4.85
266 273 3.622826 CGACCACCACTCCCGGTT 61.623 66.667 0.00 0.00 37.07 4.44
281 288 1.219664 CACCCTCCATAAACGCCGA 59.780 57.895 0.00 0.00 0.00 5.54
286 293 0.683179 GGTGGCCACCCTCCATAAAC 60.683 60.000 40.65 14.43 45.68 2.01
325 332 1.133915 ACCTCTCCTCTCCTCTAAGCG 60.134 57.143 0.00 0.00 0.00 4.68
329 337 1.487142 CGTGACCTCTCCTCTCCTCTA 59.513 57.143 0.00 0.00 0.00 2.43
383 391 2.935238 GCCATTGGCGTACTCTCAGAAA 60.935 50.000 12.82 0.00 39.62 2.52
387 395 4.932789 GCCATTGGCGTACTCTCA 57.067 55.556 12.82 0.00 39.62 3.27
418 426 9.950496 TCTTGTAAATCTTTTGCTCTCTTCTAT 57.050 29.630 0.00 0.00 0.00 1.98
419 427 9.778741 TTCTTGTAAATCTTTTGCTCTCTTCTA 57.221 29.630 0.00 0.00 0.00 2.10
420 428 8.682936 TTCTTGTAAATCTTTTGCTCTCTTCT 57.317 30.769 0.00 0.00 0.00 2.85
421 429 7.536964 GCTTCTTGTAAATCTTTTGCTCTCTTC 59.463 37.037 0.00 0.00 0.00 2.87
422 430 7.366513 GCTTCTTGTAAATCTTTTGCTCTCTT 58.633 34.615 0.00 0.00 0.00 2.85
424 432 6.089476 GGCTTCTTGTAAATCTTTTGCTCTC 58.911 40.000 0.00 0.00 0.00 3.20
425 433 5.536161 TGGCTTCTTGTAAATCTTTTGCTCT 59.464 36.000 0.00 0.00 0.00 4.09
426 434 5.772521 TGGCTTCTTGTAAATCTTTTGCTC 58.227 37.500 0.00 0.00 0.00 4.26
428 436 5.287035 CGATGGCTTCTTGTAAATCTTTTGC 59.713 40.000 0.00 0.00 0.00 3.68
429 437 6.611381 TCGATGGCTTCTTGTAAATCTTTTG 58.389 36.000 0.00 0.00 0.00 2.44
430 438 6.817765 TCGATGGCTTCTTGTAAATCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
431 439 6.127897 CCTTCGATGGCTTCTTGTAAATCTTT 60.128 38.462 4.15 0.00 0.00 2.52
432 440 5.355350 CCTTCGATGGCTTCTTGTAAATCTT 59.645 40.000 4.15 0.00 0.00 2.40
434 442 4.876107 TCCTTCGATGGCTTCTTGTAAATC 59.124 41.667 12.42 0.00 0.00 2.17
435 443 4.843728 TCCTTCGATGGCTTCTTGTAAAT 58.156 39.130 12.42 0.00 0.00 1.40
437 445 3.973206 TCCTTCGATGGCTTCTTGTAA 57.027 42.857 12.42 0.00 0.00 2.41
439 447 2.636830 CATCCTTCGATGGCTTCTTGT 58.363 47.619 12.42 0.00 41.99 3.16
440 448 1.332997 GCATCCTTCGATGGCTTCTTG 59.667 52.381 12.42 6.20 45.25 3.02
441 449 1.673168 GCATCCTTCGATGGCTTCTT 58.327 50.000 12.42 0.00 45.25 2.52
442 450 0.531532 CGCATCCTTCGATGGCTTCT 60.532 55.000 12.42 0.00 45.25 2.85
443 451 0.530650 TCGCATCCTTCGATGGCTTC 60.531 55.000 12.42 0.00 45.25 3.86
444 452 0.107703 TTCGCATCCTTCGATGGCTT 60.108 50.000 12.42 0.02 45.25 4.35
445 453 0.811616 GTTCGCATCCTTCGATGGCT 60.812 55.000 12.42 0.00 45.25 4.75
446 454 1.089481 TGTTCGCATCCTTCGATGGC 61.089 55.000 12.42 0.61 45.25 4.40
447 455 1.528586 GATGTTCGCATCCTTCGATGG 59.471 52.381 11.07 11.07 46.22 3.51
448 456 2.937994 GATGTTCGCATCCTTCGATG 57.062 50.000 0.00 0.00 46.22 3.84
475 483 1.153229 GGGTGCGTGGAGGTATTCC 60.153 63.158 0.00 0.00 46.98 3.01
476 484 0.743345 GTGGGTGCGTGGAGGTATTC 60.743 60.000 0.00 0.00 0.00 1.75
477 485 1.198759 AGTGGGTGCGTGGAGGTATT 61.199 55.000 0.00 0.00 0.00 1.89
478 486 0.324923 TAGTGGGTGCGTGGAGGTAT 60.325 55.000 0.00 0.00 0.00 2.73
479 487 0.968901 CTAGTGGGTGCGTGGAGGTA 60.969 60.000 0.00 0.00 0.00 3.08
480 488 2.203728 TAGTGGGTGCGTGGAGGT 60.204 61.111 0.00 0.00 0.00 3.85
482 490 1.215647 GTCTAGTGGGTGCGTGGAG 59.784 63.158 0.00 0.00 0.00 3.86
484 492 0.892755 TTAGTCTAGTGGGTGCGTGG 59.107 55.000 0.00 0.00 0.00 4.94
485 493 2.735134 GTTTTAGTCTAGTGGGTGCGTG 59.265 50.000 0.00 0.00 0.00 5.34
487 495 3.314541 AGTTTTAGTCTAGTGGGTGCG 57.685 47.619 0.00 0.00 0.00 5.34
