Multiple sequence alignment - TraesCS2D01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G308800 chr2D 100.000 2936 0 0 1 2936 395643033 395640098 0.000000e+00 5422.0
1 TraesCS2D01G308800 chr2D 84.615 117 14 4 134 248 478831844 478831730 2.390000e-21 113.0
2 TraesCS2D01G308800 chr2D 87.692 65 3 1 2580 2639 572958429 572958365 1.460000e-08 71.3
3 TraesCS2D01G308800 chr2D 100.000 35 0 0 652 686 395642345 395642311 6.790000e-07 65.8
4 TraesCS2D01G308800 chr2D 100.000 35 0 0 689 723 395642382 395642348 6.790000e-07 65.8
5 TraesCS2D01G308800 chr2A 96.985 2355 48 13 233 2576 533949224 533946882 0.000000e+00 3934.0
6 TraesCS2D01G308800 chr2A 93.590 156 8 1 2775 2930 533946823 533946670 6.330000e-57 231.0
7 TraesCS2D01G308800 chr2A 97.600 125 2 1 1 124 533949630 533949506 2.290000e-51 213.0
8 TraesCS2D01G308800 chr2A 81.884 138 16 6 2640 2776 759451815 759451686 1.110000e-19 108.0
9 TraesCS2D01G308800 chr2A 81.148 122 15 7 134 248 621376742 621376862 1.120000e-14 91.6
10 TraesCS2D01G308800 chr2A 89.062 64 2 3 2581 2639 759451847 759451784 1.130000e-09 75.0
11 TraesCS2D01G308800 chr2A 86.364 66 4 3 2579 2639 728022311 728022246 1.890000e-07 67.6
12 TraesCS2D01G308800 chr2A 100.000 35 0 0 652 686 533948767 533948733 6.790000e-07 65.8
13 TraesCS2D01G308800 chr2B 95.474 2364 81 12 220 2574 469196238 469193892 0.000000e+00 3749.0
14 TraesCS2D01G308800 chr2B 96.552 145 2 1 1 142 469196909 469196765 1.360000e-58 237.0
15 TraesCS2D01G308800 chr2B 95.833 48 2 0 2536 2583 469193872 469193825 8.720000e-11 78.7
16 TraesCS2D01G308800 chr1A 84.892 139 16 5 2640 2775 495129133 495128997 5.100000e-28 135.0
17 TraesCS2D01G308800 chr1A 90.323 62 1 4 2583 2639 495129163 495129102 3.140000e-10 76.8
18 TraesCS2D01G308800 chr4A 87.500 72 3 4 2574 2639 148757357 148757428 8.720000e-11 78.7
19 TraesCS2D01G308800 chr5A 88.710 62 3 3 2582 2639 521287981 521287920 4.060000e-09 73.1
20 TraesCS2D01G308800 chr7A 87.692 65 3 4 2580 2639 578430437 578430501 1.460000e-08 71.3
21 TraesCS2D01G308800 chr5D 88.710 62 2 4 2583 2639 520249117 520249178 1.460000e-08 71.3
22 TraesCS2D01G308800 chr6A 79.612 103 16 3 2600 2702 47135018 47134921 5.250000e-08 69.4
23 TraesCS2D01G308800 chr3D 96.774 31 1 0 73 103 496949866 496949836 5.000000e-03 52.8
24 TraesCS2D01G308800 chr3B 100.000 28 0 0 73 100 656585691 656585664 5.000000e-03 52.8
25 TraesCS2D01G308800 chr3A 100.000 28 0 0 73 100 637613153 637613180 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G308800 chr2D 395640098 395643033 2935 True 1851.20 5422 100.00000 1 2936 3 chr2D.!!$R3 2935
