Multiple sequence alignment - TraesCS2D01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G312000 chr2D 100.000 5848 0 0 1 5848 401291518 401285671 0.000000e+00 10800.0
1 TraesCS2D01G312000 chr2D 89.286 784 64 11 2 776 180084726 180085498 0.000000e+00 965.0
2 TraesCS2D01G312000 chr2D 97.525 202 4 1 2400 2600 632583346 632583145 1.560000e-90 344.0
3 TraesCS2D01G312000 chr2D 95.588 68 1 2 1514 1579 32990644 32990577 2.230000e-19 108.0
4 TraesCS2D01G312000 chr2B 92.527 1927 96 18 3939 5848 475303151 475301256 0.000000e+00 2717.0
5 TraesCS2D01G312000 chr2B 97.330 1161 28 3 2598 3757 475304378 475303220 0.000000e+00 1969.0
6 TraesCS2D01G312000 chr2B 94.704 812 39 2 1578 2388 475305221 475304413 0.000000e+00 1258.0
7 TraesCS2D01G312000 chr2B 95.467 728 24 2 791 1515 475305941 475305220 0.000000e+00 1153.0
8 TraesCS2D01G312000 chr2B 75.978 179 27 7 5163 5339 61289172 61289008 1.750000e-10 78.7
9 TraesCS2D01G312000 chr2B 75.956 183 25 9 5163 5343 61360696 61360531 6.280000e-10 76.8
10 TraesCS2D01G312000 chr2A 97.446 1214 26 5 2598 3807 537966219 537965007 0.000000e+00 2065.0
11 TraesCS2D01G312000 chr2A 92.340 953 48 15 3939 4872 537964624 537963678 0.000000e+00 1332.0
12 TraesCS2D01G312000 chr2A 95.690 812 31 4 1578 2388 537967062 537966254 0.000000e+00 1303.0
13 TraesCS2D01G312000 chr2A 94.149 752 23 4 776 1515 537967803 537967061 0.000000e+00 1125.0
14 TraesCS2D01G312000 chr6D 90.446 785 67 6 2 778 412057243 412058027 0.000000e+00 1027.0
15 TraesCS2D01G312000 chr6D 94.521 73 2 1 1514 1584 18118451 18118523 1.720000e-20 111.0
16 TraesCS2D01G312000 chr7B 90.153 782 69 6 5 778 581380825 581380044 0.000000e+00 1011.0
17 TraesCS2D01G312000 chr7B 97.512 201 4 1 2401 2600 521120872 521121072 5.610000e-90 342.0
18 TraesCS2D01G312000 chr7B 82.338 385 54 12 1060 1437 71175481 71175104 7.310000e-84 322.0
19 TraesCS2D01G312000 chr7B 81.667 180 31 2 3455 3633 71173089 71172911 1.310000e-31 148.0
20 TraesCS2D01G312000 chr3A 90.064 785 69 6 2 778 729703307 729702524 0.000000e+00 1009.0
21 TraesCS2D01G312000 chr3A 95.567 203 8 1 2401 2602 30752669 30752871 2.030000e-84 324.0
22 TraesCS2D01G312000 chr3A 100.000 28 0 0 5163 5190 715197426 715197399 1.100000e-02 52.8
23 TraesCS2D01G312000 chr4B 89.898 782 67 6 5 776 75536113 75535334 0.000000e+00 996.0
24 TraesCS2D01G312000 chr4B 95.261 211 7 3 2399 2608 59978032 59977824 1.210000e-86 331.0
25 TraesCS2D01G312000 chr4B 86.957 69 6 3 5163 5230 631837091 631837157 2.260000e-09 75.0
26 TraesCS2D01G312000 chr5B 89.646 792 64 12 2 779 706762651 706763438 0.000000e+00 992.0
27 TraesCS2D01G312000 chr5B 94.286 70 3 1 1515 1583 678655985 678656054 8.010000e-19 106.0
28 TraesCS2D01G312000 chr3B 89.682 785 66 13 5 779 3136035 3135256 0.000000e+00 987.0
29 TraesCS2D01G312000 chr3B 96.098 205 6 2 2401 2604 732155033 732155236 3.380000e-87 333.0
30 TraesCS2D01G312000 chr3B 87.037 54 6 1 5172 5224 40199533 40199480 6.330000e-05 60.2
31 TraesCS2D01G312000 chr7D 89.554 785 71 8 2 778 250349541 250350322 0.000000e+00 985.0
32 TraesCS2D01G312000 chr7D 89.272 783 73 7 2 776 212212273 212213052 0.000000e+00 970.0
33 TraesCS2D01G312000 chr7D 97.512 201 4 1 2402 2601 28070999 28071199 5.610000e-90 342.0
34 TraesCS2D01G312000 chr7D 83.616 354 50 7 1087 1437 111619905 111619557 5.650000e-85 326.0
35 TraesCS2D01G312000 chr7D 82.222 180 30 2 3455 3633 111617508 111617330 2.820000e-33 154.0
36 TraesCS2D01G312000 chr7D 94.521 73 1 2 1510 1579 18437352 18437280 6.200000e-20 110.0
37 TraesCS2D01G312000 chr5D 98.529 204 3 0 2401 2604 256208061 256207858 1.550000e-95 361.0
38 TraesCS2D01G312000 chr5D 95.522 67 2 1 1514 1579 446570688 446570622 8.010000e-19 106.0
39 TraesCS2D01G312000 chr6B 96.585 205 6 1 2400 2603 548388426 548388630 7.260000e-89 339.0
40 TraesCS2D01G312000 chr6B 96.552 203 6 1 2401 2602 718624594 718624392 9.390000e-88 335.0
41 TraesCS2D01G312000 chr3D 96.970 66 2 0 1514 1579 129694725 129694660 1.720000e-20 111.0
42 TraesCS2D01G312000 chr3D 93.333 75 0 4 1514 1583 341026240 341026314 8.010000e-19 106.0
43 TraesCS2D01G312000 chr1D 94.444 72 1 2 1514 1582 474820678 474820749 2.230000e-19 108.0
44 TraesCS2D01G312000 chr5A 95.522 67 2 1 1514 1580 663583308 663583373 8.010000e-19 106.0
45 TraesCS2D01G312000 chr5A 89.474 57 5 1 5165 5220 673183253 673183309 2.920000e-08 71.3
46 TraesCS2D01G312000 chr4D 88.525 61 6 1 5163 5222 493906653 493906713 8.130000e-09 73.1
47 TraesCS2D01G312000 chr4D 86.885 61 6 2 5163 5222 120075366 120075307 3.780000e-07 67.6
48 TraesCS2D01G312000 chr6A 86.667 60 7 1 5163 5221 1742842 1742901 1.360000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G312000 chr2D 401285671 401291518 5847 True 10800.00 10800 100.00000 1 5848 1 chr2D.!!$R2 5847
1 TraesCS2D01G312000 chr2D 180084726 180085498 772 False 965.00 965 89.28600 2 776 1 chr2D.!!$F1 774
2 TraesCS2D01G312000 chr2B 475301256 475305941 4685 True 1774.25 2717 95.00700 791 5848 4 chr2B.!!$R3 5057
3 TraesCS2D01G312000 chr2A 537963678 537967803 4125 True 1456.25 2065 94.90625 776 4872 4 chr2A.!!$R1 4096
4 TraesCS2D01G312000 chr6D 412057243 412058027 784 False 1027.00 1027 90.44600 2 778 1 chr6D.!!$F2 776
5 TraesCS2D01G312000 chr7B 581380044 581380825 781 True 1011.00 1011 90.15300 5 778 1 chr7B.!!$R1 773
6 TraesCS2D01G312000 chr7B 71172911 71175481 2570 True 235.00 322 82.00250 1060 3633 2 chr7B.!!$R2 2573
7 TraesCS2D01G312000 chr3A 729702524 729703307 783 True 1009.00 1009 90.06400 2 778 1 chr3A.!!$R2 776
8 TraesCS2D01G312000 chr4B 75535334 75536113 779 True 996.00 996 89.89800 5 776 1 chr4B.!!$R2 771
9 TraesCS2D01G312000 chr5B 706762651 706763438 787 False 992.00 992 89.64600 2 779 1 chr5B.!!$F2 777
10 TraesCS2D01G312000 chr3B 3135256 3136035 779 True 987.00 987 89.68200 5 779 1 chr3B.!!$R1 774
11 TraesCS2D01G312000 chr7D 250349541 250350322 781 False 985.00 985 89.55400 2 778 1 chr7D.!!$F3 776
12 TraesCS2D01G312000 chr7D 212212273 212213052 779 False 970.00 970 89.27200 2 776 1 chr7D.!!$F2 774
13 TraesCS2D01G312000 chr7D 111617330 111619905 2575 True 240.00 326 82.91900 1087 3633 2 chr7D.!!$R2 2546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 856 0.466189 CCCTCCCAATCCAATCCACG 60.466 60.0 0.00 0.0 0.00 4.94 F