488 496 5.791666 AGTTAGTTTTAGTCTAGTGGGTGC 58.208 41.667 0.00 0.00 0.00 5.01
489 497 8.120140 AGTAGTTAGTTTTAGTCTAGTGGGTG 57.880 38.462 0.00 0.00 0.00 4.61
490 498 7.946776 TGAGTAGTTAGTTTTAGTCTAGTGGGT 59.053 37.037 0.00 0.00 0.00 4.51
492 500 8.790718 TGTGAGTAGTTAGTTTTAGTCTAGTGG 58.209 37.037 0.00 0.00 0.00 4.00
497 505 9.028185 CGTTTTGTGAGTAGTTAGTTTTAGTCT 57.972 33.333 0.00 0.00 0.00 3.24
498 506 9.023967 TCGTTTTGTGAGTAGTTAGTTTTAGTC 57.976 33.333 0.00 0.00 0.00 2.59
499 507 8.931385 TCGTTTTGTGAGTAGTTAGTTTTAGT 57.069 30.769 0.00 0.00 0.00 2.24
502 510 8.658499 AGATCGTTTTGTGAGTAGTTAGTTTT 57.342 30.769 0.00 0.00 0.00 2.43
503 511 9.754382 TTAGATCGTTTTGTGAGTAGTTAGTTT 57.246 29.630 0.00 0.00 0.00 2.66
504 512 9.754382 TTTAGATCGTTTTGTGAGTAGTTAGTT 57.246 29.630 0.00 0.00 0.00 2.24
505 513 9.189723 GTTTAGATCGTTTTGTGAGTAGTTAGT 57.810 33.333 0.00 0.00 0.00 2.24
510 518 6.310711 GGAGGTTTAGATCGTTTTGTGAGTAG 59.689 42.308 0.00 0.00 0.00 2.57
511 519 6.014840 AGGAGGTTTAGATCGTTTTGTGAGTA 60.015 38.462 0.00 0.00 0.00 2.59
513 521 5.238583 AGGAGGTTTAGATCGTTTTGTGAG 58.761 41.667 0.00 0.00 0.00 3.51
514 522 5.223449 AGGAGGTTTAGATCGTTTTGTGA 57.777 39.130 0.00 0.00 0.00 3.58
515 523 5.929992 TGTAGGAGGTTTAGATCGTTTTGTG 59.070 40.000 0.00 0.00 0.00 3.33
516 524 5.930569 GTGTAGGAGGTTTAGATCGTTTTGT 59.069 40.000 0.00 0.00 0.00 2.83
517 525 5.350640 GGTGTAGGAGGTTTAGATCGTTTTG 59.649 44.000 0.00 0.00 0.00 2.44
522 530 2.686915 ACGGTGTAGGAGGTTTAGATCG 59.313 50.000 0.00 0.00 0.00 3.69
523 531 3.952967 AGACGGTGTAGGAGGTTTAGATC 59.047 47.826 0.00 0.00 0.00 2.75
524 532 3.978610 AGACGGTGTAGGAGGTTTAGAT 58.021 45.455 0.00 0.00 0.00 1.98
525 533 3.446442 AGACGGTGTAGGAGGTTTAGA 57.554 47.619 0.00 0.00 0.00 2.10
529 537 1.346722 CCAAAGACGGTGTAGGAGGTT 59.653 52.381 0.00 0.00 0.00 3.50
531 539 0.391263 GCCAAAGACGGTGTAGGAGG 60.391 60.000 1.54 0.00 0.00 4.30
532 540 0.320374 TGCCAAAGACGGTGTAGGAG 59.680 55.000 1.54 0.00 0.00 3.69
533 541 0.981183 ATGCCAAAGACGGTGTAGGA 59.019 50.000 1.54 0.00 0.00 2.94
534 542 1.369625 GATGCCAAAGACGGTGTAGG 58.630 55.000 0.00 0.00 0.00 3.18
535 543 1.369625 GGATGCCAAAGACGGTGTAG 58.630 55.000 0.00 0.00 0.00 2.74
536 544 0.035820 GGGATGCCAAAGACGGTGTA 60.036 55.000 0.00 0.00 0.00 2.90
537 545 1.303317 GGGATGCCAAAGACGGTGT 60.303 57.895 0.00 0.00 0.00 4.16
539 547 0.322546 GAAGGGATGCCAAAGACGGT 60.323 55.000 5.86 0.00 0.00 4.83
541 549 0.804989 GTGAAGGGATGCCAAAGACG 59.195 55.000 5.86 0.00 0.00 4.18
542 550 2.087646 GAGTGAAGGGATGCCAAAGAC 58.912 52.381 5.86 0.00 0.00 3.01
544 552 1.467920 GGAGTGAAGGGATGCCAAAG 58.532 55.000 5.86 0.00 0.00 2.77
545 553 0.039618 GGGAGTGAAGGGATGCCAAA 59.960 55.000 5.86 0.00 0.00 3.28
546 554 0.846427 AGGGAGTGAAGGGATGCCAA 60.846 55.000 5.86 0.00 0.00 4.52
550 558 3.969976 TGAGATTAGGGAGTGAAGGGATG 59.030 47.826 0.00 0.00 0.00 3.51
551 559 4.286813 TGAGATTAGGGAGTGAAGGGAT 57.713 45.455 0.00 0.00 0.00 3.85
552 560 3.776731 TGAGATTAGGGAGTGAAGGGA 57.223 47.619 0.00 0.00 0.00 4.20
553 561 3.006323 CGATGAGATTAGGGAGTGAAGGG 59.994 52.174 0.00 0.00 0.00 3.95
554 562 3.891977 TCGATGAGATTAGGGAGTGAAGG 59.108 47.826 0.00 0.00 0.00 3.46
555 563 5.242615 TCATCGATGAGATTAGGGAGTGAAG 59.757 44.000 23.99 0.00 37.52 3.02
