Multiple sequence alignment - TraesCS2D01G309800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G309800 chr2D 100.000 3252 0 0 1 3252 398088423 398085172 0.000000e+00 6006.0
1 TraesCS2D01G309800 chr2A 94.163 2347 67 23 379 2686 535242849 535240534 0.000000e+00 3511.0
2 TraesCS2D01G309800 chr2A 90.000 430 34 6 2828 3249 535178449 535178021 6.130000e-152 547.0
3 TraesCS2D01G309800 chr2A 79.345 397 48 20 1 391 535246655 535246287 6.970000e-62 248.0
4 TraesCS2D01G309800 chr2B 92.870 2160 92 30 310 2452 470473198 470471084 0.000000e+00 3079.0
5 TraesCS2D01G309800 chr2B 90.541 296 25 3 2956 3249 470416455 470416161 3.930000e-104 388.0
6 TraesCS2D01G309800 chr2B 88.256 281 21 3 2678 2958 470466619 470466351 3.130000e-85 326.0
7 TraesCS2D01G309800 chr2B 94.545 165 6 2 2520 2682 470468866 470468703 5.390000e-63 252.0
8 TraesCS2D01G309800 chr2B 97.500 80 1 1 2444 2522 470470809 470470730 5.660000e-28 135.0
9 TraesCS2D01G309800 chr2B 94.872 39 1 1 3148 3185 517386753 517386791 3.500000e-05 60.2
10 TraesCS2D01G309800 chr4A 75.882 510 90 28 1028 1522 691323886 691324377 2.520000e-56 230.0
11 TraesCS2D01G309800 chr4A 78.761 226 43 4 1303 1524 173630704 173630928 2.610000e-31 147.0
12 TraesCS2D01G309800 chr7D 81.323 257 42 4 1272 1522 33754878 33755134 1.530000e-48 204.0
13 TraesCS2D01G309800 chr7D 80.916 262 44 5 1270 1525 34011512 34011251 5.500000e-48 202.0
14 TraesCS2D01G309800 chr7D 80.545 257 48 2 1270 1525 34151410 34151155 2.560000e-46 196.0
15 TraesCS2D01G309800 chr7D 80.851 235 39 3 1298 1526 420742646 420742412 2.580000e-41 180.0
16 TraesCS2D01G309800 chr7D 83.333 108 16 2 3038 3144 384054360 384054254 7.430000e-17 99.0
17 TraesCS2D01G309800 chr7D 86.207 58 8 0 3038 3095 454164859 454164916 2.710000e-06 63.9
18 TraesCS2D01G309800 chr7A 80.916 262 44 3 1270 1525 34519327 34519066 5.500000e-48 202.0
19 TraesCS2D01G309800 chr7A 80.769 234 39 4 1299 1526 512328957 512329190 9.270000e-41 178.0
20 TraesCS2D01G309800 chr6D 82.143 224 38 2 1301 1523 310888064 310887842 1.190000e-44 191.0
21 TraesCS2D01G309800 chr6D 74.828 290 58 14 2955 3238 157159565 157159845 2.050000e-22 117.0
22 TraesCS2D01G309800 chr6D 79.213 178 24 11 3070 3243 434606253 434606421 9.540000e-21 111.0
23 TraesCS2D01G309800 chr7B 79.468 263 48 4 1270 1526 436787617 436787355 7.170000e-42 182.0
24 TraesCS2D01G309800 chr6A 81.166 223 42 0 1301 1523 447178891 447178669 2.580000e-41 180.0
25 TraesCS2D01G309800 chr3D 75.635 197 36 10 3020 3209 433429005 433429196 1.610000e-13 87.9
26 TraesCS2D01G309800 chr3D 93.023 43 2 1 3057 3098 545249218 545249176 9.740000e-06 62.1
27 TraesCS2D01G309800 chr3D 79.121 91 16 2 3070 3158 545249172 545249083 3.500000e-05 60.2
28 TraesCS2D01G309800 chr5B 92.500 40 3 0 3204 3243 473785549 473785588 1.260000e-04 58.4
29 TraesCS2D01G309800 chr1B 94.286 35 2 0 3148 3182 415737409 415737443 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G309800 chr2D 398085172 398088423 3251 True 6006.0 6006 100.00000 1 3252 1 chr2D.!!$R1 3251
1 TraesCS2D01G309800 chr2A 535240534 535246655 6121 True 1879.5 3511 86.75400 1 2686 2 chr2A.!!$R2 2685
2 TraesCS2D01G309800 chr2B 470466351 470473198 6847 True 948.0 3079 93.29275 310 2958 4 chr2B.!!$R2 2648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 4104 0.031716 AGTGGATAGCAGCTCTCCCA 60.032 55.0 21.27 13.77 0.0 4.37 F
1672 5164 0.039527 GGGTTGATGGTGTTTCGTGC 60.040 55.0 0.00 0.00 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 5171 0.179001 CATCCATCCTCCTGCATGCA 60.179 55.0 21.29 21.29 0.0 3.96 R
2820 10567 0.033796 TACTCCCTCCGTTCCGACAT 60.034 55.0 0.00 0.00 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 64 0.321653 CCAGGCAGGCTTCGTTTACT 60.322 55.000 0.00 0.00 0.00 2.24
59 65 0.798776 CAGGCAGGCTTCGTTTACTG 59.201 55.000 0.00 0.00 0.00 2.74
63 69 2.353406 GGCAGGCTTCGTTTACTGTAGA 60.353 50.000 0.00 0.00 33.62 2.59
65 71 3.123116 GCAGGCTTCGTTTACTGTAGAAC 59.877 47.826 0.00 0.00 33.62 3.01
67 73 4.386049 CAGGCTTCGTTTACTGTAGAACTG 59.614 45.833 0.00 0.00 0.00 3.16
130 136 3.426568 GCCTGTCTTCGCCACTGC 61.427 66.667 0.00 0.00 0.00 4.40
133 139 1.739562 CTGTCTTCGCCACTGCTCC 60.740 63.158 0.00 0.00 34.43 4.70
145 157 0.326264 ACTGCTCCCGCTTGAAATCT 59.674 50.000 0.00 0.00 36.97 2.40
146 158 0.731417 CTGCTCCCGCTTGAAATCTG 59.269 55.000 0.00 0.00 36.97 2.90
156 168 3.581755 GCTTGAAATCTGCATTGAAGCA 58.418 40.909 15.10 0.00 43.35 3.91
158 170 4.032900 GCTTGAAATCTGCATTGAAGCATG 59.967 41.667 15.10 0.00 44.68 4.06
159 171 4.794278 TGAAATCTGCATTGAAGCATGT 57.206 36.364 0.00 0.00 44.68 3.21
160 172 4.490743 TGAAATCTGCATTGAAGCATGTG 58.509 39.130 0.00 0.00 44.68 3.21
161 173 3.520290 AATCTGCATTGAAGCATGTGG 57.480 42.857 0.00 0.00 44.68 4.17
162 174 2.203470 TCTGCATTGAAGCATGTGGA 57.797 45.000 0.00 0.00 44.68 4.02
163 175 2.730382 TCTGCATTGAAGCATGTGGAT 58.270 42.857 0.00 0.00 44.68 3.41
164 176 3.093814 TCTGCATTGAAGCATGTGGATT 58.906 40.909 0.00 0.00 44.68 3.01
165 177 4.271661 TCTGCATTGAAGCATGTGGATTA 58.728 39.130 0.00 0.00 44.68 1.75
166 178 4.337274 TCTGCATTGAAGCATGTGGATTAG 59.663 41.667 0.00 0.00 44.68 1.73
167 179 4.018490 TGCATTGAAGCATGTGGATTAGT 58.982 39.130 0.00 0.00 40.11 2.24
168 180 4.463539 TGCATTGAAGCATGTGGATTAGTT 59.536 37.500 0.00 0.00 40.11 2.24
169 181 5.651576 TGCATTGAAGCATGTGGATTAGTTA 59.348 36.000 0.00 0.00 40.11 2.24
170 182 5.973565 GCATTGAAGCATGTGGATTAGTTAC 59.026 40.000 0.00 0.00 0.00 2.50
171 183 6.404623 GCATTGAAGCATGTGGATTAGTTACA 60.405 38.462 0.00 0.00 0.00 2.41
172 184 7.537715 CATTGAAGCATGTGGATTAGTTACAA 58.462 34.615 0.00 0.00 0.00 2.41
173 185 6.494893 TGAAGCATGTGGATTAGTTACAAC 57.505 37.500 0.00 0.00 0.00 3.32
174 186 6.237901 TGAAGCATGTGGATTAGTTACAACT 58.762 36.000 0.00 0.00 42.91 3.16
175 187 6.714810 TGAAGCATGTGGATTAGTTACAACTT 59.285 34.615 0.00 0.00 40.37 2.66
176 188 6.743575 AGCATGTGGATTAGTTACAACTTC 57.256 37.500 0.00 0.00 40.37 3.01
177 189 6.476378 AGCATGTGGATTAGTTACAACTTCT 58.524 36.000 0.00 0.00 40.37 2.85
178 190 6.942576 AGCATGTGGATTAGTTACAACTTCTT 59.057 34.615 0.00 0.00 40.37 2.52
179 191 7.023575 GCATGTGGATTAGTTACAACTTCTTG 58.976 38.462 0.00 0.00 40.37 3.02
180 192 7.308589 GCATGTGGATTAGTTACAACTTCTTGT 60.309 37.037 0.00 0.00 43.39 3.16
181 193 8.567948 CATGTGGATTAGTTACAACTTCTTGTT 58.432 33.333 0.00 0.00 41.15 2.83
191 203 2.024176 ACTTCTTGTTGCGTCAGTGT 57.976 45.000 0.00 0.00 0.00 3.55
192 204 1.665679 ACTTCTTGTTGCGTCAGTGTG 59.334 47.619 0.00 0.00 0.00 3.82
200 212 1.013596 TGCGTCAGTGTGAGGTTTTG 58.986 50.000 0.00 0.00 34.95 2.44