1311 1339 0.258194 AGATACGGGGGTTCTCGTCT 59.742 55.0 0.00 0.0 40.31 4.18 F
2437 3022 0.176910 GAGGTGCTTAGGAGAGGTGC 59.823 60.0 0.00 0.0 0.00 5.01 F
3925 5183 0.251165 GTTCCCCTGGTTAGCTGCAA 60.251 55.0 1.02 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 3003 0.176910 GCACCTCTCCTAAGCACCTC 59.823 60.0 0.00 0.0 0.0 3.85 R
3079 3669 0.249868 CTTCAGTTCCACCAGCGACA 60.250 55.0 0.00 0.0 0.0 4.35 R
4137 5417 0.323178 CTGGCAGGCAAGGAAGTGAT 60.323 55.0 6.61 0.0 0.0 3.06 R
5098 6413 0.044244 TACAGGAAAGGGAGGGGGAG 59.956 60.0 0.00 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.796290 GCAACTATGGCTACTATCTTGCGA 60.796 45.833 0.00 0.00 0.00 5.10
62 63 4.734398 AAGTGGCAAACATTTGTGAAGA 57.266 36.364 6.24 0.00 40.24 2.87
139 141 3.739519 CGGCTAGAAAAGATGTGGAGAGG 60.740 52.174 0.00 0.00 0.00 3.69
140 142 3.452627 GGCTAGAAAAGATGTGGAGAGGA 59.547 47.826 0.00 0.00 0.00 3.71
265 267 8.805918 ATGCACAACATGATCATCGAGAATGAA 61.806 37.037 4.86 0.00 41.90 2.57
437 439 2.771943 GAGGAGTGGTGGACATGGAATA 59.228 50.000 0.00 0.00 0.00 1.75
450 452 3.055094 ACATGGAATAGCCGACAAAGAGT 60.055 43.478 0.00 0.00 40.66 3.24
676 685 1.292061 TCACGCGCACTAAACTTTGT 58.708 45.000 5.73 0.00 0.00 2.83
744 754 4.815308 ACAACATGCTGCAAATGCTTTTTA 59.185 33.333 6.36 0.00 42.66 1.52
745 755 5.049954 ACAACATGCTGCAAATGCTTTTTAG 60.050 36.000 6.36 0.00 42.66 1.85
753 769 2.254051 TGCTTTTTAGCACGCCGC 59.746 55.556 0.00 0.00 40.23 6.53
779 795 3.624861 CGGCTGTTGAAGATGCTCTAAAT 59.375 43.478 0.00 0.00 0.00 1.40
780 796 4.811024 CGGCTGTTGAAGATGCTCTAAATA 59.189 41.667 0.00 0.00 0.00 1.40
781 797 5.277058 CGGCTGTTGAAGATGCTCTAAATAC 60.277 44.000 0.00 0.00 0.00 1.89
782 798 5.277058 GGCTGTTGAAGATGCTCTAAATACG 60.277 44.000 0.00 0.00 0.00 3.06
783 799 5.292101 GCTGTTGAAGATGCTCTAAATACGT 59.708 40.000 0.00 0.00 0.00 3.57
784 800 6.475727 GCTGTTGAAGATGCTCTAAATACGTA 59.524 38.462 0.00 0.00 0.00 3.57
785 801 7.515371 GCTGTTGAAGATGCTCTAAATACGTAC 60.515 40.741 0.00 0.00 0.00 3.67
786 802 6.755141 TGTTGAAGATGCTCTAAATACGTACC 59.245 38.462 0.00 0.00 0.00 3.34
802 818 9.933723 AAATACGTACCAGTAGTAATTGAAAGT 57.066 29.630 0.00 0.00 31.05 2.66
840 856 0.466189 CCCTCCCAATCCAATCCACG 60.466 60.000 0.00 0.00 0.00 4.94
848 864 3.317993 CCAATCCAATCCACGATAAACCC 59.682 47.826 0.00 0.00 0.00 4.11
1005 1021 4.487412 GCAAGCTCCGCCATGCAC 62.487 66.667 0.95 0.00 40.19 4.57
1006 1022 4.170062 CAAGCTCCGCCATGCACG 62.170 66.667 0.00 0.00 0.00 5.34
1142 1170 1.000646 AGAGAGAGACGGACCCCAC 60.001 63.158 0.00 0.00 0.00 4.61
1143 1171 1.000646 GAGAGAGACGGACCCCACT 60.001 63.158 0.00 0.00 0.00 4.00
1311 1339 0.258194 AGATACGGGGGTTCTCGTCT 59.742 55.000 0.00 0.00 40.31 4.18
1515 1847 7.812191 TGTTTTATGTGGACATTGCAGAAATAC 59.188 33.333 0.00 0.00 37.76 1.89
1516 1848 7.701539 TTTATGTGGACATTGCAGAAATACT 57.298 32.000 0.00 0.00 37.76 2.12
1517 1849 5.824904 ATGTGGACATTGCAGAAATACTC 57.175 39.130 0.00 0.00 31.37 2.59
1518 1850 4.009675 TGTGGACATTGCAGAAATACTCC 58.990 43.478 0.00 0.00 0.00 3.85
1519 1851 3.378427 GTGGACATTGCAGAAATACTCCC 59.622 47.826 0.00 0.00 0.00 4.30
1520 1852 3.266772 TGGACATTGCAGAAATACTCCCT 59.733 43.478 0.00 0.00 0.00 4.20
1522 1854 3.879892 GACATTGCAGAAATACTCCCTCC 59.120 47.826 0.00 0.00 0.00 4.30
1523 1855 2.691409 TTGCAGAAATACTCCCTCCG 57.309 50.000 0.00 0.00 0.00 4.63
1524 1856 1.568504 TGCAGAAATACTCCCTCCGT 58.431 50.000 0.00 0.00 0.00 4.69
1526 1858 2.093658 TGCAGAAATACTCCCTCCGTTC 60.094 50.000 0.00 0.00 0.00 3.95
1527 1859 2.742204 GCAGAAATACTCCCTCCGTTCC 60.742 54.545 0.00 0.00 0.00 3.62
1528 1860 2.500098 CAGAAATACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
1529 1861 3.055385 CAGAAATACTCCCTCCGTTCCAA 60.055 47.826 0.00 0.00 0.00 3.53
1532 1864 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
1533 1865 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
1535 1867 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1536 1868 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1538 1870 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1539 1871 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1540 1872 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1542 1874 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1544 1876 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1546 1878 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1548 1880 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1550 1882 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1551 1883 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1552 1884 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1553 1885 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1556 1888 4.044336 TCGTCGTGGTTTTAGTTCAAGA 57.956 40.909 0.00 0.00 0.00 3.02
1557 1889 4.046462 TCGTCGTGGTTTTAGTTCAAGAG 58.954 43.478 0.00 0.00 0.00 2.85
1558 1890 3.800506 CGTCGTGGTTTTAGTTCAAGAGT 59.199 43.478 0.00 0.00 0.00 3.24
1560 1892 5.459762 CGTCGTGGTTTTAGTTCAAGAGTAA 59.540 40.000 0.00 0.00 0.00 2.24
1561 1893 6.145048 CGTCGTGGTTTTAGTTCAAGAGTAAT 59.855 38.462 0.00 0.00 0.00 1.89
1562 1894 7.306983 CGTCGTGGTTTTAGTTCAAGAGTAATT 60.307 37.037 0.00 0.00 0.00 1.40
1563 1895 8.340443 GTCGTGGTTTTAGTTCAAGAGTAATTT 58.660 33.333 0.00 0.00 0.00 1.82
1565 1897 7.589954 CGTGGTTTTAGTTCAAGAGTAATTTGG 59.410 37.037 0.00 0.00 0.00 3.28
1567 1899 9.191479 TGGTTTTAGTTCAAGAGTAATTTGGAA 57.809 29.630 0.00 0.00 0.00 3.53
1568 1900 9.459640 GGTTTTAGTTCAAGAGTAATTTGGAAC 57.540 33.333 0.00 0.00 0.00 3.62
1569 1901 9.166126 GTTTTAGTTCAAGAGTAATTTGGAACG 57.834 33.333 0.00 0.00 0.00 3.95
1570 1902 5.941948 AGTTCAAGAGTAATTTGGAACGG 57.058 39.130 0.00 0.00 0.00 4.44
1571 1903 5.617252 AGTTCAAGAGTAATTTGGAACGGA 58.383 37.500 0.00 0.00 0.00 4.69
1572 1904 5.701290 AGTTCAAGAGTAATTTGGAACGGAG 59.299 40.000 0.00 0.00 0.00 4.63
1575 1907 3.178865 AGAGTAATTTGGAACGGAGGGA 58.821 45.455 0.00 0.00 0.00 4.20
1576 1908 3.197983 AGAGTAATTTGGAACGGAGGGAG 59.802 47.826 0.00 0.00 0.00 4.30
1577 1909 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1578 1910 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1616 1949 7.495606 AGTTGAAATCATTTCCAGTTGTTTTCC 59.504 33.333 7.68 0.00 38.90 3.13
1716 2049 2.102578 GCCCTTCTTGGTGCAACATAT 58.897 47.619 4.62 0.00 39.98 1.78