556 564 5.140454 TCATCGATGAGATTAGGGAGTGAA 58.860 41.667 23.99 0.00 37.52 3.18
557 565 4.729868 TCATCGATGAGATTAGGGAGTGA 58.270 43.478 23.99 0.00 37.52 3.41
559 567 5.083122 ACATCATCGATGAGATTAGGGAGT 58.917 41.667 30.11 14.87 42.09 3.85
561 569 6.010219 TGTACATCATCGATGAGATTAGGGA 58.990 40.000 30.11 11.43 42.09 4.20
562 570 6.272822 TGTACATCATCGATGAGATTAGGG 57.727 41.667 30.11 16.12 42.09 3.53
564 572 6.255237 GCCATGTACATCATCGATGAGATTAG 59.745 42.308 30.11 19.32 42.09 1.73
565 573 6.101997 GCCATGTACATCATCGATGAGATTA 58.898 40.000 30.11 18.50 42.09 1.75
566 574 4.934001 GCCATGTACATCATCGATGAGATT 59.066 41.667 30.11 19.42 42.09 2.40
569 577 2.998670 GGCCATGTACATCATCGATGAG 59.001 50.000 30.11 23.20 42.09 2.90
571 579 2.740447 CTGGCCATGTACATCATCGATG 59.260 50.000 19.61 19.61 44.71 3.84
572 580 2.634453 TCTGGCCATGTACATCATCGAT 59.366 45.455 5.51 0.00 34.09 3.59
574 582 2.138320 GTCTGGCCATGTACATCATCG 58.862 52.381 5.51 0.00 34.09 3.84
575 583 2.498167 GGTCTGGCCATGTACATCATC 58.502 52.381 5.51 0.00 37.17 2.92
577 585 0.546122 GGGTCTGGCCATGTACATCA 59.454 55.000 5.51 0.21 39.65 3.07
578 586 0.532862 CGGGTCTGGCCATGTACATC 60.533 60.000 5.51 0.00 39.65 3.06
579 587 0.980754 TCGGGTCTGGCCATGTACAT 60.981 55.000 5.51 1.41 39.65 2.29
580 588 1.610967 TCGGGTCTGGCCATGTACA 60.611 57.895 5.51 0.00 39.65 2.90
581 589 1.153429 GTCGGGTCTGGCCATGTAC 60.153 63.158 5.51 5.05 39.65 2.90
582 590 2.717044 CGTCGGGTCTGGCCATGTA 61.717 63.158 5.51 0.00 39.65 2.29
583 591 4.082523 CGTCGGGTCTGGCCATGT 62.083 66.667 5.51 0.00 39.65 3.21
584 592 4.838152 CCGTCGGGTCTGGCCATG 62.838 72.222 5.51 0.00 39.65 3.66
595 603 1.157870 ACAGTTCAAGCAACCGTCGG 61.158 55.000 10.48 10.48 35.28 4.79
596 604 0.232303 GACAGTTCAAGCAACCGTCG 59.768 55.000 0.00 0.00 33.65 5.12
597 605 0.586802 GGACAGTTCAAGCAACCGTC 59.413 55.000 0.00 0.00 40.46 4.79
598 606 0.107410 TGGACAGTTCAAGCAACCGT 60.107 50.000 0.00 0.00 35.28 4.83
599 607 0.588252 CTGGACAGTTCAAGCAACCG 59.412 55.000 0.00 0.00 35.28 4.44
600 608 0.954452 CCTGGACAGTTCAAGCAACC 59.046 55.000 0.00 0.00 35.28 3.77
601 609 1.604278 GTCCTGGACAGTTCAAGCAAC 59.396 52.381 21.70 0.00 34.86 4.17
602 610 1.810031 CGTCCTGGACAGTTCAAGCAA 60.810 52.381 25.42 0.00 32.09 3.91
603 611 0.249868 CGTCCTGGACAGTTCAAGCA 60.250 55.000 25.42 0.00 32.09 3.91
604 612 0.033504 TCGTCCTGGACAGTTCAAGC 59.966 55.000 25.42 0.00 32.09 4.01
605 613 1.341531 AGTCGTCCTGGACAGTTCAAG 59.658 52.381 25.42 8.31 39.42 3.02
607 615 0.673985 CAGTCGTCCTGGACAGTTCA 59.326 55.000 25.42 1.86 39.42 3.18
608 616 0.959553 TCAGTCGTCCTGGACAGTTC 59.040 55.000 25.42 12.27 41.83 3.01
611 619 2.135933 GTTTTCAGTCGTCCTGGACAG 58.864 52.381 25.42 17.61 41.83 3.51
613 621 2.223971 TGAGTTTTCAGTCGTCCTGGAC 60.224 50.000 16.99 16.99 41.83 4.02
615 623 2.408050 CTGAGTTTTCAGTCGTCCTGG 58.592 52.381 5.29 0.00 44.74 4.45
626 634 8.246180 TGATATCAAAAGAATGCCTGAGTTTTC 58.754 33.333 1.98 0.00 0.00 2.29
627 635 8.031277 GTGATATCAAAAGAATGCCTGAGTTTT 58.969 33.333 7.07 0.00 0.00 2.43
628 636 7.177216 TGTGATATCAAAAGAATGCCTGAGTTT 59.823 33.333 7.07 0.00 0.00 2.66
631 639 6.688637 TGTGATATCAAAAGAATGCCTGAG 57.311 37.500 7.07 0.00 0.00 3.35
632 640 7.649533 AATGTGATATCAAAAGAATGCCTGA 57.350 32.000 7.07 0.00 0.00 3.86
652 660 9.950496 GGACATGACATTCTATTCCTATAATGT 57.050 33.333 0.00 0.00 43.36 2.71
