Multiple sequence alignment - TraesCS2D01G310000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G310000 chr2D 100.000 5888 0 0 1 5888 398316682 398310795 0.000000e+00 10874
1 TraesCS2D01G310000 chr2D 79.765 341 63 4 5470 5804 650686228 650685888 5.900000e-60 243
2 TraesCS2D01G310000 chr2D 78.889 360 67 7 5466 5822 11326331 11326684 9.860000e-58 235
3 TraesCS2D01G310000 chr2B 94.495 5068 190 27 882 5886 470917045 470912004 0.000000e+00 7731
4 TraesCS2D01G310000 chr2B 80.547 622 75 31 5038 5630 470903770 470904374 2.520000e-118 436
5 TraesCS2D01G310000 chr2B 83.386 319 48 5 5476 5792 5731626 5731311 2.080000e-74 291
6 TraesCS2D01G310000 chr2B 78.393 361 67 8 5466 5822 17501827 17502180 2.140000e-54 224
7 TraesCS2D01G310000 chr2B 78.638 323 65 3 5468 5790 17094217 17094535 1.660000e-50 211
8 TraesCS2D01G310000 chr2B 90.435 115 8 3 736 849 470917355 470917243 1.320000e-31 148
9 TraesCS2D01G310000 chr2A 94.351 4231 184 25 1700 5888 535417654 535413437 0.000000e+00 6438
10 TraesCS2D01G310000 chr2A 91.280 1055 45 23 676 1712 535419924 535418899 0.000000e+00 1395
11 TraesCS2D01G310000 chr2A 78.889 360 67 7 5466 5822 11981902 11982255 9.860000e-58 235
12 TraesCS2D01G310000 chr2A 76.101 318 70 2 5477 5794 4096810 4096499 1.700000e-35 161
13 TraesCS2D01G310000 chr3A 88.849 556 60 2 54 609 448311916 448312469 0.000000e+00 682
14 TraesCS2D01G310000 chr4D 87.074 557 68 4 54 608 19544136 19544690 1.390000e-175 627
15 TraesCS2D01G310000 chr3D 94.070 371 21 1 54 424 331197753 331198122 3.980000e-156 562
16 TraesCS2D01G310000 chr3D 92.708 288 20 1 54 341 331196337 331196623 1.180000e-111 414
17 TraesCS2D01G310000 chr3D 91.379 116 10 0 493 608 331198132 331198247 6.110000e-35 159
18 TraesCS2D01G310000 chr6B 89.157 332 34 2 206 536 564001390 564001720 4.250000e-111 412
19 TraesCS2D01G310000 chr6D 81.707 410 39 13 206 609 377549557 377549936 5.730000e-80 309
20 TraesCS2D01G310000 chr5D 77.934 213 40 7 378 587 539515325 539515533 6.190000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G310000 chr2D 398310795 398316682 5887 True 10874.000000 10874 100.0000 1 5888 1 chr2D.!!$R1 5887
1 TraesCS2D01G310000 chr2B 470912004 470917355 5351 True 3939.500000 7731 92.4650 736 5886 2 chr2B.!!$R2 5150
2 TraesCS2D01G310000 chr2B 470903770 470904374 604 False 436.000000 436 80.5470 5038 5630 1 chr2B.!!$F3 592
3 TraesCS2D01G310000 chr2A 535413437 535419924 6487 True 3916.500000 6438 92.8155 676 5888 2 chr2A.!!$R2 5212
4 TraesCS2D01G310000 chr3A 448311916 448312469 553 False 682.000000 682 88.8490 54 609 1 chr3A.!!$F1 555
5 TraesCS2D01G310000 chr4D 19544136 19544690 554 False 627.000000 627 87.0740 54 608 1 chr4D.!!$F1 554
6 TraesCS2D01G310000 chr3D 331196337 331198247 1910 False 378.333333 562 92.7190 54 608 3 chr3D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 1846 0.526524 GATGACTTCCCGTCTGCGAG 60.527 60.000 0.00 0.0 43.25 5.03 F
993 2598 0.538584 CTGCACAGAGAGGCACCATA 59.461 55.000 0.00 0.0 35.86 2.74 F
1373 2992 0.546267 ACTCCCACTCACCTCATGCT 60.546 55.000 0.00 0.0 0.00 3.79 F
1862 4744 1.549170 AGTTGATGTCACGGGAGGTAC 59.451 52.381 0.00 0.0 0.00 3.34 F
2053 4935 2.046280 AAAGAGTAGGCAGGGAAGGT 57.954 50.000 0.00 0.0 0.00 3.50 F
3665 6574 1.338769 GGAAGTACCCGAGTGCACAAT 60.339 52.381 21.04 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 2992 0.986527 TGAATCTGAAGAGCAGGCCA 59.013 50.000 5.01 0.0 44.98 5.36 R
2442 5324 1.019673 CTGCCACTTTGATCATCCCG 58.980 55.000 0.00 0.0 0.00 5.14 R
2935 5819 4.630069 CACCCAGTATCTTTTTCTGGTACG 59.370 45.833 9.15 0.0 44.92 3.67 R
