Multiple sequence alignment - TraesCS2D01G309200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G309200 | chr2D | 100.000 | 3575 | 0 | 0 | 1 | 3575 | 396659448 | 396663022 | 0.000000e+00 | 6602.0 |
1 | TraesCS2D01G309200 | chr2D | 98.773 | 652 | 5 | 3 | 1 | 650 | 488465729 | 488465079 | 0.000000e+00 | 1157.0 |
2 | TraesCS2D01G309200 | chr2D | 97.856 | 653 | 11 | 3 | 1 | 650 | 35045898 | 35046550 | 0.000000e+00 | 1125.0 |
3 | TraesCS2D01G309200 | chr2D | 97.713 | 656 | 7 | 7 | 1 | 651 | 10444276 | 10444928 | 0.000000e+00 | 1122.0 |
4 | TraesCS2D01G309200 | chr2A | 90.340 | 2909 | 106 | 40 | 650 | 3499 | 534623464 | 534626256 | 0.000000e+00 | 3653.0 |
5 | TraesCS2D01G309200 | chr2B | 88.392 | 2214 | 157 | 53 | 707 | 2874 | 470057427 | 470059586 | 0.000000e+00 | 2573.0 |
6 | TraesCS2D01G309200 | chr2B | 90.000 | 580 | 20 | 18 | 2921 | 3499 | 470059684 | 470060226 | 0.000000e+00 | 715.0 |
7 | TraesCS2D01G309200 | chr7D | 98.165 | 654 | 8 | 4 | 1 | 651 | 129811920 | 129811268 | 0.000000e+00 | 1138.0 |
8 | TraesCS2D01G309200 | chr7D | 97.859 | 654 | 11 | 3 | 1 | 651 | 72516510 | 72517163 | 0.000000e+00 | 1127.0 |
9 | TraesCS2D01G309200 | chr1D | 98.162 | 653 | 8 | 4 | 1 | 650 | 416603058 | 416602407 | 0.000000e+00 | 1136.0 |
10 | TraesCS2D01G309200 | chr6D | 97.859 | 654 | 10 | 4 | 1 | 650 | 429959994 | 429960647 | 0.000000e+00 | 1127.0 |
11 | TraesCS2D01G309200 | chr6D | 97.706 | 654 | 11 | 4 | 1 | 651 | 26596807 | 26597459 | 0.000000e+00 | 1122.0 |
12 | TraesCS2D01G309200 | chr3D | 97.710 | 655 | 8 | 6 | 1 | 650 | 236679722 | 236680374 | 0.000000e+00 | 1120.0 |
13 | TraesCS2D01G309200 | chr6B | 97.500 | 40 | 1 | 0 | 2334 | 2373 | 353181440 | 353181479 | 6.400000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G309200 | chr2D | 396659448 | 396663022 | 3574 | False | 6602 | 6602 | 100.000 | 1 | 3575 | 1 | chr2D.!!$F3 | 3574 |
1 | TraesCS2D01G309200 | chr2D | 488465079 | 488465729 | 650 | True | 1157 | 1157 | 98.773 | 1 | 650 | 1 | chr2D.!!$R1 | 649 |
2 | TraesCS2D01G309200 | chr2D | 35045898 | 35046550 | 652 | False | 1125 | 1125 | 97.856 | 1 | 650 | 1 | chr2D.!!$F2 | 649 |
3 | TraesCS2D01G309200 | chr2D | 10444276 | 10444928 | 652 | False | 1122 | 1122 | 97.713 | 1 | 651 | 1 | chr2D.!!$F1 | 650 |
4 | TraesCS2D01G309200 | chr2A | 534623464 | 534626256 | 2792 | False | 3653 | 3653 | 90.340 | 650 | 3499 | 1 | chr2A.!!$F1 | 2849 |
5 | TraesCS2D01G309200 | chr2B | 470057427 | 470060226 | 2799 | False | 1644 | 2573 | 89.196 | 707 | 3499 | 2 | chr2B.!!$F1 | 2792 |
6 | TraesCS2D01G309200 | chr7D | 129811268 | 129811920 | 652 | True | 1138 | 1138 | 98.165 | 1 | 651 | 1 | chr7D.!!$R1 | 650 |
7 | TraesCS2D01G309200 | chr7D | 72516510 | 72517163 | 653 | False | 1127 | 1127 | 97.859 | 1 | 651 | 1 | chr7D.!!$F1 | 650 |
8 | TraesCS2D01G309200 | chr1D | 416602407 | 416603058 | 651 | True | 1136 | 1136 | 98.162 | 1 | 650 | 1 | chr1D.!!$R1 | 649 |
9 | TraesCS2D01G309200 | chr6D | 429959994 | 429960647 | 653 | False | 1127 | 1127 | 97.859 | 1 | 650 | 1 | chr6D.!!$F2 | 649 |
10 | TraesCS2D01G309200 | chr6D | 26596807 | 26597459 | 652 | False | 1122 | 1122 | 97.706 | 1 | 651 | 1 | chr6D.!!$F1 | 650 |
11 | TraesCS2D01G309200 | chr3D | 236679722 | 236680374 | 652 | False | 1120 | 1120 | 97.710 | 1 | 650 | 1 | chr3D.!!$F1 | 649 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
699 | 707 | 0.179129 | GCCCGTGATGGATGCTTTTG | 60.179 | 55.0 | 0.0 | 0.0 | 42.0 | 2.44 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2589 | 2690 | 0.106894 | GGATGCTTTACCCTCCCTCG | 59.893 | 60.0 | 0.0 | 0.0 | 0.0 | 4.63 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
152 | 154 | 3.113322 | TCGTCGCTAAAATCTCAATCCG | 58.887 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
219 | 221 | 5.640158 | TTTCCCTTGAGTGAGTTTTCCTA | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 2.94 |
580 | 588 | 6.588756 | TCACTTTTACTTTCGCATACTTCGAT | 59.411 | 34.615 | 0.00 | 0.00 | 35.75 | 3.59 |
658 | 666 | 1.301716 | TTGCGGAACAGGTCTGAGC | 60.302 | 57.895 | 0.00 | 0.00 | 34.07 | 4.26 |
698 | 706 | 1.656818 | CGCCCGTGATGGATGCTTTT | 61.657 | 55.000 | 0.00 | 0.00 | 42.00 | 2.27 |