234 246 9.573133 TTTCTGTTCTCTCTTGTTTTGAAATTC 57.427 29.630 0.00 0.00 0.00 2.17
262 274 8.729805 TTTCAAAAATAATTCAGCCACAACTT 57.270 26.923 0.00 0.00 0.00 2.66
293 305 3.475566 TTCAGTGAGCTACAGTTTGCT 57.524 42.857 0.00 0.92 42.82 3.91
294 306 3.475566 TCAGTGAGCTACAGTTTGCTT 57.524 42.857 0.00 0.00 39.91 3.91
298 310 3.248602 AGTGAGCTACAGTTTGCTTTTCG 59.751 43.478 0.00 0.00 39.91 3.46
299 311 2.032030 TGAGCTACAGTTTGCTTTTCGC 60.032 45.455 0.00 0.00 39.91 4.70
333 345 8.356657 ACCGAAATGTTCACTTGAAATTCAATA 58.643 29.630 9.02 0.00 35.59 1.90
396 408 9.434559 GTTTGAACTCTTGTGTATTACTGAAAC 57.565 33.333 0.00 0.00 0.00 2.78
397 409 8.725405 TTGAACTCTTGTGTATTACTGAAACA 57.275 30.769 0.00 0.00 0.00 2.83
398 410 8.365399 TGAACTCTTGTGTATTACTGAAACAG 57.635 34.615 0.00 0.00 37.52 3.16
400 412 6.827727 ACTCTTGTGTATTACTGAAACAGGT 58.172 36.000 0.00 0.00 35.51 4.00
405 417 8.458573 TTGTGTATTACTGAAACAGGTGAAAT 57.541 30.769 0.00 0.00 35.51 2.17
406 418 9.562408 TTGTGTATTACTGAAACAGGTGAAATA 57.438 29.630 0.00 0.00 35.51 1.40
412 424 8.740123 TTACTGAAACAGGTGAAATACTTTGA 57.260 30.769 0.00 0.00 35.51 2.69
485 3950 9.767228 AATTCAGTGAATTTCATTGACATTTCA 57.233 25.926 22.70 8.57 41.77 2.69
486 3951 8.578308 TTCAGTGAATTTCATTGACATTTCAC 57.422 30.769 20.35 18.71 41.77 3.18
487 3952 7.944061 TCAGTGAATTTCATTGACATTTCACT 58.056 30.769 17.65 21.16 38.05 3.41
488 3953 9.065798 TCAGTGAATTTCATTGACATTTCACTA 57.934 29.630 23.79 15.69 38.05 2.74
489 3954 9.681692 CAGTGAATTTCATTGACATTTCACTAA 57.318 29.630 23.79 2.36 36.36 2.24
514 3979 3.128068 ACTGAACCGAAAGTGAAAACCAC 59.872 43.478 0.00 0.00 46.03 4.16
515 3980 2.424246 TGAACCGAAAGTGAAAACCACC 59.576 45.455 0.00 0.00 46.87 4.61
523 3988 0.388659 GTGAAAACCACCTGCATGCA 59.611 50.000 21.29 21.29 39.86 3.96
609 4076 7.038302 AGTGTGGAACTGTGGATCTAAGATTAA 60.038 37.037 0.00 0.00 37.88 1.40
610 4077 7.606456 GTGTGGAACTGTGGATCTAAGATTAAA 59.394 37.037 0.00 0.00 38.04 1.52
637 4104 0.031716 AGTGGATAGCAGCTCTCCCA 60.032 55.000 21.27 13.77 0.00 4.37
847 4319 0.321996 GTGTCAACTCTCACCCTCCC 59.678 60.000 0.00 0.00 0.00 4.30
901 4373 4.064768 CCTGCCCTGGCCATGGAA 62.065 66.667 29.46 19.36 41.09 3.53
947 4419 1.153745 CCTCTCCCGCGTCAAAGAG 60.154 63.158 4.92 10.92 35.97 2.85
994 4466 2.916089 CAAATTTTGCGTGCATCGATCA 59.084 40.909 11.94 0.00 42.86 2.92
1252 4732 4.320057 GCTATTGCCTATTGCTGACATGAC 60.320 45.833 0.00 0.00 42.00 3.06
1256 4736 3.208594 GCCTATTGCTGACATGACATGA 58.791 45.455 22.19 0.00 36.87 3.07
1257 4737 3.819337 GCCTATTGCTGACATGACATGAT 59.181 43.478 22.19 6.35 36.87 2.45
1258 4738 4.999311 GCCTATTGCTGACATGACATGATA 59.001 41.667 22.19 8.98 36.87 2.15
1266 4750 7.477494 TGCTGACATGACATGATAATTTCTTG 58.523 34.615 22.19 6.57 35.99 3.02
1399 4883 1.598685 GTTTTGGAAGGCGACGGGA 60.599 57.895 0.00 0.00 0.00 5.14
1468 4952 2.758089 GCTCGTCTTCTACCGCGGA 61.758 63.158 35.90 14.96 0.00 5.54
1576 5060 3.107402 AGCCCTCAGTGATCTGTCTTA 57.893 47.619 0.00 0.00 41.91 2.10
1594 5078 4.633126 GTCTTAAAATCCCTTCCCGTGTAC 59.367 45.833 0.00 0.00 0.00 2.90
1606 5093 4.019792 TCCCGTGTACTAGAACTGTGTA 57.980 45.455 0.00 0.00 0.00 2.90
1672 5164 0.039527 GGGTTGATGGTGTTTCGTGC 60.040 55.000 0.00 0.00 0.00 5.34
1679 5171 0.179032 TGGTGTTTCGTGCTGATGGT 60.179 50.000 0.00 0.00 0.00 3.55
1744 5236 3.795561 AAGTGTTTCTTCAAGATCGCG 57.204 42.857 0.00 0.00 0.00 5.87
1969 5461 2.665000 CACGTGCAGGTCCAGGAT 59.335 61.111 9.53 0.00 0.00 3.24
2026 5518 1.557443 GCGGCGGGTATGATTTCTCG 61.557 60.000 9.78 0.00 0.00 4.04
2584 8237 3.455685 GCAGCATTTGTTCTGCGC 58.544 55.556 0.00 0.00 44.94 6.09
2615 8268 3.755812 GCCCTCTCCTAGCCTGTAGTTAT 60.756 52.174 0.00 0.00 0.00 1.89
2646 8299 9.744468 GTTGTTGTATTTAACTTCCATTCAGTT 57.256 29.630 0.00 0.00 38.13 3.16
2716 10463 0.736053 GTGGCTAGGTCTCAGTCGAG 59.264 60.000 0.00 0.00 40.98 4.04
2718 10465 0.736053 GGCTAGGTCTCAGTCGAGTG 59.264 60.000 14.33 14.33 40.44 3.51
2719 10466 0.099791 GCTAGGTCTCAGTCGAGTGC 59.900 60.000 15.66 1.60 40.44 4.40
2721 10468 1.813178 CTAGGTCTCAGTCGAGTGCAA 59.187 52.381 15.66 2.91 40.44 4.08
2722 10469 1.040646 AGGTCTCAGTCGAGTGCAAA 58.959 50.000 15.66 0.35 40.44 3.68
2723 10470 1.412710 AGGTCTCAGTCGAGTGCAAAA 59.587 47.619 15.66 0.00 40.44 2.44
2724 10471 2.158957 AGGTCTCAGTCGAGTGCAAAAA 60.159 45.455 15.66 0.00 40.44 1.94
2766 10513 5.468409 TCAAGTGACATAACATGCGAGAAAA 59.532 36.000 0.00 0.00 0.00 2.29
2796 10543 8.716674 AACTAAATGATCCCATGAATATTGCT 57.283 30.769 0.00 0.00 32.36 3.91
2820 10567 8.610896 GCTTCGACTAAGACATAGTTAAGTCTA 58.389 37.037 11.99 0.00 45.00 2.59
2849 10596 2.032620 CGGAGGGAGTAGTGTATGCTT 58.967 52.381 0.00 0.00 0.00 3.91
2864 10611 8.608844 AGTGTATGCTTGCTAAAAGGATATAC 57.391 34.615 14.37 14.37 40.39 1.47
2873 10620 7.241042 TGCTAAAAGGATATACGGAGCTAAT 57.759 36.000 0.00 0.00 0.00 1.73
2895 10642 9.971922 CTAATTAATGAGGCCAAAATTAAGGAG 57.028 33.333 5.01 9.24 31.30 3.69
2958 10705 2.167662 GTCCATCCCCGTGACATTTTT 58.832 47.619 0.00 0.00 0.00 1.94
2976 10723 4.959596 TTTTTAACACAGTACAACCGCA 57.040 36.364 0.00 0.00 0.00 5.69
2977 10724 4.959596 TTTTAACACAGTACAACCGCAA 57.040 36.364 0.00 0.00 0.00 4.85
2978 10725 4.959596 TTTAACACAGTACAACCGCAAA 57.040 36.364 0.00 0.00 0.00 3.68
2979 10726 5.502153 TTTAACACAGTACAACCGCAAAT 57.498 34.783 0.00 0.00 0.00 2.32
2980 10727 6.615264 TTTAACACAGTACAACCGCAAATA 57.385 33.333 0.00 0.00 0.00 1.40
2981 10728 6.804770 TTAACACAGTACAACCGCAAATAT 57.195 33.333 0.00 0.00 0.00 1.28
2982 10729 5.699097 AACACAGTACAACCGCAAATATT 57.301 34.783 0.00 0.00 0.00 1.28
2983 10730 5.291293 ACACAGTACAACCGCAAATATTC 57.709 39.130 0.00 0.00 0.00 1.75
2984 10731 4.757657 ACACAGTACAACCGCAAATATTCA 59.242 37.500 0.00 0.00 0.00 2.57
2985 10732 5.414454 ACACAGTACAACCGCAAATATTCAT 59.586 36.000 0.00 0.00 0.00 2.57
2986 10733 6.596106 ACACAGTACAACCGCAAATATTCATA 59.404 34.615 0.00 0.00 0.00 2.15
2987 10734 7.282224 ACACAGTACAACCGCAAATATTCATAT 59.718 33.333 0.00 0.00 0.00 1.78
2988 10735 8.769891 CACAGTACAACCGCAAATATTCATATA 58.230 33.333 0.00 0.00 0.00 0.86
2989 10736 8.770828 ACAGTACAACCGCAAATATTCATATAC 58.229 33.333 0.00 0.00 0.00 1.47
2990 10737 8.769891 CAGTACAACCGCAAATATTCATATACA 58.230 33.333 0.00 0.00 0.00 2.29
2991 10738 8.770828 AGTACAACCGCAAATATTCATATACAC 58.229 33.333 0.00 0.00 0.00 2.90
2992 10739 6.655062 ACAACCGCAAATATTCATATACACG 58.345 36.000 0.00 0.00 0.00 4.49
2993 10740 6.259167 ACAACCGCAAATATTCATATACACGT 59.741 34.615 0.00 0.00 0.00 4.49
2994 10741 7.438757 ACAACCGCAAATATTCATATACACGTA 59.561 33.333 0.00 0.00 0.00 3.57