683 691 6.880942 ACTTCTCATAATCCCGTAGAGTAC 57.119 41.667 0.00 0.00 0.00 2.73
687 695 8.473358 TCAAATACTTCTCATAATCCCGTAGA 57.527 34.615 0.00 0.00 0.00 2.59
745 755 6.923199 ATGGAAACTTTTCATCCACTCAAT 57.077 33.333 4.18 0.00 45.47 2.57
885 2656 1.430228 GTGTGCGAAACGGGTTTGT 59.570 52.632 0.82 0.00 32.11 2.83
914 2686 2.284625 ATGTGGGCTCAGTCCGGA 60.285 61.111 0.00 0.00 0.00 5.14
1044 2834 3.765894 TTGAGTGGCGGTGGTGGTG 62.766 63.158 0.00 0.00 0.00 4.17
1045 2835 2.748058 GATTGAGTGGCGGTGGTGGT 62.748 60.000 0.00 0.00 0.00 4.16
1046 2836 2.034066 ATTGAGTGGCGGTGGTGG 59.966 61.111 0.00 0.00 0.00 4.61
1047 2837 2.040544 GGATTGAGTGGCGGTGGTG 61.041 63.158 0.00 0.00 0.00 4.17
1048 2838 2.351276 GGATTGAGTGGCGGTGGT 59.649 61.111 0.00 0.00 0.00 4.16
1049 2839 2.819595 CGGATTGAGTGGCGGTGG 60.820 66.667 0.00 0.00 0.00 4.61
1059 2849 1.384989 GGAGGAGAGCGACGGATTGA 61.385 60.000 0.00 0.00 0.00 2.57
1080 2882 4.095400 GGGGGCAGGAGGAGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
1146 2949 4.301637 TGATCTTAAGCTTCATCGCGTA 57.698 40.909 0.00 0.00 34.40 4.42
1320 3160 0.545309 CCCTCTGGTCCTCCTGAACA 60.545 60.000 0.00 0.00 40.31 3.18
1390 3230 4.148825 ATCGACTGGGACCGCTGC 62.149 66.667 0.00 0.00 0.00 5.25
1391 3231 2.202797 CATCGACTGGGACCGCTG 60.203 66.667 0.00 0.00 0.00 5.18
1392 3232 2.680352 ACATCGACTGGGACCGCT 60.680 61.111 0.00 0.00 0.00 5.52
1393 3233 2.202756 GACATCGACTGGGACCGC 60.203 66.667 0.00 0.00 0.00 5.68
1394 3234 2.102357 CGACATCGACTGGGACCG 59.898 66.667 0.00 0.00 43.02 4.79
1395 3235 2.202756 GCGACATCGACTGGGACC 60.203 66.667 5.26 0.00 43.02 4.46
1396 3236 1.517257 CTGCGACATCGACTGGGAC 60.517 63.158 5.26 0.00 43.02 4.46
1397 3237 1.248101 TTCTGCGACATCGACTGGGA 61.248 55.000 5.26 0.00 43.02 4.37
1398 3238 0.803768 CTTCTGCGACATCGACTGGG 60.804 60.000 5.26 0.00 43.02 4.45
1399 3239 0.109086 ACTTCTGCGACATCGACTGG 60.109 55.000 5.26 0.00 43.02 4.00
1400 3240 1.263776 GACTTCTGCGACATCGACTG 58.736 55.000 5.26 1.44 43.02 3.51
1401 3241 0.171455 GGACTTCTGCGACATCGACT 59.829 55.000 5.26 0.00 43.02 4.18
1402 3242 0.171455 AGGACTTCTGCGACATCGAC 59.829 55.000 5.26 0.00 43.02 4.20
1403 3243 0.888619 AAGGACTTCTGCGACATCGA 59.111 50.000 5.26 0.00 43.02 3.59
1404 3244 1.272781 GAAGGACTTCTGCGACATCG 58.727 55.000 4.86 0.00 38.24 3.84
1418 3258 2.282958 ACCGTCCTGCGAGAAGGA 60.283 61.111 13.42 0.00 44.35 3.36
1419 3259 2.125912 CACCGTCCTGCGAGAAGG 60.126 66.667 6.27 6.27 44.77 3.46
1420 3260 2.125912 CCACCGTCCTGCGAGAAG 60.126 66.667 0.00 0.00 44.77 2.85
1421 3261 2.915659 ACCACCGTCCTGCGAGAA 60.916 61.111 0.00 0.00 44.77 2.87
1422 3262 3.680786 CACCACCGTCCTGCGAGA 61.681 66.667 0.00 0.00 44.77 4.04
1423 3263 4.742201 CCACCACCGTCCTGCGAG 62.742 72.222 0.00 0.00 44.77 5.03
1570 3509 3.041469 GCCTCTGCCCTGGGAGAAG 62.041 68.421 19.27 10.52 41.86 2.85
1571 3510 3.011517 GCCTCTGCCCTGGGAGAA 61.012 66.667 19.27 0.00 41.86 2.87
1580 3519 3.491652 GAAGAACGCGCCTCTGCC 61.492 66.667 5.73 0.94 0.00 4.85
1581 3520 2.433318 AGAAGAACGCGCCTCTGC 60.433 61.111 5.73 7.44 0.00 4.26
1582 3521 1.807573 GGAGAAGAACGCGCCTCTG 60.808 63.158 5.73 0.00 0.00 3.35
1583 3522 2.574399 GGAGAAGAACGCGCCTCT 59.426 61.111 5.73 5.61 0.00 3.69
1584 3523 2.509561 GGGAGAAGAACGCGCCTC 60.510 66.667 5.73 2.69 0.00 4.70