699 | 707 | 0.179129 | GCCCGTGATGGATGCTTTTG | 60.179 | 55.000 | 0.00 | 0.00 | 42.00 | 2.44 |
700 | 708 | 1.176527 | CCCGTGATGGATGCTTTTGT | 58.823 | 50.000 | 0.00 | 0.00 | 42.00 | 2.83 |
701 | 709 | 1.133025 | CCCGTGATGGATGCTTTTGTC | 59.867 | 52.381 | 0.00 | 0.00 | 42.00 | 3.18 |
702 | 710 | 1.811965 | CCGTGATGGATGCTTTTGTCA | 59.188 | 47.619 | 0.00 | 0.00 | 42.00 | 3.58 |
703 | 711 | 2.424601 | CCGTGATGGATGCTTTTGTCAT | 59.575 | 45.455 | 0.00 | 0.00 | 42.00 | 3.06 |
704 | 712 | 3.488047 | CCGTGATGGATGCTTTTGTCATC | 60.488 | 47.826 | 0.00 | 0.00 | 42.00 | 2.92 |
705 | 713 | 3.127376 | CGTGATGGATGCTTTTGTCATCA | 59.873 | 43.478 | 0.00 | 0.00 | 41.46 | 3.07 |
763 | 771 | 1.077930 | CAGGGTCATGTGCAGGGAG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
764 | 772 | 2.273449 | GGGTCATGTGCAGGGAGG | 59.727 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
765 | 773 | 2.273449 | GGTCATGTGCAGGGAGGG | 59.727 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
766 | 774 | 2.273449 | GTCATGTGCAGGGAGGGG | 59.727 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
767 | 775 | 2.124768 | TCATGTGCAGGGAGGGGA | 59.875 | 61.111 | 0.00 | 0.00 | 0.00 | 4.81 |
768 | 776 | 1.997311 | TCATGTGCAGGGAGGGGAG | 60.997 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
860 | 872 | 1.081892 | CTGGGAGATCAGTTTGCACG | 58.918 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
895 | 907 | 6.181190 | AGAGTTATAACCTTTTTCTGCCCTC | 58.819 | 40.000 | 12.05 | 0.00 | 0.00 | 4.30 |
905 | 917 | 1.608717 | TTCTGCCCTCGAGAAGCCTC | 61.609 | 60.000 | 15.71 | 0.00 | 36.08 | 4.70 |
906 | 918 | 2.038007 | TGCCCTCGAGAAGCCTCT | 59.962 | 61.111 | 15.71 | 0.00 | 37.28 | 3.69 |
907 | 919 | 2.015227 | CTGCCCTCGAGAAGCCTCTC | 62.015 | 65.000 | 15.71 | 1.92 | 44.17 | 3.20 |
908 | 920 | 2.791868 | GCCCTCGAGAAGCCTCTCC | 61.792 | 68.421 | 15.71 | 0.00 | 44.70 | 3.71 |
952 | 964 | 2.102252 | GCCAAATCTCTCCGTCTCTGAT | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
967 | 979 | 1.002366 | CTGATTTCCTGCTCCGTTCG | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
969 | 981 | 1.000145 | GATTTCCTGCTCCGTTCGTC | 59.000 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1029 | 1048 | 0.680061 | AGTTGTGAGTTCCTCCCGTC | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1100 | 1119 | 1.675801 | CCTGGCTGTTCTGCTCTGA | 59.324 | 57.895 | 2.15 | 0.00 | 0.00 | 3.27 |
1101 | 1120 | 0.673022 | CCTGGCTGTTCTGCTCTGAC | 60.673 | 60.000 | 2.15 | 0.00 | 0.00 | 3.51 |
1103 | 1122 | 2.386660 | GGCTGTTCTGCTCTGACGC | 61.387 | 63.158 | 2.15 | 0.00 | 0.00 | 5.19 |
1104 | 1123 | 2.724708 | GCTGTTCTGCTCTGACGCG | 61.725 | 63.158 | 3.53 | 3.53 | 0.00 | 6.01 |
1116 | 1135 | 2.126734 | GACGCGCTGCAAAATGCT | 60.127 | 55.556 | 5.73 | 0.00 | 45.31 | 3.79 |
1234 | 1253 | 6.370994 | TCTCCGTGAGTTTCTTACTACTACTG | 59.629 | 42.308 | 1.60 | 0.00 | 37.17 | 2.74 |
1273 | 1299 | 3.156714 | TGGACTGACCAATGGCGT | 58.843 | 55.556 | 0.00 | 0.00 | 46.75 | 5.68 |
1278 | 1304 | 0.324614 | ACTGACCAATGGCGTCATCA | 59.675 | 50.000 | 1.37 | 0.00 | 39.43 | 3.07 |
1338 | 1364 | 9.533253 | TGATTTTCTTGTGATTTTTCTTCTTCC | 57.467 | 29.630 | 0.00 | 0.00 | 0.00 | 3.46 |
1412 | 1438 | 1.260538 | TGAGTGGCTTCTCCTCGCAT | 61.261 | 55.000 | 7.54 | 0.00 | 34.08 | 4.73 |
1443 | 1473 | 5.105756 | TGTGTTCTTGATGATTCTCTCGCTA | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1447 | 1477 | 5.586339 | TCTTGATGATTCTCTCGCTAGTTG | 58.414 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1459 | 1505 | 4.113354 | CTCGCTAGTTGTTTCCATCCTAC | 58.887 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1462 | 1508 | 3.864003 | GCTAGTTGTTTCCATCCTACGTC | 59.136 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
1465 | 1511 | 2.380084 | TGTTTCCATCCTACGTCTGC | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1498 | 1544 | 3.604582 | TCCATTGATTGATGCACGTGTA | 58.395 | 40.909 | 18.38 | 14.09 | 0.00 | 2.90 |
1568 | 1614 | 7.715249 | TGCAGATTGTAAGTGATTAATCCCTAC | 59.285 | 37.037 | 12.90 | 11.08 | 31.56 | 3.18 |
1591 | 1637 | 4.526970 | TCTTCTTCACAAGTTTGCCTCTT | 58.473 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
