Multiple sequence alignment - TraesCS2D01G312300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G312300 chr2D 100.000 4847 0 0 1 4847 401552153 401547307 0.000000e+00 8951.0
1 TraesCS2D01G312300 chr2D 94.744 742 35 4 1 740 390402488 390401749 0.000000e+00 1151.0
2 TraesCS2D01G312300 chr2D 97.778 90 2 0 3963 4052 401548102 401548191 6.500000e-34 156.0
3 TraesCS2D01G312300 chr2D 86.517 89 9 3 3967 4055 82106464 82106379 1.440000e-15 95.3
4 TraesCS2D01G312300 chr2D 90.000 70 3 2 4209 4274 334331584 334331515 2.400000e-13 87.9
5 TraesCS2D01G312300 chr2A 93.916 2449 88 20 742 3171 538394026 538391620 0.000000e+00 3640.0
6 TraesCS2D01G312300 chr2A 92.453 742 51 5 1 740 717951385 717950647 0.000000e+00 1055.0
7 TraesCS2D01G312300 chr2A 94.958 476 16 4 3172 3646 538390659 538390191 0.000000e+00 739.0
8 TraesCS2D01G312300 chr2A 75.882 1389 240 52 979 2332 538432380 538431052 5.330000e-174 621.0
9 TraesCS2D01G312300 chr2A 88.566 516 28 12 4339 4847 538389667 538389176 8.980000e-167 597.0
10 TraesCS2D01G312300 chr2A 84.791 263 25 6 3703 3965 538390194 538389947 2.900000e-62 250.0
11 TraesCS2D01G312300 chr2A 94.872 78 4 0 4071 4148 538389932 538389855 6.590000e-24 122.0
12 TraesCS2D01G312300 chr2B 92.887 956 29 15 752 1690 475643606 475642673 0.000000e+00 1352.0
13 TraesCS2D01G312300 chr2B 96.613 679 16 1 1685 2363 475637022 475636351 0.000000e+00 1120.0
14 TraesCS2D01G312300 chr2B 88.727 479 28 8 3172 3646 475636088 475635632 3.280000e-156 562.0
15 TraesCS2D01G312300 chr2B 84.148 593 46 17 4280 4845 475635187 475634616 9.240000e-147 531.0
16 TraesCS2D01G312300 chr2B 86.842 266 19 8 3703 3965 475635635 475635383 2.860000e-72 283.0
17 TraesCS2D01G312300 chr2B 88.889 99 6 4 4050 4148 475635384 475635291 3.070000e-22 117.0
18 TraesCS2D01G312300 chr1D 95.565 744 30 3 1 742 450754945 450755687 0.000000e+00 1188.0
19 TraesCS2D01G312300 chr1D 88.462 78 9 0 1154 1231 396281225 396281148 1.440000e-15 95.3
20 TraesCS2D01G312300 chr1D 92.063 63 1 3 4215 4274 386424749 386424688 8.640000e-13 86.1
21 TraesCS2D01G312300 chr1D 88.732 71 3 4 4208 4274 386424676 386424745 1.120000e-11 82.4
22 TraesCS2D01G312300 chr3D 91.590 761 49 8 1 749 508430320 508431077 0.000000e+00 1037.0
23 TraesCS2D01G312300 chr5D 91.509 742 59 4 1 740 305584860 305584121 0.000000e+00 1018.0
24 TraesCS2D01G312300 chr5D 85.714 98 11 3 3958 4054 173753736 173753831 3.090000e-17 100.0
25 TraesCS2D01G312300 chr5A 91.200 750 55 8 1 743 666863226 666862481 0.000000e+00 1009.0
26 TraesCS2D01G312300 chr5A 86.667 90 10 2 3964 4053 649199468 649199381 1.110000e-16 99.0
27 TraesCS2D01G312300 chr5A 86.517 89 10 2 3963 4051 649199382 649199468 3.990000e-16 97.1
28 TraesCS2D01G312300 chr1A 90.897 747 62 6 1 743 14500149 14499405 0.000000e+00 998.0
29 TraesCS2D01G312300 chr1A 74.913 287 67 4 1132 1417 489236108 489236390 5.090000e-25 126.0
30 TraesCS2D01G312300 chr6D 90.701 742 65 4 1 740 445691305 445690566 0.000000e+00 985.0
31 TraesCS2D01G312300 chr6D 92.308 65 2 1 4213 4274 368756645 368756581 6.680000e-14 89.8
32 TraesCS2D01G312300 chr7D 90.508 748 62 7 2 744 506674128 506674871 0.000000e+00 979.0
33 TraesCS2D01G312300 chr7D 87.234 94 9 3 3969 4061 622164285 622164194 2.390000e-18 104.0
34 TraesCS2D01G312300 chr7D 89.157 83 7 2 3964 4046 622164205 622164285 8.580000e-18 102.0
35 TraesCS2D01G312300 chr1B 83.415 205 23 6 2634 2837 309951812 309951618 3.850000e-41 180.0
36 TraesCS2D01G312300 chr5B 86.598 97 11 2 3958 4054 184769796 184769702 6.630000e-19 106.0
37 TraesCS2D01G312300 chr5B 89.024 82 8 1 3957 4038 184769698 184769778 3.090000e-17 100.0
38 TraesCS2D01G312300 chr5B 91.489 47 3 1 1157 1202 48981006 48980960 4.050000e-06 63.9
39 TraesCS2D01G312300 chr6B 93.846 65 2 2 4211 4274 195461928 195461865 3.990000e-16 97.1
40 TraesCS2D01G312300 chr6B 92.063 63 3 2 4213 4274 49622817 49622756 2.400000e-13 87.9
41 TraesCS2D01G312300 chr4A 92.537 67 2 2 4211 4274 662287412 662287346 5.170000e-15 93.5
42 TraesCS2D01G312300 chr4D 92.188 64 2 2 4211 4274 389209250 389209190 2.400000e-13 87.9
43 TraesCS2D01G312300 chr6A 87.838 74 5 3 4208 4277 510254188 510254115 3.110000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G312300 chr2D 401547307 401552153 4846 True 8951.0 8951 100.0000 1 4847 1 chr2D.!!$R4 4846
1 TraesCS2D01G312300 chr2D 390401749 390402488 739 True 1151.0 1151 94.7440 1 740 1 chr2D.!!$R3 739
2 TraesCS2D01G312300 chr2A 538389176 538394026 4850 True 1069.6 3640 91.4206 742 4847 5 chr2A.!!$R3 4105
3 TraesCS2D01G312300 chr2A 717950647 717951385 738 True 1055.0 1055 92.4530 1 740 1 chr2A.!!$R2 739
4 TraesCS2D01G312300 chr2A 538431052 538432380 1328 True 621.0 621 75.8820 979 2332 1 chr2A.!!$R1 1353
5 TraesCS2D01G312300 chr2B 475642673 475643606 933 True 1352.0 1352 92.8870 752 1690 1 chr2B.!!$R1 938
6 TraesCS2D01G312300 chr2B 475634616 475637022 2406 True 522.6 1120 89.0438 1685 4845 5 chr2B.!!$R2 3160
7 TraesCS2D01G312300 chr1D 450754945 450755687 742 False 1188.0 1188 95.5650 1 742 1 chr1D.!!$F2 741
8 TraesCS2D01G312300 chr3D 508430320 508431077 757 False 1037.0 1037 91.5900 1 749 1 chr3D.!!$F1 748
9 TraesCS2D01G312300 chr5D 305584121 305584860 739 True 1018.0 1018 91.5090 1 740 1 chr5D.!!$R1 739
10 TraesCS2D01G312300 chr5A 666862481 666863226 745 True 1009.0 1009 91.2000 1 743 1 chr5A.!!$R2 742
11 TraesCS2D01G312300 chr1A 14499405 14500149 744 True 998.0 998 90.8970 1 743 1 chr1A.!!$R1 742
12 TraesCS2D01G312300 chr6D 445690566 445691305 739 True 985.0 985 90.7010 1 740 1 chr6D.!!$R2 739
13 TraesCS2D01G312300 chr7D 506674128 506674871 743 False 979.0 979 90.5080 2 744 1 chr7D.!!$F1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 894 0.100682 GAAGCATACCGAGCAGACGA 59.899 55.0 0.00 0.0 35.09 4.20 F
1047 1089 0.254462 TGCTACCAAATCCATCGCCA 59.746 50.0 0.00 0.0 0.00 5.69 F
2126 2202 0.609406 GGAGAGGCCTTTGGTTGGTC 60.609 60.0 6.77 0.0 0.00 4.02 F
3574 4660 0.107945 GTGCCCCAAAACAGCAAACA 60.108 50.0 0.00 0.0 38.45 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2626 2.666022 GCTGAACACCACAAACAAACAC 59.334 45.455 0.00 0.00 0.00 3.32 R