1585 3524 3.302347 CTGGGAGAAGAACGCGCCT 62.302 63.158 5.73 0.00 0.00 5.52
1586 3525 2.815647 CTGGGAGAAGAACGCGCC 60.816 66.667 5.73 0.00 0.00 6.53
1587 3526 2.815647 CCTGGGAGAAGAACGCGC 60.816 66.667 5.73 0.00 0.00 6.86
1588 3527 2.125512 CCCTGGGAGAAGAACGCG 60.126 66.667 7.01 3.53 0.00 6.01
1589 3528 2.436824 GCCCTGGGAGAAGAACGC 60.437 66.667 19.27 0.00 0.00 4.84
1590 3529 1.078848 CTGCCCTGGGAGAAGAACG 60.079 63.158 19.27 0.00 35.50 3.95
1591 3530 1.377856 GCTGCCCTGGGAGAAGAAC 60.378 63.158 19.27 0.00 35.50 3.01
1592 3531 2.959484 CGCTGCCCTGGGAGAAGAA 61.959 63.158 19.27 0.00 35.50 2.52
1593 3532 3.393970 CGCTGCCCTGGGAGAAGA 61.394 66.667 19.27 0.00 35.50 2.87
2091 4471 4.933400 ACTAATTACAGTAACCAACGCCAG 59.067 41.667 0.00 0.00 0.00 4.85
2134 4518 2.436417 TCTGCCTATCAAACAAGCACC 58.564 47.619 0.00 0.00 0.00 5.01
2207 4716 0.788391 GAACGCTCGTGAAACCGAAT 59.212 50.000 0.00 0.00 36.24 3.34
2208 4717 0.249155 AGAACGCTCGTGAAACCGAA 60.249 50.000 0.00 0.00 36.24 4.30
2209 4718 0.937699 CAGAACGCTCGTGAAACCGA 60.938 55.000 0.00 0.00 35.22 4.69
2210 4719 1.213094 ACAGAACGCTCGTGAAACCG 61.213 55.000 0.00 0.00 0.00 4.44
2211 4720 1.454653 GTACAGAACGCTCGTGAAACC 59.545 52.381 0.00 0.00 0.00 3.27
2215 4724 0.386858 GCTGTACAGAACGCTCGTGA 60.387 55.000 27.08 0.00 0.00 4.35
2216 4725 0.663269 TGCTGTACAGAACGCTCGTG 60.663 55.000 27.08 0.00 0.00 4.35
2223 4762 4.752101 ACTTTCAGTCATGCTGTACAGAAC 59.248 41.667 27.08 16.47 45.23 3.01
2391 5080 8.882736 CATTTAGTAGCATACAATGACTGTTGA 58.117 33.333 0.00 0.00 46.26 3.18
2400 5089 7.336679 TCACTGCAACATTTAGTAGCATACAAT 59.663 33.333 0.00 0.00 46.26 2.71
2403 5092 6.535150 TCTCACTGCAACATTTAGTAGCATAC 59.465 38.462 0.00 0.00 43.47 2.39
2404 5093 6.639563 TCTCACTGCAACATTTAGTAGCATA 58.360 36.000 0.00 0.00 34.35 3.14
2420 5109 1.018226 AGCATCGCTGTTCTCACTGC 61.018 55.000 0.00 0.00 42.86 4.40
2421 5110 1.436600 AAGCATCGCTGTTCTCACTG 58.563 50.000 0.00 0.00 39.62 3.66
2448 5137 9.817809 CACCTTCTGTAACTAGCAAATATAAGA 57.182 33.333 0.00 0.00 0.00 2.10
2449 5138 9.046296 CCACCTTCTGTAACTAGCAAATATAAG 57.954 37.037 0.00 0.00 0.00 1.73
2572 5264 1.292541 GCTTCGACGGGTCCTCTTT 59.707 57.895 0.00 0.00 0.00 2.52
2637 5329 4.006780 TGCAAGTTGTAGCTGAGATTCA 57.993 40.909 4.48 0.00 0.00 2.57
2649 5341 3.449018 TGGTTGGTACATTTGCAAGTTGT 59.551 39.130 17.77 17.77 39.30 3.32
2661 5353 2.306512 GTGGATAGGGTTGGTTGGTACA 59.693 50.000 0.00 0.00 0.00 2.90
2662 5354 2.356432 GGTGGATAGGGTTGGTTGGTAC 60.356 54.545 0.00 0.00 0.00 3.34
2817 8003 3.181487 ACACCAAAATCAGTGTGCTTGAC 60.181 43.478 0.00 0.00 45.24 3.18
2851 8038 7.362401 CCCAGTAAATGAGAGAGATTTTTGTGG 60.362 40.741 0.00 0.00 0.00 4.17
2860 8047 3.776969 ACATGCCCAGTAAATGAGAGAGA 59.223 43.478 0.00 0.00 0.00 3.10
2892 8079 2.987413 TCTGTTTAAAGCATGCACCG 57.013 45.000 21.98 5.33 0.00 4.94
3020 8215 4.177026 CTCATTAACCTGACCTGTCGAAG 58.823 47.826 0.00 0.00 0.00 3.79
3217 8493 5.709164 ACTCATGAAGAAATAGCAGCAACTT 59.291 36.000 0.00 0.00 0.00 2.66
3378 8655 2.743928 CGGACTGAACCAGCAGCC 60.744 66.667 0.00 0.00 39.51 4.85
3395 8673 5.106442 TCGGCAAAAAGAAGAAGGAAAAAC 58.894 37.500 0.00 0.00 0.00 2.43
3416 8694 3.420839 AAACAGAACTTTGTTGCCTCG 57.579 42.857 0.00 0.00 40.24 4.63
3514 8792 2.763448 AGAATACTCAGCTGGTCAGGAC 59.237 50.000 15.13 0.94 0.00 3.85