1617 | 1667 | 5.543714 | TCAAAGTTTGCTATCACGTAAGGA | 58.456 | 37.500 | 10.90 | 0.00 | 46.39 | 3.36 |
1618 | 1668 | 5.637810 | TCAAAGTTTGCTATCACGTAAGGAG | 59.362 | 40.000 | 10.90 | 0.00 | 46.39 | 3.69 |
1619 | 1669 | 4.124851 | AGTTTGCTATCACGTAAGGAGG | 57.875 | 45.455 | 0.00 | 0.00 | 46.39 | 4.30 |
1620 | 1670 | 2.596904 | TTGCTATCACGTAAGGAGGC | 57.403 | 50.000 | 0.00 | 0.00 | 46.39 | 4.70 |
1621 | 1671 | 1.480789 | TGCTATCACGTAAGGAGGCA | 58.519 | 50.000 | 0.00 | 0.00 | 46.39 | 4.75 |
1622 | 1672 | 1.828595 | TGCTATCACGTAAGGAGGCAA | 59.171 | 47.619 | 0.00 | 0.00 | 46.39 | 4.52 |
1623 | 1673 | 2.235155 | TGCTATCACGTAAGGAGGCAAA | 59.765 | 45.455 | 0.00 | 0.00 | 46.39 | 3.68 |
1624 | 1674 | 2.608090 | GCTATCACGTAAGGAGGCAAAC | 59.392 | 50.000 | 0.00 | 0.00 | 46.39 | 2.93 |
1656 | 1727 | 8.685427 | TGTATTGGAAATGAACTGATTACCATG | 58.315 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
1660 | 1731 | 8.365060 | TGGAAATGAACTGATTACCATGAAAT | 57.635 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
1682 | 1753 | 5.375417 | TTCCTGCATCACAAACATACAAG | 57.625 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
1748 | 1819 | 3.805971 | TGTAATGCTCGCAATCTCATCTG | 59.194 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
1862 | 1934 | 4.614764 | CGGGATCATCGTAAGTCTCATCTG | 60.615 | 50.000 | 0.00 | 0.00 | 39.48 | 2.90 |
1930 | 2010 | 2.535331 | TCAGCAAACTTTTGGTTTCGC | 58.465 | 42.857 | 3.67 | 0.00 | 45.64 | 4.70 |
2014 | 2094 | 0.248134 | GCGAGATCGACAAGTACGCT | 60.248 | 55.000 | 6.39 | 0.00 | 43.02 | 5.07 |
2107 | 2187 | 0.317160 | TAGCACAGGTCACAGTTCCG | 59.683 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2124 | 2204 | 3.149005 | TCCGACTACCCTTTTGCATTT | 57.851 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2126 | 2206 | 2.094752 | CCGACTACCCTTTTGCATTTGG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2166 | 2249 | 6.660800 | ACTAGGCTCTGTCTGTATACTTGTA | 58.339 | 40.000 | 4.17 | 0.00 | 0.00 | 2.41 |
2214 | 2297 | 6.657117 | TGTGGAAAATGAATCAATTCCTCGTA | 59.343 | 34.615 | 22.97 | 8.10 | 41.51 | 3.43 |
2217 | 2300 | 6.638468 | GGAAAATGAATCAATTCCTCGTATGC | 59.362 | 38.462 | 18.31 | 0.00 | 38.61 | 3.14 |
2218 | 2301 | 6.949352 | AAATGAATCAATTCCTCGTATGCT | 57.051 | 33.333 | 0.48 | 0.00 | 35.97 | 3.79 |
2223 | 2306 | 4.406648 | TCAATTCCTCGTATGCTGATGT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
2331 | 2432 | 5.181748 | AGTGCTAAAGAGTCCATCAATGTC | 58.818 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2344 | 2445 | 2.699954 | TCAATGTCGAAGAGGCCTTTC | 58.300 | 47.619 | 6.77 | 11.90 | 36.95 | 2.62 |
2533 | 2634 | 1.203038 | TGAAAGGCCAGCCAATTCAGA | 60.203 | 47.619 | 19.84 | 5.06 | 38.43 | 3.27 |
2578 | 2679 | 1.875514 | GCTGCTGTTCAACATGACTCA | 59.124 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2589 | 2690 | 3.791973 | ACATGACTCAAGATCGGACTC | 57.208 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
2835 | 2936 | 1.802960 | CAGCACAGCAACCAGAGTTAG | 59.197 | 52.381 | 0.00 | 0.00 | 33.27 | 2.34 |
2841 | 2942 | 4.067896 | ACAGCAACCAGAGTTAGAACATG | 58.932 | 43.478 | 0.00 | 0.00 | 33.27 | 3.21 |
2904 | 3005 | 9.979578 | AAGACAGTGAATTTACATATGCAAAAA | 57.020 | 25.926 | 5.22 | 3.52 | 0.00 | 1.94 |
2918 | 3019 | 9.008965 | ACATATGCAAAAACTTGTACAGATACA | 57.991 | 29.630 | 1.58 | 0.00 | 39.63 | 2.29 |
3079 | 3253 | 2.100916 | ACTTGGATAGGTCGGTCATTCG | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3118 | 3292 | 0.325296 | TCGATGGTTAGCTGGAGGGT | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3119 | 3293 | 0.179073 | CGATGGTTAGCTGGAGGGTG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3184 | 3358 | 7.946207 | TGAAAGAGGATGAGTCTACATATGAC | 58.054 | 38.462 | 10.38 | 0.00 | 34.88 | 3.06 |
3187 | 3361 | 8.489676 | AAGAGGATGAGTCTACATATGACAAT | 57.510 | 34.615 | 10.38 | 0.00 | 36.94 | 2.71 |
3188 | 3362 | 8.121305 | AGAGGATGAGTCTACATATGACAATC | 57.879 | 38.462 | 10.38 | 5.23 | 36.94 | 2.67 |
3189 | 3363 | 7.949565 | AGAGGATGAGTCTACATATGACAATCT | 59.050 | 37.037 | 10.38 | 1.16 | 36.94 | 2.40 |