3584 6493 4.440525 GCAATGAAATCGGGATGATGTTGT 60.441 41.667 0.00 0.0 37.39 3.32 R
4037 6946 2.571212 CACAAGCACCTTGACCACTAA 58.429 47.619 11.56 0.0 43.42 2.24 R
5077 8041 0.449388 CGCTCTGGTTGGCATCTTTC 59.551 55.000 0.00 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.536761 TAGGTGGTGGAAACGACAAG 57.463 50.000 0.00 0.00 0.00 3.16
20 21 0.544697 AGGTGGTGGAAACGACAAGT 59.455 50.000 0.00 0.00 0.00 3.16
21 22 0.661020 GGTGGTGGAAACGACAAGTG 59.339 55.000 0.00 0.00 0.00 3.16
22 23 1.658994 GTGGTGGAAACGACAAGTGA 58.341 50.000 0.00 0.00 0.00 3.41
23 24 2.011222 GTGGTGGAAACGACAAGTGAA 58.989 47.619 0.00 0.00 0.00 3.18
24 25 2.616842 GTGGTGGAAACGACAAGTGAAT 59.383 45.455 0.00 0.00 0.00 2.57
25 26 2.616376 TGGTGGAAACGACAAGTGAATG 59.384 45.455 0.00 0.00 0.00 2.67
26 27 2.875933 GGTGGAAACGACAAGTGAATGA 59.124 45.455 0.00 0.00 0.00 2.57
27 28 3.314080 GGTGGAAACGACAAGTGAATGAA 59.686 43.478 0.00 0.00 0.00 2.57
28 29 4.527564 GTGGAAACGACAAGTGAATGAAG 58.472 43.478 0.00 0.00 0.00 3.02
29 30 4.272504 GTGGAAACGACAAGTGAATGAAGA 59.727 41.667 0.00 0.00 0.00 2.87
30 31 4.878971 TGGAAACGACAAGTGAATGAAGAA 59.121 37.500 0.00 0.00 0.00 2.52
31 32 5.205565 GGAAACGACAAGTGAATGAAGAAC 58.794 41.667 0.00 0.00 0.00 3.01
32 33 5.007724 GGAAACGACAAGTGAATGAAGAACT 59.992 40.000 0.00 0.00 0.00 3.01
33 34 6.202188 GGAAACGACAAGTGAATGAAGAACTA 59.798 38.462 0.00 0.00 0.00 2.24
34 35 7.254658 GGAAACGACAAGTGAATGAAGAACTAA 60.255 37.037 0.00 0.00 0.00 2.24
35 36 7.548196 AACGACAAGTGAATGAAGAACTAAA 57.452 32.000 0.00 0.00 0.00 1.85
36 37 7.178712 ACGACAAGTGAATGAAGAACTAAAG 57.821 36.000 0.00 0.00 0.00 1.85
37 38 6.074005 CGACAAGTGAATGAAGAACTAAAGC 58.926 40.000 0.00 0.00 0.00 3.51
38 39 6.292865 CGACAAGTGAATGAAGAACTAAAGCA 60.293 38.462 0.00 0.00 0.00 3.91
39 40 7.516198 ACAAGTGAATGAAGAACTAAAGCAT 57.484 32.000 0.00 0.00 0.00 3.79
40 41 7.365741 ACAAGTGAATGAAGAACTAAAGCATG 58.634 34.615 0.00 0.00 0.00 4.06
41 42 6.506500 AGTGAATGAAGAACTAAAGCATGG 57.493 37.500 0.00 0.00 0.00 3.66
42 43 6.006449 AGTGAATGAAGAACTAAAGCATGGT 58.994 36.000 0.00 0.00 0.00 3.55
43 44 7.168219 AGTGAATGAAGAACTAAAGCATGGTA 58.832 34.615 0.00 0.00 0.00 3.25
44 45 7.335422 AGTGAATGAAGAACTAAAGCATGGTAG 59.665 37.037 0.00 0.00 0.00 3.18
45 46 6.094048 TGAATGAAGAACTAAAGCATGGTAGC 59.906 38.462 0.00 0.00 0.00 3.58
46 47 4.905429 TGAAGAACTAAAGCATGGTAGCA 58.095 39.130 0.00 0.00 36.85 3.49
47 48 5.312895 TGAAGAACTAAAGCATGGTAGCAA 58.687 37.500 0.00 0.00 36.85 3.91
48 49 5.412594 TGAAGAACTAAAGCATGGTAGCAAG 59.587 40.000 0.00 0.00 36.85 4.01
49 50 5.165961 AGAACTAAAGCATGGTAGCAAGA 57.834 39.130 0.00 0.00 36.85 3.02
50 51 4.938226 AGAACTAAAGCATGGTAGCAAGAC 59.062 41.667 0.00 0.00 36.85 3.01
51 52 3.262420 ACTAAAGCATGGTAGCAAGACG 58.738 45.455 0.00 0.00 36.85 4.18
52 53 2.185004 AAAGCATGGTAGCAAGACGT 57.815 45.000 0.00 0.00 36.85 4.34
62 63 2.551270 CAAGACGTTCTGGCGTGC 59.449 61.111 0.00 0.00 45.79 5.34
103 104 2.181021 GTGGCGTTCGATCCTCGT 59.819 61.111 0.00 0.00 41.35 4.18
174 1591 4.702081 GACGACGCCTGCTCGTGT 62.702 66.667 17.05 0.00 44.28 4.49
186 1603 3.071837 TCGTGTGCGGGGATGCTA 61.072 61.111 0.00 0.00 38.89 3.49
428 1846 0.526524 GATGACTTCCCGTCTGCGAG 60.527 60.000 0.00 0.00 43.25 5.03
509 1927 3.637273 GGGTGGAAGACGGTGGCT 61.637 66.667 0.00 0.00 0.00 4.75
518 1936 4.715130 ACGGTGGCTGGCTCCCTA 62.715 66.667 15.52 0.00 0.00 3.53
566 1984 4.475345 TGTTAAGGGGTGCTTTGTAATGT 58.525 39.130 0.00 0.00 0.00 2.71
576 1994 4.515191 GTGCTTTGTAATGTCTGTTCCTGA 59.485 41.667 0.00 0.00 0.00 3.86
643 2061 6.413018 AAAAAGACGTTTACCCTTATAGCG 57.587 37.500 0.00 0.00 0.00 4.26