3546 8833 9.480861 TGAAAGTATCGAGGATATCTTATCCAT 57.519 33.333 14.37 4.00 40.61 3.41
3629 8916 9.232473 AGTACCTCCATCTCTTTTGTAAAAATC 57.768 33.333 0.00 0.00 0.00 2.17
3691 8978 4.124238 TCCAAAGACAACTGAACCTAACG 58.876 43.478 0.00 0.00 0.00 3.18
3791 9203 7.172532 TGAAACTAAACTCACACATATGGACAC 59.827 37.037 7.80 0.00 0.00 3.67
3820 9232 6.560253 GGTATGAACCAGCCTATATGTTTG 57.440 41.667 0.00 0.00 45.98 2.93
3929 9348 7.480760 AAAATGCTGAAAAATAAGCCCTAGA 57.519 32.000 0.00 0.00 38.71 2.43
3977 9398 3.254166 ACAAGATTGTGCATGTTCCTCAC 59.746 43.478 0.00 0.00 40.49 3.51
4001 9425 3.191162 ACGGTTGAACATTCCACATGATG 59.809 43.478 0.00 0.00 0.00 3.07
4015 9439 1.404748 TGTGTAGTGACGACGGTTGAA 59.595 47.619 1.53 0.00 0.00 2.69
4136 9566 0.734309 TACTGCCAGCATTTGCATCG 59.266 50.000 5.20 0.00 45.16 3.84
4176 9606 9.476202 AATACTGAAAGGCTTGTTAATTCAAAC 57.524 29.630 0.00 0.00 39.30 2.93
4217 9647 9.313118 GTCCTTCAGCAAAGAAAAGAAAAATAA 57.687 29.630 0.74 0.00 37.12 1.40
4318 9784 0.251653 TTCTGTCTGCTACCGGTCCT 60.252 55.000 12.40 0.00 0.00 3.85
4319 9785 0.173708 CTTCTGTCTGCTACCGGTCC 59.826 60.000 12.40 3.85 0.00 4.46
4320 9786 0.173708 CCTTCTGTCTGCTACCGGTC 59.826 60.000 12.40 0.00 0.00 4.79
4324 9826 1.153549 CGGCCTTCTGTCTGCTACC 60.154 63.158 0.00 0.00 0.00 3.18
4334 9836 0.606673 GGTTTCTTCTGCGGCCTTCT 60.607 55.000 0.00 0.00 0.00 2.85
4339 9841 1.082104 CGTTGGTTTCTTCTGCGGC 60.082 57.895 0.00 0.00 0.00 6.53
4342 9844 0.383949 TTGCCGTTGGTTTCTTCTGC 59.616 50.000 0.00 0.00 0.00 4.26
4344 9846 2.488153 GCTATTGCCGTTGGTTTCTTCT 59.512 45.455 0.00 0.00 0.00 2.85
4347 9849 1.904287 TGCTATTGCCGTTGGTTTCT 58.096 45.000 0.00 0.00 38.71 2.52
4351 9853 1.204467 CCATTTGCTATTGCCGTTGGT 59.796 47.619 0.00 0.00 38.71 3.67
4353 9855 2.937469 TCCATTTGCTATTGCCGTTG 57.063 45.000 0.00 0.00 38.71 4.10
4361 9974 2.024080 TCTTGGGCCTTCCATTTGCTAT 60.024 45.455 4.53 0.00 46.52 2.97
4401 10014 1.610086 TGGGGCCTTCCATTTGCTG 60.610 57.895 0.84 0.00 37.22 4.41
4537 10192 2.754552 TGCTGCTTCTGTTTGTTTCACT 59.245 40.909 0.00 0.00 0.00 3.41
4722 10391 4.858692 CGTTTCGATTTCATCAAGGCAATT 59.141 37.500 0.00 0.00 0.00 2.32
4738 10407 1.272490 AGGTGAATCTCTGCGTTTCGA 59.728 47.619 0.00 0.00 0.00 3.71
4739 10408 1.656095 GAGGTGAATCTCTGCGTTTCG 59.344 52.381 0.00 0.00 0.00 3.46
4740 10409 2.926838 GAGAGGTGAATCTCTGCGTTTC 59.073 50.000 0.00 0.00 43.51 2.78
4741 10410 2.966050 GAGAGGTGAATCTCTGCGTTT 58.034 47.619 0.00 0.00 43.51 3.60
4742 10411 2.663826 GAGAGGTGAATCTCTGCGTT 57.336 50.000 0.00 0.00 43.51 4.84
4777 10446 3.006247 CAGAGCAGTAAGAGAAAAGGGC 58.994 50.000 0.00 0.00 0.00 5.19
5964 11644 2.196749 CGCTCTACTGTACAGGCATTG 58.803 52.381 26.12 12.92 0.00 2.82
6051 11821 6.292919 CCGACAGATAAACAAGCCTAATTAGC 60.293 42.308 6.99 3.18 0.00 3.09
6092 11862 1.533625 GCTGATAAACCACAGGTGCA 58.466 50.000 0.00 0.00 35.34 4.57
6093 11863 0.447801 CGCTGATAAACCACAGGTGC 59.552 55.000 0.00 0.00 35.34 5.01
6094 11864 2.093306 TCGCTGATAAACCACAGGTG 57.907 50.000 0.00 0.00 35.34 4.00
6095 11865 2.851263 TTCGCTGATAAACCACAGGT 57.149 45.000 0.00 0.00 37.65 4.00
6098 11868 1.810151 GCCTTTCGCTGATAAACCACA 59.190 47.619 0.00 0.00 0.00 4.17
6110 11880 1.425428 CAGATCAACCGCCTTTCGC 59.575 57.895 0.00 0.00 36.73 4.70