3190 | 3364 | 7.894708 | AGGATGAGTCTACATATGACAATCTG | 58.105 | 38.462 | 10.38 | 0.00 | 36.94 | 2.90 |
3191 | 3365 | 7.727634 | AGGATGAGTCTACATATGACAATCTGA | 59.272 | 37.037 | 10.38 | 0.00 | 36.94 | 3.27 |
3192 | 3366 | 8.363390 | GGATGAGTCTACATATGACAATCTGAA | 58.637 | 37.037 | 10.38 | 0.00 | 36.94 | 3.02 |
3193 | 3367 | 9.755804 | GATGAGTCTACATATGACAATCTGAAA | 57.244 | 33.333 | 10.38 | 0.00 | 36.94 | 2.69 |
3194 | 3368 | 9.761504 | ATGAGTCTACATATGACAATCTGAAAG | 57.238 | 33.333 | 10.38 | 0.00 | 36.94 | 2.62 |
3195 | 3369 | 8.971073 | TGAGTCTACATATGACAATCTGAAAGA | 58.029 | 33.333 | 10.38 | 0.00 | 41.45 | 2.52 |
3196 | 3370 | 9.462174 | GAGTCTACATATGACAATCTGAAAGAG | 57.538 | 37.037 | 10.38 | 0.00 | 40.90 | 2.85 |
3197 | 3371 | 8.420222 | AGTCTACATATGACAATCTGAAAGAGG | 58.580 | 37.037 | 10.38 | 0.00 | 40.90 | 3.69 |
3198 | 3372 | 8.417106 | GTCTACATATGACAATCTGAAAGAGGA | 58.583 | 37.037 | 10.38 | 0.00 | 39.33 | 3.71 |
3212 | 3386 | 8.175925 | TCTGAAAGAGGATGAGTCTACATATG | 57.824 | 38.462 | 0.00 | 0.00 | 38.67 | 1.78 |
3213 | 3387 | 8.001292 | TCTGAAAGAGGATGAGTCTACATATGA | 58.999 | 37.037 | 10.38 | 0.00 | 38.67 | 2.15 |
3214 | 3388 | 8.539117 | TGAAAGAGGATGAGTCTACATATGAA | 57.461 | 34.615 | 10.38 | 0.00 | 0.00 | 2.57 |
3215 | 3389 | 8.981659 | TGAAAGAGGATGAGTCTACATATGAAA | 58.018 | 33.333 | 10.38 | 0.00 | 0.00 | 2.69 |
3479 | 3653 | 8.749026 | ATTATCTGCAGAAACAAGATCAAGAT | 57.251 | 30.769 | 22.50 | 0.81 | 0.00 | 2.40 |
3508 | 3682 | 8.940768 | AAAAATAATGTTGGTCAATTATCCGG | 57.059 | 30.769 | 0.00 | 0.00 | 0.00 | 5.14 |
3509 | 3683 | 7.889873 | AAATAATGTTGGTCAATTATCCGGA | 57.110 | 32.000 | 6.61 | 6.61 | 0.00 | 5.14 |
3510 | 3684 | 7.889873 | AATAATGTTGGTCAATTATCCGGAA | 57.110 | 32.000 | 9.01 | 0.00 | 0.00 | 4.30 |
3511 | 3685 | 7.889873 | ATAATGTTGGTCAATTATCCGGAAA | 57.110 | 32.000 | 9.01 | 4.74 | 0.00 | 3.13 |
3512 | 3686 | 6.790232 | AATGTTGGTCAATTATCCGGAAAT | 57.210 | 33.333 | 9.01 | 7.15 | 0.00 | 2.17 |
3513 | 3687 | 7.889873 | AATGTTGGTCAATTATCCGGAAATA | 57.110 | 32.000 | 9.01 | 0.00 | 0.00 | 1.40 |
3514 | 3688 | 8.477419 | AATGTTGGTCAATTATCCGGAAATAT | 57.523 | 30.769 | 9.01 | 0.00 | 0.00 | 1.28 |
3515 | 3689 | 7.270757 | TGTTGGTCAATTATCCGGAAATATG | 57.729 | 36.000 | 9.01 | 6.27 | 0.00 | 1.78 |
3516 | 3690 | 6.831353 | TGTTGGTCAATTATCCGGAAATATGT | 59.169 | 34.615 | 9.01 | 0.00 | 0.00 | 2.29 |
3517 | 3691 | 7.993758 | TGTTGGTCAATTATCCGGAAATATGTA | 59.006 | 33.333 | 9.01 | 0.00 | 0.00 | 2.29 |
3518 | 3692 | 8.504005 | GTTGGTCAATTATCCGGAAATATGTAG | 58.496 | 37.037 | 9.01 | 0.00 | 0.00 | 2.74 |
3519 | 3693 | 7.165485 | TGGTCAATTATCCGGAAATATGTAGG | 58.835 | 38.462 | 9.01 | 0.00 | 0.00 | 3.18 |
3520 | 3694 | 6.093633 | GGTCAATTATCCGGAAATATGTAGGC | 59.906 | 42.308 | 9.01 | 0.00 | 0.00 | 3.93 |
3521 | 3695 | 6.093633 | GTCAATTATCCGGAAATATGTAGGCC | 59.906 | 42.308 | 9.01 | 0.00 | 0.00 | 5.19 |
3522 | 3696 | 4.563140 | TTATCCGGAAATATGTAGGCCC | 57.437 | 45.455 | 9.01 | 0.00 | 0.00 | 5.80 |
3523 | 3697 | 1.809133 | TCCGGAAATATGTAGGCCCA | 58.191 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3524 | 3698 | 2.344592 | TCCGGAAATATGTAGGCCCAT | 58.655 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3525 | 3699 | 2.714250 | TCCGGAAATATGTAGGCCCATT | 59.286 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3526 | 3700 | 2.819608 | CCGGAAATATGTAGGCCCATTG | 59.180 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3527 | 3701 | 3.486383 | CGGAAATATGTAGGCCCATTGT | 58.514 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
3528 | 3702 | 3.888930 | CGGAAATATGTAGGCCCATTGTT | 59.111 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3529 | 3703 | 5.067273 | CGGAAATATGTAGGCCCATTGTTA | 58.933 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
3530 | 3704 | 5.710099 | CGGAAATATGTAGGCCCATTGTTAT | 59.290 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
3531 | 3705 | 6.882140 | CGGAAATATGTAGGCCCATTGTTATA | 59.118 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