2845 2964 3.731652 TGTTCAGGCCAACATTTCAAG 57.268 42.857 5.01 0.00 31.08 3.02 R
3688 4774 0.032017 AGATACGGGGCAGTTCTCCT 60.032 55.000 0.00 0.00 0.00 3.69 R
4444 5592 0.816018 TGGTACTTGGCCAACGTGTG 60.816 55.000 16.05 7.15 32.29 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 232 4.099170 CGTCGTCCTCGAGCGGTT 62.099 66.667 6.99 0.00 46.96 4.44
308 309 2.022240 GCTCTTCCTCGATTCGGGCT 62.022 60.000 6.18 0.00 0.00 5.19
540 560 6.596106 TGTGGCGTGTATGAACTTATTTATGT 59.404 34.615 0.00 0.00 0.00 2.29
664 685 0.943359 CTGCCGCCGCAATTTTTGAA 60.943 50.000 0.47 0.00 46.66 2.69
832 859 1.067354 GTCCAAAATCTTGCAGCCCAG 60.067 52.381 0.00 0.00 0.00 4.45
833 860 0.971386 CCAAAATCTTGCAGCCCAGT 59.029 50.000 0.00 0.00 0.00 4.00
834 861 2.170166 CCAAAATCTTGCAGCCCAGTA 58.830 47.619 0.00 0.00 0.00 2.74
835 862 2.762327 CCAAAATCTTGCAGCCCAGTAT 59.238 45.455 0.00 0.00 0.00 2.12
836 863 3.181483 CCAAAATCTTGCAGCCCAGTATC 60.181 47.826 0.00 0.00 0.00 2.24
837 864 2.355010 AATCTTGCAGCCCAGTATCC 57.645 50.000 0.00 0.00 0.00 2.59
865 892 2.979130 GGAAGCATACCGAGCAGAC 58.021 57.895 0.00 0.00 0.00 3.51
866 893 0.872021 GGAAGCATACCGAGCAGACG 60.872 60.000 0.00 0.00 0.00 4.18
867 894 0.100682 GAAGCATACCGAGCAGACGA 59.899 55.000 0.00 0.00 35.09 4.20
985 1027 2.780693 CTCCCTCCCACTCTCCCA 59.219 66.667 0.00 0.00 0.00 4.37
1047 1089 0.254462 TGCTACCAAATCCATCGCCA 59.746 50.000 0.00 0.00 0.00 5.69
1050 1092 0.916086 TACCAAATCCATCGCCACCT 59.084 50.000 0.00 0.00 0.00 4.00
1062 1105 4.400251 CCACCTCCTCCTCCCGGT 62.400 72.222 0.00 0.00 0.00 5.28
1067 1110 3.742248 CTCCTCCTCCCGGTCTCCC 62.742 73.684 0.00 0.00 0.00 4.30
1553 1602 2.281208 GCTACGTGTGCAACCCCA 60.281 61.111 0.00 0.00 34.36 4.96
1612 1661 3.870274 CATGAAGGAGATCTTGCAGACA 58.130 45.455 0.00 0.00 35.50 3.41
1909 1958 1.153369 GCTCCGCCACATCAAGCTA 60.153 57.895 0.00 0.00 0.00 3.32
2126 2202 0.609406 GGAGAGGCCTTTGGTTGGTC 60.609 60.000 6.77 0.00 0.00 4.02
2128 2204 1.068352 AGAGGCCTTTGGTTGGTCCT 61.068 55.000 6.77 0.00 35.09 3.85
2364 2440 8.029642 ACAACATTTCTCTTAAGTTCATACGG 57.970 34.615 1.63 0.00 0.00 4.02
2365 2441 7.876068 ACAACATTTCTCTTAAGTTCATACGGA 59.124 33.333 1.63 0.00 0.00 4.69
2366 2442 8.383619 CAACATTTCTCTTAAGTTCATACGGAG 58.616 37.037 1.63 0.00 0.00 4.63
2396 2514 6.615617 AGTGCTAGTTAAGATATCCTCCTGA 58.384 40.000 0.00 0.00 0.00 3.86
2490 2608 8.684386 TTTTACATGTTACTTGGATCTTGTGA 57.316 30.769 2.30 0.00 0.00 3.58
2493 2611 5.702670 ACATGTTACTTGGATCTTGTGACTG 59.297 40.000 0.00 1.17 0.00 3.51
2503 2621 1.272490 TCTTGTGACTGTAGCCTTCGG 59.728 52.381 0.00 0.00 0.00 4.30
2508 2626 1.674441 TGACTGTAGCCTTCGGTATCG 59.326 52.381 0.00 0.00 37.82 2.92
2547 2665 2.798283 CAGCGTCTCCGAACAAAAGTTA 59.202 45.455 0.00 0.00 35.63 2.24
2555 2673 4.674475 TCCGAACAAAAGTTAGGTTTTGC 58.326 39.130 8.60 0.00 46.88 3.68
2595 2713 7.961326 AGTTTTGATATGGGTGATTTAGCTT 57.039 32.000 0.00 0.00 0.00 3.74
2597 2715 5.772825 TTGATATGGGTGATTTAGCTTGC 57.227 39.130 0.00 0.00 0.00 4.01
2612 2730 2.749621 AGCTTGCCTACAGAAAATTCGG 59.250 45.455 0.00 0.00 0.00 4.30
2669 2787 8.275040 AGCTTGGACTAAGAACAACCATATATT 58.725 33.333 2.22 0.00 38.76 1.28
2706 2824 8.918658 GTGTGTATTCTCAGTTACGAAATTGTA 58.081 33.333 0.00 0.00 0.00 2.41
2742 2860 7.700656 CGATAACAGTTTATCAAAATGGGGTTC 59.299 37.037 4.39 0.00 42.71 3.62
2790 2909 4.467795 TCTGAACTATGGGAACTCTGAAGG 59.532 45.833 0.00 0.00 0.00 3.46
2839 2958 3.270027 GCTTTGGCCTGAACAAGTTTTT 58.730 40.909 3.32 0.00 0.00 1.94
2947 3066 3.853355 AATGATAGCCACTCCTCAAGG 57.147 47.619 0.00 0.00 0.00 3.61
2949 3068 3.051940 TGATAGCCACTCCTCAAGGAT 57.948 47.619 0.00 0.00 44.46 3.24
2950 3069 2.968574 TGATAGCCACTCCTCAAGGATC 59.031 50.000 0.00 0.00 44.46 3.36
2962 3081 5.982356 TCCTCAAGGATCTTGTATTCACTG 58.018 41.667 7.42 0.00 39.78 3.66
2979 3098 5.401531 TCACTGAATAACCACACCTCTAC 57.598 43.478 0.00 0.00 0.00 2.59
2997 3116 7.228706 CACCTCTACACTTTGTTTATTTCACCT 59.771 37.037 0.00 0.00 0.00 4.00
3112 3235 7.229907 TGCAAGATAACATGTTCTATGCATCAT 59.770 33.333 24.98 11.05 34.32 2.45
3125 3248 7.117285 TCTATGCATCATTTCTGTCACTAGT 57.883 36.000 0.19 0.00 0.00 2.57
3152 3275 8.830580 ACAATTCAGTATGCAATGTACAGATAC 58.169 33.333 0.33 5.52 34.76 2.24
3218 4302 9.938280 TTTATACTCTTAGTTGCTATGTGTTGT 57.062 29.630 0.00 0.00 0.00 3.32
3259 4344 1.765314 CCTGGTAACCTGCTCTATGCT 59.235 52.381 0.00 0.00 43.37 3.79
3276 4361 9.314321 GCTCTATGCTTTGTAACTTCAATACTA 57.686 33.333 0.00 0.00 38.95 1.82
3369 4454 7.760794 TCAATAATTCATCACACAGCCAAATTC 59.239 33.333 0.00 0.00 0.00 2.17
3385 4470 5.782047 CCAAATTCTAGTGCATTGTTTCCA 58.218 37.500 0.00 0.00 0.00 3.53
3435 4520 8.758715 GCAAAATTATGTTAAATGATGCTCTCC 58.241 33.333 0.00 0.00 32.59 3.71
3452 4537 3.938963 CTCTCCGGCAGCACTAATTTTAA 59.061 43.478 0.00 0.00 0.00 1.52
3481 4567 6.219417 TGATGCCACCCATTATAAAAACAG 57.781 37.500 0.00 0.00 33.29 3.16
3574 4660 0.107945 GTGCCCCAAAACAGCAAACA 60.108 50.000 0.00 0.00 38.45 2.83
3618 4704 7.173218 TCGTTCAGACAAATGCTAGAAGAAATT 59.827 33.333 0.00 0.00 0.00 1.82
3629 4715 9.528489 AATGCTAGAAGAAATTAAGGTACCAAA 57.472 29.630 15.94 8.47 0.00 3.28
3642 4728 4.023291 AGGTACCAAATTACCAGCCAATG 58.977 43.478 15.94 0.00 43.73 2.82
3643 4729 3.767131 GGTACCAAATTACCAGCCAATGT 59.233 43.478 7.15 0.00 41.27 2.71
3644 4730 4.951094 GGTACCAAATTACCAGCCAATGTA 59.049 41.667 7.15 0.00 41.27 2.29
3645 4731 5.596772 GGTACCAAATTACCAGCCAATGTAT 59.403 40.000 7.15 0.00 41.27 2.29
3646 4732 6.097696 GGTACCAAATTACCAGCCAATGTATT 59.902 38.462 7.15 0.00 41.27 1.89
3647 4733 6.619329 ACCAAATTACCAGCCAATGTATTT 57.381 33.333 0.00 0.00 0.00 1.40
3648 4734 7.014988 ACCAAATTACCAGCCAATGTATTTT 57.985 32.000 0.00 0.00 0.00 1.82
3649 4735 7.457561 ACCAAATTACCAGCCAATGTATTTTT 58.542 30.769 0.00 0.00 0.00 1.94
3684 4770 7.741027 CAGGAGAACTGCATGTGAATATATT 57.259 36.000 0.00 0.00 40.97 1.28
3685 4771 8.837788 CAGGAGAACTGCATGTGAATATATTA 57.162 34.615 0.00 0.00 40.97 0.98
3686 4772 8.933807 CAGGAGAACTGCATGTGAATATATTAG 58.066 37.037 0.00 0.00 40.97 1.73