2995 10742 7.342318 ACCGCAAATATTCATATACACGTAC 57.658 36.000 0.00 0.00 0.00 3.67
2996 10743 6.924612 ACCGCAAATATTCATATACACGTACA 59.075 34.615 0.00 0.00 0.00 2.90
2997 10744 7.601130 ACCGCAAATATTCATATACACGTACAT 59.399 33.333 0.00 0.00 0.00 2.29
2998 10745 7.897800 CCGCAAATATTCATATACACGTACATG 59.102 37.037 0.00 0.00 0.00 3.21
2999 10746 8.432359 CGCAAATATTCATATACACGTACATGT 58.568 33.333 2.69 2.69 36.56 3.21
3006 10753 6.962686 TCATATACACGTACATGTACTCACC 58.037 40.000 28.53 7.31 37.88 4.02
3007 10754 4.644103 ATACACGTACATGTACTCACCC 57.356 45.455 28.53 6.64 37.88 4.61
3008 10755 1.200716 ACACGTACATGTACTCACCCG 59.799 52.381 28.53 18.81 34.04 5.28
3009 10756 1.469703 CACGTACATGTACTCACCCGA 59.530 52.381 28.53 0.00 34.04 5.14
3010 10757 2.098607 CACGTACATGTACTCACCCGAT 59.901 50.000 28.53 7.29 34.04 4.18
3011 10758 2.098607 ACGTACATGTACTCACCCGATG 59.901 50.000 28.53 14.94 34.04 3.84
3012 10759 2.356695 CGTACATGTACTCACCCGATGA 59.643 50.000 28.53 0.00 34.04 2.92
3013 10760 3.181494 CGTACATGTACTCACCCGATGAA 60.181 47.826 28.53 0.00 36.69 2.57
3014 10761 4.499188 CGTACATGTACTCACCCGATGAAT 60.499 45.833 28.53 0.00 36.69 2.57
3015 10762 3.797039 ACATGTACTCACCCGATGAATG 58.203 45.455 0.00 0.00 36.69 2.67
3016 10763 2.309528 TGTACTCACCCGATGAATGC 57.690 50.000 0.00 0.00 36.69 3.56
3017 10764 1.552792 TGTACTCACCCGATGAATGCA 59.447 47.619 0.00 0.00 36.69 3.96
3018 10765 2.170397 TGTACTCACCCGATGAATGCAT 59.830 45.455 0.00 0.00 36.69 3.96
3019 10766 1.959042 ACTCACCCGATGAATGCATC 58.041 50.000 3.23 3.23 45.94 3.91
3032 10779 3.486263 GCATCACGCACACCCTAC 58.514 61.111 0.00 0.00 41.79 3.18
3033 10780 1.375396 GCATCACGCACACCCTACA 60.375 57.895 0.00 0.00 41.79 2.74
3034 10781 0.744414 GCATCACGCACACCCTACAT 60.744 55.000 0.00 0.00 41.79 2.29
3035 10782 1.737838 CATCACGCACACCCTACATT 58.262 50.000 0.00 0.00 0.00 2.71
3036 10783 2.083774 CATCACGCACACCCTACATTT 58.916 47.619 0.00 0.00 0.00 2.32
3037 10784 2.264005 TCACGCACACCCTACATTTT 57.736 45.000 0.00 0.00 0.00 1.82
3038 10785 1.876799 TCACGCACACCCTACATTTTG 59.123 47.619 0.00 0.00 0.00 2.44
3039 10786 1.876799 CACGCACACCCTACATTTTGA 59.123 47.619 0.00 0.00 0.00 2.69
3040 10787 2.095768 CACGCACACCCTACATTTTGAG 60.096 50.000 0.00 0.00 0.00 3.02
3041 10788 1.135689 CGCACACCCTACATTTTGAGC 60.136 52.381 0.00 0.00 0.00 4.26
3042 10789 1.885887 GCACACCCTACATTTTGAGCA 59.114 47.619 0.00 0.00 0.00 4.26
3043 10790 2.351738 GCACACCCTACATTTTGAGCAC 60.352 50.000 0.00 0.00 0.00 4.40
3044 10791 2.228822 CACACCCTACATTTTGAGCACC 59.771 50.000 0.00 0.00 0.00 5.01
3045 10792 2.108250 ACACCCTACATTTTGAGCACCT 59.892 45.455 0.00 0.00 0.00 4.00
3046 10793 2.749621 CACCCTACATTTTGAGCACCTC 59.250 50.000 0.00 0.00 0.00 3.85
3047 10794 2.290960 ACCCTACATTTTGAGCACCTCC 60.291 50.000 0.00 0.00 0.00 4.30
3048 10795 2.009774 CCTACATTTTGAGCACCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
3049 10796 2.009774 CTACATTTTGAGCACCTCCGG 58.990 52.381 0.00 0.00 0.00 5.14
3050 10797 0.609131 ACATTTTGAGCACCTCCGGG 60.609 55.000 0.00 0.00 38.88 5.73
3051 10798 0.322456 CATTTTGAGCACCTCCGGGA 60.322 55.000 0.00 0.00 36.25 5.14
3052 10799 0.625849 ATTTTGAGCACCTCCGGGAT 59.374 50.000 0.00 0.00 36.25 3.85
3053 10800 1.281419 TTTTGAGCACCTCCGGGATA 58.719 50.000 0.00 0.00 36.25 2.59
3054 10801 0.539986 TTTGAGCACCTCCGGGATAC 59.460 55.000 0.00 0.00 36.25 2.24
3055 10802 0.616395 TTGAGCACCTCCGGGATACA 60.616 55.000 0.00 0.00 39.74 2.29
3056 10803 1.043116 TGAGCACCTCCGGGATACAG 61.043 60.000 0.00 0.00 39.74 2.74
3057 10804 0.755698 GAGCACCTCCGGGATACAGA 60.756 60.000 0.00 0.00 39.74 3.41
3058 10805 0.757188 AGCACCTCCGGGATACAGAG 60.757 60.000 0.00 0.00 38.04 3.35
3059 10806 1.742768 CACCTCCGGGATACAGAGC 59.257 63.158 0.00 0.00 37.23 4.09
3060 10807 1.457831 ACCTCCGGGATACAGAGCC 60.458 63.158 0.00 0.00 37.23 4.70
3061 10808 1.457643 CCTCCGGGATACAGAGCCA 60.458 63.158 0.00 0.00 37.23 4.75
3062 10809 1.048724 CCTCCGGGATACAGAGCCAA 61.049 60.000 0.00 0.00 37.23 4.52
3063 10810 0.105039 CTCCGGGATACAGAGCCAAC 59.895 60.000 0.00 0.00 39.74 3.77
3064 10811 0.616395 TCCGGGATACAGAGCCAACA 60.616 55.000 0.00 0.00 39.74 3.33
3065 10812 0.462047 CCGGGATACAGAGCCAACAC 60.462 60.000 0.00 0.00 39.74 3.32
3066 10813 0.249120 CGGGATACAGAGCCAACACA 59.751 55.000 0.00 0.00 39.74 3.72
3067 10814 1.338674 CGGGATACAGAGCCAACACAA 60.339 52.381 0.00 0.00 39.74 3.33
3068 10815 2.680805 CGGGATACAGAGCCAACACAAT 60.681 50.000 0.00 0.00 39.74 2.71
3069 10816 3.431626 CGGGATACAGAGCCAACACAATA 60.432 47.826 0.00 0.00 39.74 1.90
3070 10817 4.718961 GGGATACAGAGCCAACACAATAT 58.281 43.478 0.00 0.00 39.74 1.28
3071 10818 4.757149 GGGATACAGAGCCAACACAATATC 59.243 45.833 0.00 0.00 39.74 1.63
3072 10819 5.455326 GGGATACAGAGCCAACACAATATCT 60.455 44.000 0.00 0.00 39.74 1.98
3073 10820 6.058183 GGATACAGAGCCAACACAATATCTT 58.942 40.000 0.00 0.00 0.00 2.40
3074 10821 6.017605 GGATACAGAGCCAACACAATATCTTG 60.018 42.308 0.00 0.00 38.39 3.02
3075 10822 4.910195 ACAGAGCCAACACAATATCTTGA 58.090 39.130 0.00 0.00 36.20 3.02
3076 10823 4.940046 ACAGAGCCAACACAATATCTTGAG 59.060 41.667 0.00 0.00 36.20 3.02
3077 10824 5.181009 CAGAGCCAACACAATATCTTGAGA 58.819 41.667 0.00 0.00 36.20 3.27
3078 10825 5.821470 CAGAGCCAACACAATATCTTGAGAT 59.179 40.000 0.00 0.00 36.20 2.75
3079 10826 6.318144 CAGAGCCAACACAATATCTTGAGATT 59.682 38.462 0.00 0.00 36.20 2.40
3080 10827 6.318144 AGAGCCAACACAATATCTTGAGATTG 59.682 38.462 14.16 14.16 38.70 2.67
3081 10828 6.182627 AGCCAACACAATATCTTGAGATTGA 58.817 36.000 20.38 0.00 36.69 2.57
3082 10829 6.832384 AGCCAACACAATATCTTGAGATTGAT 59.168 34.615 20.38 8.59 36.69 2.57
3083 10830 6.916387 GCCAACACAATATCTTGAGATTGATG 59.084 38.462 20.38 16.42 36.69 3.07
3084 10831 7.201758 GCCAACACAATATCTTGAGATTGATGA 60.202 37.037 20.38 0.00 36.69 2.92
3085 10832 8.680001 CCAACACAATATCTTGAGATTGATGAA 58.320 33.333 20.38 0.00 36.69 2.57
3086 10833 9.717892 CAACACAATATCTTGAGATTGATGAAG 57.282 33.333 20.38 9.65 36.69 3.02
3087 10834 9.458727 AACACAATATCTTGAGATTGATGAAGT 57.541 29.630 20.38 10.10 36.69 3.01
3088 10835 9.107177 ACACAATATCTTGAGATTGATGAAGTC 57.893 33.333 20.38 0.00 36.69 3.01
3089 10836 9.106070 CACAATATCTTGAGATTGATGAAGTCA 57.894 33.333 20.38 0.00 36.69 3.41
3090 10837 9.848710 ACAATATCTTGAGATTGATGAAGTCAT 57.151 29.630 20.38 0.00 36.69 3.06
3101 10848 3.996921 ATGAAGTCATCACAAGCTCCT 57.003 42.857 0.00 0.00 41.93 3.69
3102 10849 3.325293 TGAAGTCATCACAAGCTCCTC 57.675 47.619 0.00 0.00 31.50 3.71
3103 10850 2.634453 TGAAGTCATCACAAGCTCCTCA 59.366 45.455 0.00 0.00 31.50 3.86