3532 | 3706 | 7.392113 | CGGAAATATGTAGGCCCATTGTTATAA | 59.608 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3533 | 3707 | 9.084533 | GGAAATATGTAGGCCCATTGTTATAAA | 57.915 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3561 | 3735 | 6.731292 | AAAAGACTGGCAATAAGGTTTTCT | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3562 | 3736 | 7.833285 | AAAAGACTGGCAATAAGGTTTTCTA | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3563 | 3737 | 6.819397 | AAGACTGGCAATAAGGTTTTCTAC | 57.181 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
3564 | 3738 | 6.128138 | AGACTGGCAATAAGGTTTTCTACT | 57.872 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3565 | 3739 | 7.253905 | AGACTGGCAATAAGGTTTTCTACTA | 57.746 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3566 | 3740 | 7.104290 | AGACTGGCAATAAGGTTTTCTACTAC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
3567 | 3741 | 7.017319 | ACTGGCAATAAGGTTTTCTACTACT | 57.983 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3568 | 3742 | 7.104290 | ACTGGCAATAAGGTTTTCTACTACTC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3569 | 3743 | 6.412214 | TGGCAATAAGGTTTTCTACTACTCC | 58.588 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3570 | 3744 | 6.214819 | TGGCAATAAGGTTTTCTACTACTCCT | 59.785 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
3571 | 3745 | 7.400915 | TGGCAATAAGGTTTTCTACTACTCCTA | 59.599 | 37.037 | 0.00 | 0.00 | 0.00 | 2.94 |
3572 | 3746 | 8.430431 | GGCAATAAGGTTTTCTACTACTCCTAT | 58.570 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3573 | 3747 | 9.262358 | GCAATAAGGTTTTCTACTACTCCTATG | 57.738 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
3574 | 3748 | 9.765795 | CAATAAGGTTTTCTACTACTCCTATGG | 57.234 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
152 | 154 | 5.250235 | TCAAGTTGAGTACTCGATCATCC | 57.750 | 43.478 | 15.96 | 3.06 | 35.54 | 3.51 |
219 | 221 | 5.124776 | TCAAAAACCTCGTGTGAGAAACATT | 59.875 | 36.000 | 0.00 | 0.00 | 45.57 | 2.71 |
658 | 666 | 2.353376 | CGCGTGCCTTTGTTGGTG | 60.353 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
698 | 706 | 8.434392 | TCTTTAGGATTCATGATGATGATGACA | 58.566 | 33.333 | 0.00 | 0.00 | 38.43 | 3.58 |
699 | 707 | 8.843885 | TCTTTAGGATTCATGATGATGATGAC | 57.156 | 34.615 | 0.00 | 0.00 | 38.43 | 3.06 |
700 | 708 | 9.856162 | TTTCTTTAGGATTCATGATGATGATGA | 57.144 | 29.630 | 0.00 | 0.00 | 38.43 | 2.92 |
702 | 710 | 9.298250 | CCTTTCTTTAGGATTCATGATGATGAT | 57.702 | 33.333 | 0.00 | 0.00 | 36.62 | 2.45 |
703 | 711 | 7.722728 | CCCTTTCTTTAGGATTCATGATGATGA | 59.277 | 37.037 | 0.00 | 0.00 | 37.50 | 2.92 |
704 | 712 | 7.039923 | CCCCTTTCTTTAGGATTCATGATGATG | 60.040 | 40.741 | 0.00 | 0.00 | 37.50 | 3.07 |
705 | 713 | 7.008941 | CCCCTTTCTTTAGGATTCATGATGAT | 58.991 | 38.462 | 0.00 | 0.00 | 37.50 | 2.45 |
763 | 771 | 3.412408 | GGAACTGCTCCCCTCCCC | 61.412 | 72.222 | 0.00 | 0.00 | 38.44 | 4.81 |
764 | 772 | 2.610859 | TGGAACTGCTCCCCTCCC | 60.611 | 66.667 | 0.00 | 0.00 | 44.69 | 4.30 |
765 | 773 | 2.671682 | GTGGAACTGCTCCCCTCC | 59.328 | 66.667 | 0.00 | 0.00 | 44.69 | 4.30 |
766 | 774 | 2.266055 | CGTGGAACTGCTCCCCTC | 59.734 | 66.667 | 0.00 | 0.00 | 44.69 | 4.30 |
767 | 775 | 2.526873 | ACGTGGAACTGCTCCCCT | 60.527 | 61.111 | 0.00 | 0.00 | 44.69 | 4.79 |
768 | 776 | 2.047179 | GACGTGGAACTGCTCCCC | 60.047 | 66.667 | 0.00 | 0.00 | 44.69 | 4.81 |
833 | 845 | 2.540383 | ACTGATCTCCCAGTGCACTTA | 58.460 | 47.619 | 18.94 | 4.80 | 44.93 | 2.24 |
842 | 854 | 0.684535 | TCGTGCAAACTGATCTCCCA | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
860 | 872 | 6.702716 | AGGTTATAACTCTAGAGTGCACTC | 57.297 | 41.667 | 34.82 | 34.82 | 41.58 | 3.51 |
870 | 882 | 7.266905 | AGGGCAGAAAAAGGTTATAACTCTA | 57.733 | 36.000 | 15.05 | 0.00 | 0.00 | 2.43 |
905 | 917 | 1.408969 | GCTAGAGGTGGAGAAGGGAG | 58.591 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
906 | 918 | 0.032017 | GGCTAGAGGTGGAGAAGGGA | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
907 | 919 | 1.051556 | GGGCTAGAGGTGGAGAAGGG | 61.052 | 65.000 | 0.00 | 0.00 | 0.00 | 3.95 |
908 | 920 | 0.325671 | TGGGCTAGAGGTGGAGAAGG | 60.326 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
952 | 964 | 1.372499 | CGACGAACGGAGCAGGAAA | 60.372 | 57.895 | 0.00 | 0.00 | 38.46 | 3.13 |