1727 2060 5.118286 TGGTGCAACATATGAGTGTAGATG 58.882 41.667 10.38 0.00 39.98 2.90
1869 2202 5.363101 TGTCTGAATCAGTTAGGATGATGC 58.637 41.667 10.36 0.00 37.46 3.91
1900 2233 7.815840 TGAAAATTCAGTGACCACTATTCAA 57.184 32.000 1.95 0.00 40.20 2.69
1928 2262 5.473504 ACTTGGGTATTAAACTTGAGTGCTG 59.526 40.000 0.00 0.00 0.00 4.41
1943 2277 2.633967 AGTGCTGAAATCAAAATGCCCA 59.366 40.909 0.00 0.00 0.00 5.36
1966 2300 0.951558 AGTGGCAACGTCATTGGTTC 59.048 50.000 0.00 0.00 38.88 3.62
2030 2365 3.172339 AGTATGGCTTCATTTTGGGCAA 58.828 40.909 0.00 0.00 38.89 4.52
2167 2502 7.961351 TCAAAAGGAAATTTTCTTGATGGCTA 58.039 30.769 12.58 0.00 39.11 3.93
2173 2508 5.921962 AATTTTCTTGATGGCTAGGGAAC 57.078 39.130 0.00 0.00 0.00 3.62
2174 2509 4.380843 TTTTCTTGATGGCTAGGGAACA 57.619 40.909 0.00 0.00 0.00 3.18
2309 2644 3.245586 TGCACCCTAAAATCCCTGTGAAT 60.246 43.478 0.00 0.00 0.00 2.57
2344 2679 7.921786 TCAACTTCAATAATCTCCGTTTGAT 57.078 32.000 0.00 0.00 0.00 2.57
2417 3002 5.722021 AAAAGTTAGGCCTTGTACAATGG 57.278 39.130 12.58 13.26 0.00 3.16
2418 3003 3.366052 AGTTAGGCCTTGTACAATGGG 57.634 47.619 12.58 14.91 0.00 4.00
2419 3004 2.916934 AGTTAGGCCTTGTACAATGGGA 59.083 45.455 12.58 0.00 0.00 4.37
2420 3005 3.054361 AGTTAGGCCTTGTACAATGGGAG 60.054 47.826 12.58 1.65 0.00 4.30
2421 3006 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
2422 3007 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
2423 3008 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
2424 3009 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
2425 3010 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
2428 3013 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
2429 3014 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
2431 3016 1.561542 ACAATGGGAGGTGCTTAGGAG 59.438 52.381 0.00 0.00 0.00 3.69
2433 3018 1.799933 ATGGGAGGTGCTTAGGAGAG 58.200 55.000 0.00 0.00 0.00 3.20
2436 3021 0.827368 GGAGGTGCTTAGGAGAGGTG 59.173 60.000 0.00 0.00 0.00 4.00
2437 3022 0.176910 GAGGTGCTTAGGAGAGGTGC 59.823 60.000 0.00 0.00 0.00 5.01
2439 3024 0.615850 GGTGCTTAGGAGAGGTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
2440 3025 1.831736 GGTGCTTAGGAGAGGTGCTTA 59.168 52.381 0.00 0.00 0.00 3.09
2441 3026 2.159028 GGTGCTTAGGAGAGGTGCTTAG 60.159 54.545 0.00 0.00 0.00 2.18
2442 3027 2.761208 GTGCTTAGGAGAGGTGCTTAGA 59.239 50.000 0.00 0.00 0.00 2.10
2443 3028 3.027412 TGCTTAGGAGAGGTGCTTAGAG 58.973 50.000 0.00 0.00 0.00 2.43
2444 3029 3.292460 GCTTAGGAGAGGTGCTTAGAGA 58.708 50.000 0.00 0.00 0.00 3.10
2445 3030 3.702045 GCTTAGGAGAGGTGCTTAGAGAA 59.298 47.826 0.00 0.00 0.00 2.87
2446 3031 4.160626 GCTTAGGAGAGGTGCTTAGAGAAA 59.839 45.833 0.00 0.00 0.00 2.52
2447 3032 5.163353 GCTTAGGAGAGGTGCTTAGAGAAAT 60.163 44.000 0.00 0.00 0.00 2.17
2448 3033 6.041069 GCTTAGGAGAGGTGCTTAGAGAAATA 59.959 42.308 0.00 0.00 0.00 1.40
2449 3034 7.418025 GCTTAGGAGAGGTGCTTAGAGAAATAA 60.418 40.741 0.00 0.00 0.00 1.40
2450 3035 6.875972 AGGAGAGGTGCTTAGAGAAATAAA 57.124 37.500 0.00 0.00 0.00 1.40
2451 3036 6.645306 AGGAGAGGTGCTTAGAGAAATAAAC 58.355 40.000 0.00 0.00 0.00 2.01
2452 3037 5.818336 GGAGAGGTGCTTAGAGAAATAAACC 59.182 44.000 0.00 0.00 0.00 3.27
2453 3038 6.374417 AGAGGTGCTTAGAGAAATAAACCA 57.626 37.500 0.00 0.00 0.00 3.67
2462 3047 7.094162 GCTTAGAGAAATAAACCAGGCTTTTCT 60.094 37.037 8.86 8.86 38.86 2.52
2467 3052 7.378966 AGAAATAAACCAGGCTTTTCTTAAGC 58.621 34.615 4.24 0.98 42.30 3.09
2468 3053 6.664428 AATAAACCAGGCTTTTCTTAAGCA 57.336 33.333 11.18 0.00 44.71 3.91
2469 3054 4.322080 AAACCAGGCTTTTCTTAAGCAC 57.678 40.909 11.18 1.86 44.71 4.40
2470 3055 2.239400 ACCAGGCTTTTCTTAAGCACC 58.761 47.619 11.18 0.00 44.71 5.01
2471 3056 1.200020 CCAGGCTTTTCTTAAGCACCG 59.800 52.381 11.18 0.00 44.71 4.94
2472 3057 1.200020 CAGGCTTTTCTTAAGCACCGG 59.800 52.381 0.00 0.00 44.71 5.28
2473 3058 1.202891 AGGCTTTTCTTAAGCACCGGT 60.203 47.619 0.00 0.00 44.71 5.28
2474 3059 1.068541 GGCTTTTCTTAAGCACCGGTG 60.069 52.381 30.66 30.66 44.71 4.94
2489 3074 4.699637 CACCGGTGCTTATTTGTATAGGA 58.300 43.478 24.02 0.00 0.00 2.94
2492 3077 6.590292 CACCGGTGCTTATTTGTATAGGATAG 59.410 42.308 24.02 0.00 0.00 2.08
2493 3078 6.495872 ACCGGTGCTTATTTGTATAGGATAGA 59.504 38.462 6.12 0.00 0.00 1.98
2494 3079 6.812160 CCGGTGCTTATTTGTATAGGATAGAC 59.188 42.308 0.00 0.00 32.35 2.59
2495 3080 6.527023 CGGTGCTTATTTGTATAGGATAGACG 59.473 42.308 0.00 0.00 35.04 4.18
2496 3081 6.310711 GGTGCTTATTTGTATAGGATAGACGC 59.689 42.308 0.00 0.00 35.04 5.19
2498 3083 7.599245 GTGCTTATTTGTATAGGATAGACGCTT 59.401 37.037 0.00 0.00 35.04 4.68
2499 3084 8.799367 TGCTTATTTGTATAGGATAGACGCTTA 58.201 33.333 0.00 0.00 35.04 3.09
2500 3085 9.635520 GCTTATTTGTATAGGATAGACGCTTAA 57.364 33.333 0.00 0.00 35.04 1.85
2518 3103 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
2520 3105 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
2521 3106 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
2522 3107 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
2524 3109 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
2525 3110 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
2526 3111 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
2529 3114 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
2530 3115 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
2531 3116 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
2534 3119 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
2547 3137 2.933769 CACCGGTGCTTCAGAAAAATC 58.066 47.619 24.02 0.00 0.00 2.17
2548 3138 1.886542 ACCGGTGCTTCAGAAAAATCC 59.113 47.619 6.12 0.00 0.00 3.01
2549 3139 1.135689 CCGGTGCTTCAGAAAAATCCG 60.136 52.381 0.00 0.00 37.04 4.18
2554 3144 4.022676 GGTGCTTCAGAAAAATCCGGTTTA 60.023 41.667 0.00 0.00 0.00 2.01
2557 3147 6.645003 GTGCTTCAGAAAAATCCGGTTTATTT 59.355 34.615 0.00 0.00 0.00 1.40
2558 3148 7.170828 GTGCTTCAGAAAAATCCGGTTTATTTT 59.829 33.333 0.00 3.75 37.98 1.82
2559 3149 7.383843 TGCTTCAGAAAAATCCGGTTTATTTTC 59.616 33.333 19.44 19.44 40.40 2.29
2564 3154 8.860128 CAGAAAAATCCGGTTTATTTTCTAAGC 58.140 33.333 24.50 10.71 45.43 3.09
2565 3155 8.581578 AGAAAAATCCGGTTTATTTTCTAAGCA 58.418 29.630 24.11 0.00 45.38 3.91
2567 3157 8.926715 AAAATCCGGTTTATTTTCTAAGCATC 57.073 30.769 0.00 0.00 32.43 3.91