3687 4773 8.874156 AGGAGAACTGCATGTGAATATATTAGA 58.126 33.333 0.00 0.00 0.00 2.10
3688 4774 9.494271 GGAGAACTGCATGTGAATATATTAGAA 57.506 33.333 0.00 0.00 0.00 2.10
3690 4776 9.499479 AGAACTGCATGTGAATATATTAGAAGG 57.501 33.333 0.00 0.00 0.00 3.46
3691 4777 9.494271 GAACTGCATGTGAATATATTAGAAGGA 57.506 33.333 0.00 0.00 0.00 3.36
3692 4778 9.499479 AACTGCATGTGAATATATTAGAAGGAG 57.501 33.333 0.00 1.96 0.00 3.69
3693 4779 8.874156 ACTGCATGTGAATATATTAGAAGGAGA 58.126 33.333 0.00 0.00 0.00 3.71
3694 4780 9.716531 CTGCATGTGAATATATTAGAAGGAGAA 57.283 33.333 0.00 0.00 0.00 2.87
3695 4781 9.494271 TGCATGTGAATATATTAGAAGGAGAAC 57.506 33.333 0.00 0.00 0.00 3.01
3696 4782 9.717942 GCATGTGAATATATTAGAAGGAGAACT 57.282 33.333 0.00 0.00 0.00 3.01
3698 4784 9.717942 ATGTGAATATATTAGAAGGAGAACTGC 57.282 33.333 0.00 0.00 0.00 4.40
3699 4785 8.150945 TGTGAATATATTAGAAGGAGAACTGCC 58.849 37.037 0.00 0.00 0.00 4.85
3700 4786 7.604545 GTGAATATATTAGAAGGAGAACTGCCC 59.395 40.741 0.00 0.00 0.00 5.36
3701 4787 4.984146 ATATTAGAAGGAGAACTGCCCC 57.016 45.455 0.00 0.00 0.00 5.80
3715 4801 1.760613 CTGCCCCGTATCTCTTGGTTA 59.239 52.381 0.00 0.00 0.00 2.85
3724 4810 7.325694 CCCGTATCTCTTGGTTAAAGTCTTTA 58.674 38.462 0.65 0.65 37.18 1.85
3776 4865 7.776500 TCATACATTCACATGTTCAGGATGATT 59.224 33.333 9.36 0.00 41.16 2.57
3810 4899 6.352016 ACATATACTCTTACTCAGCCCATG 57.648 41.667 0.00 0.00 0.00 3.66
3812 4901 6.327626 ACATATACTCTTACTCAGCCCATGTT 59.672 38.462 0.00 0.00 0.00 2.71
3854 4943 5.840940 ATGTTGTGCGTACTTACTTTCTC 57.159 39.130 4.97 0.00 0.00 2.87
3855 4944 4.684877 TGTTGTGCGTACTTACTTTCTCA 58.315 39.130 4.97 0.00 0.00 3.27
3856 4945 4.743151 TGTTGTGCGTACTTACTTTCTCAG 59.257 41.667 4.97 0.00 0.00 3.35
3857 4946 3.909430 TGTGCGTACTTACTTTCTCAGG 58.091 45.455 4.97 0.00 0.00 3.86
3866 4955 7.498570 CGTACTTACTTTCTCAGGGACTACTAT 59.501 40.741 0.00 0.00 36.02 2.12
3867 4956 7.648039 ACTTACTTTCTCAGGGACTACTATG 57.352 40.000 0.00 0.00 36.02 2.23
3907 4996 3.068307 GCATCCTACTAGACCGTCATTGT 59.932 47.826 0.00 0.00 0.00 2.71
3927 5016 8.428063 TCATTGTTTGATTCTGGTTGGTATTTT 58.572 29.630 0.00 0.00 0.00 1.82
3931 5020 5.811399 TGATTCTGGTTGGTATTTTAGCG 57.189 39.130 0.00 0.00 0.00 4.26
3961 5050 7.925483 TGAGTAATTTGTTTGGGACTCAAAATG 59.075 33.333 1.02 0.00 45.74 2.32
3965 5054 4.846779 TGTTTGGGACTCAAAATGCTAC 57.153 40.909 1.02 0.00 45.74 3.58
3966 5055 4.469657 TGTTTGGGACTCAAAATGCTACT 58.530 39.130 1.02 0.00 45.74 2.57
3967 5056 4.518970 TGTTTGGGACTCAAAATGCTACTC 59.481 41.667 1.02 0.00 45.74 2.59
3968 5057 3.350219 TGGGACTCAAAATGCTACTCC 57.650 47.619 0.00 0.00 0.00 3.85
3969 5058 2.026262 TGGGACTCAAAATGCTACTCCC 60.026 50.000 0.00 0.00 37.05 4.30
3970 5059 2.239907 GGGACTCAAAATGCTACTCCCT 59.760 50.000 0.00 0.00 34.15 4.20
3971 5060 3.536570 GGACTCAAAATGCTACTCCCTC 58.463 50.000 0.00 0.00 0.00 4.30
3972 5061 3.536570 GACTCAAAATGCTACTCCCTCC 58.463 50.000 0.00 0.00 0.00 4.30
3973 5062 2.912956 ACTCAAAATGCTACTCCCTCCA 59.087 45.455 0.00 0.00 0.00 3.86
3974 5063 3.525199 ACTCAAAATGCTACTCCCTCCAT 59.475 43.478 0.00 0.00 0.00 3.41
3975 5064 4.018050 ACTCAAAATGCTACTCCCTCCATT 60.018 41.667 0.00 0.00 0.00 3.16
3976 5065 4.934356 TCAAAATGCTACTCCCTCCATTT 58.066 39.130 0.00 0.00 38.97 2.32
3977 5066 4.949856 TCAAAATGCTACTCCCTCCATTTC 59.050 41.667 0.00 0.00 37.02 2.17
3978 5067 3.584733 AATGCTACTCCCTCCATTTCC 57.415 47.619 0.00 0.00 0.00 3.13
3979 5068 1.965414 TGCTACTCCCTCCATTTCCA 58.035 50.000 0.00 0.00 0.00 3.53
3980 5069 2.274542 TGCTACTCCCTCCATTTCCAA 58.725 47.619 0.00 0.00 0.00 3.53
3981 5070 2.239654 TGCTACTCCCTCCATTTCCAAG 59.760 50.000 0.00 0.00 0.00 3.61
3982 5071 2.505819 GCTACTCCCTCCATTTCCAAGA 59.494 50.000 0.00 0.00 0.00 3.02
3983 5072 3.137360 GCTACTCCCTCCATTTCCAAGAT 59.863 47.826 0.00 0.00 0.00 2.40
3984 5073 4.348168 GCTACTCCCTCCATTTCCAAGATA 59.652 45.833 0.00 0.00 0.00 1.98
3985 5074 5.163195 GCTACTCCCTCCATTTCCAAGATAA 60.163 44.000 0.00 0.00 0.00 1.75
3986 5075 5.379706 ACTCCCTCCATTTCCAAGATAAG 57.620 43.478 0.00 0.00 0.00 1.73
3987 5076 4.790790 ACTCCCTCCATTTCCAAGATAAGT 59.209 41.667 0.00 0.00 0.00 2.24
3988 5077 5.116084 TCCCTCCATTTCCAAGATAAGTG 57.884 43.478 0.00 0.00 0.00 3.16
3989 5078 4.540099 TCCCTCCATTTCCAAGATAAGTGT 59.460 41.667 0.00 0.00 0.00 3.55
3990 5079 5.015178 TCCCTCCATTTCCAAGATAAGTGTT 59.985 40.000 0.00 0.00 0.00 3.32
3991 5080 5.126061 CCCTCCATTTCCAAGATAAGTGTTG 59.874 44.000 0.00 0.00 0.00 3.33
3992 5081 5.711976 CCTCCATTTCCAAGATAAGTGTTGT 59.288 40.000 0.00 0.00 0.00 3.32
3993 5082 6.349611 CCTCCATTTCCAAGATAAGTGTTGTG 60.350 42.308 0.00 0.00 0.00 3.33
3994 5083 6.303054 TCCATTTCCAAGATAAGTGTTGTGA 58.697 36.000 0.00 0.00 0.00 3.58
3995 5084 6.947733 TCCATTTCCAAGATAAGTGTTGTGAT 59.052 34.615 0.00 0.00 0.00 3.06
3996 5085 7.451255 TCCATTTCCAAGATAAGTGTTGTGATT 59.549 33.333 0.00 0.00 0.00 2.57
3997 5086 8.090214 CCATTTCCAAGATAAGTGTTGTGATTT 58.910 33.333 0.00 0.00 0.00 2.17
3998 5087 9.480053 CATTTCCAAGATAAGTGTTGTGATTTT 57.520 29.630 0.00 0.00 0.00 1.82
4001 5090 8.918202 TCCAAGATAAGTGTTGTGATTTTAGT 57.082 30.769 0.00 0.00 0.00 2.24
4002 5091 9.349713 TCCAAGATAAGTGTTGTGATTTTAGTT 57.650 29.630 0.00 0.00 0.00 2.24
4003 5092 9.612620 CCAAGATAAGTGTTGTGATTTTAGTTC 57.387 33.333 0.00 0.00 0.00 3.01
4011 5100 9.868277 AGTGTTGTGATTTTAGTTCAAATTTGA 57.132 25.926 16.91 16.91 34.92 2.69
4028 5117 9.868277 TCAAATTTGAACTAAAATCACAACACT 57.132 25.926 18.45 0.00 33.55 3.55
4042 5131 8.606040 AATCACAACACTTATTTTGGAAATGG 57.394 30.769 0.00 0.00 0.00 3.16
4043 5132 7.353414 TCACAACACTTATTTTGGAAATGGA 57.647 32.000 0.00 0.00 0.00 3.41
4044 5133 7.432869 TCACAACACTTATTTTGGAAATGGAG 58.567 34.615 0.00 0.00 0.00 3.86
4045 5134 6.646240 CACAACACTTATTTTGGAAATGGAGG 59.354 38.462 0.00 0.00 0.00 4.30
4046 5135 6.165577 CAACACTTATTTTGGAAATGGAGGG 58.834 40.000 0.00 0.00 0.00 4.30
4047 5136 5.650283 ACACTTATTTTGGAAATGGAGGGA 58.350 37.500 7.43 0.00 0.00 4.20
4048 5137 5.716703 ACACTTATTTTGGAAATGGAGGGAG 59.283 40.000 7.43 0.00 0.00 4.30
4049 5138 5.716703 CACTTATTTTGGAAATGGAGGGAGT 59.283 40.000 0.00 0.00 0.00 3.85