644 2062 4.989279 AAGACGTTTACCCTTATAGCGA 57.011 40.909 0.00 0.00 0.00 4.93
645 2063 4.298744 AGACGTTTACCCTTATAGCGAC 57.701 45.455 0.00 0.00 0.00 5.19
646 2064 3.038710 GACGTTTACCCTTATAGCGACG 58.961 50.000 0.00 0.00 35.59 5.12
647 2065 2.682856 ACGTTTACCCTTATAGCGACGA 59.317 45.455 0.00 0.00 33.86 4.20
648 2066 3.128589 ACGTTTACCCTTATAGCGACGAA 59.871 43.478 0.00 0.00 33.86 3.85
649 2067 4.202050 ACGTTTACCCTTATAGCGACGAAT 60.202 41.667 0.00 0.00 33.86 3.34
650 2068 5.008613 ACGTTTACCCTTATAGCGACGAATA 59.991 40.000 0.00 0.00 33.86 1.75
651 2069 5.566774 CGTTTACCCTTATAGCGACGAATAG 59.433 44.000 0.00 0.00 0.00 1.73
652 2070 5.633830 TTACCCTTATAGCGACGAATAGG 57.366 43.478 0.00 0.00 0.00 2.57
653 2071 3.759581 ACCCTTATAGCGACGAATAGGA 58.240 45.455 0.00 0.00 0.00 2.94
654 2072 4.342359 ACCCTTATAGCGACGAATAGGAT 58.658 43.478 0.00 0.00 0.00 3.24
655 2073 4.771054 ACCCTTATAGCGACGAATAGGATT 59.229 41.667 0.00 0.00 0.00 3.01
656 2074 5.245526 ACCCTTATAGCGACGAATAGGATTT 59.754 40.000 0.00 0.00 0.00 2.17
657 2075 6.435277 ACCCTTATAGCGACGAATAGGATTTA 59.565 38.462 0.00 0.00 0.00 1.40
658 2076 6.750963 CCCTTATAGCGACGAATAGGATTTAC 59.249 42.308 0.00 0.00 0.00 2.01
659 2077 6.750963 CCTTATAGCGACGAATAGGATTTACC 59.249 42.308 0.00 0.00 39.35 2.85
660 2078 3.382048 AGCGACGAATAGGATTTACCC 57.618 47.619 0.00 0.00 40.05 3.69
661 2079 2.963782 AGCGACGAATAGGATTTACCCT 59.036 45.455 0.00 0.00 40.05 4.34
662 2080 3.387050 AGCGACGAATAGGATTTACCCTT 59.613 43.478 0.00 0.00 40.05 3.95
663 2081 4.124970 GCGACGAATAGGATTTACCCTTT 58.875 43.478 0.00 0.00 40.05 3.11
664 2082 4.573607 GCGACGAATAGGATTTACCCTTTT 59.426 41.667 0.00 0.00 40.05 2.27
665 2083 5.065602 GCGACGAATAGGATTTACCCTTTTT 59.934 40.000 0.00 0.00 40.05 1.94
734 2152 2.258013 CCACGCGGGCTGAAGAAAA 61.258 57.895 12.47 0.00 0.00 2.29
877 2307 7.187824 ACTGGCAGAGTAGATATTTCTTTCA 57.812 36.000 23.66 0.00 30.86 2.69
879 2309 7.768120 ACTGGCAGAGTAGATATTTCTTTCAAG 59.232 37.037 23.66 0.00 30.86 3.02
993 2598 0.538584 CTGCACAGAGAGGCACCATA 59.461 55.000 0.00 0.00 35.86 2.74
1119 2724 0.813610 TGCACTTCAACCACGACCTG 60.814 55.000 0.00 0.00 0.00 4.00
1209 2828 2.600173 ACGGGTGGCAATTGGGTG 60.600 61.111 7.72 0.00 0.00 4.61
1210 2829 3.381136 CGGGTGGCAATTGGGTGG 61.381 66.667 7.72 0.00 0.00 4.61
1211 2830 3.002583 GGGTGGCAATTGGGTGGG 61.003 66.667 7.72 0.00 0.00 4.61
1212 2831 2.203773 GGTGGCAATTGGGTGGGT 60.204 61.111 7.72 0.00 0.00 4.51
1213 2832 2.282783 GGTGGCAATTGGGTGGGTC 61.283 63.158 7.72 0.00 0.00 4.46
1214 2833 1.228862 GTGGCAATTGGGTGGGTCT 60.229 57.895 7.72 0.00 0.00 3.85
1215 2834 1.228831 TGGCAATTGGGTGGGTCTG 60.229 57.895 7.72 0.00 0.00 3.51
1373 2992 0.546267 ACTCCCACTCACCTCATGCT 60.546 55.000 0.00 0.00 0.00 3.79
1428 3047 4.943093 GCAATGCTGGGGTAATTTTCAATT 59.057 37.500 0.00 0.00 0.00 2.32
1639 3259 4.965532 AGGAATGAAGGTAGCTGATACAGT 59.034 41.667 5.36 0.00 35.96 3.55
1643 3268 7.600752 GGAATGAAGGTAGCTGATACAGTATTC 59.399 40.741 5.36 8.57 35.96 1.75
1674 3299 9.231297 TCTCTATATTTCTTGGTTTGGAAAGTG 57.769 33.333 0.00 0.00 35.37 3.16
1712 3337 9.906660 TTTTTGGTATAATGAACATTGACAGAC 57.093 29.630 9.87 0.00 32.50 3.51
1713 3338 6.902224 TGGTATAATGAACATTGACAGACG 57.098 37.500 9.87 0.00 32.50 4.18
1862 4744 1.549170 AGTTGATGTCACGGGAGGTAC 59.451 52.381 0.00 0.00 0.00 3.34
1903 4785 9.018582 TCTATGACTATGAATGTCTCTGTATGG 57.981 37.037 0.00 0.00 35.63 2.74
2026 4908 4.436584 GCTGTCGGAAACATGATTTCTGAG 60.437 45.833 22.08 16.16 42.49 3.35
2053 4935 2.046280 AAAGAGTAGGCAGGGAAGGT 57.954 50.000 0.00 0.00 0.00 3.50
2054 4936 2.046280 AAGAGTAGGCAGGGAAGGTT 57.954 50.000 0.00 0.00 0.00 3.50