6138 11908 2.567169 TCTGTACCATCCTGTGTTCCAG 59.433 50.000 0.00 0.00 41.15 3.86
6146 11916 3.379372 CAGCCAATTTCTGTACCATCCTG 59.621 47.826 0.00 0.00 0.00 3.86
6147 11917 3.624777 CAGCCAATTTCTGTACCATCCT 58.375 45.455 0.00 0.00 0.00 3.24
6157 11927 1.547472 GCTTGGGCCAGCCAATTTCT 61.547 55.000 6.23 0.00 37.98 2.52
6162 11932 2.035626 GTAGCTTGGGCCAGCCAA 59.964 61.111 19.86 2.14 41.12 4.52
6272 12042 6.989759 TCTGCTAACATTTACACTTGTTCAGA 59.010 34.615 0.00 0.00 35.79 3.27
6340 12114 1.398692 TTCAGTGTTGTTGGGCCTTC 58.601 50.000 4.53 0.00 0.00 3.46
6344 12118 8.466798 AGTTAATATAATTCAGTGTTGTTGGGC 58.533 33.333 0.00 0.00 0.00 5.36
6396 12195 6.906659 ACAAGTGATTCAATTCATCAGTGAC 58.093 36.000 0.00 0.00 34.99 3.67
6438 12237 4.756084 AGTGTGCTCAAGTAAATTCAGC 57.244 40.909 0.00 0.00 0.00 4.26
6521 12336 5.362105 TCACACTGGTTTAACCTACTGTT 57.638 39.130 15.68 0.00 39.58 3.16
6522 12337 5.362105 TTCACACTGGTTTAACCTACTGT 57.638 39.130 15.68 10.23 39.58 3.55
6523 12338 4.213482 GCTTCACACTGGTTTAACCTACTG 59.787 45.833 15.68 9.64 39.58 2.74
6524 12339 4.102681 AGCTTCACACTGGTTTAACCTACT 59.897 41.667 15.68 0.00 39.58 2.57
6546 12362 4.275936 CAGTAACCAACCTTCCAAGAACAG 59.724 45.833 0.00 0.00 0.00 3.16
6720 12545 1.961277 CAGTTCAGTTCCGCGGCTT 60.961 57.895 23.51 4.96 0.00 4.35
6816 12645 1.219124 CCACCTCATCACCCTCACG 59.781 63.158 0.00 0.00 0.00 4.35
6819 12648 1.078143 GCACCACCTCATCACCCTC 60.078 63.158 0.00 0.00 0.00 4.30
6820 12649 2.606587 GGCACCACCTCATCACCCT 61.607 63.158 0.00 0.00 34.51 4.34
6951 12786 4.033990 CTATACGAGCTTCTGTTCAGCA 57.966 45.455 0.00 0.00 39.99 4.41
6994 12829 3.923519 GTCTGTTGACCCACCGTAGGAA 61.924 54.545 0.00 0.00 44.01 3.36
7009 12844 5.354234 CACCTCTGTTAAAACACTGTCTGTT 59.646 40.000 0.00 0.00 45.68 3.16
7113 12955 4.427096 ACTTGTCTCTGTCTGTACATCG 57.573 45.455 0.00 0.00 34.37 3.84
7137 12979 5.874261 TGTGCAAAGGGAAAAAGAAGAAAAG 59.126 36.000 0.00 0.00 0.00 2.27
7257 13103 7.816945 ATTTTGATCCAATAACAAAGCTTCG 57.183 32.000 0.00 0.00 35.48 3.79
7357 13206 2.268229 GCAATGTGCACGCGTTATG 58.732 52.632 10.22 0.00 44.26 1.90
7367 13216 3.864583 TCAACAAAAGTGAAGCAATGTGC 59.135 39.130 0.00 0.00 45.46 4.57
7406 13255 7.088905 CCCCAACTACGATATATGTGAAGTAC 58.911 42.308 0.00 0.00 0.00 2.73
7415 13264 5.339477 ACTAAGCCCCCAACTACGATATAT 58.661 41.667 0.00 0.00 0.00 0.86
7453 13302 4.201871 ACACTGATTGTACCACAAACAACG 60.202 41.667 4.00 1.53 41.96 4.10
7476 13325 5.065090 CGTGCATGATATTTGAGTTTCCTCA 59.935 40.000 0.00 0.00 45.95 3.86
7477 13326 5.065218 ACGTGCATGATATTTGAGTTTCCTC 59.935 40.000 14.17 0.00 38.27 3.71
7518 13367 7.603180 TTCTGTAGCTATACATGGAGATTGT 57.397 36.000 0.00 0.00 41.05 2.71
7557 13430 9.825972 ACATATTGTTTGTTAGAATTCGAAGTG 57.174 29.630 1.32 0.00 0.00 3.16
7621 13498 3.320673 AGCAGCAACCAAGTAGAGTAC 57.679 47.619 0.00 0.00 0.00 2.73
7626 13503 5.643777 ACAAATAGTAGCAGCAACCAAGTAG 59.356 40.000 0.00 0.00 0.00 2.57
7627 13504 5.556915 ACAAATAGTAGCAGCAACCAAGTA 58.443 37.500 0.00 0.00 0.00 2.24
7628 13505 4.398319 ACAAATAGTAGCAGCAACCAAGT 58.602 39.130 0.00 0.00 0.00 3.16
7629 13506 5.376854 AACAAATAGTAGCAGCAACCAAG 57.623 39.130 0.00 0.00 0.00 3.61
7631 13508 5.278758 GGAAAACAAATAGTAGCAGCAACCA 60.279 40.000 0.00 0.00 0.00 3.67
7632 13509 5.161358 GGAAAACAAATAGTAGCAGCAACC 58.839 41.667 0.00 0.00 0.00 3.77