4050 5139 6.889722 CACTTATTTTGGAAATGGAGGGAGTA 59.110 38.462 0.00 0.00 0.00 2.59
4062 5151 8.980481 AAATGGAGGGAGTAGTTACATAATTG 57.020 34.615 0.00 0.00 0.00 2.32
4065 5154 5.992217 GGAGGGAGTAGTTACATAATTGCAG 59.008 44.000 0.00 0.00 0.00 4.41
4066 5155 6.408206 GGAGGGAGTAGTTACATAATTGCAGT 60.408 42.308 0.00 0.00 0.00 4.40
4067 5156 7.201974 GGAGGGAGTAGTTACATAATTGCAGTA 60.202 40.741 0.00 0.00 0.00 2.74
4068 5157 8.086143 AGGGAGTAGTTACATAATTGCAGTAA 57.914 34.615 0.00 0.00 0.00 2.24
4069 5158 8.204836 AGGGAGTAGTTACATAATTGCAGTAAG 58.795 37.037 0.00 0.00 0.00 2.34
4140 5229 9.229784 CATTTCATAATGCAGTCTTGTATCAAC 57.770 33.333 0.00 0.00 35.15 3.18
4163 5286 3.872771 AGCTTGTGTTTCTTTTTGCATGG 59.127 39.130 0.00 0.00 0.00 3.66
4184 5307 1.910671 ACCTTTCAGCCGGGTGTATTA 59.089 47.619 31.29 11.21 31.48 0.98
4195 5318 6.094325 CAGCCGGGTGTATTATTGTTTCTTAA 59.906 38.462 25.51 0.00 0.00 1.85
4220 5343 9.639563 AACTAGTAGACCTAATTAAGTACTCCC 57.360 37.037 3.59 0.00 0.00 4.30
4221 5344 9.012954 ACTAGTAGACCTAATTAAGTACTCCCT 57.987 37.037 3.59 0.00 0.00 4.20
4222 5345 9.506018 CTAGTAGACCTAATTAAGTACTCCCTC 57.494 40.741 0.00 0.00 0.00 4.30
4223 5346 7.296856 AGTAGACCTAATTAAGTACTCCCTCC 58.703 42.308 0.00 0.00 0.00 4.30
4224 5347 5.139001 AGACCTAATTAAGTACTCCCTCCG 58.861 45.833 0.00 0.00 0.00 4.63
4225 5348 4.876580 ACCTAATTAAGTACTCCCTCCGT 58.123 43.478 0.00 0.00 0.00 4.69
4226 5349 4.892345 ACCTAATTAAGTACTCCCTCCGTC 59.108 45.833 0.00 0.00 0.00 4.79
4227 5350 5.139001 CCTAATTAAGTACTCCCTCCGTCT 58.861 45.833 0.00 0.00 0.00 4.18
4228 5351 5.241285 CCTAATTAAGTACTCCCTCCGTCTC 59.759 48.000 0.00 0.00 0.00 3.36
4229 5352 3.726557 TTAAGTACTCCCTCCGTCTCA 57.273 47.619 0.00 0.00 0.00 3.27
4230 5353 2.599408 AAGTACTCCCTCCGTCTCAA 57.401 50.000 0.00 0.00 0.00 3.02
4231 5354 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
4232 5355 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
4233 5356 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
4234 5357 4.607239 AGTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
4235 5358 5.021458 AGTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
4236 5359 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
4237 5360 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
4238 5361 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
4239 5362 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
4240 5363 4.773674 TCCCTCCGTCTCAAAATAAGTGTA 59.226 41.667 0.00 0.00 0.00 2.90
4241 5364 4.868734 CCCTCCGTCTCAAAATAAGTGTAC 59.131 45.833 0.00 0.00 0.00 2.90
4242 5365 5.337330 CCCTCCGTCTCAAAATAAGTGTACT 60.337 44.000 0.00 0.00 0.00 2.73
4243 5366 6.127535 CCCTCCGTCTCAAAATAAGTGTACTA 60.128 42.308 0.00 0.00 0.00 1.82
4244 5367 6.750963 CCTCCGTCTCAAAATAAGTGTACTAC 59.249 42.308 0.00 0.00 0.00 2.73
4245 5368 7.218228 TCCGTCTCAAAATAAGTGTACTACA 57.782 36.000 0.00 0.00 0.00 2.74
4246 5369 7.310664 TCCGTCTCAAAATAAGTGTACTACAG 58.689 38.462 0.00 0.00 0.00 2.74
4247 5370 7.040201 TCCGTCTCAAAATAAGTGTACTACAGT 60.040 37.037 0.00 0.00 32.07 3.55
4248 5371 7.597743 CCGTCTCAAAATAAGTGTACTACAGTT 59.402 37.037 12.84 12.84 43.55 3.16
4249 5372 8.425491 CGTCTCAAAATAAGTGTACTACAGTTG 58.575 37.037 16.56 3.70 41.47 3.16
4250 5373 9.472361 GTCTCAAAATAAGTGTACTACAGTTGA 57.528 33.333 16.56 7.17 41.47 3.18
4251 5374 9.692749 TCTCAAAATAAGTGTACTACAGTTGAG 57.307 33.333 16.56 14.39 41.47 3.02
4252 5375 9.692749 CTCAAAATAAGTGTACTACAGTTGAGA 57.307 33.333 16.56 8.12 41.47 3.27
4253 5376 9.472361 TCAAAATAAGTGTACTACAGTTGAGAC 57.528 33.333 16.56 0.00 41.47 3.36
4254 5377 9.256477 CAAAATAAGTGTACTACAGTTGAGACA 57.744 33.333 16.56 0.45 41.47 3.41
4255 5378 8.813643 AAATAAGTGTACTACAGTTGAGACAC 57.186 34.615 16.56 13.13 41.47 3.67
4259 5382 7.762588 AGTGTACTACAGTTGAGACACTTAT 57.237 36.000 15.95 2.62 43.70 1.73
4260 5383 8.179509 AGTGTACTACAGTTGAGACACTTATT 57.820 34.615 15.95 2.38 43.70 1.40
4261 5384 8.639761 AGTGTACTACAGTTGAGACACTTATTT 58.360 33.333 15.95 2.13 43.70 1.40
4262 5385 9.257651 GTGTACTACAGTTGAGACACTTATTTT 57.742 33.333 13.49 0.00 35.44 1.82
4263 5386 9.256477 TGTACTACAGTTGAGACACTTATTTTG 57.744 33.333 0.00 0.00 0.00 2.44
4264 5387 7.730364 ACTACAGTTGAGACACTTATTTTGG 57.270 36.000 0.00 0.00 0.00 3.28
4265 5388 6.710744 ACTACAGTTGAGACACTTATTTTGGG 59.289 38.462 0.00 0.00 0.00 4.12
4266 5389 5.690865 ACAGTTGAGACACTTATTTTGGGA 58.309 37.500 0.00 0.00 0.00 4.37
4267 5390 5.531287 ACAGTTGAGACACTTATTTTGGGAC 59.469 40.000 0.00 0.00 0.00 4.46
4268 5391 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4269 5392 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4270 5393 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4271 5394 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4272 5395 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4273 5396 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4274 5397 1.283905 ACTTATTTTGGGACGGAGGGG 59.716 52.381 0.00 0.00 0.00 4.79
4275 5398 0.626916 TTATTTTGGGACGGAGGGGG 59.373 55.000 0.00 0.00 0.00 5.40
4276 5399 0.253254 TATTTTGGGACGGAGGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
4277 5400 1.143970 ATTTTGGGACGGAGGGGGAA 61.144 55.000 0.00 0.00 0.00 3.97
4278 5401 1.143970 TTTTGGGACGGAGGGGGAAT 61.144 55.000 0.00 0.00 0.00 3.01
4304 5427 6.588719 AACTGCAAATTAGGCATGAAGTTA 57.411 33.333 0.00 0.00 40.37 2.24
4321 5444 9.477484 CATGAAGTTATGTAGTGTATAAGACCC 57.523 37.037 0.00 0.00 0.00 4.46
4332 5455 5.655532 AGTGTATAAGACCCTGACGTATGTT 59.344 40.000 0.00 0.00 0.00 2.71
4336 5459 7.557358 TGTATAAGACCCTGACGTATGTTTAGA 59.443 37.037 0.00 0.00 0.00 2.10
4337 5460 4.985538 AGACCCTGACGTATGTTTAGAG 57.014 45.455 0.00 0.00 0.00 2.43
4343 5491 5.168569 CCTGACGTATGTTTAGAGCTGAAA 58.831 41.667 0.00 0.00 0.00 2.69
4348 5496 8.817100 TGACGTATGTTTAGAGCTGAAATATTG 58.183 33.333 0.00 0.00 0.00 1.90
4349 5497 8.718102 ACGTATGTTTAGAGCTGAAATATTGT 57.282 30.769 0.00 0.00 0.00 2.71
4354 5502 8.032952 TGTTTAGAGCTGAAATATTGTCACTG 57.967 34.615 0.00 0.00 0.00 3.66
4360 5508 5.948162 AGCTGAAATATTGTCACTGGTCAAT 59.052 36.000 0.00 0.00 36.82 2.57