2080 4962 3.790089 AGGATTGAAAACGGGAGAAGT 57.210 42.857 0.00 0.00 0.00 3.01
2104 4986 5.576447 CTGTAAACAGTTTGGAGGTTGTT 57.424 39.130 8.93 0.00 39.09 2.83
2161 5043 5.106555 ACCTTTCTTTGTGACTAATCATGCG 60.107 40.000 0.00 0.00 37.14 4.73
2369 5251 8.565416 GGTATGTTTTAGTGCTGTAAAAGAAGT 58.435 33.333 4.61 0.00 33.54 3.01
2379 5261 8.691797 AGTGCTGTAAAAGAAGTTTTTCCATTA 58.308 29.630 0.00 0.00 37.12 1.90
2442 5324 4.691216 ACTTTGACGAGAAACAAGCTATCC 59.309 41.667 0.00 0.00 0.00 2.59
2803 5686 5.870978 AGTTTGATGCAAAACATGGAATAGC 59.129 36.000 14.70 0.00 41.56 2.97
2843 5726 3.257375 TGTACGTACTGGAGAAACTGCAT 59.743 43.478 25.12 0.00 30.16 3.96
2935 5819 7.162082 TCTAATTTCCAGAACTCAAAGGAGAC 58.838 38.462 0.00 0.00 44.26 3.36
3026 5910 8.564574 GTCATCAGGTGTCACAAGTATTTTTAA 58.435 33.333 5.12 0.00 0.00 1.52
3482 6391 5.767269 AGTAGATGATCTAATGAGCACACG 58.233 41.667 3.31 0.00 41.69 4.49
3486 6395 6.753180 AGATGATCTAATGAGCACACGTTAT 58.247 36.000 0.00 0.00 41.69 1.89
3532 6441 6.594788 TGCTAATTTCTGGAGAGCAAAAAT 57.405 33.333 0.00 0.00 40.07 1.82
3584 6493 3.202818 ACAAACCATGGCATATGAGAGGA 59.797 43.478 13.04 0.00 0.00 3.71
3665 6574 1.338769 GGAAGTACCCGAGTGCACAAT 60.339 52.381 21.04 0.00 0.00 2.71
3669 6578 3.596214 AGTACCCGAGTGCACAATAAAG 58.404 45.455 21.04 4.86 0.00 1.85
3791 6700 2.998670 CTGTGTGCAATCTCGATGTCTT 59.001 45.455 0.00 0.00 0.00 3.01
3854 6763 9.035607 GTGTACTTGGTGTCATCTTGATATTAG 57.964 37.037 0.00 0.00 0.00 1.73
3887 6796 7.251281 GCCCTTATAAAAACAGAGTGAATGAC 58.749 38.462 0.00 0.00 0.00 3.06
3888 6797 7.094377 GCCCTTATAAAAACAGAGTGAATGACA 60.094 37.037 0.00 0.00 0.00 3.58
4157 7066 6.803320 ACACTGATAAATGCACTGATTTTTCG 59.197 34.615 0.00 0.00 30.27 3.46
4158 7067 6.803320 CACTGATAAATGCACTGATTTTTCGT 59.197 34.615 0.00 0.00 30.27 3.85
4188 7097 4.500375 GCCATAACTCCTTTCATTCCATGC 60.500 45.833 0.00 0.00 0.00 4.06
4249 7158 6.210984 GCTACCCTACCACACTAATAGCTAAT 59.789 42.308 0.00 0.00 32.80 1.73
4298 7207 6.019075 CGTCATCGAAAAGGTTATCAATAGCA 60.019 38.462 0.00 0.00 39.71 3.49
4328 7237 7.880195 AGTAGCTCTTTTGATTCAGTTACATGT 59.120 33.333 2.69 2.69 0.00 3.21
4329 7238 7.516198 AGCTCTTTTGATTCAGTTACATGTT 57.484 32.000 2.30 0.00 0.00 2.71
4330 7239 8.621532 AGCTCTTTTGATTCAGTTACATGTTA 57.378 30.769 2.30 0.00 0.00 2.41
4334 7243 8.279800 TCTTTTGATTCAGTTACATGTTACACG 58.720 33.333 16.65 7.74 0.00 4.49
4344 7253 3.799366 ACATGTTACACGTTTGTCTGGA 58.201 40.909 0.00 0.00 37.15 3.86
4350 7259 3.757745 ACACGTTTGTCTGGAAAACTG 57.242 42.857 0.00 0.00 35.75 3.16
4352 7261 3.119990 ACACGTTTGTCTGGAAAACTGTG 60.120 43.478 15.57 15.57 41.83 3.66
4353 7262 3.126171 CACGTTTGTCTGGAAAACTGTGA 59.874 43.478 13.58 0.00 40.42 3.58
4355 7264 4.201910 ACGTTTGTCTGGAAAACTGTGATG 60.202 41.667 0.00 0.00 35.75 3.07
4360 7269 4.102524 TGTCTGGAAAACTGTGATGTACCT 59.897 41.667 0.00 0.00 0.00 3.08
4435 7344 6.389091 GTCAAATGACAATGCAAGTTATGGA 58.611 36.000 8.63 0.00 44.18 3.41
4466 7375 1.009829 CAACGGCTGCTATGAAGACC 58.990 55.000 0.00 0.00 0.00 3.85
4511 7420 5.393866 ACCCATCAAAGGTTAGTGAAACAT 58.606 37.500 0.00 0.00 40.08 2.71
4513 7422 6.015434 ACCCATCAAAGGTTAGTGAAACATTC 60.015 38.462 0.00 0.00 41.02 2.67
4520 7429 6.575162 AGGTTAGTGAAACATTCATGGAAC 57.425 37.500 0.00 2.27 42.47 3.62
4529 7438 5.818136 AACATTCATGGAACGATGGTTAG 57.182 39.130 0.00 0.00 36.24 2.34
4548 7457 9.607333 ATGGTTAGAATAATCCTATGTCTCTCA 57.393 33.333 0.00 0.00 0.00 3.27
4569 7478 8.556213 TCTCAAAATAAGCCAATTAGTAACGT 57.444 30.769 0.00 0.00 0.00 3.99
4570 7479 8.662141 TCTCAAAATAAGCCAATTAGTAACGTC 58.338 33.333 0.00 0.00 0.00 4.34