967 | 979 | 1.346722 | TCCCCAAAGGAAGAAGACGAC | 59.653 | 52.381 | 0.00 | 0.00 | 43.78 | 4.34 |
969 | 981 | 1.339151 | CCTCCCCAAAGGAAGAAGACG | 60.339 | 57.143 | 0.00 | 0.00 | 46.94 | 4.18 |
1029 | 1048 | 1.369625 | AACCAGGCGCGAAAATAGAG | 58.630 | 50.000 | 12.10 | 0.00 | 0.00 | 2.43 |
1101 | 1120 | 3.834373 | GCAGCATTTTGCAGCGCG | 61.834 | 61.111 | 0.00 | 0.00 | 45.45 | 6.86 |
1108 | 1127 | 2.555325 | TCAGGACAAGAGCAGCATTTTG | 59.445 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1116 | 1135 | 1.483595 | CCCAGGTCAGGACAAGAGCA | 61.484 | 60.000 | 1.41 | 0.00 | 36.03 | 4.26 |
1234 | 1253 | 1.607467 | ACCCACATTGCCAAGGAGC | 60.607 | 57.895 | 0.00 | 0.00 | 0.00 | 4.70 |
1273 | 1299 | 5.188359 | TGTGTGATCTTGAGAAGGATGATGA | 59.812 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1278 | 1304 | 6.996879 | CCATTATGTGTGATCTTGAGAAGGAT | 59.003 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
1338 | 1364 | 2.543861 | CCACATACGAATCGTCCTGGAG | 60.544 | 54.545 | 13.00 | 8.45 | 41.54 | 3.86 |
1412 | 1438 | 2.574450 | TCATCAAGAACACAGCTGCAA | 58.426 | 42.857 | 15.27 | 0.00 | 0.00 | 4.08 |
1447 | 1477 | 2.674796 | AGCAGACGTAGGATGGAAAC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1459 | 1505 | 2.165234 | TGGATCAGAGAAGAAGCAGACG | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1462 | 1508 | 4.767478 | TCAATGGATCAGAGAAGAAGCAG | 58.233 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
1465 | 1511 | 7.520776 | GCATCAATCAATGGATCAGAGAAGAAG | 60.521 | 40.741 | 0.00 | 0.00 | 31.88 | 2.85 |
1498 | 1544 | 1.272490 | TCGAGAGTGCGGATTTTCTGT | 59.728 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1568 | 1614 | 4.133078 | AGAGGCAAACTTGTGAAGAAGAG | 58.867 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
1591 | 1637 | 6.147164 | CCTTACGTGATAGCAAACTTTGAAGA | 59.853 | 38.462 | 5.65 | 0.00 | 0.00 | 2.87 |
1617 | 1667 | 5.606348 | TTCCAATACACAAAAGTTTGCCT | 57.394 | 34.783 | 3.68 | 0.00 | 41.79 | 4.75 |
1618 | 1668 | 6.481644 | TCATTTCCAATACACAAAAGTTTGCC | 59.518 | 34.615 | 3.68 | 0.00 | 41.79 | 4.52 |
1619 | 1669 | 7.475771 | TCATTTCCAATACACAAAAGTTTGC | 57.524 | 32.000 | 3.68 | 0.00 | 41.79 | 3.68 |
1620 | 1670 | 9.097257 | AGTTCATTTCCAATACACAAAAGTTTG | 57.903 | 29.630 | 2.22 | 2.22 | 43.62 | 2.93 |
1621 | 1671 | 9.097257 | CAGTTCATTTCCAATACACAAAAGTTT | 57.903 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
1622 | 1672 | 8.474025 | TCAGTTCATTTCCAATACACAAAAGTT | 58.526 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
1623 | 1673 | 8.006298 | TCAGTTCATTTCCAATACACAAAAGT | 57.994 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
1624 | 1674 | 9.480053 | AATCAGTTCATTTCCAATACACAAAAG | 57.520 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
1651 | 1721 | 3.433343 | TGTGATGCAGGAATTTCATGGT | 58.567 | 40.909 | 12.51 | 0.00 | 0.00 | 3.55 |
1656 | 1727 | 6.389091 | TGTATGTTTGTGATGCAGGAATTTC | 58.611 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1660 | 1731 | 4.321156 | GCTTGTATGTTTGTGATGCAGGAA | 60.321 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1726 | 1797 | 3.805971 | CAGATGAGATTGCGAGCATTACA | 59.194 | 43.478 | 0.00 | 0.94 | 0.00 | 2.41 |
1748 | 1819 | 8.552034 | GTTGTAAATGCAAGAGGTACTGATATC | 58.448 | 37.037 | 0.00 | 0.00 | 41.55 | 1.63 |
1791 | 1863 | 2.035442 | GGTTCTGAACCGCTCCTGC | 61.035 | 63.158 | 22.67 | 0.00 | 42.62 | 4.85 |
1862 | 1934 | 3.512033 | TGTTGTTGTTTACAGTTGGGC | 57.488 | 42.857 | 0.00 | 0.00 | 38.19 | 5.36 |
2014 | 2094 | 1.827315 | GCTTGCGCACACTGTCGTTA | 61.827 | 55.000 | 11.12 | 0.00 | 35.78 | 3.18 |
2107 | 2187 | 3.161866 | TCCCAAATGCAAAAGGGTAGTC | 58.838 | 45.455 | 17.24 | 0.00 | 42.12 | 2.59 |
2124 | 2204 | 5.304614 | GCCTAGTTTATGAGTCAGTATCCCA | 59.695 | 44.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2126 | 2206 | 6.492087 | AGAGCCTAGTTTATGAGTCAGTATCC | 59.508 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2166 | 2249 | 1.736645 | CACGACGAATTCCCGTGCT | 60.737 | 57.895 | 25.04 | 3.82 | 45.26 | 4.40 |
2214 | 2297 | 8.089597 | TCAACAAAACAATATCAACATCAGCAT | 58.910 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