4368 5516 4.371624 TGTCACTGGTCAATCCTGAAAT 57.628 40.909 0.00 0.00 38.33 2.17
4380 5528 6.145048 GTCAATCCTGAAATTCAAGCTTGTTG 59.855 38.462 25.19 17.09 31.88 3.33
4402 5550 1.795768 TCTCAACAAGTGATCACCGC 58.204 50.000 22.21 0.00 35.07 5.68
4418 5566 1.541588 ACCGCTTTTCTGCTTCAATCC 59.458 47.619 0.00 0.00 0.00 3.01
4424 5572 4.082354 GCTTTTCTGCTTCAATCCAGACAT 60.082 41.667 0.00 0.00 37.78 3.06
4427 5575 4.290711 TCTGCTTCAATCCAGACATTGA 57.709 40.909 0.00 0.00 40.36 2.57
4434 5582 7.066645 TGCTTCAATCCAGACATTGATAGAAAG 59.933 37.037 0.00 0.00 41.42 2.62
4450 5598 9.647797 TTGATAGAAAGTAAACATATCACACGT 57.352 29.630 0.00 0.00 33.73 4.49
4462 5610 0.533308 TCACACGTTGGCCAAGTACC 60.533 55.000 21.21 6.02 0.00 3.34
4471 5619 1.346395 TGGCCAAGTACCACTGTAGTG 59.654 52.381 0.61 5.05 45.23 2.74
4481 5629 1.497991 CACTGTAGTGGTGACCGTTG 58.502 55.000 4.10 0.00 42.10 4.10
4482 5630 1.117150 ACTGTAGTGGTGACCGTTGT 58.883 50.000 0.00 0.00 0.00 3.32
4485 5633 3.132646 ACTGTAGTGGTGACCGTTGTTTA 59.867 43.478 0.00 0.00 0.00 2.01
4486 5634 3.456280 TGTAGTGGTGACCGTTGTTTAC 58.544 45.455 0.00 0.00 0.00 2.01
4487 5635 2.994186 AGTGGTGACCGTTGTTTACT 57.006 45.000 0.00 0.00 0.00 2.24
4490 5643 2.542595 GTGGTGACCGTTGTTTACTCAG 59.457 50.000 0.00 0.00 0.00 3.35
4507 5661 5.444663 ACTCAGATTGCCTTGTCTTTTTC 57.555 39.130 0.00 0.00 0.00 2.29
4515 5669 9.638176 AGATTGCCTTGTCTTTTTCTATATCAT 57.362 29.630 0.00 0.00 0.00 2.45
4563 5718 6.840527 TCATGCTCATATTGAAACATCCCTA 58.159 36.000 0.00 0.00 0.00 3.53
4579 5734 8.788325 AACATCCCTAAAGTTTCATACTGTAC 57.212 34.615 0.00 0.00 37.12 2.90
4603 5758 7.703328 ACATTTCACTAACTTTTCGTGTTCAT 58.297 30.769 0.00 0.00 0.00 2.57
4604 5759 8.188139 ACATTTCACTAACTTTTCGTGTTCATT 58.812 29.630 0.00 0.00 0.00 2.57
4605 5760 9.019764 CATTTCACTAACTTTTCGTGTTCATTT 57.980 29.630 0.00 0.00 0.00 2.32
4611 5766 9.673454 ACTAACTTTTCGTGTTCATTTATTTCC 57.327 29.630 0.00 0.00 0.00 3.13
4612 5767 7.940178 AACTTTTCGTGTTCATTTATTTCCC 57.060 32.000 0.00 0.00 0.00 3.97
4613 5768 6.452242 ACTTTTCGTGTTCATTTATTTCCCC 58.548 36.000 0.00 0.00 0.00 4.81
4614 5769 6.041069 ACTTTTCGTGTTCATTTATTTCCCCA 59.959 34.615 0.00 0.00 0.00 4.96
4615 5770 5.637006 TTCGTGTTCATTTATTTCCCCAG 57.363 39.130 0.00 0.00 0.00 4.45
4616 5771 4.013728 TCGTGTTCATTTATTTCCCCAGG 58.986 43.478 0.00 0.00 0.00 4.45
4651 5806 1.196766 AGGTGCAGGTGCTCTGATGA 61.197 55.000 10.97 0.00 46.18 2.92
4774 5929 1.251251 CCTGAGAAGTTTGGCCTTGG 58.749 55.000 3.32 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 166 1.306970 AGGTAGTCCTCAGGTCCGG 59.693 63.158 0.00 0.00 40.58 5.14
540 560 4.183865 CGAGCATACATGGTTCTTCTTCA 58.816 43.478 0.00 0.00 38.85 3.02
695 716 1.693627 TTGCCACCCGTAAAATGTGT 58.306 45.000 0.00 0.00 0.00 3.72
753 776 2.097629 ACTCCTATCATCGACACACACG 59.902 50.000 0.00 0.00 0.00 4.49
812 839 0.968405 TGGGCTGCAAGATTTTGGAC 59.032 50.000 0.50 0.00 34.07 4.02
860 887 1.080230 TGCTTCTCTGCTCGTCTGC 60.080 57.895 0.00 0.00 0.00 4.26
861 888 0.038801 TGTGCTTCTCTGCTCGTCTG 60.039 55.000 0.00 0.00 0.00 3.51
862 889 0.894141 ATGTGCTTCTCTGCTCGTCT 59.106 50.000 0.00 0.00 0.00 4.18
863 890 0.997932 CATGTGCTTCTCTGCTCGTC 59.002 55.000 0.00 0.00 0.00 4.20
864 891 0.390866 CCATGTGCTTCTCTGCTCGT 60.391 55.000 0.00 0.00 0.00 4.18
865 892 1.088340 CCCATGTGCTTCTCTGCTCG 61.088 60.000 0.00 0.00 0.00 5.03
866 893 0.251354 TCCCATGTGCTTCTCTGCTC 59.749 55.000 0.00 0.00 0.00 4.26
867 894 0.917533 ATCCCATGTGCTTCTCTGCT 59.082 50.000 0.00 0.00 0.00 4.24
985 1027 2.769663 GAGAGGGTTTTGGGTGGTTTTT 59.230 45.455 0.00 0.00 0.00 1.94
1062 1105 2.257409 GAGCAGCATTTCCGGGGAGA 62.257 60.000 0.00 0.00 0.00 3.71
1067 1110 1.821332 GAGGGAGCAGCATTTCCGG 60.821 63.158 0.00 0.00 34.17 5.14
1069 1112 0.465278 GGAGAGGGAGCAGCATTTCC 60.465 60.000 0.00 0.00 0.00 3.13
1523 1572 1.582937 CGTAGCGCACGTACTCCTG 60.583 63.158 19.58 0.00 45.82 3.86
2363 2439 3.944015 TCTTAACTAGCACTCCGTACTCC 59.056 47.826 0.00 0.00 0.00 3.85
2364 2440 5.754543 ATCTTAACTAGCACTCCGTACTC 57.245 43.478 0.00 0.00 0.00 2.59
2365 2441 6.430616 GGATATCTTAACTAGCACTCCGTACT 59.569 42.308 2.05 0.00 0.00 2.73
2366 2442 6.430616 AGGATATCTTAACTAGCACTCCGTAC 59.569 42.308 2.05 0.00 0.00 3.67
2368 2444 5.386924 AGGATATCTTAACTAGCACTCCGT 58.613 41.667 2.05 0.00 0.00 4.69
2375 2493 6.902771 TGTCAGGAGGATATCTTAACTAGC 57.097 41.667 2.05 0.00 0.00 3.42
2503 2621 4.281525 ACACCACAAACAAACACGATAC 57.718 40.909 0.00 0.00 0.00 2.24
2508 2626 2.666022 GCTGAACACCACAAACAAACAC 59.334 45.455 0.00 0.00 0.00 3.32
2595 2713 4.015872 AGTTCCGAATTTTCTGTAGGCA 57.984 40.909 0.00 0.00 0.00 4.75
2597 2715 7.200455 ACAAAAAGTTCCGAATTTTCTGTAGG 58.800 34.615 6.34 0.00 0.00 3.18
2612 2730 4.869861 ACCATCACAGCAAACAAAAAGTTC 59.130 37.500 0.00 0.00 40.26 3.01
2669 2787 5.555966 TGAGAATACACACCATTGCTAACA 58.444 37.500 0.00 0.00 0.00 2.41
2706 2824 9.607988 TTGATAAACTGTTATCGGAACATATGT 57.392 29.630 1.41 1.41 45.95 2.29
2742 2860 9.607285 GAAAATAAAGTATAATGCCATACCACG 57.393 33.333 0.00 0.00 32.72 4.94
2774 2892 8.213679 CAGATTTATTCCTTCAGAGTTCCCATA 58.786 37.037 0.00 0.00 0.00 2.74
2775 2893 7.059156 CAGATTTATTCCTTCAGAGTTCCCAT 58.941 38.462 0.00 0.00 0.00 4.00
2776 2894 6.215431 TCAGATTTATTCCTTCAGAGTTCCCA 59.785 38.462 0.00 0.00 0.00 4.37
2777 2895 6.653989 TCAGATTTATTCCTTCAGAGTTCCC 58.346 40.000 0.00 0.00 0.00 3.97
2790 2909 5.360714 TGCCAAGAACCCATCAGATTTATTC 59.639 40.000 0.00 0.00 0.00 1.75
2845 2964 3.731652 TGTTCAGGCCAACATTTCAAG 57.268 42.857 5.01 0.00 31.08 3.02
2947 3066 8.391106 GTGTGGTTATTCAGTGAATACAAGATC 58.609 37.037 22.44 10.86 34.73 2.75
2949 3068 6.653320 GGTGTGGTTATTCAGTGAATACAAGA 59.347 38.462 22.44 7.81 34.73 3.02
2950 3069 6.655003 AGGTGTGGTTATTCAGTGAATACAAG 59.345 38.462 22.44 0.00 34.73 3.16
2962 3081 5.995897 ACAAAGTGTAGAGGTGTGGTTATTC 59.004 40.000 0.00 0.00 0.00 1.75
2979 3098 9.268268 TGAGTAGTAGGTGAAATAAACAAAGTG 57.732 33.333 0.00 0.00 0.00 3.16
3087 3210 6.962686 TGATGCATAGAACATGTTATCTTGC 58.037 36.000 23.69 23.69 33.86 4.01
3090 3213 9.570468 AGAAATGATGCATAGAACATGTTATCT 57.430 29.630 11.95 8.22 0.00 1.98