4680 7589 3.307059 CCAAGTCTTTTCTCACCTCCGAT 60.307 47.826 0.00 0.00 0.00 4.18
4797 7709 9.502091 GGTAACTATATTTGCACCTTCATCATA 57.498 33.333 0.00 0.00 0.00 2.15
4884 7799 5.163943 GCTTTCAGTTTCAGGTATTCGAGTC 60.164 44.000 0.00 0.00 0.00 3.36
4952 7887 5.146010 TGAATAATTTTGTGGGCAAGTCC 57.854 39.130 0.00 0.00 35.82 3.85
4979 7933 8.147058 GTCAAGATATGAGCTGGAAGAAAGATA 58.853 37.037 0.00 0.00 39.19 1.98
4994 7948 9.065798 GGAAGAAAGATATACTACTACTTCCGT 57.934 37.037 0.00 0.00 38.53 4.69
5012 7966 7.136772 ACTTCCGTTTAAACATTGCTCTTAAC 58.863 34.615 18.07 0.00 0.00 2.01
5013 7967 6.621316 TCCGTTTAAACATTGCTCTTAACA 57.379 33.333 18.07 0.00 0.00 2.41
5134 8099 1.659098 GGAAGTTCGTACAGGCATTCG 59.341 52.381 0.00 0.00 0.00 3.34
5251 8223 1.895707 GGAGAAGCATGATGCCCGG 60.896 63.158 14.72 0.00 46.52 5.73
5617 8619 2.880890 AGAAGCACTTGATGTTCACCAC 59.119 45.455 0.00 0.00 0.00 4.16
5623 8625 0.251121 TTGATGTTCACCACGGCCAT 60.251 50.000 2.24 0.00 0.00 4.40
5792 8794 3.849951 CTCCCGATGTCCCCCACG 61.850 72.222 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.764134 ACTTGTCGTTTCCACCACCTA 59.236 47.619 0.00 0.00 0.00 3.08
1 2 0.544697 ACTTGTCGTTTCCACCACCT 59.455 50.000 0.00 0.00 0.00 4.00
2 3 0.661020 CACTTGTCGTTTCCACCACC 59.339 55.000 0.00 0.00 0.00 4.61
3 4 1.658994 TCACTTGTCGTTTCCACCAC 58.341 50.000 0.00 0.00 0.00 4.16
4 5 2.404923 TTCACTTGTCGTTTCCACCA 57.595 45.000 0.00 0.00 0.00 4.17
5 6 2.875933 TCATTCACTTGTCGTTTCCACC 59.124 45.455 0.00 0.00 0.00 4.61
6 7 4.272504 TCTTCATTCACTTGTCGTTTCCAC 59.727 41.667 0.00 0.00 0.00 4.02
7 8 4.447290 TCTTCATTCACTTGTCGTTTCCA 58.553 39.130 0.00 0.00 0.00 3.53
8 9 5.007724 AGTTCTTCATTCACTTGTCGTTTCC 59.992 40.000 0.00 0.00 0.00 3.13
9 10 6.049263 AGTTCTTCATTCACTTGTCGTTTC 57.951 37.500 0.00 0.00 0.00 2.78
10 11 7.548196 TTAGTTCTTCATTCACTTGTCGTTT 57.452 32.000 0.00 0.00 0.00 3.60
11 12 7.548196 TTTAGTTCTTCATTCACTTGTCGTT 57.452 32.000 0.00 0.00 0.00 3.85
12 13 6.292919 GCTTTAGTTCTTCATTCACTTGTCGT 60.293 38.462 0.00 0.00 0.00 4.34
13 14 6.074005 GCTTTAGTTCTTCATTCACTTGTCG 58.926 40.000 0.00 0.00 0.00 4.35
14 15 6.959361 TGCTTTAGTTCTTCATTCACTTGTC 58.041 36.000 0.00 0.00 0.00 3.18
15 16 6.942532 TGCTTTAGTTCTTCATTCACTTGT 57.057 33.333 0.00 0.00 0.00 3.16
16 17 6.805271 CCATGCTTTAGTTCTTCATTCACTTG 59.195 38.462 0.00 0.00 0.00 3.16
17 18 6.491403 ACCATGCTTTAGTTCTTCATTCACTT 59.509 34.615 0.00 0.00 0.00 3.16
18 19 6.006449 ACCATGCTTTAGTTCTTCATTCACT 58.994 36.000 0.00 0.00 0.00 3.41
19 20 6.259550 ACCATGCTTTAGTTCTTCATTCAC 57.740 37.500 0.00 0.00 0.00 3.18
20 21 6.094048 GCTACCATGCTTTAGTTCTTCATTCA 59.906 38.462 0.00 0.00 0.00 2.57
21 22 6.094048 TGCTACCATGCTTTAGTTCTTCATTC 59.906 38.462 0.00 0.00 0.00 2.67
22 23 5.945784 TGCTACCATGCTTTAGTTCTTCATT 59.054 36.000 0.00 0.00 0.00 2.57
23 24 5.500234 TGCTACCATGCTTTAGTTCTTCAT 58.500 37.500 0.00 0.00 0.00 2.57
24 25 4.905429 TGCTACCATGCTTTAGTTCTTCA 58.095 39.130 0.00 0.00 0.00 3.02
25 26 5.643777 TCTTGCTACCATGCTTTAGTTCTTC 59.356 40.000 0.00 0.00 0.00 2.87
26 27 5.412904 GTCTTGCTACCATGCTTTAGTTCTT 59.587 40.000 0.00 0.00 0.00 2.52
27 28 4.938226 GTCTTGCTACCATGCTTTAGTTCT 59.062 41.667 0.00 0.00 0.00 3.01
28 29 4.201724 CGTCTTGCTACCATGCTTTAGTTC 60.202 45.833 0.00 0.00 0.00 3.01
29 30 3.684788 CGTCTTGCTACCATGCTTTAGTT 59.315 43.478 0.00 0.00 0.00 2.24
30 31 3.262420 CGTCTTGCTACCATGCTTTAGT 58.738 45.455 0.00 0.00 0.00 2.24
31 32 3.262420 ACGTCTTGCTACCATGCTTTAG 58.738 45.455 0.00 0.00 0.00 1.85
32 33 3.328382 ACGTCTTGCTACCATGCTTTA 57.672 42.857 0.00 0.00 0.00 1.85
33 34 2.185004 ACGTCTTGCTACCATGCTTT 57.815 45.000 0.00 0.00 0.00 3.51