3104 10851 3.071457 TGAAGTCATCACAAGCTCCTCAA 59.929 43.478 0.00 0.00 31.50 3.02
3105 10852 3.777106 AGTCATCACAAGCTCCTCAAA 57.223 42.857 0.00 0.00 0.00 2.69
3106 10853 3.672808 AGTCATCACAAGCTCCTCAAAG 58.327 45.455 0.00 0.00 0.00 2.77
3107 10854 3.072184 AGTCATCACAAGCTCCTCAAAGT 59.928 43.478 0.00 0.00 0.00 2.66
3108 10855 3.434984 GTCATCACAAGCTCCTCAAAGTC 59.565 47.826 0.00 0.00 0.00 3.01
3109 10856 2.154854 TCACAAGCTCCTCAAAGTCG 57.845 50.000 0.00 0.00 0.00 4.18
3110 10857 1.686587 TCACAAGCTCCTCAAAGTCGA 59.313 47.619 0.00 0.00 0.00 4.20
3111 10858 2.064762 CACAAGCTCCTCAAAGTCGAG 58.935 52.381 0.00 0.00 0.00 4.04
3118 10865 3.123674 CTCAAAGTCGAGGGGAACG 57.876 57.895 0.00 0.00 0.00 3.95
3119 10866 0.317479 CTCAAAGTCGAGGGGAACGT 59.683 55.000 0.00 0.00 0.00 3.99
3120 10867 0.316204 TCAAAGTCGAGGGGAACGTC 59.684 55.000 0.00 0.00 41.76 4.34
3121 10868 0.317479 CAAAGTCGAGGGGAACGTCT 59.683 55.000 0.00 0.00 42.98 4.18
3122 10869 0.602060 AAAGTCGAGGGGAACGTCTC 59.398 55.000 0.00 0.00 42.98 3.36
3123 10870 1.249469 AAGTCGAGGGGAACGTCTCC 61.249 60.000 7.90 7.90 42.98 3.71
3125 10872 1.378250 TCGAGGGGAACGTCTCCTC 60.378 63.158 18.66 18.66 46.81 3.71
3126 10873 3.618652 GAGGGGAACGTCTCCTCC 58.381 66.667 18.13 14.88 46.81 4.30
3127 10874 1.305046 GAGGGGAACGTCTCCTCCA 60.305 63.158 18.13 0.00 46.81 3.86
3128 10875 0.903454 GAGGGGAACGTCTCCTCCAA 60.903 60.000 18.13 0.00 46.81 3.53
3129 10876 1.192803 AGGGGAACGTCTCCTCCAAC 61.193 60.000 11.57 2.46 46.81 3.77
3130 10877 1.192803 GGGGAACGTCTCCTCCAACT 61.193 60.000 13.94 0.00 44.68 3.16
3131 10878 0.037232 GGGAACGTCTCCTCCAACTG 60.037 60.000 13.94 0.00 44.68 3.16
3132 10879 0.966920 GGAACGTCTCCTCCAACTGA 59.033 55.000 8.87 0.00 41.61 3.41
3133 10880 1.343465 GGAACGTCTCCTCCAACTGAA 59.657 52.381 8.87 0.00 41.61 3.02
3134 10881 2.405172 GAACGTCTCCTCCAACTGAAC 58.595 52.381 0.00 0.00 0.00 3.18
3135 10882 0.314302 ACGTCTCCTCCAACTGAACG 59.686 55.000 0.00 0.00 0.00 3.95
3136 10883 0.596577 CGTCTCCTCCAACTGAACGA 59.403 55.000 0.00 0.00 0.00 3.85
3137 10884 1.000607 CGTCTCCTCCAACTGAACGAA 60.001 52.381 0.00 0.00 0.00 3.85
3138 10885 2.405172 GTCTCCTCCAACTGAACGAAC 58.595 52.381 0.00 0.00 0.00 3.95
3139 10886 2.036387 TCTCCTCCAACTGAACGAACA 58.964 47.619 0.00 0.00 0.00 3.18
3140 10887 2.632996 TCTCCTCCAACTGAACGAACAT 59.367 45.455 0.00 0.00 0.00 2.71
3141 10888 3.071023 TCTCCTCCAACTGAACGAACATT 59.929 43.478 0.00 0.00 0.00 2.71
3142 10889 3.138304 TCCTCCAACTGAACGAACATTG 58.862 45.455 0.00 0.00 0.00 2.82
3143 10890 2.350772 CCTCCAACTGAACGAACATTGC 60.351 50.000 0.00 0.00 0.00 3.56
3144 10891 1.606668 TCCAACTGAACGAACATTGCC 59.393 47.619 0.00 0.00 0.00 4.52
3145 10892 1.662876 CCAACTGAACGAACATTGCCG 60.663 52.381 0.00 0.00 0.00 5.69
3146 10893 1.002900 CAACTGAACGAACATTGCCGT 60.003 47.619 0.00 0.00 41.14 5.68
3147 10894 2.157834 ACTGAACGAACATTGCCGTA 57.842 45.000 5.34 0.00 38.13 4.02
3148 10895 2.485903 ACTGAACGAACATTGCCGTAA 58.514 42.857 5.34 0.00 38.13 3.18
3149 10896 2.873472 ACTGAACGAACATTGCCGTAAA 59.127 40.909 5.34 0.00 38.13 2.01
3150 10897 3.059188 ACTGAACGAACATTGCCGTAAAG 60.059 43.478 5.34 8.13 38.13 1.85
3151 10898 2.239201 GAACGAACATTGCCGTAAAGC 58.761 47.619 5.34 0.00 38.13 3.51
3152 10899 0.519961 ACGAACATTGCCGTAAAGCC 59.480 50.000 3.33 0.00 37.23 4.35
3153 10900 0.802494 CGAACATTGCCGTAAAGCCT 59.198 50.000 0.00 0.00 0.00 4.58
3154 10901 2.004017 CGAACATTGCCGTAAAGCCTA 58.996 47.619 0.00 0.00 0.00 3.93
3155 10902 2.417239 CGAACATTGCCGTAAAGCCTAA 59.583 45.455 0.00 0.00 0.00 2.69
3156 10903 3.120130 CGAACATTGCCGTAAAGCCTAAA 60.120 43.478 0.00 0.00 0.00 1.85
3157 10904 4.614078 CGAACATTGCCGTAAAGCCTAAAA 60.614 41.667 0.00 0.00 0.00 1.52
3158 10905 5.400066 AACATTGCCGTAAAGCCTAAAAT 57.600 34.783 0.00 0.00 0.00 1.82
3159 10906 6.518208 AACATTGCCGTAAAGCCTAAAATA 57.482 33.333 0.00 0.00 0.00 1.40
3160 10907 6.518208 ACATTGCCGTAAAGCCTAAAATAA 57.482 33.333 0.00 0.00 0.00 1.40
3161 10908 6.926313 ACATTGCCGTAAAGCCTAAAATAAA 58.074 32.000 0.00 0.00 0.00 1.40
3162 10909 7.552459 ACATTGCCGTAAAGCCTAAAATAAAT 58.448 30.769 0.00 0.00 0.00 1.40
3163 10910 7.704899 ACATTGCCGTAAAGCCTAAAATAAATC 59.295 33.333 0.00 0.00 0.00 2.17
3164 10911 7.399245 TTGCCGTAAAGCCTAAAATAAATCT 57.601 32.000 0.00 0.00 0.00 2.40
3165 10912 8.508883 TTGCCGTAAAGCCTAAAATAAATCTA 57.491 30.769 0.00 0.00 0.00 1.98
3166 10913 8.149973 TGCCGTAAAGCCTAAAATAAATCTAG 57.850 34.615 0.00 0.00 0.00 2.43
3167 10914 7.988599 TGCCGTAAAGCCTAAAATAAATCTAGA 59.011 33.333 0.00 0.00 0.00 2.43
3168 10915 8.833493 GCCGTAAAGCCTAAAATAAATCTAGAA 58.167 33.333 0.00 0.00 0.00 2.10
3183 10930 7.448748 AAATCTAGAAAAATACAAGCACCGT 57.551 32.000 0.00 0.00 0.00 4.83
3184 10931 5.856126 TCTAGAAAAATACAAGCACCGTG 57.144 39.130 0.00 0.00 0.00 4.94
3185 10932 5.302360 TCTAGAAAAATACAAGCACCGTGT 58.698 37.500 0.00 0.00 0.00 4.49
3186 10933 4.483476 AGAAAAATACAAGCACCGTGTC 57.517 40.909 0.00 0.00 0.00 3.67
3187 10934 3.252458 AGAAAAATACAAGCACCGTGTCC 59.748 43.478 0.00 0.00 0.00 4.02
3188 10935 2.264005 AAATACAAGCACCGTGTCCA 57.736 45.000 0.00 0.00 0.00 4.02
3189 10936 2.264005 AATACAAGCACCGTGTCCAA 57.736 45.000 0.00 0.00 0.00 3.53
3190 10937 1.808411 ATACAAGCACCGTGTCCAAG 58.192 50.000 0.00 0.00 0.00 3.61
3191 10938 0.466543 TACAAGCACCGTGTCCAAGT 59.533 50.000 0.00 0.00 0.00 3.16
3192 10939 0.814010 ACAAGCACCGTGTCCAAGTC 60.814 55.000 0.00 0.00 0.00 3.01
3193 10940 0.532862 CAAGCACCGTGTCCAAGTCT 60.533 55.000 0.00 0.00 0.00 3.24
3194 10941 1.045407 AAGCACCGTGTCCAAGTCTA 58.955 50.000 0.00 0.00 0.00 2.59
3195 10942 0.603569 AGCACCGTGTCCAAGTCTAG 59.396 55.000 0.00 0.00 0.00 2.43
3196 10943 0.389948 GCACCGTGTCCAAGTCTAGG 60.390 60.000 0.00 0.00 0.00 3.02
3197 10944 1.254026 CACCGTGTCCAAGTCTAGGA 58.746 55.000 0.00 0.00 0.00 2.94
3198 10945 1.616865 CACCGTGTCCAAGTCTAGGAA 59.383 52.381 0.00 0.00 36.80 3.36
3199 10946 2.233922 CACCGTGTCCAAGTCTAGGAAT 59.766 50.000 0.00 0.00 36.80 3.01
3200 10947 2.904434 ACCGTGTCCAAGTCTAGGAATT 59.096 45.455 0.00 0.00 36.80 2.17
3201 10948 4.081862 CACCGTGTCCAAGTCTAGGAATTA 60.082 45.833 0.00 0.00 36.80 1.40
3202 10949 4.529377 ACCGTGTCCAAGTCTAGGAATTAA 59.471 41.667 0.00 0.00 36.80 1.40
3203 10950 5.012354 ACCGTGTCCAAGTCTAGGAATTAAA 59.988 40.000 0.00 0.00 36.80 1.52
3204 10951 5.350640 CCGTGTCCAAGTCTAGGAATTAAAC 59.649 44.000 0.00 0.00 36.80 2.01
3205 10952 5.350640 CGTGTCCAAGTCTAGGAATTAAACC 59.649 44.000 0.00 0.00 36.80 3.27
3206 10953 6.473758 GTGTCCAAGTCTAGGAATTAAACCT 58.526 40.000 9.09 9.09 41.05 3.50