3112 3235 9.639601 CATACTGAATTGTACTAGTGACAGAAA 57.360 33.333 5.39 1.84 0.00 2.52
3125 3248 8.962884 ATCTGTACATTGCATACTGAATTGTA 57.037 30.769 8.90 0.00 35.12 2.41
3218 4302 6.463897 CCAGGAACTCTAACACCTTACTCAAA 60.464 42.308 0.00 0.00 34.60 2.69
3385 4470 9.502091 TGCTTTTGTTCTAATATCAGTGTTAGT 57.498 29.630 0.00 0.00 32.62 2.24
3435 4520 5.235305 ACATCTTAAAATTAGTGCTGCCG 57.765 39.130 0.00 0.00 0.00 5.69
3452 4537 2.537633 AATGGGTGGCATCAACATCT 57.462 45.000 0.00 0.00 30.63 2.90
3481 4567 4.199310 ACAGCCACCATAATGACACATAC 58.801 43.478 0.00 0.00 0.00 2.39
3585 4671 3.364366 GCATTTGTCTGAACGAACCAGAG 60.364 47.826 6.45 0.00 40.88 3.35
3618 4704 4.931027 TGGCTGGTAATTTGGTACCTTA 57.069 40.909 14.36 0.34 43.52 2.69
3660 4746 7.741027 AATATATTCACATGCAGTTCTCCTG 57.259 36.000 0.00 0.00 44.53 3.86
3661 4747 8.874156 TCTAATATATTCACATGCAGTTCTCCT 58.126 33.333 0.00 0.00 0.00 3.69
3662 4748 9.494271 TTCTAATATATTCACATGCAGTTCTCC 57.506 33.333 0.00 0.00 0.00 3.71
3664 4750 9.499479 CCTTCTAATATATTCACATGCAGTTCT 57.501 33.333 0.00 0.00 0.00 3.01
3665 4751 9.494271 TCCTTCTAATATATTCACATGCAGTTC 57.506 33.333 0.00 0.00 0.00 3.01
3666 4752 9.499479 CTCCTTCTAATATATTCACATGCAGTT 57.501 33.333 0.00 0.00 0.00 3.16
3667 4753 8.874156 TCTCCTTCTAATATATTCACATGCAGT 58.126 33.333 0.00 0.00 0.00 4.40
3668 4754 9.716531 TTCTCCTTCTAATATATTCACATGCAG 57.283 33.333 0.00 0.00 0.00 4.41
3669 4755 9.494271 GTTCTCCTTCTAATATATTCACATGCA 57.506 33.333 0.00 0.00 0.00 3.96
3670 4756 9.717942 AGTTCTCCTTCTAATATATTCACATGC 57.282 33.333 0.00 0.00 0.00 4.06
3672 4758 9.717942 GCAGTTCTCCTTCTAATATATTCACAT 57.282 33.333 0.00 0.00 0.00 3.21
3673 4759 8.150945 GGCAGTTCTCCTTCTAATATATTCACA 58.849 37.037 0.00 0.00 0.00 3.58
3674 4760 7.604545 GGGCAGTTCTCCTTCTAATATATTCAC 59.395 40.741 0.00 0.00 0.00 3.18
3675 4761 7.256691 GGGGCAGTTCTCCTTCTAATATATTCA 60.257 40.741 0.00 0.00 0.00 2.57
3676 4762 7.106890 GGGGCAGTTCTCCTTCTAATATATTC 58.893 42.308 0.00 0.00 0.00 1.75
3677 4763 6.295916 CGGGGCAGTTCTCCTTCTAATATATT 60.296 42.308 2.97 2.97 0.00 1.28
3678 4764 5.187967 CGGGGCAGTTCTCCTTCTAATATAT 59.812 44.000 0.00 0.00 0.00 0.86
3679 4765 4.527038 CGGGGCAGTTCTCCTTCTAATATA 59.473 45.833 0.00 0.00 0.00 0.86
3680 4766 3.325135 CGGGGCAGTTCTCCTTCTAATAT 59.675 47.826 0.00 0.00 0.00 1.28
3681 4767 2.698797 CGGGGCAGTTCTCCTTCTAATA 59.301 50.000 0.00 0.00 0.00 0.98
3682 4768 1.486726 CGGGGCAGTTCTCCTTCTAAT 59.513 52.381 0.00 0.00 0.00 1.73
3683 4769 0.902531 CGGGGCAGTTCTCCTTCTAA 59.097 55.000 0.00 0.00 0.00 2.10
3684 4770 0.252103 ACGGGGCAGTTCTCCTTCTA 60.252 55.000 0.00 0.00 0.00 2.10
3685 4771 0.252103 TACGGGGCAGTTCTCCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
3686 4772 0.831307 ATACGGGGCAGTTCTCCTTC 59.169 55.000 0.00 0.00 0.00 3.46
3687 4773 0.831307 GATACGGGGCAGTTCTCCTT 59.169 55.000 0.00 0.00 0.00 3.36
3688 4774 0.032017 AGATACGGGGCAGTTCTCCT 60.032 55.000 0.00 0.00 0.00 3.69
3689 4775 0.389757 GAGATACGGGGCAGTTCTCC 59.610 60.000 0.00 0.00 0.00 3.71
3690 4776 1.404843 AGAGATACGGGGCAGTTCTC 58.595 55.000 12.12 12.12 33.05 2.87
3691 4777 1.482593 CAAGAGATACGGGGCAGTTCT 59.517 52.381 0.00 0.00 0.00 3.01
3692 4778 1.473434 CCAAGAGATACGGGGCAGTTC 60.473 57.143 0.00 0.00 0.00 3.01
3693 4779 0.541863 CCAAGAGATACGGGGCAGTT 59.458 55.000 0.00 0.00 0.00 3.16
3694 4780 0.617820 ACCAAGAGATACGGGGCAGT 60.618 55.000 0.00 0.00 0.00 4.40
3695 4781 0.541863 AACCAAGAGATACGGGGCAG 59.458 55.000 0.00 0.00 0.00 4.85
3696 4782 1.868713 TAACCAAGAGATACGGGGCA 58.131 50.000 0.00 0.00 0.00 5.36
3697 4783 2.994186 TTAACCAAGAGATACGGGGC 57.006 50.000 0.00 0.00 0.00 5.80
3698 4784 4.161754 AGACTTTAACCAAGAGATACGGGG 59.838 45.833 0.00 0.00 36.21 5.73
3699 4785 5.340439 AGACTTTAACCAAGAGATACGGG 57.660 43.478 0.00 0.00 36.21 5.28
3700 4786 8.943909 ATAAAGACTTTAACCAAGAGATACGG 57.056 34.615 11.57 0.00 36.21 4.02
3794 4883 3.340814 ACAACATGGGCTGAGTAAGAG 57.659 47.619 0.00 0.00 0.00 2.85
3797 4886 3.500448 TGAACAACATGGGCTGAGTAA 57.500 42.857 0.00 0.00 0.00 2.24
3823 4912 9.595823 AGTAAGTACGCACAACATTTATATTCT 57.404 29.630 3.24 0.00 0.00 2.40
3847 4936 7.620094 ACAATACATAGTAGTCCCTGAGAAAGT 59.380 37.037 0.00 0.00 0.00 2.66
3850 4939 6.550108 GGACAATACATAGTAGTCCCTGAGAA 59.450 42.308 0.00 0.00 42.21 2.87
3851 4940 6.069331 GGACAATACATAGTAGTCCCTGAGA 58.931 44.000 0.00 0.00 42.21 3.27
3852 4941 5.833667 TGGACAATACATAGTAGTCCCTGAG 59.166 44.000 7.37 0.00 46.29 3.35
3854 4943 6.479972 TTGGACAATACATAGTAGTCCCTG 57.520 41.667 7.37 0.00 46.29 4.45
3855 4944 8.974292 ATATTGGACAATACATAGTAGTCCCT 57.026 34.615 6.89 0.00 46.29 4.20
3866 4955 6.044287 AGGATGCTGGTATATTGGACAATACA 59.956 38.462 6.89 1.13 36.24 2.29
3867 4956 6.476378 AGGATGCTGGTATATTGGACAATAC 58.524 40.000 6.89 0.00 36.24 1.89
3907 4996 6.349777 CCGCTAAAATACCAACCAGAATCAAA 60.350 38.462 0.00 0.00 0.00 2.69
3927 5016 5.124776 CCCAAACAAATTACTCATTCCGCTA 59.875 40.000 0.00 0.00 0.00 4.26
3931 5020 6.208599 TGAGTCCCAAACAAATTACTCATTCC 59.791 38.462 0.00 0.00 38.64 3.01
3961 5050 2.505819 TCTTGGAAATGGAGGGAGTAGC 59.494 50.000 0.00 0.00 0.00 3.58
3965 5054 5.128919 CACTTATCTTGGAAATGGAGGGAG 58.871 45.833 0.00 0.00 0.00 4.30
3966 5055 4.540099 ACACTTATCTTGGAAATGGAGGGA 59.460 41.667 0.00 0.00 0.00 4.20
3967 5056 4.860022 ACACTTATCTTGGAAATGGAGGG 58.140 43.478 0.00 0.00 0.00 4.30
3968 5057 5.711976 ACAACACTTATCTTGGAAATGGAGG 59.288 40.000 0.00 0.00 0.00 4.30
3969 5058 6.430925 TCACAACACTTATCTTGGAAATGGAG 59.569 38.462 0.00 0.00 0.00 3.86
3970 5059 6.303054 TCACAACACTTATCTTGGAAATGGA 58.697 36.000 0.00 0.00 0.00 3.41
3971 5060 6.573664 TCACAACACTTATCTTGGAAATGG 57.426 37.500 0.00 0.00 0.00 3.16
3972 5061 9.480053 AAAATCACAACACTTATCTTGGAAATG 57.520 29.630 0.00 0.00 0.00 2.32
3975 5064 9.349713 ACTAAAATCACAACACTTATCTTGGAA 57.650 29.630 0.00 0.00 0.00 3.53
3976 5065 8.918202 ACTAAAATCACAACACTTATCTTGGA 57.082 30.769 0.00 0.00 0.00 3.53
3977 5066 9.612620 GAACTAAAATCACAACACTTATCTTGG 57.387 33.333 0.00 0.00 0.00 3.61
3985 5074 9.868277 TCAAATTTGAACTAAAATCACAACACT 57.132 25.926 18.45 0.00 33.55 3.55