34 35 2.076863 GAACGTCTTGCTACCATGCTT 58.923 47.619 0.00 0.00 0.00 3.91
35 36 1.276421 AGAACGTCTTGCTACCATGCT 59.724 47.619 0.00 0.00 0.00 3.79
36 37 1.394917 CAGAACGTCTTGCTACCATGC 59.605 52.381 0.00 0.00 0.00 4.06
37 38 2.002586 CCAGAACGTCTTGCTACCATG 58.997 52.381 0.00 0.00 0.00 3.66
38 39 1.676014 GCCAGAACGTCTTGCTACCAT 60.676 52.381 0.00 0.00 32.92 3.55
39 40 0.320421 GCCAGAACGTCTTGCTACCA 60.320 55.000 0.00 0.00 32.92 3.25
40 41 1.352156 CGCCAGAACGTCTTGCTACC 61.352 60.000 0.00 0.00 33.44 3.18
41 42 0.666577 ACGCCAGAACGTCTTGCTAC 60.667 55.000 0.00 0.00 44.43 3.58
42 43 0.666274 CACGCCAGAACGTCTTGCTA 60.666 55.000 0.00 0.00 46.34 3.49
43 44 1.956170 CACGCCAGAACGTCTTGCT 60.956 57.895 0.00 0.00 46.34 3.91
44 45 2.551270 CACGCCAGAACGTCTTGC 59.449 61.111 0.00 0.00 46.34 4.01
45 46 1.891060 GAGCACGCCAGAACGTCTTG 61.891 60.000 0.00 0.00 46.34 3.02
46 47 1.664965 GAGCACGCCAGAACGTCTT 60.665 57.895 0.00 0.00 46.34 3.01
47 48 2.049063 GAGCACGCCAGAACGTCT 60.049 61.111 0.00 0.00 46.34 4.18
48 49 2.049063 AGAGCACGCCAGAACGTC 60.049 61.111 0.00 0.00 46.34 4.34
50 51 3.782244 GCAGAGCACGCCAGAACG 61.782 66.667 0.00 0.00 39.50 3.95
68 69 1.313812 ACCTACTCCCTGACGAAGCG 61.314 60.000 0.00 0.00 0.00 4.68
103 104 0.395724 TCGCCAGAGCTACAGATCCA 60.396 55.000 0.00 0.00 36.60 3.41
111 112 1.067565 CACAAAGTCTCGCCAGAGCTA 60.068 52.381 0.00 0.00 44.02 3.32
114 115 1.294659 GGCACAAAGTCTCGCCAGAG 61.295 60.000 0.00 0.00 44.25 3.35
273 1691 4.341502 CGCCAAGCCCAACAACGG 62.342 66.667 0.00 0.00 0.00 4.44
329 1747 5.447279 CCGAAATCAAAGGTCCATAAACTCG 60.447 44.000 0.00 0.00 0.00 4.18
341 1759 0.248621 GCCGCATCCGAAATCAAAGG 60.249 55.000 0.00 0.00 36.29 3.11
369 1787 1.445095 CATCGCCCTGGAGAAGAGG 59.555 63.158 0.00 0.00 0.00 3.69
428 1846 2.353323 CCGGGCTAACCTTAGTTGTTC 58.647 52.381 0.00 0.00 36.68 3.18
483 1901 2.433664 CTTCCACCCGCACGTACC 60.434 66.667 0.00 0.00 0.00 3.34
485 1903 2.652530 GTCTTCCACCCGCACGTA 59.347 61.111 0.00 0.00 0.00 3.57
509 1927 1.742308 ACAAAGTCCTTAGGGAGCCA 58.258 50.000 0.00 0.00 43.12 4.75
518 1936 9.574516 AAAGACAGATAATACAACAAAGTCCTT 57.425 29.630 0.00 0.00 0.00 3.36
566 1984 8.717717 ACATTGGATCTATTAATCAGGAACAGA 58.282 33.333 0.00 0.00 0.00 3.41
620 2038 6.091305 GTCGCTATAAGGGTAAACGTCTTTTT 59.909 38.462 0.00 0.00 0.00 1.94
621 2039 5.578336 GTCGCTATAAGGGTAAACGTCTTTT 59.422 40.000 0.00 0.00 0.00 2.27
622 2040 5.105063 GTCGCTATAAGGGTAAACGTCTTT 58.895 41.667 0.00 0.00 0.00 2.52
623 2041 4.676546 GTCGCTATAAGGGTAAACGTCTT 58.323 43.478 0.00 0.00 0.00 3.01
624 2042 3.242870 CGTCGCTATAAGGGTAAACGTCT 60.243 47.826 0.00 0.00 0.00 4.18
625 2043 3.038710 CGTCGCTATAAGGGTAAACGTC 58.961 50.000 0.00 0.00 0.00 4.34
626 2044 2.682856 TCGTCGCTATAAGGGTAAACGT 59.317 45.455 0.00 0.00 31.27 3.99
627 2045 3.338818 TCGTCGCTATAAGGGTAAACG 57.661 47.619 0.00 0.00 30.76 3.60
628 2046 5.860716 CCTATTCGTCGCTATAAGGGTAAAC 59.139 44.000 0.00 0.00 0.00 2.01
629 2047 5.769662 TCCTATTCGTCGCTATAAGGGTAAA 59.230 40.000 0.00 0.00 0.00 2.01
630 2048 5.316167 TCCTATTCGTCGCTATAAGGGTAA 58.684 41.667 0.00 0.00 0.00 2.85
631 2049 4.910195 TCCTATTCGTCGCTATAAGGGTA 58.090 43.478 0.00 0.00 0.00 3.69
632 2050 3.759581 TCCTATTCGTCGCTATAAGGGT 58.240 45.455 0.00 0.00 0.00 4.34
633 2051 4.985538 ATCCTATTCGTCGCTATAAGGG 57.014 45.455 0.00 0.00 0.00 3.95
634 2052 6.750963 GGTAAATCCTATTCGTCGCTATAAGG 59.249 42.308 0.00 0.00 0.00 2.69
635 2053 6.750963 GGGTAAATCCTATTCGTCGCTATAAG 59.249 42.308 0.00 0.00 36.25 1.73
636 2054 6.435277 AGGGTAAATCCTATTCGTCGCTATAA 59.565 38.462 0.00 0.00 34.92 0.98
637 2055 5.948162 AGGGTAAATCCTATTCGTCGCTATA 59.052 40.000 0.00 0.00 34.92 1.31