2568 3158 7.881775 AATCCGGTTTATTTTCTAAGCATCT 57.118 32.000 0.00 0.00 0.00 2.90
2569 3159 6.920569 TCCGGTTTATTTTCTAAGCATCTC 57.079 37.500 0.00 0.00 0.00 2.75
2571 3161 6.761714 TCCGGTTTATTTTCTAAGCATCTCTC 59.238 38.462 0.00 0.00 0.00 3.20
2572 3162 6.763610 CCGGTTTATTTTCTAAGCATCTCTCT 59.236 38.462 0.00 0.00 0.00 3.10
2573 3163 7.926555 CCGGTTTATTTTCTAAGCATCTCTCTA 59.073 37.037 0.00 0.00 0.00 2.43
2574 3164 9.314321 CGGTTTATTTTCTAAGCATCTCTCTAA 57.686 33.333 0.00 0.00 0.00 2.10
2577 3167 9.890629 TTTATTTTCTAAGCATCTCTCTAAGCA 57.109 29.630 0.00 0.00 0.00 3.91
2579 3169 4.927978 TCTAAGCATCTCTCTAAGCACC 57.072 45.455 0.00 0.00 0.00 5.01
2580 3170 4.541705 TCTAAGCATCTCTCTAAGCACCT 58.458 43.478 0.00 0.00 0.00 4.00
2581 3171 3.817709 AAGCATCTCTCTAAGCACCTC 57.182 47.619 0.00 0.00 0.00 3.85
2583 3173 1.069978 GCATCTCTCTAAGCACCTCCC 59.930 57.143 0.00 0.00 0.00 4.30
2584 3174 2.392662 CATCTCTCTAAGCACCTCCCA 58.607 52.381 0.00 0.00 0.00 4.37
2585 3175 2.856760 TCTCTCTAAGCACCTCCCAT 57.143 50.000 0.00 0.00 0.00 4.00
2587 3177 2.768527 TCTCTCTAAGCACCTCCCATTG 59.231 50.000 0.00 0.00 0.00 2.82
2588 3178 2.503356 CTCTCTAAGCACCTCCCATTGT 59.497 50.000 0.00 0.00 0.00 2.71
2714 3304 5.367937 AGTCTACCATCATTTCCATACTGCT 59.632 40.000 0.00 0.00 0.00 4.24
3079 3669 2.700371 TCGTGGTGAGGCTGATATCATT 59.300 45.455 5.72 0.00 0.00 2.57
3321 4300 5.124457 TCATTTTAGCTGTCTGCATTCCTTC 59.876 40.000 0.00 0.00 45.94 3.46
3329 4309 3.243501 TGTCTGCATTCCTTCTTTTGTGC 60.244 43.478 0.00 0.00 0.00 4.57
3647 4627 7.016072 CCAGAGGAGGTATATCTTGAATCAACT 59.984 40.741 0.00 0.00 0.00 3.16
3735 4715 8.565896 AGTCAAAATATTGCTGTGACAGATAA 57.434 30.769 18.18 10.79 40.83 1.75
3736 4716 9.013229 AGTCAAAATATTGCTGTGACAGATAAA 57.987 29.630 18.18 7.49 40.83 1.40
3761 4741 3.509575 CGTTGAAATTTTCATCTGGGGGA 59.490 43.478 12.39 0.00 39.84 4.81
3782 4764 5.012046 GGGACCCATCAACAAGATTCTTTTT 59.988 40.000 5.33 0.00 33.72 1.94
3881 5139 7.553334 ACACCGTACTGTCACATTAGAATATT 58.447 34.615 0.00 0.00 0.00 1.28
3915 5173 2.304761 TGTAAGCTTAGTGTTCCCCTGG 59.695 50.000 6.38 0.00 0.00 4.45
3925 5183 0.251165 GTTCCCCTGGTTAGCTGCAA 60.251 55.000 1.02 0.00 0.00 4.08
3931 5189 3.513515 CCCCTGGTTAGCTGCAATTTTAA 59.486 43.478 1.02 0.00 0.00 1.52
3933 5191 4.176271 CCTGGTTAGCTGCAATTTTAAGC 58.824 43.478 1.02 1.71 37.20 3.09
3934 5192 4.321899 CCTGGTTAGCTGCAATTTTAAGCA 60.322 41.667 1.02 6.38 39.47 3.91
3935 5193 5.207110 TGGTTAGCTGCAATTTTAAGCAA 57.793 34.783 1.02 0.00 40.73 3.91
3936 5194 5.229423 TGGTTAGCTGCAATTTTAAGCAAG 58.771 37.500 1.02 0.00 40.73 4.01
3963 5243 6.309737 GTCAGCAGATTTTGATTCCATTTGAC 59.690 38.462 0.00 0.00 0.00 3.18
3969 5249 9.013490 CAGATTTTGATTCCATTTGACGTATTC 57.987 33.333 0.00 0.00 0.00 1.75
3979 5259 7.335627 TCCATTTGACGTATTCTTAGGTGAAT 58.664 34.615 0.00 0.00 39.63 2.57
4069 5349 7.197901 AGTCTTCAAGAATCCATCTGAGATT 57.802 36.000 0.00 0.00 38.79 2.40
4094 5374 4.636206 AGATCAATTCTACAAAGGTTCGCC 59.364 41.667 0.00 0.00 30.96 5.54
4116 5396 1.739466 GCTCGCTTCCATGTCATTTCA 59.261 47.619 0.00 0.00 0.00 2.69
4119 5399 4.319333 GCTCGCTTCCATGTCATTTCATAG 60.319 45.833 0.00 0.00 0.00 2.23
4301 5581 3.523157 TCCAAATCTCCTGCTGGTTCATA 59.477 43.478 9.73 0.00 34.23 2.15
4343 5631 6.020041 CGAGCGTTTAACCTTCTATTTACCTC 60.020 42.308 0.00 0.00 0.00 3.85
4379 5667 3.608474 CGTAAAGGCTGGCTTGTTGTAAC 60.608 47.826 17.73 8.12 0.00 2.50
4380 5668 2.364972 AAGGCTGGCTTGTTGTAACT 57.635 45.000 16.28 0.00 0.00 2.24
4433 5747 2.380084 TCAGAGTAACATTCCGTGCC 57.620 50.000 0.00 0.00 0.00 5.01
4437 5751 2.038557 AGAGTAACATTCCGTGCCAAGT 59.961 45.455 0.00 0.00 0.00 3.16
4442 5756 1.877443 ACATTCCGTGCCAAGTGTAAC 59.123 47.619 0.00 0.00 0.00 2.50
4505 5820 0.108756 TCGTTGTCACACACCGTCAA 60.109 50.000 0.00 0.00 35.45 3.18
4545 5860 2.602217 CGTTTCTCTTTTGCAGAACCCG 60.602 50.000 0.00 0.00 29.30 5.28
4644 5959 0.842635 CCCATCCCCCTTCTCTTGAG 59.157 60.000 0.00 0.00 0.00 3.02
4814 6129 1.337118 TTGGATTTGGAGGGCACAAC 58.663 50.000 0.00 0.00 0.00 3.32
4904 6219 6.229733 GCATCCTCTTGATTAGATGTTAGCT 58.770 40.000 0.00 0.00 38.67 3.32
4918 6233 6.546395 AGATGTTAGCTTGCTTGAATTTACG 58.454 36.000 0.00 0.00 0.00 3.18
4970 6285 4.641645 TGGTGCTGCCTTGACCCG 62.642 66.667 4.64 0.00 38.35 5.28
5061 6376 7.657354 TGGAATAGTGTAAAGGATCATTCATCG 59.343 37.037 0.00 0.00 31.26 3.84
5067 6382 7.442364 AGTGTAAAGGATCATTCATCGGTATTG 59.558 37.037 0.00 0.00 31.26 1.90
5075 6390 8.023128 GGATCATTCATCGGTATTGTAATTTGG 58.977 37.037 0.00 0.00 31.26 3.28
5079 6394 8.616942 CATTCATCGGTATTGTAATTTGGTACA 58.383 33.333 0.00 0.00 32.11 2.90
5083 6398 9.268268 CATCGGTATTGTAATTTGGTACATAGT 57.732 33.333 0.00 0.00 39.30 2.12
5098 6413 6.601613 TGGTACATAGTTCATTTGGATGTTCC 59.398 38.462 0.00 0.00 38.04 3.62
5102 6417 3.701664 AGTTCATTTGGATGTTCCTCCC 58.298 45.455 0.00 0.00 37.46 4.30
5125 6440 1.073284 TCCCTTTCCTGTACAAGTGCC 59.927 52.381 0.00 0.00 0.00 5.01
5160 6475 9.367444 CAGTTTTTCGATTAATGGTCTACTAGT 57.633 33.333 0.00 0.00 0.00 2.57
5165 6480 7.976135 TCGATTAATGGTCTACTAGTAGTCC 57.024 40.000 28.99 28.99 40.33 3.85
5168 6483 3.860968 ATGGTCTACTAGTAGTCCGCT 57.139 47.619 29.30 20.90 41.99 5.52
5226 6541 2.896854 GGATTGGCGCATCGAGCA 60.897 61.111 10.83 0.00 46.13 4.26
5250 6565 1.968493 GAGCGGTACCCTCCATCATTA 59.032 52.381 15.79 0.00 0.00 1.90
5267 6582 6.429692 CCATCATTACAACACAGGTCTTGTTA 59.570 38.462 0.00 0.00 38.16 2.41
5300 6619 7.499321 TTTTTGCAATTAAGGTCTCTTCGTA 57.501 32.000 0.00 0.00 34.59 3.43
5301 6620 6.476243 TTTGCAATTAAGGTCTCTTCGTAC 57.524 37.500 0.00 0.00 34.59 3.67
5304 6623 6.170506 TGCAATTAAGGTCTCTTCGTACAAT 58.829 36.000 0.00 0.00 34.59 2.71
5305 6624 6.653320 TGCAATTAAGGTCTCTTCGTACAATT 59.347 34.615 0.00 0.00 34.59 2.32
5333 6652 8.818141 TTTTCACAACAGATGTTTGTTACAAA 57.182 26.923 6.41 6.41 41.46 2.83
5335 6654 8.994429 TTCACAACAGATGTTTGTTACAAATT 57.006 26.923 13.84 5.00 41.46 1.82
5338 6657 9.475505 CACAACAGATGTTTGTTACAAATTTTG 57.524 29.630 13.84 11.74 41.46 2.44
5365 6684 7.048629 TGTCTTCCATCTTTTTGCAACATAA 57.951 32.000 0.00 0.00 0.00 1.90
5366 6685 6.922957 TGTCTTCCATCTTTTTGCAACATAAC 59.077 34.615 0.00 0.00 0.00 1.89
5394 6713 8.307582 TGTTGTAGAAAAATTTAAGGGGAACA 57.692 30.769 0.00 0.00 0.00 3.18
5400 6719 8.190326 AGAAAAATTTAAGGGGAACAGTAAGG 57.810 34.615 0.00 0.00 0.00 2.69