4002 5091 9.868277 AGTGTTGTGATTTTAGTTCAAATTTGA 57.132 25.926 16.91 16.91 34.92 2.69
4016 5105 9.054922 CCATTTCCAAAATAAGTGTTGTGATTT 57.945 29.630 0.00 0.00 0.00 2.17
4017 5106 8.428063 TCCATTTCCAAAATAAGTGTTGTGATT 58.572 29.630 0.00 0.00 0.00 2.57
4018 5107 7.961351 TCCATTTCCAAAATAAGTGTTGTGAT 58.039 30.769 0.00 0.00 0.00 3.06
4019 5108 7.353414 TCCATTTCCAAAATAAGTGTTGTGA 57.647 32.000 0.00 0.00 0.00 3.58
4020 5109 6.646240 CCTCCATTTCCAAAATAAGTGTTGTG 59.354 38.462 0.00 0.00 0.00 3.33
4021 5110 6.239572 CCCTCCATTTCCAAAATAAGTGTTGT 60.240 38.462 0.00 0.00 0.00 3.32
4022 5111 6.014669 TCCCTCCATTTCCAAAATAAGTGTTG 60.015 38.462 0.00 0.00 0.00 3.33
4023 5112 6.081356 TCCCTCCATTTCCAAAATAAGTGTT 58.919 36.000 0.00 0.00 0.00 3.32
4024 5113 5.650283 TCCCTCCATTTCCAAAATAAGTGT 58.350 37.500 0.00 0.00 0.00 3.55
4025 5114 5.716703 ACTCCCTCCATTTCCAAAATAAGTG 59.283 40.000 0.00 0.00 0.00 3.16
4026 5115 5.903923 ACTCCCTCCATTTCCAAAATAAGT 58.096 37.500 0.00 0.00 0.00 2.24
4027 5116 7.119387 ACTACTCCCTCCATTTCCAAAATAAG 58.881 38.462 0.00 0.00 0.00 1.73
4028 5117 7.039722 ACTACTCCCTCCATTTCCAAAATAA 57.960 36.000 0.00 0.00 0.00 1.40
4029 5118 6.652205 ACTACTCCCTCCATTTCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
4030 5119 5.536497 ACTACTCCCTCCATTTCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
4031 5120 5.333566 AACTACTCCCTCCATTTCCAAAA 57.666 39.130 0.00 0.00 0.00 2.44
4032 5121 5.311121 TGTAACTACTCCCTCCATTTCCAAA 59.689 40.000 0.00 0.00 0.00 3.28
4033 5122 4.847512 TGTAACTACTCCCTCCATTTCCAA 59.152 41.667 0.00 0.00 0.00 3.53
4034 5123 4.431378 TGTAACTACTCCCTCCATTTCCA 58.569 43.478 0.00 0.00 0.00 3.53
4035 5124 5.632034 ATGTAACTACTCCCTCCATTTCC 57.368 43.478 0.00 0.00 0.00 3.13
4036 5125 9.057089 CAATTATGTAACTACTCCCTCCATTTC 57.943 37.037 0.00 0.00 0.00 2.17
4037 5126 7.502561 GCAATTATGTAACTACTCCCTCCATTT 59.497 37.037 0.00 0.00 0.00 2.32
4038 5127 6.998673 GCAATTATGTAACTACTCCCTCCATT 59.001 38.462 0.00 0.00 0.00 3.16
4039 5128 6.101150 TGCAATTATGTAACTACTCCCTCCAT 59.899 38.462 0.00 0.00 0.00 3.41
4040 5129 5.427157 TGCAATTATGTAACTACTCCCTCCA 59.573 40.000 0.00 0.00 0.00 3.86
4041 5130 5.925509 TGCAATTATGTAACTACTCCCTCC 58.074 41.667 0.00 0.00 0.00 4.30
4042 5131 6.583562 ACTGCAATTATGTAACTACTCCCTC 58.416 40.000 0.00 0.00 0.00 4.30
4043 5132 6.561519 ACTGCAATTATGTAACTACTCCCT 57.438 37.500 0.00 0.00 0.00 4.20
4044 5133 7.985752 ACTTACTGCAATTATGTAACTACTCCC 59.014 37.037 0.00 0.00 0.00 4.30
4045 5134 8.818057 CACTTACTGCAATTATGTAACTACTCC 58.182 37.037 0.00 0.00 0.00 3.85
4046 5135 9.367444 ACACTTACTGCAATTATGTAACTACTC 57.633 33.333 0.00 0.00 0.00 2.59
4047 5136 9.720769 AACACTTACTGCAATTATGTAACTACT 57.279 29.630 0.00 0.00 0.00 2.57
4050 5139 9.720769 ACTAACACTTACTGCAATTATGTAACT 57.279 29.630 0.00 0.00 0.00 2.24
4121 5210 5.491070 AGCTGTTGATACAAGACTGCATTA 58.509 37.500 7.21 0.00 39.68 1.90
4133 5222 7.612266 CAAAAAGAAACACAAGCTGTTGATAC 58.388 34.615 1.88 0.00 42.70 2.24
4140 5229 4.260456 CCATGCAAAAAGAAACACAAGCTG 60.260 41.667 0.00 0.00 0.00 4.24
4152 5275 3.062042 GCTGAAAGGTCCATGCAAAAAG 58.938 45.455 0.00 0.00 0.00 2.27
4157 5280 1.675310 CGGCTGAAAGGTCCATGCA 60.675 57.895 0.00 0.00 0.00 3.96
4158 5281 2.409870 CCGGCTGAAAGGTCCATGC 61.410 63.158 0.00 0.00 0.00 4.06
4163 5286 0.252197 ATACACCCGGCTGAAAGGTC 59.748 55.000 3.11 0.00 0.00 3.85
4195 5318 9.012954 AGGGAGTACTTAATTAGGTCTACTAGT 57.987 37.037 3.13 0.00 32.16 2.57
4207 5330 4.607239 TGAGACGGAGGGAGTACTTAATT 58.393 43.478 0.00 0.00 0.00 1.40
4213 5336 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
4215 5338 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
4217 5340 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4219 5342 5.721232 AGTACACTTATTTTGAGACGGAGG 58.279 41.667 0.00 0.00 0.00 4.30
4220 5343 7.310664 TGTAGTACACTTATTTTGAGACGGAG 58.689 38.462 0.00 0.00 0.00 4.63
4221 5344 7.040201 ACTGTAGTACACTTATTTTGAGACGGA 60.040 37.037 0.00 0.00 0.00 4.69
4222 5345 7.088905 ACTGTAGTACACTTATTTTGAGACGG 58.911 38.462 0.00 0.00 0.00 4.79
4223 5346 8.425491 CAACTGTAGTACACTTATTTTGAGACG 58.575 37.037 0.00 0.00 0.00 4.18
4224 5347 9.472361 TCAACTGTAGTACACTTATTTTGAGAC 57.528 33.333 0.00 0.00 0.00 3.36
4225 5348 9.692749 CTCAACTGTAGTACACTTATTTTGAGA 57.307 33.333 16.19 2.72 38.90 3.27
4226 5349 9.692749 TCTCAACTGTAGTACACTTATTTTGAG 57.307 33.333 0.00 10.11 38.26 3.02
4227 5350 9.472361 GTCTCAACTGTAGTACACTTATTTTGA 57.528 33.333 0.00 1.79 0.00 2.69
4228 5351 9.256477 TGTCTCAACTGTAGTACACTTATTTTG 57.744 33.333 0.00 0.00 0.00 2.44
4229 5352 9.257651 GTGTCTCAACTGTAGTACACTTATTTT 57.742 33.333 0.00 0.00 35.50 1.82
4230 5353 8.639761 AGTGTCTCAACTGTAGTACACTTATTT 58.360 33.333 10.85 0.00 43.63 1.40
4231 5354 8.179509 AGTGTCTCAACTGTAGTACACTTATT 57.820 34.615 10.85 0.00 43.63 1.40
4232 5355 7.762588 AGTGTCTCAACTGTAGTACACTTAT 57.237 36.000 10.85 0.00 43.63 1.73
4235 5358 7.762588 ATAAGTGTCTCAACTGTAGTACACT 57.237 36.000 10.85 10.85 46.95 3.55
4236 5359 8.813643 AAATAAGTGTCTCAACTGTAGTACAC 57.186 34.615 0.00 7.41 37.96 2.90
4237 5360 9.256477 CAAAATAAGTGTCTCAACTGTAGTACA 57.744 33.333 2.36 2.36 0.00 2.90
4238 5361 8.709646 CCAAAATAAGTGTCTCAACTGTAGTAC 58.290 37.037 0.00 0.00 0.00 2.73
4239 5362 7.876068 CCCAAAATAAGTGTCTCAACTGTAGTA 59.124 37.037 0.00 0.00 0.00 1.82
4240 5363 6.710744 CCCAAAATAAGTGTCTCAACTGTAGT 59.289 38.462 0.00 0.00 0.00 2.73
4241 5364 6.934645 TCCCAAAATAAGTGTCTCAACTGTAG 59.065 38.462 0.00 0.00 0.00 2.74
4242 5365 6.708949 GTCCCAAAATAAGTGTCTCAACTGTA 59.291 38.462 0.00 0.00 0.00 2.74
4243 5366 5.531287 GTCCCAAAATAAGTGTCTCAACTGT 59.469 40.000 0.00 0.00 0.00 3.55
4244 5367 5.334105 CGTCCCAAAATAAGTGTCTCAACTG 60.334 44.000 0.00 0.00 0.00 3.16
4245 5368 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4246 5369 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4247 5370 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4248 5371 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4249 5372 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4250 5373 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4251 5374 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4252 5375 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4253 5376 2.365582 CCCTCCGTCCCAAAATAAGTG 58.634 52.381 0.00 0.00 0.00 3.16