7636 13513 5.629079 AGTGGAAAACAAATAGTAGCAGC 57.371 39.130 0.00 0.00 0.00 5.25
7639 13516 7.766219 TCGATAGTGGAAAACAAATAGTAGC 57.234 36.000 0.00 0.00 37.40 3.58
7648 13525 3.306917 TCGCTTCGATAGTGGAAAACA 57.693 42.857 7.86 0.00 35.03 2.83
7649 13526 5.553952 CGTTATCGCTTCGATAGTGGAAAAC 60.554 44.000 8.62 4.54 46.95 2.43
7685 14894 2.490168 GGTTTTAGGAGTTGGGCCTTCA 60.490 50.000 4.53 0.00 36.96 3.02
7707 14916 3.257375 TGCTAACAGTACGTTCCAGACAT 59.743 43.478 0.00 0.00 39.14 3.06
7716 14925 3.688185 TCGAAGATCTGCTAACAGTACGT 59.312 43.478 0.00 0.00 44.77 3.57
7718 14927 5.163744 TGTCTCGAAGATCTGCTAACAGTAC 60.164 44.000 0.00 0.00 44.77 2.73
7739 14948 7.806690 TCTAGTATGTTTGTTTTCTGCATGTC 58.193 34.615 0.00 0.00 0.00 3.06
7758 14967 9.640963 GTCTTGTAATCTTCTTTTGCTCTAGTA 57.359 33.333 0.00 0.00 0.00 1.82
7851 15062 2.069273 CTGATGACACAACGAAGGTCC 58.931 52.381 0.00 0.00 0.00 4.46
7858 15069 4.997905 AAAGATGACTGATGACACAACG 57.002 40.909 0.00 0.00 0.00 4.10
7871 15142 5.751028 CGGATGGAAGAAGACTAAAGATGAC 59.249 44.000 0.00 0.00 0.00 3.06
7872 15143 5.163405 CCGGATGGAAGAAGACTAAAGATGA 60.163 44.000 0.00 0.00 37.49 2.92
7873 15144 5.053145 CCGGATGGAAGAAGACTAAAGATG 58.947 45.833 0.00 0.00 37.49 2.90
7874 15145 4.717280 ACCGGATGGAAGAAGACTAAAGAT 59.283 41.667 9.46 0.00 39.21 2.40
7875 15146 4.094476 ACCGGATGGAAGAAGACTAAAGA 58.906 43.478 9.46 0.00 39.21 2.52
7876 15147 4.160626 AGACCGGATGGAAGAAGACTAAAG 59.839 45.833 9.46 0.00 39.21 1.85
7877 15148 4.094476 AGACCGGATGGAAGAAGACTAAA 58.906 43.478 9.46 0.00 39.21 1.85
7878 15149 3.709587 AGACCGGATGGAAGAAGACTAA 58.290 45.455 9.46 0.00 39.21 2.24
7879 15150 3.383698 AGACCGGATGGAAGAAGACTA 57.616 47.619 9.46 0.00 39.21 2.59
7880 15151 2.239681 AGACCGGATGGAAGAAGACT 57.760 50.000 9.46 0.00 39.21 3.24
7881 15152 2.233922 TGAAGACCGGATGGAAGAAGAC 59.766 50.000 9.46 0.00 39.21 3.01
7884 15155 2.233922 GAGTGAAGACCGGATGGAAGAA 59.766 50.000 9.46 0.00 39.21 2.52
7885 15156 1.825474 GAGTGAAGACCGGATGGAAGA 59.175 52.381 9.46 0.00 39.21 2.87
7886 15157 1.827969 AGAGTGAAGACCGGATGGAAG 59.172 52.381 9.46 0.00 39.21 3.46
7888 15159 1.186200 CAGAGTGAAGACCGGATGGA 58.814 55.000 9.46 0.00 39.21 3.41
7889 15160 0.460987 GCAGAGTGAAGACCGGATGG 60.461 60.000 9.46 0.00 42.84 3.51
7890 15161 0.803768 CGCAGAGTGAAGACCGGATG 60.804 60.000 9.46 0.00 0.00 3.51
7892 15163 2.962569 CGCAGAGTGAAGACCGGA 59.037 61.111 9.46 0.00 0.00 5.14
7893 15164 2.811317 GCGCAGAGTGAAGACCGG 60.811 66.667 0.30 0.00 0.00 5.28
7894 15165 2.811317 GGCGCAGAGTGAAGACCG 60.811 66.667 10.83 0.00 0.00 4.79
7895 15166 1.446966 GAGGCGCAGAGTGAAGACC 60.447 63.158 10.83 0.00 0.00 3.85
7896 15167 1.446966 GGAGGCGCAGAGTGAAGAC 60.447 63.158 10.83 0.00 0.00 3.01
7993 16092 3.072622 AGCTCTAATCCCCGGGAAATTAC 59.927 47.826 26.32 13.09 34.34 1.89
8003 16102 4.595350 ACTTGATTCCTAGCTCTAATCCCC 59.405 45.833 11.14 0.00 0.00 4.81
8019 16118 4.537015 GCGCAACTTTCAGTTACTTGATT 58.463 39.130 0.30 0.00 36.03 2.57
8029 16128 2.430942 GCATGCGCGCAACTTTCAG 61.431 57.895 39.68 20.95 0.00 3.02
8039 16138 5.850653 TCTTATTGTAATATTTGCATGCGCG 59.149 36.000 14.09 0.00 42.97 6.86
8119 16221 6.038603 GGCAACTCAGCAAATCAGATAATGTA 59.961 38.462 0.00 0.00 35.83 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.