5406 6726 0.400594 GGGGAACAGTAAGGTGCAGT 59.599 55.000 0.00 0.00 0.00 4.40
5411 6731 1.037493 ACAGTAAGGTGCAGTGACGA 58.963 50.000 0.00 0.00 0.00 4.20
5414 6734 1.411246 AGTAAGGTGCAGTGACGAACA 59.589 47.619 0.00 0.00 0.00 3.18
5437 6757 3.376859 ACACACGAAACACACATCACATT 59.623 39.130 0.00 0.00 0.00 2.71
5438 6758 3.968096 CACACGAAACACACATCACATTC 59.032 43.478 0.00 0.00 0.00 2.67
5439 6759 3.625313 ACACGAAACACACATCACATTCA 59.375 39.130 0.00 0.00 0.00 2.57
5440 6760 3.968096 CACGAAACACACATCACATTCAC 59.032 43.478 0.00 0.00 0.00 3.18
5441 6761 3.625313 ACGAAACACACATCACATTCACA 59.375 39.130 0.00 0.00 0.00 3.58
5442 6762 4.275689 ACGAAACACACATCACATTCACAT 59.724 37.500 0.00 0.00 0.00 3.21
5443 6763 4.613866 CGAAACACACATCACATTCACATG 59.386 41.667 0.00 0.00 36.34 3.21
5444 6764 4.508461 AACACACATCACATTCACATGG 57.492 40.909 0.00 0.00 34.27 3.66
5451 6771 3.515717 ATCACATTCACATGGGACACGC 61.516 50.000 0.00 0.00 46.04 5.34
5459 6779 2.179767 TGGGACACGCGTCATACG 59.820 61.111 9.86 0.00 44.54 3.06
5460 6780 2.334181 TGGGACACGCGTCATACGA 61.334 57.895 9.86 0.00 46.05 3.43
5462 6782 2.222217 GGACACGCGTCATACGAGC 61.222 63.158 9.86 0.00 45.19 5.03
5508 6828 1.141881 CAGTCGGTCGAGGGGAATG 59.858 63.158 0.00 0.00 0.00 2.67
5539 6859 4.607293 ACTAGAACATGTCACTGAAGCA 57.393 40.909 0.00 0.00 0.00 3.91
5577 6897 2.602217 CGTTGCCAGTCACTAAAACAGC 60.602 50.000 0.00 0.00 0.00 4.40
5583 6903 4.789802 GCCAGTCACTAAAACAGCTTTGTC 60.790 45.833 0.00 0.00 0.00 3.18
5643 6963 1.136305 CCCTTGATGAGCTTGCCATTG 59.864 52.381 0.00 0.00 0.00 2.82
5669 6989 4.039357 CCTCGACCACAGCGACGT 62.039 66.667 0.00 0.00 33.71 4.34
5674 6994 1.080705 GACCACAGCGACGTAGCTT 60.081 57.895 21.16 6.34 46.80 3.74
5675 6995 0.169672 GACCACAGCGACGTAGCTTA 59.830 55.000 21.16 0.00 46.80 3.09
5676 6996 0.109412 ACCACAGCGACGTAGCTTAC 60.109 55.000 21.16 0.00 46.80 2.34
5679 6999 1.399440 CACAGCGACGTAGCTTACCTA 59.601 52.381 21.16 0.00 46.80 3.08
5680 7000 1.669779 ACAGCGACGTAGCTTACCTAG 59.330 52.381 21.16 10.87 46.80 3.02
5681 7001 0.662085 AGCGACGTAGCTTACCTAGC 59.338 55.000 18.03 0.00 46.80 3.42
5690 7010 2.598686 GCTTACCTAGCTACCACCAC 57.401 55.000 0.00 0.00 46.77 4.16
5691 7011 1.138464 GCTTACCTAGCTACCACCACC 59.862 57.143 0.00 0.00 46.77 4.61
5692 7012 2.463752 CTTACCTAGCTACCACCACCA 58.536 52.381 0.00 0.00 0.00 4.17
5703 7023 2.910544 ACCACCACCACTCAATACCTA 58.089 47.619 0.00 0.00 0.00 3.08
5736 7060 7.636150 AGTCAAGGATGAATGAATAAACCAG 57.364 36.000 0.00 0.00 37.30 4.00
5772 7096 1.949257 CGGAGCAAACAAGGTCACC 59.051 57.895 0.00 0.00 37.74 4.02
5780 7104 1.523758 AACAAGGTCACCGCAATCTC 58.476 50.000 0.00 0.00 0.00 2.75
5813 7137 2.416431 GGCACATGAAACAGATCAAGGC 60.416 50.000 0.00 0.00 32.06 4.35
5837 7161 5.021033 ACCTTTTGTGATGTGATTTGCAA 57.979 34.783 0.00 0.00 0.00 4.08
5839 7163 5.879223 ACCTTTTGTGATGTGATTTGCAAAA 59.121 32.000 17.19 0.00 35.45 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.471456 GCAAGATAGTAGCCATAGTTGCATT 59.529 40.000 4.89 0.00 39.07 3.56
26 27 3.245229 TGCCACTTTGGGTAGATGTCATT 60.245 43.478 0.00 0.00 38.19 2.57
115 116 3.260884 TCTCCACATCTTTTCTAGCCGTT 59.739 43.478 0.00 0.00 0.00 4.44
139 141 2.807967 GGCTTGCAAAATCCCAAAAGTC 59.192 45.455 0.00 0.00 0.00 3.01
140 142 2.487086 GGGCTTGCAAAATCCCAAAAGT 60.487 45.455 20.29 0.00 38.26 2.66
265 267 3.514309 AGTAGTCTAAATCTTGGCCACGT 59.486 43.478 3.88 0.00 0.00 4.49
437 439 4.679373 ATCATGATACTCTTTGTCGGCT 57.321 40.909 6.36 0.00 0.00 5.52
450 452 6.193514 ACATCAAACGCACAAATCATGATA 57.806 33.333 9.04 0.00 0.00 2.15
574 577 6.039616 GCACTCCAAACACAACAAAAAGATA 58.960 36.000 0.00 0.00 0.00 1.98
644 651 2.664851 CGTGAACCGCTCCAGCAA 60.665 61.111 0.00 0.00 42.21 3.91
665 674 3.562557 CCAACGGTGCTACAAAGTTTAGT 59.437 43.478 0.00 0.00 0.00 2.24
676 685 1.671054 GCTTGCTCCAACGGTGCTA 60.671 57.895 0.00 0.51 42.02 3.49
700 710 0.661187 CATGAGTTTTTGCGCTGCGT 60.661 50.000 24.04 0.62 0.00 5.24
753 769 2.436646 ATCTTCAACAGCCGCCCG 60.437 61.111 0.00 0.00 0.00 6.13
779 795 8.023128 GTCACTTTCAATTACTACTGGTACGTA 58.977 37.037 0.00 0.00 0.00 3.57
780 796 6.865205 GTCACTTTCAATTACTACTGGTACGT 59.135 38.462 0.00 0.00 0.00 3.57
781 797 6.864685 TGTCACTTTCAATTACTACTGGTACG 59.135 38.462 0.00 0.00 0.00 3.67
782 798 7.871463 ACTGTCACTTTCAATTACTACTGGTAC 59.129 37.037 0.00 0.00 0.00 3.34
783 799 7.959175 ACTGTCACTTTCAATTACTACTGGTA 58.041 34.615 0.00 0.00 0.00 3.25
784 800 6.827727 ACTGTCACTTTCAATTACTACTGGT 58.172 36.000 0.00 0.00 0.00 4.00
785 801 7.657761 AGAACTGTCACTTTCAATTACTACTGG 59.342 37.037 0.00 0.00 0.00 4.00
786 802 8.491152 CAGAACTGTCACTTTCAATTACTACTG 58.509 37.037 0.00 0.00 0.00 2.74
802 818 2.289444 GGGTCGGAAATCAGAACTGTCA 60.289 50.000 1.73 0.00 0.00 3.58
840 856 3.750501 TTTTGGAGGGAGGGGTTTATC 57.249 47.619 0.00 0.00 0.00 1.75
848 864 2.024080 TGGATGGATTTTTGGAGGGAGG 60.024 50.000 0.00 0.00 0.00 4.30
917 933 3.541713 GAGGAAGCCGCGGGAGAT 61.542 66.667 29.38 0.00 0.00 2.75
926 942 4.475135 GCGGTGGAGGAGGAAGCC 62.475 72.222 0.00 0.00 0.00 4.35
1142 1170 0.806102 CGTGATCACCACCCGCTTAG 60.806 60.000 20.03 0.00 42.76 2.18
1143 1171 1.216977 CGTGATCACCACCCGCTTA 59.783 57.895 20.03 0.00 42.76 3.09
1311 1339 2.420568 GCCGTCGATGTACCCCTCA 61.421 63.158 3.52 0.00 0.00 3.86
1474 1806 5.698545 ACATAAAACAGAGAGCTCAGTTCAC 59.301 40.000 17.77 0.00 38.17 3.18
1515 1847 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1516 1848 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1517 1849 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1518 1850 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1519 1851 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1520 1852 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1522 1854 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
1523 1855 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1524 1856 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1526 1858 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1527 1859 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1528 1860 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1529 1861 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1532 1864 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1533 1865 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1535 1867 4.044336 TCTTGAACTAAAACCACGACGA 57.956 40.909 0.00 0.00 0.00 4.20