4254 5377 1.283905 CCCCTCCGTCCCAAAATAAGT 59.716 52.381 0.00 0.00 0.00 2.24
4255 5378 1.409661 CCCCCTCCGTCCCAAAATAAG 60.410 57.143 0.00 0.00 0.00 1.73
4256 5379 0.626916 CCCCCTCCGTCCCAAAATAA 59.373 55.000 0.00 0.00 0.00 1.40
4257 5380 0.253254 TCCCCCTCCGTCCCAAAATA 60.253 55.000 0.00 0.00 0.00 1.40
4258 5381 1.143970 TTCCCCCTCCGTCCCAAAAT 61.144 55.000 0.00 0.00 0.00 1.82
4259 5382 1.143970 ATTCCCCCTCCGTCCCAAAA 61.144 55.000 0.00 0.00 0.00 2.44
4260 5383 1.542881 ATTCCCCCTCCGTCCCAAA 60.543 57.895 0.00 0.00 0.00 3.28
4261 5384 2.126372 ATTCCCCCTCCGTCCCAA 59.874 61.111 0.00 0.00 0.00 4.12
4262 5385 2.690881 CATTCCCCCTCCGTCCCA 60.691 66.667 0.00 0.00 0.00 4.37
4263 5386 1.568118 TTTCATTCCCCCTCCGTCCC 61.568 60.000 0.00 0.00 0.00 4.46
4264 5387 0.393944 GTTTCATTCCCCCTCCGTCC 60.394 60.000 0.00 0.00 0.00 4.79
4265 5388 0.618981 AGTTTCATTCCCCCTCCGTC 59.381 55.000 0.00 0.00 0.00 4.79
4266 5389 0.328258 CAGTTTCATTCCCCCTCCGT 59.672 55.000 0.00 0.00 0.00 4.69
4267 5390 1.032114 GCAGTTTCATTCCCCCTCCG 61.032 60.000 0.00 0.00 0.00 4.63
4268 5391 0.039618 TGCAGTTTCATTCCCCCTCC 59.960 55.000 0.00 0.00 0.00 4.30
4269 5392 1.923356 TTGCAGTTTCATTCCCCCTC 58.077 50.000 0.00 0.00 0.00 4.30
4270 5393 2.397044 TTTGCAGTTTCATTCCCCCT 57.603 45.000 0.00 0.00 0.00 4.79
4271 5394 3.701205 AATTTGCAGTTTCATTCCCCC 57.299 42.857 0.00 0.00 0.00 5.40
4272 5395 4.758688 CCTAATTTGCAGTTTCATTCCCC 58.241 43.478 0.00 0.00 0.00 4.81
4273 5396 4.183865 GCCTAATTTGCAGTTTCATTCCC 58.816 43.478 0.00 0.00 0.00 3.97
4274 5397 4.819769 TGCCTAATTTGCAGTTTCATTCC 58.180 39.130 0.00 0.00 34.05 3.01
4275 5398 6.101332 TCATGCCTAATTTGCAGTTTCATTC 58.899 36.000 8.14 0.00 42.92 2.67
4276 5399 6.040209 TCATGCCTAATTTGCAGTTTCATT 57.960 33.333 8.14 0.00 42.92 2.57
4277 5400 5.664294 TCATGCCTAATTTGCAGTTTCAT 57.336 34.783 8.14 0.00 42.92 2.57
4278 5401 5.010922 ACTTCATGCCTAATTTGCAGTTTCA 59.989 36.000 8.14 0.00 42.92 2.69
4304 5427 5.198965 ACGTCAGGGTCTTATACACTACAT 58.801 41.667 0.00 0.00 41.08 2.29
4321 5444 6.893958 ATTTCAGCTCTAAACATACGTCAG 57.106 37.500 0.00 0.00 0.00 3.51
4332 5455 6.711277 ACCAGTGACAATATTTCAGCTCTAA 58.289 36.000 0.00 0.00 0.00 2.10
4336 5459 4.910195 TGACCAGTGACAATATTTCAGCT 58.090 39.130 0.00 0.00 0.00 4.24
4337 5460 5.627499 TTGACCAGTGACAATATTTCAGC 57.373 39.130 0.00 0.00 0.00 4.26
4343 5491 5.698741 TCAGGATTGACCAGTGACAATAT 57.301 39.130 12.87 5.49 37.06 1.28
4348 5496 4.761739 TGAATTTCAGGATTGACCAGTGAC 59.238 41.667 0.00 0.00 42.04 3.67
4349 5497 4.984295 TGAATTTCAGGATTGACCAGTGA 58.016 39.130 0.00 0.00 42.04 3.41
4354 5502 5.397142 AAGCTTGAATTTCAGGATTGACC 57.603 39.130 10.71 0.00 30.85 4.02
4360 5508 5.596836 AACAACAAGCTTGAATTTCAGGA 57.403 34.783 32.50 0.00 0.00 3.86
4380 5528 3.607078 GCGGTGATCACTTGTTGAGAAAC 60.607 47.826 24.50 3.29 37.77 2.78
4402 5550 5.640189 ATGTCTGGATTGAAGCAGAAAAG 57.360 39.130 0.00 0.00 0.00 2.27
4424 5572 9.647797 ACGTGTGATATGTTTACTTTCTATCAA 57.352 29.630 0.00 0.00 32.33 2.57
4427 5575 8.879759 CCAACGTGTGATATGTTTACTTTCTAT 58.120 33.333 0.00 0.00 36.38 1.98
4434 5582 3.437395 TGGCCAACGTGTGATATGTTTAC 59.563 43.478 0.61 0.00 36.38 2.01
4442 5590 1.519408 GTACTTGGCCAACGTGTGAT 58.481 50.000 16.05 0.00 0.00 3.06
4444 5592 0.816018 TGGTACTTGGCCAACGTGTG 60.816 55.000 16.05 7.15 32.29 3.82
4445 5593 0.816421 GTGGTACTTGGCCAACGTGT 60.816 55.000 16.05 14.16 37.81 4.49
4449 5597 2.224450 ACTACAGTGGTACTTGGCCAAC 60.224 50.000 16.05 5.65 37.81 3.77
4450 5598 2.051692 ACTACAGTGGTACTTGGCCAA 58.948 47.619 19.25 19.25 37.81 4.52
4462 5610 1.202486 ACAACGGTCACCACTACAGTG 60.202 52.381 2.23 2.23 45.23 3.66
4471 5619 3.102052 TCTGAGTAAACAACGGTCACC 57.898 47.619 0.00 0.00 0.00 4.02
4477 5625 4.024048 ACAAGGCAATCTGAGTAAACAACG 60.024 41.667 0.00 0.00 0.00 4.10
4481 5629 5.948992 AAGACAAGGCAATCTGAGTAAAC 57.051 39.130 0.00 0.00 0.00 2.01
4482 5630 6.959639 AAAAGACAAGGCAATCTGAGTAAA 57.040 33.333 0.00 0.00 0.00 2.01
4485 5633 5.136105 AGAAAAAGACAAGGCAATCTGAGT 58.864 37.500 0.00 0.00 0.00 3.41
4486 5634 5.702349 AGAAAAAGACAAGGCAATCTGAG 57.298 39.130 0.00 0.00 0.00 3.35
4487 5635 9.113838 GATATAGAAAAAGACAAGGCAATCTGA 57.886 33.333 0.00 0.00 0.00 3.27
4490 5643 9.674824 CATGATATAGAAAAAGACAAGGCAATC 57.325 33.333 0.00 0.00 0.00 2.67
4507 5661 7.786178 TTCGGACAAGGAAAACATGATATAG 57.214 36.000 0.00 0.00 0.00 1.31
4515 5669 2.690497 TGCATTTCGGACAAGGAAAACA 59.310 40.909 0.00 0.00 37.00 2.83
4579 5734 8.560576 AATGAACACGAAAAGTTAGTGAAATG 57.439 30.769 8.02 0.00 39.04 2.32
4594 5749 4.013728 CCTGGGGAAATAAATGAACACGA 58.986 43.478 0.00 0.00 0.00 4.35
4603 5758 7.532199 AGTTCTAAGAAACCTGGGGAAATAAA 58.468 34.615 0.00 0.00 0.00 1.40
4604 5759 7.098845 AGTTCTAAGAAACCTGGGGAAATAA 57.901 36.000 0.00 0.00 0.00 1.40
4605 5760 6.713731 AGTTCTAAGAAACCTGGGGAAATA 57.286 37.500 0.00 0.00 0.00 1.40
4606 5761 5.600669 AGTTCTAAGAAACCTGGGGAAAT 57.399 39.130 0.00 0.00 0.00 2.17
4607 5762 6.126420 TGTTAGTTCTAAGAAACCTGGGGAAA 60.126 38.462 0.00 0.00 0.00 3.13
4608 5763 5.370289 TGTTAGTTCTAAGAAACCTGGGGAA 59.630 40.000 0.00 0.00 0.00 3.97
4609 5764 4.909088 TGTTAGTTCTAAGAAACCTGGGGA 59.091 41.667 0.00 0.00 0.00 4.81
4610 5765 5.237236 TGTTAGTTCTAAGAAACCTGGGG 57.763 43.478 0.00 0.00 0.00 4.96
4611 5766 5.221864 ACCTGTTAGTTCTAAGAAACCTGGG 60.222 44.000 0.00 0.00 0.00 4.45
4612 5767 5.701290 CACCTGTTAGTTCTAAGAAACCTGG 59.299 44.000 0.00 0.00 0.00 4.45
4613 5768 5.179555 GCACCTGTTAGTTCTAAGAAACCTG 59.820 44.000 0.00 0.00 0.00 4.00
4614 5769 5.163237 TGCACCTGTTAGTTCTAAGAAACCT 60.163 40.000 0.00 0.00 0.00 3.50
4615 5770 5.061179 TGCACCTGTTAGTTCTAAGAAACC 58.939 41.667 0.00 0.00 0.00 3.27
4616 5771 5.179555 CCTGCACCTGTTAGTTCTAAGAAAC 59.820 44.000 0.00 0.00 0.00 2.78
4651 5806 4.965532 ACTACCATCATCAGCTTCCTAAGT 59.034 41.667 0.00 0.00 0.00 2.24
4774 5929 2.206750 TGGTTCGTCAGCAAACTACAC 58.793 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.