3207 10954 6.940867 GTGTCCAAGTCTAGGAATTAAACCTT 59.059 38.462 9.34 0.00 38.76 3.50
3208 10955 6.940298 TGTCCAAGTCTAGGAATTAAACCTTG 59.060 38.462 9.34 8.07 38.76 3.61
3209 10956 6.374613 GTCCAAGTCTAGGAATTAAACCTTGG 59.625 42.308 9.34 8.44 38.76 3.61
3210 10957 6.045106 TCCAAGTCTAGGAATTAAACCTTGGT 59.955 38.462 13.12 0.00 38.76 3.67
3211 10958 6.151144 CCAAGTCTAGGAATTAAACCTTGGTG 59.849 42.308 9.34 7.39 38.76 4.17
3212 10959 5.816682 AGTCTAGGAATTAAACCTTGGTGG 58.183 41.667 9.34 0.00 38.76 4.61
3213 10960 4.948004 GTCTAGGAATTAAACCTTGGTGGG 59.052 45.833 9.34 0.00 41.11 4.61
3214 10961 2.536066 AGGAATTAAACCTTGGTGGGC 58.464 47.619 0.00 0.00 41.11 5.36
3215 10962 2.111792 AGGAATTAAACCTTGGTGGGCT 59.888 45.455 0.00 0.00 41.11 5.19
3216 10963 2.233676 GGAATTAAACCTTGGTGGGCTG 59.766 50.000 0.00 0.00 41.11 4.85
3217 10964 1.937191 ATTAAACCTTGGTGGGCTGG 58.063 50.000 0.00 0.00 41.11 4.85
3218 10965 0.558712 TTAAACCTTGGTGGGCTGGT 59.441 50.000 0.00 0.00 41.11 4.00
3219 10966 0.558712 TAAACCTTGGTGGGCTGGTT 59.441 50.000 0.00 0.00 43.73 3.67
3220 10967 0.759060 AAACCTTGGTGGGCTGGTTC 60.759 55.000 0.00 0.00 41.36 3.62
3221 10968 2.283173 CCTTGGTGGGCTGGTTCC 60.283 66.667 0.00 0.00 0.00 3.62
3222 10969 2.520458 CTTGGTGGGCTGGTTCCA 59.480 61.111 0.00 0.00 0.00 3.53
3226 10973 2.597510 GTGGGCTGGTTCCACCAC 60.598 66.667 13.34 13.34 44.79 4.16
3227 10974 3.099841 TGGGCTGGTTCCACCACA 61.100 61.111 10.75 0.12 44.79 4.17
3228 10975 2.197324 GGGCTGGTTCCACCACAA 59.803 61.111 10.75 0.00 44.79 3.33
3229 10976 1.903404 GGGCTGGTTCCACCACAAG 60.903 63.158 10.75 0.00 44.79 3.16
3230 10977 1.903404 GGCTGGTTCCACCACAAGG 60.903 63.158 0.00 0.00 44.79 3.61
3231 10978 1.150536 GCTGGTTCCACCACAAGGA 59.849 57.895 0.00 0.00 44.79 3.36
3232 10979 0.467290 GCTGGTTCCACCACAAGGAA 60.467 55.000 0.00 0.00 44.79 3.36
3240 10987 4.649267 TCCACCACAAGGAACATAATCA 57.351 40.909 0.00 0.00 38.69 2.57
3241 10988 5.191727 TCCACCACAAGGAACATAATCAT 57.808 39.130 0.00 0.00 38.69 2.45
3242 10989 5.192927 TCCACCACAAGGAACATAATCATC 58.807 41.667 0.00 0.00 38.69 2.92
3243 10990 4.339247 CCACCACAAGGAACATAATCATCC 59.661 45.833 0.00 0.00 38.69 3.51
3244 10991 5.195940 CACCACAAGGAACATAATCATCCT 58.804 41.667 0.00 0.00 45.43 3.24
3245 10992 6.356556 CACCACAAGGAACATAATCATCCTA 58.643 40.000 0.00 0.00 42.72 2.94
3246 10993 6.484643 CACCACAAGGAACATAATCATCCTAG 59.515 42.308 0.00 0.00 42.72 3.02
3247 10994 5.471456 CCACAAGGAACATAATCATCCTAGC 59.529 44.000 0.00 0.00 42.72 3.42
3248 10995 6.294473 CACAAGGAACATAATCATCCTAGCT 58.706 40.000 0.00 0.00 42.72 3.32
3249 10996 6.204301 CACAAGGAACATAATCATCCTAGCTG 59.796 42.308 0.00 0.00 42.72 4.24
3250 10997 4.904241 AGGAACATAATCATCCTAGCTGC 58.096 43.478 0.00 0.00 41.74 5.25
3251 10998 4.596643 AGGAACATAATCATCCTAGCTGCT 59.403 41.667 7.57 7.57 41.74 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.659172 TGGGCCTTGGTCCTTGCG 62.659 66.667 11.92 0.00 0.00 4.85
17 18 3.984732 GCCTGGGCCTTGGTCCTT 61.985 66.667 11.92 0.00 34.56 3.36
52 58 5.638234 CCCAAGCTACAGTTCTACAGTAAAC 59.362 44.000 0.00 0.00 0.00 2.01
58 64 1.278127 GGCCCAAGCTACAGTTCTACA 59.722 52.381 0.00 0.00 39.73 2.74
59 65 1.555533 AGGCCCAAGCTACAGTTCTAC 59.444 52.381 0.00 0.00 39.73 2.59
63 69 0.036875 GTGAGGCCCAAGCTACAGTT 59.963 55.000 0.00 0.00 39.73 3.16
65 71 1.448540 CGTGAGGCCCAAGCTACAG 60.449 63.158 0.00 0.00 39.73 2.74
67 73 2.820037 GCGTGAGGCCCAAGCTAC 60.820 66.667 19.52 2.67 45.01 3.58
107 113 2.125350 GCGAAGACAGGCCTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
130 136 1.386533 ATGCAGATTTCAAGCGGGAG 58.613 50.000 0.00 0.00 0.00 4.30
133 139 2.925578 TCAATGCAGATTTCAAGCGG 57.074 45.000 0.00 0.00 0.00 5.52
146 158 4.644103 ACTAATCCACATGCTTCAATGC 57.356 40.909 0.00 0.00 0.00 3.56
156 168 8.691661 AACAAGAAGTTGTAACTAATCCACAT 57.308 30.769 0.00 0.00 46.68 3.21
171 183 2.095853 CACACTGACGCAACAAGAAGTT 59.904 45.455 0.00 0.00 42.42 2.66
172 184 1.665679 CACACTGACGCAACAAGAAGT 59.334 47.619 0.00 0.00 0.00 3.01
173 185 1.933181 TCACACTGACGCAACAAGAAG 59.067 47.619 0.00 0.00 0.00 2.85
174 186 1.933181 CTCACACTGACGCAACAAGAA 59.067 47.619 0.00 0.00 0.00 2.52
175 187 1.570813 CTCACACTGACGCAACAAGA 58.429 50.000 0.00 0.00 0.00 3.02
176 188 0.583438 CCTCACACTGACGCAACAAG 59.417 55.000 0.00 0.00 0.00 3.16
177 189 0.107897 ACCTCACACTGACGCAACAA 60.108 50.000 0.00 0.00 0.00 2.83
178 190 0.107897 AACCTCACACTGACGCAACA 60.108 50.000 0.00 0.00 0.00 3.33
179 191 1.014352 AAACCTCACACTGACGCAAC 58.986 50.000 0.00 0.00 0.00 4.17
180 192 1.400142 CAAAACCTCACACTGACGCAA 59.600 47.619 0.00 0.00 0.00 4.85
181 193 1.013596 CAAAACCTCACACTGACGCA 58.986 50.000 0.00 0.00 0.00 5.24
182 194 0.317020 GCAAAACCTCACACTGACGC 60.317 55.000 0.00 0.00 0.00 5.19
183 195 1.299541 AGCAAAACCTCACACTGACG 58.700 50.000 0.00 0.00 0.00 4.35
184 196 2.945668 AGAAGCAAAACCTCACACTGAC 59.054 45.455 0.00 0.00 0.00 3.51
185 197 3.281727 AGAAGCAAAACCTCACACTGA 57.718 42.857 0.00 0.00 0.00 3.41
186 198 4.376340 AAAGAAGCAAAACCTCACACTG 57.624 40.909 0.00 0.00 0.00 3.66
187 199 5.405935 AAAAAGAAGCAAAACCTCACACT 57.594 34.783 0.00 0.00 0.00 3.55
212 224 7.083875 ACGAATTTCAAAACAAGAGAGAACA 57.916 32.000 0.00 0.00 0.00 3.18
213 225 7.971004 AACGAATTTCAAAACAAGAGAGAAC 57.029 32.000 0.00 0.00 0.00 3.01
234 246 7.171447 TGTGGCTGAATTATTTTTGAAAACG 57.829 32.000 0.00 0.00 0.00 3.60
274 286 3.475566 AAGCAAACTGTAGCTCACTGA 57.524 42.857 7.93 0.00 40.90 3.41
293 305 0.465824 TTCGGTCCTTTGGGCGAAAA 60.466 50.000 0.00 0.00 35.36 2.29
294 306 0.465824 TTTCGGTCCTTTGGGCGAAA 60.466 50.000 0.00 0.00 41.32 3.46
298 310 0.966179 AACATTTCGGTCCTTTGGGC 59.034 50.000 0.00 0.00 0.00 5.36
299 311 2.030274 GTGAACATTTCGGTCCTTTGGG 60.030 50.000 0.00 0.00 0.00 4.12
362 374 6.325919 ACACAAGAGTTCAAACAAACTTCA 57.674 33.333 0.00 0.00 39.55 3.02
366 378 9.221775 CAGTAATACACAAGAGTTCAAACAAAC 57.778 33.333 0.00 0.00 0.00 2.93
377 389 6.929049 TCACCTGTTTCAGTAATACACAAGAG 59.071 38.462 0.00 0.00 0.00 2.85
396 408 5.334879 CCTTTCGGTCAAAGTATTTCACCTG 60.335 44.000 0.00 0.00 40.15 4.00
397 409 4.760204 CCTTTCGGTCAAAGTATTTCACCT 59.240 41.667 0.00 0.00 40.15 4.00
398 410 4.517832 ACCTTTCGGTCAAAGTATTTCACC 59.482 41.667 0.00 0.00 40.27 4.02
400 412 7.804843 TTTACCTTTCGGTCAAAGTATTTCA 57.195 32.000 0.00 0.00 44.21 2.69
405 417 6.767456 TGGTATTTACCTTTCGGTCAAAGTA 58.233 36.000 8.19 0.00 46.58 2.24
406 418 5.623169 TGGTATTTACCTTTCGGTCAAAGT 58.377 37.500 8.19 0.00 46.58 2.66
410 422 6.239396 TGAAATGGTATTTACCTTTCGGTCA 58.761 36.000 17.34 11.81 46.58 4.02