638 2056 4.771054 AGGGTAAATCCTATTCGTCGCTAT 59.229 41.667 0.00 0.00 34.92 2.97
639 2057 4.147321 AGGGTAAATCCTATTCGTCGCTA 58.853 43.478 0.00 0.00 34.92 4.26
640 2058 2.963782 AGGGTAAATCCTATTCGTCGCT 59.036 45.455 0.00 0.00 34.92 4.93
641 2059 3.382048 AGGGTAAATCCTATTCGTCGC 57.618 47.619 0.00 0.00 34.92 5.19
642 2060 6.673154 AAAAAGGGTAAATCCTATTCGTCG 57.327 37.500 0.00 0.00 35.80 5.12
664 2082 5.720486 AATCCTATTCGGTCCCCTAAAAA 57.280 39.130 0.00 0.00 0.00 1.94
665 2083 5.720486 AAATCCTATTCGGTCCCCTAAAA 57.280 39.130 0.00 0.00 0.00 1.52
666 2084 5.072193 GGTAAATCCTATTCGGTCCCCTAAA 59.928 44.000 0.00 0.00 0.00 1.85
667 2085 4.594491 GGTAAATCCTATTCGGTCCCCTAA 59.406 45.833 0.00 0.00 0.00 2.69
668 2086 4.162651 GGTAAATCCTATTCGGTCCCCTA 58.837 47.826 0.00 0.00 0.00 3.53
669 2087 2.977580 GGTAAATCCTATTCGGTCCCCT 59.022 50.000 0.00 0.00 0.00 4.79
670 2088 2.039480 GGGTAAATCCTATTCGGTCCCC 59.961 54.545 0.00 0.00 36.25 4.81
671 2089 2.289257 CGGGTAAATCCTATTCGGTCCC 60.289 54.545 0.00 0.00 36.25 4.46
672 2090 2.869237 GCGGGTAAATCCTATTCGGTCC 60.869 54.545 0.00 0.00 36.25 4.46
673 2091 2.224113 TGCGGGTAAATCCTATTCGGTC 60.224 50.000 0.00 0.00 36.25 4.79
674 2092 1.764134 TGCGGGTAAATCCTATTCGGT 59.236 47.619 0.00 0.00 36.25 4.69
679 2097 2.158534 TGCCATTGCGGGTAAATCCTAT 60.159 45.455 0.00 0.00 41.78 2.57
848 2278 0.757188 ATCTACTCTGCCAGTCCCGG 60.757 60.000 0.00 0.00 36.43 5.73
983 2588 1.674221 GCATCCTCGATATGGTGCCTC 60.674 57.143 9.27 0.00 0.00 4.70
989 2594 0.459237 GAGCGGCATCCTCGATATGG 60.459 60.000 1.45 0.00 0.00 2.74
993 2598 3.620785 GGGAGCGGCATCCTCGAT 61.621 66.667 15.04 0.00 39.50 3.59
1119 2724 1.949257 CAACTTCTTGGTGGCGGAC 59.051 57.895 0.00 0.00 0.00 4.79
1330 2949 2.678934 TTGAGGACCGTCTCCCCG 60.679 66.667 0.00 0.00 40.53 5.73
1373 2992 0.986527 TGAATCTGAAGAGCAGGCCA 59.013 50.000 5.01 0.00 44.98 5.36
1477 3096 5.655090 TCCTCCAACTCGATCTTGTACAATA 59.345 40.000 9.13 1.90 0.00 1.90
1674 3299 9.396022 TCATTATACCAAAAACTTCTCCTGATC 57.604 33.333 0.00 0.00 0.00 2.92
1712 3337 5.174943 GGTTTAGGTTTCAGAATTGTTTGCG 59.825 40.000 0.00 0.00 0.00 4.85
1713 3338 6.200854 CAGGTTTAGGTTTCAGAATTGTTTGC 59.799 38.462 0.00 0.00 0.00 3.68
1919 4801 9.202273 GAAGGCATCAATTTACAAAATGTTACA 57.798 29.630 0.00 0.00 0.00 2.41
2026 4908 3.444034 CCCTGCCTACTCTTTTAAAAGCC 59.556 47.826 20.93 7.15 35.99 4.35
2053 4935 4.471548 TCCCGTTTTCAATCCTAACCAAA 58.528 39.130 0.00 0.00 0.00 3.28
2054 4936 4.076394 CTCCCGTTTTCAATCCTAACCAA 58.924 43.478 0.00 0.00 0.00 3.67
2104 4986 2.948979 ACGTTCAAACTGCATTCCTTCA 59.051 40.909 0.00 0.00 0.00 3.02
2161 5043 2.034305 AGTGTACTCCGCGGACATATTC 59.966 50.000 27.28 15.24 0.00 1.75
2235 5117 2.417933 GAGTGATGTGTGTGCATCTTCC 59.582 50.000 7.45 0.00 44.02 3.46
2287 5169 5.888724 TGTCAACCAACAGGATCTACAAAAA 59.111 36.000 0.00 0.00 0.00 1.94
2349 5231 9.361315 GGAAAAACTTCTTTTACAGCACTAAAA 57.639 29.630 0.00 0.00 0.00 1.52
2379 5261 7.933577 TCTTCGACATCCTCAGCAATTATTAAT 59.066 33.333 0.00 0.00 0.00 1.40
2442 5324 1.019673 CTGCCACTTTGATCATCCCG 58.980 55.000 0.00 0.00 0.00 5.14
2803 5686 5.521010 ACGTACATATAAAACGTCACATGGG 59.479 40.000 0.00 0.00 46.04 4.00
2935 5819 4.630069 CACCCAGTATCTTTTTCTGGTACG 59.370 45.833 9.15 0.00 44.92 3.67
3026 5910 6.872547 GCACAAAAGGCTAGTTACTAGTTAGT 59.127 38.462 19.12 0.00 36.53 2.24
3584 6493 4.440525 GCAATGAAATCGGGATGATGTTGT 60.441 41.667 0.00 0.00 37.39 3.32
3655 6564 7.985634 TTTCTTGTTTCTTTATTGTGCACTC 57.014 32.000 19.41 0.00 0.00 3.51
3665 6574 7.821846 AGTTGTTGCCATTTTCTTGTTTCTTTA 59.178 29.630 0.00 0.00 0.00 1.85