1536 1868 3.800506 ACTCTTGAACTAAAACCACGACG 59.199 43.478 0.00 0.00 0.00 5.12
1538 1870 8.339714 CAAATTACTCTTGAACTAAAACCACGA 58.660 33.333 0.00 0.00 0.00 4.35
1539 1871 7.589954 CCAAATTACTCTTGAACTAAAACCACG 59.410 37.037 0.00 0.00 0.00 4.94
1540 1872 8.626526 TCCAAATTACTCTTGAACTAAAACCAC 58.373 33.333 0.00 0.00 0.00 4.16
1542 1874 9.459640 GTTCCAAATTACTCTTGAACTAAAACC 57.540 33.333 0.00 0.00 0.00 3.27
1544 1876 8.347035 CCGTTCCAAATTACTCTTGAACTAAAA 58.653 33.333 0.00 0.00 0.00 1.52
1546 1878 7.218614 TCCGTTCCAAATTACTCTTGAACTAA 58.781 34.615 0.00 0.00 0.00 2.24
1548 1880 5.617252 TCCGTTCCAAATTACTCTTGAACT 58.383 37.500 0.00 0.00 0.00 3.01
1550 1882 5.001232 CCTCCGTTCCAAATTACTCTTGAA 58.999 41.667 0.00 0.00 0.00 2.69
1551 1883 4.564821 CCCTCCGTTCCAAATTACTCTTGA 60.565 45.833 0.00 0.00 0.00 3.02
1552 1884 3.689649 CCCTCCGTTCCAAATTACTCTTG 59.310 47.826 0.00 0.00 0.00 3.02
1553 1885 3.585732 TCCCTCCGTTCCAAATTACTCTT 59.414 43.478 0.00 0.00 0.00 2.85
1556 1888 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1557 1889 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1558 1890 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1560 1892 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1561 1893 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1562 1894 2.309755 TCTACTACTCCCTCCGTTCCAA 59.690 50.000 0.00 0.00 0.00 3.53
1563 1895 1.918262 TCTACTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
1565 1897 3.280197 AGTCTACTACTCCCTCCGTTC 57.720 52.381 0.00 0.00 30.33 3.95
1575 1907 8.410673 TGATTTCAACTCAAGAGTCTACTACT 57.589 34.615 2.78 0.00 41.58 2.57
1576 1908 9.646427 AATGATTTCAACTCAAGAGTCTACTAC 57.354 33.333 2.78 0.00 41.58 2.73
1578 1910 9.213799 GAAATGATTTCAACTCAAGAGTCTACT 57.786 33.333 12.73 0.00 41.58 2.57
1616 1949 8.141268 TCTACAAAAATTTCCACTAAGCCAAAG 58.859 33.333 0.00 0.00 0.00 2.77
1716 2049 5.301805 TGTCTTGAAGTGACATCTACACTCA 59.698 40.000 0.00 0.00 46.01 3.41
1727 2060 5.757850 ATCAAAGGTTGTCTTGAAGTGAC 57.242 39.130 0.00 0.00 35.55 3.67
1742 2075 6.400568 ACCTGCATTGTTCATAAATCAAAGG 58.599 36.000 0.00 0.00 0.00 3.11
1847 2180 5.363101 TGCATCATCCTAACTGATTCAGAC 58.637 41.667 20.33 0.00 35.18 3.51
1900 2233 8.520351 GCACTCAAGTTTAATACCCAAGTATTT 58.480 33.333 3.97 0.00 45.03 1.40
1928 2262 4.213906 CCACTGTTTGGGCATTTTGATTTC 59.786 41.667 0.00 0.00 42.54 2.17
1943 2277 1.066908 CCAATGACGTTGCCACTGTTT 59.933 47.619 1.56 0.00 36.46 2.83
2020 2355 4.991789 AGGGTGTAAAATTGCCCAAAAT 57.008 36.364 0.00 0.00 43.42 1.82
2071 2406 9.897744 TTTTCTTCAACAAATATCAAGCTACAG 57.102 29.630 0.00 0.00 0.00 2.74
2102 2437 5.342806 TCTCACAAGCAACAAGATAAACG 57.657 39.130 0.00 0.00 0.00 3.60
2167 2502 3.630769 GTCTCGGTTTTCTTTTGTTCCCT 59.369 43.478 0.00 0.00 0.00 4.20
2173 2508 9.463443 AAATTTATCTGTCTCGGTTTTCTTTTG 57.537 29.630 0.00 0.00 0.00 2.44
2174 2509 9.463443 CAAATTTATCTGTCTCGGTTTTCTTTT 57.537 29.630 0.00 0.00 0.00 2.27
2309 2644 8.902806 AGATTATTGAAGTTGAACTCACACAAA 58.097 29.630 0.00 0.79 0.00 2.83
2344 2679 5.237127 GTGCTATGCTATCTACAAACATGCA 59.763 40.000 0.00 0.00 0.00 3.96
2400 2985 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
2401 2986 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
2402 2987 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
2403 2988 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
2404 2989 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
2405 2990 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
2406 2991 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
2408 2993 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
2409 2994 2.504175 TCCTAAGCACCTCCCATTGTAC 59.496 50.000 0.00 0.00 0.00 2.90
2410 2995 2.771943 CTCCTAAGCACCTCCCATTGTA 59.228 50.000 0.00 0.00 0.00 2.41
2411 2996 1.561542 CTCCTAAGCACCTCCCATTGT 59.438 52.381 0.00 0.00 0.00 2.71
2412 2997 1.839994 TCTCCTAAGCACCTCCCATTG 59.160 52.381 0.00 0.00 0.00 2.82
2413 2998 2.122768 CTCTCCTAAGCACCTCCCATT 58.877 52.381 0.00 0.00 0.00 3.16
2415 3000 0.325671 CCTCTCCTAAGCACCTCCCA 60.326 60.000 0.00 0.00 0.00 4.37
2416 3001 0.325765 ACCTCTCCTAAGCACCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
2417 3002 0.827368 CACCTCTCCTAAGCACCTCC 59.173 60.000 0.00 0.00 0.00 4.30
2418 3003 0.176910 GCACCTCTCCTAAGCACCTC 59.823 60.000 0.00 0.00 0.00 3.85
2419 3004 0.252467 AGCACCTCTCCTAAGCACCT 60.252 55.000 0.00 0.00 0.00 4.00
2420 3005 0.615850 AAGCACCTCTCCTAAGCACC 59.384 55.000 0.00 0.00 0.00 5.01
2421 3006 2.761208 TCTAAGCACCTCTCCTAAGCAC 59.239 50.000 0.00 0.00 0.00 4.40
2422 3007 3.027412 CTCTAAGCACCTCTCCTAAGCA 58.973 50.000 0.00 0.00 0.00 3.91
2423 3008 3.292460 TCTCTAAGCACCTCTCCTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
2424 3009 5.923733 TTTCTCTAAGCACCTCTCCTAAG 57.076 43.478 0.00 0.00 0.00 2.18
2425 3010 7.973048 TTATTTCTCTAAGCACCTCTCCTAA 57.027 36.000 0.00 0.00 0.00 2.69
2428 3013 5.818336 GGTTTATTTCTCTAAGCACCTCTCC 59.182 44.000 0.00 0.00 0.00 3.71
2429 3014 6.407202 TGGTTTATTTCTCTAAGCACCTCTC 58.593 40.000 0.00 0.00 0.00 3.20
2431 3016 5.586643 CCTGGTTTATTTCTCTAAGCACCTC 59.413 44.000 0.00 0.00 0.00 3.85
2433 3018 4.096532 GCCTGGTTTATTTCTCTAAGCACC 59.903 45.833 0.00 0.00 0.00 5.01
2436 3021 6.516739 AAAGCCTGGTTTATTTCTCTAAGC 57.483 37.500 0.00 0.00 0.00 3.09
2437 3022 8.341892 AGAAAAGCCTGGTTTATTTCTCTAAG 57.658 34.615 4.86 0.00 35.96 2.18
2439 3024 9.802039 TTAAGAAAAGCCTGGTTTATTTCTCTA 57.198 29.630 9.69 4.33 38.89 2.43
2440 3025 8.706322 TTAAGAAAAGCCTGGTTTATTTCTCT 57.294 30.769 9.69 5.01 38.89 3.10
2441 3026 7.542477 GCTTAAGAAAAGCCTGGTTTATTTCTC 59.458 37.037 6.67 0.00 38.89 2.87
2442 3027 7.015195 TGCTTAAGAAAAGCCTGGTTTATTTCT 59.985 33.333 6.67 4.86 42.36 2.52
2443 3028 7.116376 GTGCTTAAGAAAAGCCTGGTTTATTTC 59.884 37.037 6.67 0.00 42.36 2.17
2444 3029 6.929049 GTGCTTAAGAAAAGCCTGGTTTATTT 59.071 34.615 6.67 0.00 42.36 1.40
2445 3030 6.455647 GTGCTTAAGAAAAGCCTGGTTTATT 58.544 36.000 6.67 0.00 42.36 1.40
2446 3031 5.047306 GGTGCTTAAGAAAAGCCTGGTTTAT 60.047 40.000 6.67 0.00 42.36 1.40
2447 3032 4.279922 GGTGCTTAAGAAAAGCCTGGTTTA 59.720 41.667 6.67 0.00 42.36 2.01