411 423 6.746745 TGAAATGGTATTTACCTTTCGGTC 57.253 37.500 17.34 10.24 46.58 4.79
412 424 7.712204 ATTGAAATGGTATTTACCTTTCGGT 57.288 32.000 17.34 0.00 46.58 4.69
462 3927 7.944061 AGTGAAATGTCAATGAAATTCACTGA 58.056 30.769 25.30 2.76 31.22 3.41
472 3937 8.559536 GTTCAGTCTTTAGTGAAATGTCAATGA 58.440 33.333 0.00 0.00 44.64 2.57
474 3939 7.307989 CGGTTCAGTCTTTAGTGAAATGTCAAT 60.308 37.037 0.00 0.00 44.64 2.57
479 3944 6.539649 TTCGGTTCAGTCTTTAGTGAAATG 57.460 37.500 0.00 0.00 44.64 2.32
482 3947 5.522460 CACTTTCGGTTCAGTCTTTAGTGAA 59.478 40.000 0.00 0.00 41.70 3.18
485 3950 5.272283 TCACTTTCGGTTCAGTCTTTAGT 57.728 39.130 0.00 0.00 0.00 2.24
486 3951 6.598753 TTTCACTTTCGGTTCAGTCTTTAG 57.401 37.500 0.00 0.00 0.00 1.85
487 3952 6.183360 GGTTTTCACTTTCGGTTCAGTCTTTA 60.183 38.462 0.00 0.00 0.00 1.85
488 3953 5.392703 GGTTTTCACTTTCGGTTCAGTCTTT 60.393 40.000 0.00 0.00 0.00 2.52
489 3954 4.095932 GGTTTTCACTTTCGGTTCAGTCTT 59.904 41.667 0.00 0.00 0.00 3.01
490 3955 3.626217 GGTTTTCACTTTCGGTTCAGTCT 59.374 43.478 0.00 0.00 0.00 3.24
491 3956 3.375922 TGGTTTTCACTTTCGGTTCAGTC 59.624 43.478 0.00 0.00 0.00 3.51
514 3979 1.228184 GGGGAGAGATGCATGCAGG 60.228 63.158 26.69 0.00 0.00 4.85
515 3980 0.250381 GAGGGGAGAGATGCATGCAG 60.250 60.000 26.69 0.00 0.00 4.41
523 3988 1.701757 TCGGAGGGAGGGGAGAGAT 60.702 63.158 0.00 0.00 0.00 2.75
587 4052 9.753674 AAATTTAATCTTAGATCCACAGTTCCA 57.246 29.630 0.00 0.00 0.00 3.53
609 4076 6.599445 AGAGCTGCTATCCACTGATAAAATT 58.401 36.000 0.15 0.00 33.13 1.82
610 4077 6.185114 AGAGCTGCTATCCACTGATAAAAT 57.815 37.500 0.15 0.00 33.13 1.82
901 4373 3.130516 AGCATGTATATATACGCGTGGCT 59.869 43.478 24.59 15.60 36.06 4.75
994 4466 1.336440 CGAGAAGTCAGCCATCGAGAT 59.664 52.381 0.00 0.00 35.47 2.75
1252 4732 7.927048 TCTCTGCATCACAAGAAATTATCATG 58.073 34.615 0.00 0.00 33.00 3.07
1256 4736 7.255173 GCATCTCTCTGCATCACAAGAAATTAT 60.255 37.037 0.00 0.00 41.87 1.28
1257 4737 6.037940 GCATCTCTCTGCATCACAAGAAATTA 59.962 38.462 0.00 0.00 41.87 1.40
1258 4738 5.163642 GCATCTCTCTGCATCACAAGAAATT 60.164 40.000 0.00 0.00 41.87 1.82
1266 4750 0.879400 CCGGCATCTCTCTGCATCAC 60.879 60.000 0.00 0.00 44.12 3.06
1384 4868 2.345991 CTTCCCGTCGCCTTCCAA 59.654 61.111 0.00 0.00 0.00 3.53
1399 4883 1.675641 GCGGATGCACTTGTCCCTT 60.676 57.895 0.00 0.00 42.15 3.95
1477 4961 4.373116 TCGGACTTCTGCCCGTGC 62.373 66.667 0.00 0.00 45.48 5.34
1483 4967 0.532573 TGATCCAGTCGGACTTCTGC 59.467 55.000 8.18 0.00 46.79 4.26
1564 5048 5.590663 GGGAAGGGATTTTAAGACAGATCAC 59.409 44.000 0.00 0.00 0.00 3.06
1565 5049 5.629133 CGGGAAGGGATTTTAAGACAGATCA 60.629 44.000 0.00 0.00 0.00 2.92
1570 5054 3.073356 ACACGGGAAGGGATTTTAAGACA 59.927 43.478 0.00 0.00 0.00 3.41
1576 5060 4.098894 TCTAGTACACGGGAAGGGATTTT 58.901 43.478 0.00 0.00 0.00 1.82
1594 5078 5.091910 CATGCATGCATACACAGTTCTAG 57.908 43.478 31.73 11.91 34.91 2.43
1672 5164 1.101635 CCTCCTGCATGCACCATCAG 61.102 60.000 18.46 5.77 0.00 2.90
1679 5171 0.179001 CATCCATCCTCCTGCATGCA 60.179 55.000 21.29 21.29 0.00 3.96
1969 5461 2.214216 CCGGTGGTTGGTGAGGAGA 61.214 63.158 0.00 0.00 0.00 3.71
2615 8268 7.317842 TGGAAGTTAAATACAACAACGAACA 57.682 32.000 0.00 0.00 0.00 3.18
2646 8299 7.870954 ACGAGTGAGTAACAATTAACAAGATGA 59.129 33.333 0.00 0.00 0.00 2.92
2730 10477 9.337396 TGTTATGTCACTTGAATTAGACTTGTT 57.663 29.630 0.00 0.00 32.41 2.83
2731 10478 8.902540 TGTTATGTCACTTGAATTAGACTTGT 57.097 30.769 0.00 0.00 32.41 3.16
2741 10488 4.565022 TCTCGCATGTTATGTCACTTGAA 58.435 39.130 0.00 0.00 0.00 2.69
2770 10517 9.151177 AGCAATATTCATGGGATCATTTAGTTT 57.849 29.630 0.00 0.00 0.00 2.66
2771 10518 8.716674 AGCAATATTCATGGGATCATTTAGTT 57.283 30.769 0.00 0.00 0.00 2.24
2772 10519 8.716674 AAGCAATATTCATGGGATCATTTAGT 57.283 30.769 0.00 0.00 0.00 2.24
2773 10520 7.966753 CGAAGCAATATTCATGGGATCATTTAG 59.033 37.037 0.00 0.00 0.00 1.85
2774 10521 7.665145 TCGAAGCAATATTCATGGGATCATTTA 59.335 33.333 0.00 0.00 0.00 1.40
2777 10524 5.413833 GTCGAAGCAATATTCATGGGATCAT 59.586 40.000 0.00 0.00 0.00 2.45
2778 10525 4.756642 GTCGAAGCAATATTCATGGGATCA 59.243 41.667 0.00 0.00 0.00 2.92
2786 10533 8.414003 ACTATGTCTTAGTCGAAGCAATATTCA 58.586 33.333 0.00 0.00 36.34 2.57
2820 10567 0.033796 TACTCCCTCCGTTCCGACAT 60.034 55.000 0.00 0.00 0.00 3.06
2821 10568 0.679002 CTACTCCCTCCGTTCCGACA 60.679 60.000 0.00 0.00 0.00 4.35
2825 10572 2.134789 TACACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
2836 10583 6.049955 TCCTTTTAGCAAGCATACACTACT 57.950 37.500 0.00 0.00 0.00 2.57
2840 10587 7.360101 CCGTATATCCTTTTAGCAAGCATACAC 60.360 40.741 0.00 0.00 0.00 2.90
2849 10596 6.659745 TTAGCTCCGTATATCCTTTTAGCA 57.340 37.500 0.00 0.00 0.00 3.49
2864 10611 3.126001 TGGCCTCATTAATTAGCTCCG 57.874 47.619 3.32 0.00 0.00 4.63
2873 10620 7.410174 TCTCTCCTTAATTTTGGCCTCATTAA 58.590 34.615 3.32 9.06 0.00 1.40
2879 10626 9.936329 TTTATTATCTCTCCTTAATTTTGGCCT 57.064 29.630 3.32 0.00 0.00 5.19
2938 10685 1.834188 AAAATGTCACGGGGATGGAC 58.166 50.000 0.00 0.00 0.00 4.02
2958 10705 6.804770 ATATTTGCGGTTGTACTGTGTTAA 57.195 33.333 0.00 0.00 0.00 2.01
2959 10706 6.427242 TGAATATTTGCGGTTGTACTGTGTTA 59.573 34.615 0.00 0.00 0.00 2.41
2960 10707 5.239744 TGAATATTTGCGGTTGTACTGTGTT 59.760 36.000 0.00 0.00 0.00 3.32
2961 10708 4.757657 TGAATATTTGCGGTTGTACTGTGT 59.242 37.500 0.00 0.00 0.00 3.72
2962 10709 5.289917 TGAATATTTGCGGTTGTACTGTG 57.710 39.130 0.00 0.00 0.00 3.66
2963 10710 7.801716 ATATGAATATTTGCGGTTGTACTGT 57.198 32.000 0.00 0.00 0.00 3.55
2964 10711 8.769891 TGTATATGAATATTTGCGGTTGTACTG 58.230 33.333 0.00 0.00 0.00 2.74
2965 10712 8.770828 GTGTATATGAATATTTGCGGTTGTACT 58.229 33.333 0.00 0.00 0.00 2.73
2966 10713 7.738609 CGTGTATATGAATATTTGCGGTTGTAC 59.261 37.037 0.00 0.00 0.00 2.90
2967 10714 7.438757 ACGTGTATATGAATATTTGCGGTTGTA 59.561 33.333 0.00 0.00 0.00 2.41
2968 10715 6.259167 ACGTGTATATGAATATTTGCGGTTGT 59.741 34.615 0.00 0.00 0.00 3.32
2969 10716 6.655062 ACGTGTATATGAATATTTGCGGTTG 58.345 36.000 0.00 0.00 0.00 3.77
2970 10717 6.854496 ACGTGTATATGAATATTTGCGGTT 57.146 33.333 0.00 0.00 0.00 4.44
2971 10718 6.924612 TGTACGTGTATATGAATATTTGCGGT 59.075 34.615 0.00 0.00 0.00 5.68
2972 10719 7.341024 TGTACGTGTATATGAATATTTGCGG 57.659 36.000 0.00 0.00 0.00 5.69
2973 10720 8.432359 ACATGTACGTGTATATGAATATTTGCG 58.568 33.333 19.15 0.00 37.85 4.85
2980 10727 8.080417 GGTGAGTACATGTACGTGTATATGAAT 58.920 37.037 26.42 9.09 40.80 2.57
2981 10728 7.420002 GGTGAGTACATGTACGTGTATATGAA 58.580 38.462 26.42 6.61 40.80 2.57
2982 10729 6.016860 GGGTGAGTACATGTACGTGTATATGA 60.017 42.308 26.42 12.99 40.80 2.15