2217 | 2300 | 7.811236 | AGCTCAACAAAACAATATCAACATCAG | 59.189 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2218 | 2301 | 7.660112 | AGCTCAACAAAACAATATCAACATCA | 58.340 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
2223 | 2306 | 9.421806 | CCATTTAGCTCAACAAAACAATATCAA | 57.578 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2271 | 2372 | 5.730207 | AGGAATACCCATCTCATCAGCATAT | 59.270 | 40.000 | 0.00 | 0.00 | 37.41 | 1.78 |
2533 | 2634 | 1.105167 | TTCTGCTTGTGCTGCTGCTT | 61.105 | 50.000 | 17.00 | 0.00 | 40.48 | 3.91 |
2578 | 2679 | 0.466555 | CCTCCCTCGAGTCCGATCTT | 60.467 | 60.000 | 12.31 | 0.00 | 44.62 | 2.40 |
2589 | 2690 | 0.106894 | GGATGCTTTACCCTCCCTCG | 59.893 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2591 | 2692 | 0.253630 | TGGGATGCTTTACCCTCCCT | 60.254 | 55.000 | 7.90 | 0.00 | 46.37 | 4.20 |
2835 | 2936 | 4.374843 | TTGCAATATGGCTGACATGTTC | 57.625 | 40.909 | 6.18 | 1.39 | 38.64 | 3.18 |
2841 | 2942 | 3.009301 | GCAGATTGCAATATGGCTGAC | 57.991 | 47.619 | 29.64 | 16.17 | 44.26 | 3.51 |
2916 | 3017 | 6.204301 | GCATCTGCATCTGTTTCTGTATATGT | 59.796 | 38.462 | 0.00 | 0.00 | 41.59 | 2.29 |
2917 | 3018 | 6.600350 | GCATCTGCATCTGTTTCTGTATATG | 58.400 | 40.000 | 0.00 | 0.00 | 41.59 | 1.78 |
2918 | 3019 | 6.798315 | GCATCTGCATCTGTTTCTGTATAT | 57.202 | 37.500 | 0.00 | 0.00 | 41.59 | 0.86 |
2934 | 3108 | 5.464168 | AGTACAAACAAAATCTGCATCTGC | 58.536 | 37.500 | 0.00 | 0.00 | 42.50 | 4.26 |
2962 | 3136 | 6.667848 | TCTCCTAGTTCCACTTCATGATGTAA | 59.332 | 38.462 | 13.40 | 3.76 | 0.00 | 2.41 |
2978 | 3152 | 5.308825 | CCTTGTGTGATTTGTCTCCTAGTT | 58.691 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2980 | 3154 | 3.686726 | GCCTTGTGTGATTTGTCTCCTAG | 59.313 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2981 | 3155 | 3.327757 | AGCCTTGTGTGATTTGTCTCCTA | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
2982 | 3156 | 2.107204 | AGCCTTGTGTGATTTGTCTCCT | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2983 | 3157 | 2.508526 | AGCCTTGTGTGATTTGTCTCC | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
2984 | 3158 | 4.937620 | TCATAGCCTTGTGTGATTTGTCTC | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2990 | 3164 | 3.055819 | ACGTCTCATAGCCTTGTGTGATT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3079 | 3253 | 1.023502 | GAGGAGTACTCGTGTAGCCC | 58.976 | 60.000 | 22.12 | 3.85 | 36.29 | 5.19 |
3101 | 3275 | 1.204146 | TCACCCTCCAGCTAACCATC | 58.796 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3118 | 3292 | 1.737236 | GCATGATGTTACCGCAGTTCA | 59.263 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3119 | 3293 | 1.737236 | TGCATGATGTTACCGCAGTTC | 59.263 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
3172 | 3346 | 8.417106 | TCCTCTTTCAGATTGTCATATGTAGAC | 58.583 | 37.037 | 1.90 | 0.00 | 36.55 | 2.59 |
3184 | 3358 | 6.871844 | TGTAGACTCATCCTCTTTCAGATTG | 58.128 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3187 | 3361 | 8.001292 | TCATATGTAGACTCATCCTCTTTCAGA | 58.999 | 37.037 | 1.90 | 0.00 | 0.00 | 3.27 |
3188 | 3362 | 8.175925 | TCATATGTAGACTCATCCTCTTTCAG | 57.824 | 38.462 | 1.90 | 0.00 | 0.00 | 3.02 |
3189 | 3363 | 8.539117 | TTCATATGTAGACTCATCCTCTTTCA | 57.461 | 34.615 | 1.90 | 0.00 | 0.00 | 2.69 |
3190 | 3364 | 9.823647 | TTTTCATATGTAGACTCATCCTCTTTC | 57.176 | 33.333 | 1.90 | 0.00 | 0.00 | 2.62 |
3192 | 3366 | 9.829507 | CTTTTTCATATGTAGACTCATCCTCTT | 57.170 | 33.333 | 1.90 | 0.00 | 0.00 | 2.85 |
3193 | 3367 | 7.930865 | GCTTTTTCATATGTAGACTCATCCTCT | 59.069 | 37.037 | 1.90 | 0.00 | 0.00 | 3.69 |
3194 | 3368 | 7.712639 | TGCTTTTTCATATGTAGACTCATCCTC | 59.287 | 37.037 | 1.90 | 0.00 | 0.00 | 3.71 |
3195 | 3369 | 7.568349 | TGCTTTTTCATATGTAGACTCATCCT | 58.432 | 34.615 | 1.90 | 0.00 | 0.00 | 3.24 |
3196 | 3370 | 7.792374 | TGCTTTTTCATATGTAGACTCATCC | 57.208 | 36.000 | 1.90 | 0.00 | 0.00 | 3.51 |
3197 | 3371 | 8.834465 | ACATGCTTTTTCATATGTAGACTCATC | 58.166 | 33.333 | 1.90 | 0.00 | 32.41 | 2.92 |
3198 | 3372 | 8.743085 | ACATGCTTTTTCATATGTAGACTCAT | 57.257 | 30.769 | 1.90 | 0.00 | 32.41 | 2.90 |
3199 | 3373 | 9.098355 | GTACATGCTTTTTCATATGTAGACTCA | 57.902 | 33.333 | 1.90 | 0.00 | 36.87 | 3.41 |