2448 3033 3.069586 GGTGCTTAAGAAAAGCCTGGTTT 59.930 43.478 6.67 0.00 42.36 3.27
2449 3034 2.628178 GGTGCTTAAGAAAAGCCTGGTT 59.372 45.455 6.67 0.00 42.36 3.67
2450 3035 2.239400 GGTGCTTAAGAAAAGCCTGGT 58.761 47.619 6.67 0.00 42.36 4.00
2451 3036 1.200020 CGGTGCTTAAGAAAAGCCTGG 59.800 52.381 6.67 0.00 42.36 4.45
2452 3037 1.200020 CCGGTGCTTAAGAAAAGCCTG 59.800 52.381 6.67 4.28 42.36 4.85
2453 3038 1.202891 ACCGGTGCTTAAGAAAAGCCT 60.203 47.619 6.12 0.00 42.36 4.58
2467 3052 4.699637 TCCTATACAAATAAGCACCGGTG 58.300 43.478 30.66 30.66 0.00 4.94
2468 3053 5.562298 ATCCTATACAAATAAGCACCGGT 57.438 39.130 0.00 0.00 0.00 5.28
2469 3054 6.812160 GTCTATCCTATACAAATAAGCACCGG 59.188 42.308 0.00 0.00 0.00 5.28
2470 3055 6.527023 CGTCTATCCTATACAAATAAGCACCG 59.473 42.308 0.00 0.00 0.00 4.94
2471 3056 6.310711 GCGTCTATCCTATACAAATAAGCACC 59.689 42.308 0.00 0.00 0.00 5.01
2472 3057 7.091443 AGCGTCTATCCTATACAAATAAGCAC 58.909 38.462 0.00 0.00 0.00 4.40
2473 3058 7.228314 AGCGTCTATCCTATACAAATAAGCA 57.772 36.000 0.00 0.00 0.00 3.91
2474 3059 9.635520 TTAAGCGTCTATCCTATACAAATAAGC 57.364 33.333 0.00 0.00 0.00 3.09
2495 3080 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
2496 3081 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
2498 3083 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
2499 3084 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
2500 3085 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
2501 3086 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
2502 3087 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
2503 3088 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
2504 3089 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
2505 3090 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
2508 3093 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
2509 3094 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
2510 3095 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
2513 3098 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
2515 3100 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
2529 3114 1.135689 CGGATTTTTCTGAAGCACCGG 60.136 52.381 0.00 0.00 36.27 5.28
2530 3115 1.135689 CCGGATTTTTCTGAAGCACCG 60.136 52.381 0.00 15.12 39.02 4.94
2531 3116 1.886542 ACCGGATTTTTCTGAAGCACC 59.113 47.619 9.46 0.00 0.00 5.01
2534 3119 7.598869 AGAAAATAAACCGGATTTTTCTGAAGC 59.401 33.333 23.95 9.35 43.26 3.86
2538 3128 8.860128 GCTTAGAAAATAAACCGGATTTTTCTG 58.140 33.333 28.10 20.48 44.11 3.02
2547 3137 6.763610 AGAGAGATGCTTAGAAAATAAACCGG 59.236 38.462 0.00 0.00 0.00 5.28
2548 3138 7.778470 AGAGAGATGCTTAGAAAATAAACCG 57.222 36.000 0.00 0.00 0.00 4.44
2554 3144 6.765512 GGTGCTTAGAGAGATGCTTAGAAAAT 59.234 38.462 0.00 0.00 0.00 1.82
2557 3147 4.959210 AGGTGCTTAGAGAGATGCTTAGAA 59.041 41.667 0.00 0.00 0.00 2.10
2558 3148 4.541705 AGGTGCTTAGAGAGATGCTTAGA 58.458 43.478 0.00 0.00 0.00 2.10
2559 3149 4.261994 GGAGGTGCTTAGAGAGATGCTTAG 60.262 50.000 0.00 0.00 0.00 2.18
2560 3150 3.639094 GGAGGTGCTTAGAGAGATGCTTA 59.361 47.826 0.00 0.00 0.00 3.09
2562 3152 2.038659 GGAGGTGCTTAGAGAGATGCT 58.961 52.381 0.00 0.00 0.00 3.79
2563 3153 1.069978 GGGAGGTGCTTAGAGAGATGC 59.930 57.143 0.00 0.00 0.00 3.91
2564 3154 2.392662 TGGGAGGTGCTTAGAGAGATG 58.607 52.381 0.00 0.00 0.00 2.90
2565 3155 2.856760 TGGGAGGTGCTTAGAGAGAT 57.143 50.000 0.00 0.00 0.00 2.75
2567 3157 2.503356 ACAATGGGAGGTGCTTAGAGAG 59.497 50.000 0.00 0.00 0.00 3.20
2568 3158 2.551270 ACAATGGGAGGTGCTTAGAGA 58.449 47.619 0.00 0.00 0.00 3.10
2569 3159 3.197766 TGTACAATGGGAGGTGCTTAGAG 59.802 47.826 0.00 0.00 0.00 2.43
2571 3161 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
2572 3162 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
2573 3163 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
2574 3164 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
2575 3165 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
2577 3167 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
2579 3169 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
2580 3170 3.186283 TCTAAGGCCTTGTACAATGGGA 58.814 45.455 28.77 2.40 0.00 4.37
2581 3171 3.545703 CTCTAAGGCCTTGTACAATGGG 58.454 50.000 28.77 14.91 0.00 4.00
2583 3173 3.941483 CACCTCTAAGGCCTTGTACAATG 59.059 47.826 28.77 14.55 39.63 2.82
2584 3174 3.844211 TCACCTCTAAGGCCTTGTACAAT 59.156 43.478 28.77 6.21 39.63 2.71
2585 3175 3.244582 TCACCTCTAAGGCCTTGTACAA 58.755 45.455 28.77 8.28 39.63 2.41
2587 3177 3.975168 TTCACCTCTAAGGCCTTGTAC 57.025 47.619 28.77 0.00 39.63 2.90
2588 3178 3.454812 GGATTCACCTCTAAGGCCTTGTA 59.545 47.826 28.77 14.41 39.63 2.41
3079 3669 0.249868 CTTCAGTTCCACCAGCGACA 60.250 55.000 0.00 0.00 0.00 4.35
3321 4300 4.152045 TGAAGCAAACAACAAGCACAAAAG 59.848 37.500 0.00 0.00 0.00 2.27
3329 4309 3.848726 ACAACCTGAAGCAAACAACAAG 58.151 40.909 0.00 0.00 0.00 3.16
3723 4703 9.825972 AAATTTCAACGTATTTATCTGTCACAG 57.174 29.630 0.00 0.00 0.00 3.66
3735 4715 6.350949 CCCCCAGATGAAAATTTCAACGTATT 60.351 38.462 12.75 0.00 43.95 1.89
3736 4716 5.127031 CCCCCAGATGAAAATTTCAACGTAT 59.873 40.000 12.75 0.00 43.95 3.06
3895 5153 2.305052 ACCAGGGGAACACTAAGCTTAC 59.695 50.000 0.86 0.00 0.00 2.34
3915 5173 5.691754 ACACTTGCTTAAAATTGCAGCTAAC 59.308 36.000 0.00 0.00 40.46 2.34
3925 5183 5.972107 ATCTGCTGACACTTGCTTAAAAT 57.028 34.783 0.00 0.00 0.00 1.82
3931 5189 3.216800 TCAAAATCTGCTGACACTTGCT 58.783 40.909 0.00 0.00 0.00 3.91
3933 5191 5.159209 GGAATCAAAATCTGCTGACACTTG 58.841 41.667 0.00 0.57 0.00 3.16
3934 5192 4.828939 TGGAATCAAAATCTGCTGACACTT 59.171 37.500 0.00 0.00 0.00 3.16
3935 5193 4.401022 TGGAATCAAAATCTGCTGACACT 58.599 39.130 0.00 0.00 0.00 3.55
3936 5194 4.771590 TGGAATCAAAATCTGCTGACAC 57.228 40.909 0.00 0.00 0.00 3.67
3969 5249 6.968904 GTGTGCATTGATGTAATTCACCTAAG 59.031 38.462 0.00 0.00 40.70 2.18
4069 5349 6.315393 GGCGAACCTTTGTAGAATTGATCTTA 59.685 38.462 0.00 0.00 39.71 2.10
4094 5374 1.091771 AATGACATGGAAGCGAGCGG 61.092 55.000 0.00 0.00 0.00 5.52
4119 5399 9.255304 GGAAGTGATATCAGATAAGAGAACAAC 57.745 37.037 5.42 0.00 0.00 3.32
4137 5417 0.323178 CTGGCAGGCAAGGAAGTGAT 60.323 55.000 6.61 0.00 0.00 3.06
4322 5610 8.448615 CAAAGGAGGTAAATAGAAGGTTAAACG 58.551 37.037 0.00 0.00 0.00 3.60
4407 5721 7.316640 GCACGGAATGTTACTCTGATAGATAT 58.683 38.462 0.00 0.00 0.00 1.63