2983 10730 6.147581 GGGTGAGTACATGTACGTGTATATG 58.852 44.000 26.42 13.23 40.80 1.78
2984 10731 5.049198 CGGGTGAGTACATGTACGTGTATAT 60.049 44.000 26.42 19.30 40.80 0.86
2985 10732 4.273235 CGGGTGAGTACATGTACGTGTATA 59.727 45.833 26.42 15.41 40.80 1.47
2986 10733 3.065786 CGGGTGAGTACATGTACGTGTAT 59.934 47.826 26.42 16.91 40.80 2.29
2987 10734 2.419673 CGGGTGAGTACATGTACGTGTA 59.580 50.000 26.17 21.43 40.80 2.90
2988 10735 1.200716 CGGGTGAGTACATGTACGTGT 59.799 52.381 26.17 23.50 40.80 4.49
2989 10736 1.469703 TCGGGTGAGTACATGTACGTG 59.530 52.381 26.17 13.64 40.80 4.49
2990 10737 1.825090 TCGGGTGAGTACATGTACGT 58.175 50.000 26.17 16.52 40.80 3.57
2991 10738 2.356695 TCATCGGGTGAGTACATGTACG 59.643 50.000 26.17 15.70 40.80 3.67
2992 10739 4.380841 TTCATCGGGTGAGTACATGTAC 57.619 45.455 25.51 25.51 38.29 2.90
2993 10740 4.739436 GCATTCATCGGGTGAGTACATGTA 60.739 45.833 0.08 0.08 38.29 2.29
2994 10741 3.797039 CATTCATCGGGTGAGTACATGT 58.203 45.455 2.69 2.69 38.29 3.21
2995 10742 2.545526 GCATTCATCGGGTGAGTACATG 59.454 50.000 0.00 0.00 38.29 3.21
2996 10743 2.170397 TGCATTCATCGGGTGAGTACAT 59.830 45.455 0.00 0.00 38.29 2.29
2997 10744 1.552792 TGCATTCATCGGGTGAGTACA 59.447 47.619 0.00 0.00 38.29 2.90
2998 10745 2.309528 TGCATTCATCGGGTGAGTAC 57.690 50.000 0.00 0.00 38.29 2.73
2999 10746 3.111853 GATGCATTCATCGGGTGAGTA 57.888 47.619 0.00 0.00 39.63 2.59
3000 10747 1.959042 GATGCATTCATCGGGTGAGT 58.041 50.000 0.00 0.00 39.63 3.41
3015 10762 0.744414 ATGTAGGGTGTGCGTGATGC 60.744 55.000 0.00 0.00 46.70 3.91
3016 10763 1.737838 AATGTAGGGTGTGCGTGATG 58.262 50.000 0.00 0.00 0.00 3.07
3017 10764 2.487762 CAAAATGTAGGGTGTGCGTGAT 59.512 45.455 0.00 0.00 0.00 3.06
3018 10765 1.876799 CAAAATGTAGGGTGTGCGTGA 59.123 47.619 0.00 0.00 0.00 4.35
3019 10766 1.876799 TCAAAATGTAGGGTGTGCGTG 59.123 47.619 0.00 0.00 0.00 5.34
3020 10767 2.151202 CTCAAAATGTAGGGTGTGCGT 58.849 47.619 0.00 0.00 0.00 5.24
3021 10768 1.135689 GCTCAAAATGTAGGGTGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
3022 10769 1.885887 TGCTCAAAATGTAGGGTGTGC 59.114 47.619 0.00 0.00 0.00 4.57
3023 10770 2.228822 GGTGCTCAAAATGTAGGGTGTG 59.771 50.000 0.00 0.00 0.00 3.82
3024 10771 2.108250 AGGTGCTCAAAATGTAGGGTGT 59.892 45.455 0.00 0.00 0.00 4.16
3025 10772 2.749621 GAGGTGCTCAAAATGTAGGGTG 59.250 50.000 0.00 0.00 0.00 4.61
3026 10773 2.290960 GGAGGTGCTCAAAATGTAGGGT 60.291 50.000 0.00 0.00 31.08 4.34
3027 10774 2.369394 GGAGGTGCTCAAAATGTAGGG 58.631 52.381 0.00 0.00 31.08 3.53
3028 10775 2.009774 CGGAGGTGCTCAAAATGTAGG 58.990 52.381 0.00 0.00 31.08 3.18
3045 10792 0.616395 TGTTGGCTCTGTATCCCGGA 60.616 55.000 0.73 0.00 0.00 5.14
3046 10793 0.462047 GTGTTGGCTCTGTATCCCGG 60.462 60.000 0.00 0.00 0.00 5.73
3047 10794 0.249120 TGTGTTGGCTCTGTATCCCG 59.751 55.000 0.00 0.00 0.00 5.14
3048 10795 2.489938 TTGTGTTGGCTCTGTATCCC 57.510 50.000 0.00 0.00 0.00 3.85
3049 10796 5.615289 AGATATTGTGTTGGCTCTGTATCC 58.385 41.667 0.00 0.00 0.00 2.59
3050 10797 6.763135 TCAAGATATTGTGTTGGCTCTGTATC 59.237 38.462 0.00 0.00 32.25 2.24
3051 10798 6.653020 TCAAGATATTGTGTTGGCTCTGTAT 58.347 36.000 0.00 0.00 32.25 2.29
3052 10799 6.048732 TCAAGATATTGTGTTGGCTCTGTA 57.951 37.500 0.00 0.00 32.25 2.74
3053 10800 4.910195 TCAAGATATTGTGTTGGCTCTGT 58.090 39.130 0.00 0.00 32.25 3.41
3054 10801 5.181009 TCTCAAGATATTGTGTTGGCTCTG 58.819 41.667 0.00 0.00 32.25 3.35
3055 10802 5.426689 TCTCAAGATATTGTGTTGGCTCT 57.573 39.130 0.00 0.00 32.25 4.09
3056 10803 6.317140 TCAATCTCAAGATATTGTGTTGGCTC 59.683 38.462 0.00 0.00 35.16 4.70
3057 10804 6.182627 TCAATCTCAAGATATTGTGTTGGCT 58.817 36.000 0.00 0.00 35.16 4.75
3058 10805 6.441093 TCAATCTCAAGATATTGTGTTGGC 57.559 37.500 0.00 0.00 35.16 4.52
3059 10806 8.217131 TCATCAATCTCAAGATATTGTGTTGG 57.783 34.615 0.00 0.00 35.16 3.77
3060 10807 9.717892 CTTCATCAATCTCAAGATATTGTGTTG 57.282 33.333 0.00 5.77 35.16 3.33
3061 10808 9.458727 ACTTCATCAATCTCAAGATATTGTGTT 57.541 29.630 0.00 0.00 35.16 3.32
3062 10809 9.107177 GACTTCATCAATCTCAAGATATTGTGT 57.893 33.333 0.00 2.78 35.16 3.72
3063 10810 9.106070 TGACTTCATCAATCTCAAGATATTGTG 57.894 33.333 0.00 0.00 35.16 3.33
3064 10811 9.848710 ATGACTTCATCAATCTCAAGATATTGT 57.151 29.630 0.00 0.00 41.93 2.71
3081 10828 3.262660 TGAGGAGCTTGTGATGACTTCAT 59.737 43.478 0.00 0.00 36.54 2.57
3082 10829 2.634453 TGAGGAGCTTGTGATGACTTCA 59.366 45.455 0.00 0.00 0.00 3.02
3083 10830 3.325293 TGAGGAGCTTGTGATGACTTC 57.675 47.619 0.00 0.00 0.00 3.01
3084 10831 3.777106 TTGAGGAGCTTGTGATGACTT 57.223 42.857 0.00 0.00 0.00 3.01
3085 10832 3.072184 ACTTTGAGGAGCTTGTGATGACT 59.928 43.478 0.00 0.00 0.00 3.41
3086 10833 3.406764 ACTTTGAGGAGCTTGTGATGAC 58.593 45.455 0.00 0.00 0.00 3.06
3087 10834 3.668447 GACTTTGAGGAGCTTGTGATGA 58.332 45.455 0.00 0.00 0.00 2.92
3088 10835 2.414481 CGACTTTGAGGAGCTTGTGATG 59.586 50.000 0.00 0.00 0.00 3.07
3089 10836 2.300152 TCGACTTTGAGGAGCTTGTGAT 59.700 45.455 0.00 0.00 0.00 3.06
3090 10837 1.686587 TCGACTTTGAGGAGCTTGTGA 59.313 47.619 0.00 0.00 0.00 3.58
3091 10838 2.064762 CTCGACTTTGAGGAGCTTGTG 58.935 52.381 0.00 0.00 32.18 3.33
3092 10839 2.447244 CTCGACTTTGAGGAGCTTGT 57.553 50.000 0.00 0.00 32.18 3.16
3100 10847 0.317479 ACGTTCCCCTCGACTTTGAG 59.683 55.000 0.00 0.00 35.70 3.02
3101 10848 0.316204 GACGTTCCCCTCGACTTTGA 59.684 55.000 0.00 0.00 0.00 2.69
3102 10849 0.317479 AGACGTTCCCCTCGACTTTG 59.683 55.000 0.00 0.00 30.62 2.77
3103 10850 0.602060 GAGACGTTCCCCTCGACTTT 59.398 55.000 0.00 0.00 34.20 2.66
3104 10851 1.249469 GGAGACGTTCCCCTCGACTT 61.249 60.000 0.00 0.00 40.37 3.01
3105 10852 1.678300 GGAGACGTTCCCCTCGACT 60.678 63.158 0.00 0.00 40.37 4.18
3106 10853 2.883621 GGAGACGTTCCCCTCGAC 59.116 66.667 0.00 0.00 40.37 4.20
3114 10861 2.405172 GTTCAGTTGGAGGAGACGTTC 58.595 52.381 0.00 0.00 0.00 3.95
3115 10862 1.269621 CGTTCAGTTGGAGGAGACGTT 60.270 52.381 0.00 0.00 0.00 3.99
3116 10863 0.314302 CGTTCAGTTGGAGGAGACGT 59.686 55.000 0.00 0.00 0.00 4.34
3117 10864 0.596577 TCGTTCAGTTGGAGGAGACG 59.403 55.000 0.00 0.00 0.00 4.18
3118 10865 2.223971 TGTTCGTTCAGTTGGAGGAGAC 60.224 50.000 0.00 0.00 0.00 3.36
3119 10866 2.036387 TGTTCGTTCAGTTGGAGGAGA 58.964 47.619 0.00 0.00 0.00 3.71
3120 10867 2.526304 TGTTCGTTCAGTTGGAGGAG 57.474 50.000 0.00 0.00 0.00 3.69
3121 10868 3.138304 CAATGTTCGTTCAGTTGGAGGA 58.862 45.455 0.00 0.00 0.00 3.71
3122 10869 2.350772 GCAATGTTCGTTCAGTTGGAGG 60.351 50.000 0.00 0.00 0.00 4.30
3123 10870 2.350772 GGCAATGTTCGTTCAGTTGGAG 60.351 50.000 0.00 0.00 0.00 3.86