3200 | 3374 | 9.098355 | TGTACATGCTTTTTCATATGTAGACTC | 57.902 | 33.333 | 1.90 | 0.00 | 36.87 | 3.36 |
3201 | 3375 | 9.618890 | ATGTACATGCTTTTTCATATGTAGACT | 57.381 | 29.630 | 7.78 | 0.00 | 36.87 | 3.24 |
3202 | 3376 | 9.869844 | GATGTACATGCTTTTTCATATGTAGAC | 57.130 | 33.333 | 14.43 | 0.00 | 36.87 | 2.59 |
3203 | 3377 | 8.764287 | CGATGTACATGCTTTTTCATATGTAGA | 58.236 | 33.333 | 14.43 | 0.00 | 36.87 | 2.59 |
3204 | 3378 | 8.764287 | TCGATGTACATGCTTTTTCATATGTAG | 58.236 | 33.333 | 14.43 | 0.00 | 36.87 | 2.74 |
3205 | 3379 | 8.547894 | GTCGATGTACATGCTTTTTCATATGTA | 58.452 | 33.333 | 14.43 | 0.00 | 35.55 | 2.29 |
3206 | 3380 | 7.065683 | TGTCGATGTACATGCTTTTTCATATGT | 59.934 | 33.333 | 14.43 | 0.00 | 37.51 | 2.29 |
3207 | 3381 | 7.408910 | TGTCGATGTACATGCTTTTTCATATG | 58.591 | 34.615 | 14.43 | 0.00 | 0.00 | 1.78 |
3208 | 3382 | 7.495606 | TCTGTCGATGTACATGCTTTTTCATAT | 59.504 | 33.333 | 14.43 | 0.00 | 0.00 | 1.78 |
3209 | 3383 | 6.816140 | TCTGTCGATGTACATGCTTTTTCATA | 59.184 | 34.615 | 14.43 | 0.00 | 0.00 | 2.15 |
3210 | 3384 | 5.643348 | TCTGTCGATGTACATGCTTTTTCAT | 59.357 | 36.000 | 14.43 | 0.00 | 0.00 | 2.57 |
3211 | 3385 | 4.994217 | TCTGTCGATGTACATGCTTTTTCA | 59.006 | 37.500 | 14.43 | 2.32 | 0.00 | 2.69 |
3212 | 3386 | 5.530519 | TCTGTCGATGTACATGCTTTTTC | 57.469 | 39.130 | 14.43 | 0.00 | 0.00 | 2.29 |
3213 | 3387 | 5.674569 | GCATCTGTCGATGTACATGCTTTTT | 60.675 | 40.000 | 14.43 | 0.00 | 46.96 | 1.94 |
3214 | 3388 | 4.201851 | GCATCTGTCGATGTACATGCTTTT | 60.202 | 41.667 | 14.43 | 0.00 | 46.96 | 2.27 |
3215 | 3389 | 3.310774 | GCATCTGTCGATGTACATGCTTT | 59.689 | 43.478 | 14.43 | 0.00 | 46.96 | 3.51 |
3499 | 3673 | 5.014755 | TGGGCCTACATATTTCCGGATAATT | 59.985 | 40.000 | 4.15 | 0.00 | 0.00 | 1.40 |
3500 | 3674 | 4.538490 | TGGGCCTACATATTTCCGGATAAT | 59.462 | 41.667 | 4.15 | 10.81 | 0.00 | 1.28 |
3501 | 3675 | 3.911260 | TGGGCCTACATATTTCCGGATAA | 59.089 | 43.478 | 4.15 | 2.94 | 0.00 | 1.75 |
3502 | 3676 | 3.522759 | TGGGCCTACATATTTCCGGATA | 58.477 | 45.455 | 4.15 | 0.00 | 0.00 | 2.59 |
3503 | 3677 | 2.344592 | TGGGCCTACATATTTCCGGAT | 58.655 | 47.619 | 4.15 | 0.00 | 0.00 | 4.18 |
3504 | 3678 | 1.809133 | TGGGCCTACATATTTCCGGA | 58.191 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3505 | 3679 | 2.819608 | CAATGGGCCTACATATTTCCGG | 59.180 | 50.000 | 4.53 | 0.00 | 0.00 | 5.14 |
3506 | 3680 | 3.486383 | ACAATGGGCCTACATATTTCCG | 58.514 | 45.455 | 4.53 | 0.00 | 0.00 | 4.30 |
3507 | 3681 | 8.644374 | TTATAACAATGGGCCTACATATTTCC | 57.356 | 34.615 | 4.53 | 0.00 | 0.00 | 3.13 |
3535 | 3709 | 9.528489 | AGAAAACCTTATTGCCAGTCTTTTATA | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
3536 | 3710 | 8.422577 | AGAAAACCTTATTGCCAGTCTTTTAT | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3537 | 3711 | 7.833285 | AGAAAACCTTATTGCCAGTCTTTTA | 57.167 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3538 | 3712 | 6.731292 | AGAAAACCTTATTGCCAGTCTTTT | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3539 | 3713 | 7.004691 | AGTAGAAAACCTTATTGCCAGTCTTT | 58.995 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3540 | 3714 | 6.543735 | AGTAGAAAACCTTATTGCCAGTCTT | 58.456 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3541 | 3715 | 6.128138 | AGTAGAAAACCTTATTGCCAGTCT | 57.872 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
3542 | 3716 | 7.104290 | AGTAGTAGAAAACCTTATTGCCAGTC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
3543 | 3717 | 7.017319 | AGTAGTAGAAAACCTTATTGCCAGT | 57.983 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3544 | 3718 | 6.539103 | GGAGTAGTAGAAAACCTTATTGCCAG | 59.461 | 42.308 | 0.00 | 0.00 | 0.00 | 4.85 |
3545 | 3719 | 6.214819 | AGGAGTAGTAGAAAACCTTATTGCCA | 59.785 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
3546 | 3720 | 6.651086 | AGGAGTAGTAGAAAACCTTATTGCC | 58.349 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3547 | 3721 | 9.262358 | CATAGGAGTAGTAGAAAACCTTATTGC | 57.738 | 37.037 | 0.00 | 0.00 | 0.00 | 3.56 |
3548 | 3722 | 9.765795 | CCATAGGAGTAGTAGAAAACCTTATTG | 57.234 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.