4422 5736 1.877443 GTTACACTTGGCACGGAATGT 59.123 47.619 0.00 0.00 0.00 2.71
4433 5747 4.516698 AGCTTGTCTTCCATGTTACACTTG 59.483 41.667 0.00 0.00 0.00 3.16
4437 5751 4.318332 CTCAGCTTGTCTTCCATGTTACA 58.682 43.478 0.00 0.00 0.00 2.41
4442 5756 2.008329 GAGCTCAGCTTGTCTTCCATG 58.992 52.381 9.40 0.00 39.88 3.66
4505 5820 6.316390 AGAAACGACTCAAACATGAGAAACTT 59.684 34.615 12.46 1.46 39.14 2.66
4525 5840 2.287608 CCGGGTTCTGCAAAAGAGAAAC 60.288 50.000 0.00 0.00 36.56 2.78
4545 5860 5.415701 TGTATCAAAATCAACTTCAGGCTCC 59.584 40.000 0.00 0.00 0.00 4.70
4814 6129 1.876714 CGCGAATACCACCACCGAG 60.877 63.158 0.00 0.00 0.00 4.63
4904 6219 3.068873 ACAAAGCCCGTAAATTCAAGCAA 59.931 39.130 0.00 0.00 0.00 3.91
4918 6233 3.123050 CAAAACTTGCTACACAAAGCCC 58.877 45.455 0.00 0.00 42.05 5.19
4970 6285 9.113838 AGAATGATCATATAAACAACAGTGTCC 57.886 33.333 9.04 0.00 36.80 4.02
5075 6390 7.012421 GGAGGAACATCCAAATGAACTATGTAC 59.988 40.741 0.46 0.00 39.61 2.90
5079 6394 5.449553 GGGAGGAACATCCAAATGAACTAT 58.550 41.667 7.76 0.00 41.52 2.12
5083 6398 2.292192 GGGGGAGGAACATCCAAATGAA 60.292 50.000 7.76 0.00 41.52 2.57
5098 6413 0.044244 TACAGGAAAGGGAGGGGGAG 59.956 60.000 0.00 0.00 0.00 4.30
5102 6417 1.985895 ACTTGTACAGGAAAGGGAGGG 59.014 52.381 12.54 0.00 0.00 4.30
5125 6440 7.477422 CCATTAATCGAAAAACTGTCTACAACG 59.523 37.037 0.00 0.00 0.00 4.10
5160 6475 1.195115 AAAGATCAGCCAGCGGACTA 58.805 50.000 0.00 0.00 0.00 2.59
5165 6480 5.046910 TCTTTTAAAAAGATCAGCCAGCG 57.953 39.130 1.66 0.00 0.00 5.18
5208 6523 2.896854 GCTCGATGCGCCAATCCA 60.897 61.111 4.18 0.00 0.00 3.41
5209 6524 2.890109 CTGCTCGATGCGCCAATCC 61.890 63.158 4.18 0.00 46.63 3.01
5281 6600 6.663944 ATTGTACGAAGAGACCTTAATTGC 57.336 37.500 0.00 0.00 31.62 3.56
5313 6632 9.213799 ACAAAATTTGTAACAAACATCTGTTGT 57.786 25.926 9.92 0.00 43.27 3.32
5333 6652 7.336427 TGCAAAAAGATGGAAGACAAACAAAAT 59.664 29.630 0.00 0.00 0.00 1.82
5335 6654 6.169094 TGCAAAAAGATGGAAGACAAACAAA 58.831 32.000 0.00 0.00 0.00 2.83
5338 6657 5.580297 TGTTGCAAAAAGATGGAAGACAAAC 59.420 36.000 0.00 0.00 30.90 2.93
5347 6666 5.863397 ACATCGTTATGTTGCAAAAAGATGG 59.137 36.000 27.07 16.68 44.07 3.51
5365 6684 7.449086 TCCCCTTAAATTTTTCTACAACATCGT 59.551 33.333 0.00 0.00 0.00 3.73
5366 6685 7.822658 TCCCCTTAAATTTTTCTACAACATCG 58.177 34.615 0.00 0.00 0.00 3.84
5374 6693 9.304335 CCTTACTGTTCCCCTTAAATTTTTCTA 57.696 33.333 0.00 0.00 0.00 2.10
5382 6701 3.138653 TGCACCTTACTGTTCCCCTTAAA 59.861 43.478 0.00 0.00 0.00 1.52
5394 6713 1.411246 TGTTCGTCACTGCACCTTACT 59.589 47.619 0.00 0.00 0.00 2.24
5400 6719 0.724549 TGTGTTGTTCGTCACTGCAC 59.275 50.000 0.00 0.00 35.82 4.57
5406 6726 2.067013 TGTTTCGTGTGTTGTTCGTCA 58.933 42.857 0.00 0.00 0.00 4.35
5411 6731 3.189495 TGATGTGTGTTTCGTGTGTTGTT 59.811 39.130 0.00 0.00 0.00 2.83
5414 6734 2.744741 TGTGATGTGTGTTTCGTGTGTT 59.255 40.909 0.00 0.00 0.00 3.32
5437 6757 2.048597 GACGCGTGTCCCATGTGA 60.049 61.111 20.70 0.00 39.30 3.58
5438 6758 0.459411 TATGACGCGTGTCCCATGTG 60.459 55.000 25.28 0.00 44.86 3.21
5439 6759 0.459585 GTATGACGCGTGTCCCATGT 60.460 55.000 25.28 9.43 44.86 3.21
5440 6760 1.479420 CGTATGACGCGTGTCCCATG 61.479 60.000 25.28 14.35 44.86 3.66
5441 6761 1.226859 CGTATGACGCGTGTCCCAT 60.227 57.895 25.28 16.75 44.86 4.00
5442 6762 2.179767 CGTATGACGCGTGTCCCA 59.820 61.111 25.28 9.08 44.86 4.37
5443 6763 1.585521 CTCGTATGACGCGTGTCCC 60.586 63.158 25.28 12.59 44.86 4.46
5444 6764 2.222217 GCTCGTATGACGCGTGTCC 61.222 63.158 25.28 1.97 44.86 4.02
5451 6771 1.298413 CGACCCAGCTCGTATGACG 60.298 63.158 0.00 0.00 44.19 4.35
5476 6796 1.908483 GACTGATTTCTCGGCCCCT 59.092 57.895 0.00 0.00 0.00 4.79
5508 6828 5.642491 GTGACATGTTCTAGTAGGGAAAACC 59.358 44.000 0.00 0.00 40.67 3.27
5516 6836 5.714047 TGCTTCAGTGACATGTTCTAGTAG 58.286 41.667 0.00 0.00 0.00 2.57
5521 6841 3.482156 ACTGCTTCAGTGACATGTTCT 57.518 42.857 0.00 0.00 43.63 3.01
5522 6842 4.558538 AAACTGCTTCAGTGACATGTTC 57.441 40.909 0.00 0.00 44.62 3.18
5523 6843 4.989279 AAAACTGCTTCAGTGACATGTT 57.011 36.364 0.00 0.00 44.62 2.71
5547 6867 1.295792 GACTGGCAACGTCAACAAGA 58.704 50.000 2.30 0.00 39.08 3.02
5548 6868 1.013596 TGACTGGCAACGTCAACAAG 58.986 50.000 7.07 0.00 43.55 3.16
5559 6879 2.638480 AGCTGTTTTAGTGACTGGCA 57.362 45.000 0.00 0.00 0.00 4.92
5643 6963 4.961511 TGGTCGAGGTGTGCACGC 62.962 66.667 22.19 22.19 0.00 5.34
5673 6993 2.181975 GTGGTGGTGGTAGCTAGGTAA 58.818 52.381 2.58 0.00 0.00 2.85
5674 6994 1.360162 AGTGGTGGTGGTAGCTAGGTA 59.640 52.381 0.00 0.00 0.00 3.08
5675 6995 0.116541 AGTGGTGGTGGTAGCTAGGT 59.883 55.000 0.00 0.00 0.00 3.08
5676 6996 0.824759 GAGTGGTGGTGGTAGCTAGG 59.175 60.000 0.00 0.00 0.00 3.02
5679 6999 1.362224 ATTGAGTGGTGGTGGTAGCT 58.638 50.000 0.00 0.00 0.00 3.32
5680 7000 2.629051 GTATTGAGTGGTGGTGGTAGC 58.371 52.381 0.00 0.00 0.00 3.58
5681 7001 2.838202 AGGTATTGAGTGGTGGTGGTAG 59.162 50.000 0.00 0.00 0.00 3.18
5682 7002 2.910544 AGGTATTGAGTGGTGGTGGTA 58.089 47.619 0.00 0.00 0.00 3.25
5683 7003 1.742308 AGGTATTGAGTGGTGGTGGT 58.258 50.000 0.00 0.00 0.00 4.16
5684 7004 2.838202 AGTAGGTATTGAGTGGTGGTGG 59.162 50.000 0.00 0.00 0.00 4.61
5685 7005 4.464951 TGTAGTAGGTATTGAGTGGTGGTG 59.535 45.833 0.00 0.00 0.00 4.17
5686 7006 4.465305 GTGTAGTAGGTATTGAGTGGTGGT 59.535 45.833 0.00 0.00 0.00 4.16
5687 7007 4.142004 GGTGTAGTAGGTATTGAGTGGTGG 60.142 50.000 0.00 0.00 0.00 4.61
5688 7008 4.464951 TGGTGTAGTAGGTATTGAGTGGTG 59.535 45.833 0.00 0.00 0.00 4.17
5689 7009 4.680407 TGGTGTAGTAGGTATTGAGTGGT 58.320 43.478 0.00 0.00 0.00 4.16
5690 7010 5.187186 ACTTGGTGTAGTAGGTATTGAGTGG 59.813 44.000 0.00 0.00 0.00 4.00
5691 7011 6.071560 TGACTTGGTGTAGTAGGTATTGAGTG 60.072 42.308 0.00 0.00 0.00 3.51
5692 7012 6.014647 TGACTTGGTGTAGTAGGTATTGAGT 58.985 40.000 0.00 0.00 0.00 3.41
5703 7023 4.974645 TTCATCCTTGACTTGGTGTAGT 57.025 40.909 0.00 0.00 0.00 2.73
5736 7060 1.790387 GCTCAGGATGTTGACACGC 59.210 57.895 0.00 0.00 37.40 5.34
5764 7088 0.976641 TCTGAGATTGCGGTGACCTT 59.023 50.000 0.00 0.00 0.00 3.50
5768 7092 1.489481 ATCCTCTGAGATTGCGGTGA 58.511 50.000 6.17 0.00 0.00 4.02
5772 7096 3.249559 GCCTAAAATCCTCTGAGATTGCG 59.750 47.826 6.17 0.00 36.59 4.85
5780 7104 5.183713 TGTTTCATGTGCCTAAAATCCTCTG 59.816 40.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.