3669 6578 5.580297 TGAGTTGTTGCCATTTTCTTGTTTC 59.420 36.000 0.00 0.00 0.00 2.78
3791 6700 6.288294 ACAACACAATGTAAAGAGCTAGTCA 58.712 36.000 0.00 0.00 0.00 3.41
3854 6763 9.350951 ACTCTGTTTTTATAAGGGCCAATATAC 57.649 33.333 6.18 0.04 0.00 1.47
4037 6946 2.571212 CACAAGCACCTTGACCACTAA 58.429 47.619 11.56 0.00 43.42 2.24
4157 7066 5.003804 TGAAAGGAGTTATGGCTCAAGAAC 58.996 41.667 0.00 0.00 37.24 3.01
4158 7067 5.241403 TGAAAGGAGTTATGGCTCAAGAA 57.759 39.130 0.00 0.00 37.24 2.52
4188 7097 3.263489 AGATGTCAGCACCAATCTGAG 57.737 47.619 0.00 0.00 40.82 3.35
4249 7158 1.148273 GCCACTCATCCCGGCATTA 59.852 57.895 0.00 0.00 45.52 1.90
4315 7224 7.225931 AGACAAACGTGTAACATGTAACTGAAT 59.774 33.333 0.00 0.00 38.41 2.57
4328 7237 4.696402 ACAGTTTTCCAGACAAACGTGTAA 59.304 37.500 0.00 0.00 38.41 2.41
4329 7238 4.093703 CACAGTTTTCCAGACAAACGTGTA 59.906 41.667 0.00 0.00 38.41 2.90
4330 7239 3.078837 ACAGTTTTCCAGACAAACGTGT 58.921 40.909 0.00 0.00 42.10 4.49
4334 7243 5.248870 ACATCACAGTTTTCCAGACAAAC 57.751 39.130 0.00 0.00 34.80 2.93
4344 7253 4.974645 TCCTCAGGTACATCACAGTTTT 57.025 40.909 0.00 0.00 0.00 2.43
4350 7259 6.708054 CCAGAATTTATCCTCAGGTACATCAC 59.292 42.308 0.00 0.00 0.00 3.06
4352 7261 5.703130 GCCAGAATTTATCCTCAGGTACATC 59.297 44.000 0.00 0.00 0.00 3.06
4353 7262 5.370880 AGCCAGAATTTATCCTCAGGTACAT 59.629 40.000 0.00 0.00 0.00 2.29
4355 7264 5.297569 AGCCAGAATTTATCCTCAGGTAC 57.702 43.478 0.00 0.00 0.00 3.34
4360 7269 5.532406 GCATGTTAGCCAGAATTTATCCTCA 59.468 40.000 0.00 0.00 0.00 3.86
4466 7375 4.518211 GTCCAATATTCCAGAAGCCATCAG 59.482 45.833 0.00 0.00 0.00 2.90
4511 7420 7.444183 GGATTATTCTAACCATCGTTCCATGAA 59.556 37.037 0.00 0.00 33.17 2.57
4513 7422 6.936900 AGGATTATTCTAACCATCGTTCCATG 59.063 38.462 0.00 0.00 33.17 3.66
4520 7429 8.744652 AGAGACATAGGATTATTCTAACCATCG 58.255 37.037 0.00 0.00 0.00 3.84
4548 7457 7.599630 TCGACGTTACTAATTGGCTTATTTT 57.400 32.000 0.00 0.00 0.00 1.82
4551 7460 6.202188 CCATTCGACGTTACTAATTGGCTTAT 59.798 38.462 0.00 0.00 0.00 1.73
4555 7464 3.545426 GCCATTCGACGTTACTAATTGGC 60.545 47.826 8.35 8.35 0.00 4.52
4563 7472 2.268298 AGTGATGCCATTCGACGTTAC 58.732 47.619 0.00 0.00 0.00 2.50
4569 7478 3.785486 CAGAGTTAGTGATGCCATTCGA 58.215 45.455 0.00 0.00 0.00 3.71
4570 7479 2.286294 GCAGAGTTAGTGATGCCATTCG 59.714 50.000 0.00 0.00 32.49 3.34
4680 7589 1.807226 CGCCTCCACGATCACTACA 59.193 57.895 0.00 0.00 34.06 2.74
4731 7640 0.694444 TCAGGTTCCTAGGGGGCATC 60.694 60.000 9.46 0.00 34.39 3.91
4821 7736 6.934210 AGCACGATATTGAAAAGAACGATAC 58.066 36.000 0.00 0.00 0.00 2.24
4952 7887 4.313277 TCTTCCAGCTCATATCTTGACG 57.687 45.455 0.00 0.00 0.00 4.35
5012 7966 2.685380 ACCCTCGCTCCCCTCTTG 60.685 66.667 0.00 0.00 0.00 3.02
5013 7967 2.364448 GACCCTCGCTCCCCTCTT 60.364 66.667 0.00 0.00 0.00 2.85
5077 8041 0.449388 CGCTCTGGTTGGCATCTTTC 59.551 55.000 0.00 0.00 0.00 2.62
5134 8099 1.227999 TTGAACCGCAGCTGTAGTGC 61.228 55.000 16.64 12.12 37.58 4.40
5251 8223 7.573968 AATTAATTATCTGTGTTCCTGCCTC 57.426 36.000 0.00 0.00 0.00 4.70
5314 8294 4.574828 ACGTGCAAAGATACCATATCCAAC 59.425 41.667 0.00 0.00 0.00 3.77
5430 8416 5.626531 GAGTATCAGCTGCACATGTGTGTT 61.627 45.833 26.01 14.63 41.02 3.32
5516 8518 2.329379 GACATGACTGACCTCAACGTC 58.671 52.381 0.00 0.00 0.00 4.34
5750 8752 2.683933 AAGGCGTGGACGGATCCT 60.684 61.111 10.75 0.00 46.43 3.24
5764 8766 0.179089 CATCGGGAGAGACAGCAAGG 60.179 60.000 0.00 0.00 45.48 3.61
5792 8794 0.375803 ACTTCAACGTGCGGTTTGTC 59.624 50.000 0.00 0.00 36.49 3.18
5868 8870 4.612412 GGTGCCGTTCGTCCCACA 62.612 66.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.