3124 10871 1.606668 GGCAATGTTCGTTCAGTTGGA 59.393 47.619 0.00 0.00 0.00 3.53
3125 10872 1.662876 CGGCAATGTTCGTTCAGTTGG 60.663 52.381 0.00 0.00 0.00 3.77
3126 10873 1.002900 ACGGCAATGTTCGTTCAGTTG 60.003 47.619 0.00 0.00 36.04 3.16
3127 10874 1.305201 ACGGCAATGTTCGTTCAGTT 58.695 45.000 0.00 0.00 36.04 3.16
3128 10875 2.157834 TACGGCAATGTTCGTTCAGT 57.842 45.000 8.69 0.00 40.31 3.41
3129 10876 3.479006 CTTTACGGCAATGTTCGTTCAG 58.521 45.455 8.69 3.27 40.31 3.02
3130 10877 2.350007 GCTTTACGGCAATGTTCGTTCA 60.350 45.455 8.69 0.00 40.31 3.18
3131 10878 2.239201 GCTTTACGGCAATGTTCGTTC 58.761 47.619 8.69 0.00 40.31 3.95
3132 10879 1.068816 GGCTTTACGGCAATGTTCGTT 60.069 47.619 8.69 0.00 40.31 3.85
3133 10880 0.519961 GGCTTTACGGCAATGTTCGT 59.480 50.000 8.49 8.49 42.55 3.85
3134 10881 0.802494 AGGCTTTACGGCAATGTTCG 59.198 50.000 0.00 0.00 41.46 3.95
3135 10882 4.428615 TTTAGGCTTTACGGCAATGTTC 57.571 40.909 0.00 0.00 41.46 3.18
3136 10883 4.857509 TTTTAGGCTTTACGGCAATGTT 57.142 36.364 0.00 0.00 41.46 2.71
3137 10884 6.518208 TTATTTTAGGCTTTACGGCAATGT 57.482 33.333 0.00 0.00 41.46 2.71
3138 10885 7.920682 AGATTTATTTTAGGCTTTACGGCAATG 59.079 33.333 0.00 0.00 41.46 2.82
3139 10886 8.007405 AGATTTATTTTAGGCTTTACGGCAAT 57.993 30.769 0.00 0.00 41.46 3.56
3140 10887 7.399245 AGATTTATTTTAGGCTTTACGGCAA 57.601 32.000 0.00 0.00 41.46 4.52
3141 10888 7.988599 TCTAGATTTATTTTAGGCTTTACGGCA 59.011 33.333 0.00 0.00 41.46 5.69
3142 10889 8.374327 TCTAGATTTATTTTAGGCTTTACGGC 57.626 34.615 0.00 0.00 38.75 5.68
3157 10904 9.174166 ACGGTGCTTGTATTTTTCTAGATTTAT 57.826 29.630 0.00 0.00 0.00 1.40
3158 10905 8.447833 CACGGTGCTTGTATTTTTCTAGATTTA 58.552 33.333 0.00 0.00 0.00 1.40
3159 10906 7.040686 ACACGGTGCTTGTATTTTTCTAGATTT 60.041 33.333 8.30 0.00 0.00 2.17
3160 10907 6.430000 ACACGGTGCTTGTATTTTTCTAGATT 59.570 34.615 8.30 0.00 0.00 2.40
3161 10908 5.938125 ACACGGTGCTTGTATTTTTCTAGAT 59.062 36.000 8.30 0.00 0.00 1.98
3162 10909 5.302360 ACACGGTGCTTGTATTTTTCTAGA 58.698 37.500 8.30 0.00 0.00 2.43
3163 10910 5.390567 GGACACGGTGCTTGTATTTTTCTAG 60.391 44.000 8.30 0.00 0.00 2.43
3164 10911 4.453136 GGACACGGTGCTTGTATTTTTCTA 59.547 41.667 8.30 0.00 0.00 2.10
3165 10912 3.252458 GGACACGGTGCTTGTATTTTTCT 59.748 43.478 8.30 0.00 0.00 2.52
3166 10913 3.003897 TGGACACGGTGCTTGTATTTTTC 59.996 43.478 8.30 0.00 0.00 2.29
3167 10914 2.952978 TGGACACGGTGCTTGTATTTTT 59.047 40.909 8.30 0.00 0.00 1.94
3168 10915 2.577700 TGGACACGGTGCTTGTATTTT 58.422 42.857 8.30 0.00 0.00 1.82
3169 10916 2.264005 TGGACACGGTGCTTGTATTT 57.736 45.000 8.30 0.00 0.00 1.40
3170 10917 2.151202 CTTGGACACGGTGCTTGTATT 58.849 47.619 8.30 0.00 0.00 1.89
3171 10918 1.071699 ACTTGGACACGGTGCTTGTAT 59.928 47.619 8.30 0.00 0.00 2.29
3172 10919 0.466543 ACTTGGACACGGTGCTTGTA 59.533 50.000 8.30 0.00 0.00 2.41
3173 10920 0.814010 GACTTGGACACGGTGCTTGT 60.814 55.000 8.30 0.48 0.00 3.16
3174 10921 0.532862 AGACTTGGACACGGTGCTTG 60.533 55.000 8.30 0.00 0.00 4.01
3175 10922 1.000955 CTAGACTTGGACACGGTGCTT 59.999 52.381 8.30 0.00 0.00 3.91
3176 10923 0.603569 CTAGACTTGGACACGGTGCT 59.396 55.000 8.30 0.00 0.00 4.40
3177 10924 0.389948 CCTAGACTTGGACACGGTGC 60.390 60.000 8.30 0.93 0.00 5.01
3178 10925 1.254026 TCCTAGACTTGGACACGGTG 58.746 55.000 6.58 6.58 0.00 4.94
3179 10926 2.005370 TTCCTAGACTTGGACACGGT 57.995 50.000 5.02 0.00 32.65 4.83
3180 10927 3.611766 AATTCCTAGACTTGGACACGG 57.388 47.619 5.02 0.00 32.65 4.94
3181 10928 5.350640 GGTTTAATTCCTAGACTTGGACACG 59.649 44.000 5.02 0.00 32.65 4.49
3182 10929 6.473758 AGGTTTAATTCCTAGACTTGGACAC 58.526 40.000 5.02 0.00 33.04 3.67
3183 10930 6.697641 AGGTTTAATTCCTAGACTTGGACA 57.302 37.500 5.02 0.00 33.04 4.02
3184 10931 6.374613 CCAAGGTTTAATTCCTAGACTTGGAC 59.625 42.308 13.29 0.00 32.63 4.02
3185 10932 6.045106 ACCAAGGTTTAATTCCTAGACTTGGA 59.955 38.462 22.48 1.04 34.14 3.53
3186 10933 6.151144 CACCAAGGTTTAATTCCTAGACTTGG 59.849 42.308 16.11 16.11 35.36 3.61
3187 10934 6.151144 CCACCAAGGTTTAATTCCTAGACTTG 59.849 42.308 0.00 0.00 34.56 3.16
3188 10935 6.246163 CCACCAAGGTTTAATTCCTAGACTT 58.754 40.000 0.00 0.00 34.56 3.01
3189 10936 5.281037 CCCACCAAGGTTTAATTCCTAGACT 60.281 44.000 0.00 0.00 34.56 3.24
3190 10937 4.948004 CCCACCAAGGTTTAATTCCTAGAC 59.052 45.833 0.00 0.00 34.56 2.59
3191 10938 4.569015 GCCCACCAAGGTTTAATTCCTAGA 60.569 45.833 0.00 0.00 34.56 2.43
3192 10939 3.699538 GCCCACCAAGGTTTAATTCCTAG 59.300 47.826 0.00 0.00 34.56 3.02
3193 10940 3.335484 AGCCCACCAAGGTTTAATTCCTA 59.665 43.478 0.00 0.00 34.56 2.94
3194 10941 2.111792 AGCCCACCAAGGTTTAATTCCT 59.888 45.455 0.00 0.00 36.81 3.36
3195 10942 2.233676 CAGCCCACCAAGGTTTAATTCC 59.766 50.000 0.00 0.00 34.66 3.01
3196 10943 2.233676 CCAGCCCACCAAGGTTTAATTC 59.766 50.000 0.00 0.00 34.66 2.17
3197 10944 2.256306 CCAGCCCACCAAGGTTTAATT 58.744 47.619 0.00 0.00 34.66 1.40
3198 10945 1.149077 ACCAGCCCACCAAGGTTTAAT 59.851 47.619 0.00 0.00 34.66 1.40
3199 10946 0.558712 ACCAGCCCACCAAGGTTTAA 59.441 50.000 0.00 0.00 34.66 1.52
3200 10947 0.558712 AACCAGCCCACCAAGGTTTA 59.441 50.000 0.00 0.00 41.33 2.01
3201 10948 0.759060 GAACCAGCCCACCAAGGTTT 60.759 55.000 0.00 0.00 43.94 3.27
3202 10949 1.152546 GAACCAGCCCACCAAGGTT 60.153 57.895 0.00 0.00 46.39 3.50
3203 10950 2.520968 GAACCAGCCCACCAAGGT 59.479 61.111 0.00 0.00 35.47 3.50
3204 10951 2.283173 GGAACCAGCCCACCAAGG 60.283 66.667 0.00 0.00 37.03 3.61
3205 10952 1.903404 GTGGAACCAGCCCACCAAG 60.903 63.158 0.00 0.00 46.30 3.61
3206 10953 2.197324 GTGGAACCAGCCCACCAA 59.803 61.111 0.00 0.00 46.30 3.67
3218 10965 4.991776 TGATTATGTTCCTTGTGGTGGAA 58.008 39.130 0.00 0.00 40.85 3.53
3219 10966 4.649267 TGATTATGTTCCTTGTGGTGGA 57.351 40.909 0.00 0.00 34.23 4.02
3220 10967 4.339247 GGATGATTATGTTCCTTGTGGTGG 59.661 45.833 0.00 0.00 34.23 4.61
3221 10968 5.195940 AGGATGATTATGTTCCTTGTGGTG 58.804 41.667 0.00 0.00 36.46 4.17
3222 10969 5.456921 AGGATGATTATGTTCCTTGTGGT 57.543 39.130 0.00 0.00 36.46 4.16
3223 10970 5.471456 GCTAGGATGATTATGTTCCTTGTGG 59.529 44.000 0.00 0.00 40.37 4.17
3224 10971 6.204301 CAGCTAGGATGATTATGTTCCTTGTG 59.796 42.308 0.00 0.00 40.37 3.33
3225 10972 6.294473 CAGCTAGGATGATTATGTTCCTTGT 58.706 40.000 0.00 0.00 40.37 3.16
3226 10973 5.180868 GCAGCTAGGATGATTATGTTCCTTG 59.819 44.000 0.00 0.00 40.37 3.61
3227 10974 5.072872 AGCAGCTAGGATGATTATGTTCCTT 59.927 40.000 0.00 0.00 40.37 3.36
3228 10975 4.596643 AGCAGCTAGGATGATTATGTTCCT 59.403 41.667 0.00 0.00 42.49 3.36
3229 10976 4.904241 AGCAGCTAGGATGATTATGTTCC 58.096 43.478 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.