1 TraesCS2D01G308800 chr2A 533946670 533949630 2960 True 1110.95 3934 97.04375 1 2930 4 chr2A.!!$R2 2929
2 TraesCS2D01G308800 chr2B 469193825 469196909 3084 True 1354.90 3749 95.95300 1 2583 3 chr2B.!!$R1 2582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 215 0.030705 CCTCTCCCCCAATCCTCTCA 60.031 60.0 0.0 0.0 0.0 3.27 F
285 738 0.322997 TCGTCCCCATCCGCAATTTT 60.323 50.0 0.0 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1795 1.337635 ACTGAGAAGGAAAGCGAGCAG 60.338 52.381 0.00 0.0 0.00 4.24 R
1991 2447 2.833943 GGAAGAAACCAATGGAATGGCT 59.166 45.455 6.16 0.0 44.75 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 146 2.125326 CGTCCATCTCCGTGCCCTA 61.125 63.158 0.00 0.00 0.00 3.53
143 147 1.742768 GTCCATCTCCGTGCCCTAG 59.257 63.158 0.00 0.00 0.00 3.02
144 148 0.755698 GTCCATCTCCGTGCCCTAGA 60.756 60.000 0.00 0.00 0.00 2.43
145 149 0.468214 TCCATCTCCGTGCCCTAGAG 60.468 60.000 0.00 0.00 0.00 2.43
146 150 1.365633 CATCTCCGTGCCCTAGAGC 59.634 63.158 0.00 0.00 0.00 4.09
147 151 1.112315 CATCTCCGTGCCCTAGAGCT 61.112 60.000 0.00 0.00 0.00 4.09
148 152 1.112315 ATCTCCGTGCCCTAGAGCTG 61.112 60.000 0.00 0.00 0.00 4.24
149 153 3.438017 CTCCGTGCCCTAGAGCTGC 62.438 68.421 0.00 0.00 0.00 5.25
150 154 4.537433 CCGTGCCCTAGAGCTGCC 62.537 72.222 0.00 0.00 0.00 4.85
151 155 4.880537 CGTGCCCTAGAGCTGCCG 62.881 72.222 0.00 0.00 0.00 5.69
156 160 4.880537 CCTAGAGCTGCCGCCGTG 62.881 72.222 0.00 0.00 36.60 4.94
170 174 2.885644 CGTGCCGTCGCTTAGCAT 60.886 61.111 4.70 0.00 39.04 3.79
171 175 2.860628 CGTGCCGTCGCTTAGCATC 61.861 63.158 4.70 0.00 39.04 3.91
172 176 1.809619 GTGCCGTCGCTTAGCATCA 60.810 57.895 4.70 0.00 39.04 3.07
173 177 1.809619 TGCCGTCGCTTAGCATCAC 60.810 57.895 4.70 0.00 35.36 3.06
174 178 2.526120 GCCGTCGCTTAGCATCACC 61.526 63.158 4.70 0.00 0.00 4.02
175 179 1.153647 CCGTCGCTTAGCATCACCA 60.154 57.895 4.70 0.00 0.00 4.17
176 180 1.421410 CCGTCGCTTAGCATCACCAC 61.421 60.000 4.70 0.00 0.00 4.16
177 181 1.421410 CGTCGCTTAGCATCACCACC 61.421 60.000 4.70 0.00 0.00 4.61
178 182 1.153647 TCGCTTAGCATCACCACCG 60.154 57.895 4.70 0.00 0.00 4.94
179 183 1.153647 CGCTTAGCATCACCACCGA 60.154 57.895 4.70 0.00 0.00 4.69
180 184 1.421410 CGCTTAGCATCACCACCGAC 61.421 60.000 4.70 0.00 0.00 4.79
181 185 1.421410 GCTTAGCATCACCACCGACG 61.421 60.000 0.00 0.00 0.00 5.12
182 186 1.421410 CTTAGCATCACCACCGACGC 61.421 60.000 0.00 0.00 0.00 5.19
183 187 2.845752 TTAGCATCACCACCGACGCC 62.846 60.000 0.00 0.00 0.00 5.68
184 188 4.760047 GCATCACCACCGACGCCT 62.760 66.667 0.00 0.00 0.00 5.52
185 189 2.509336 CATCACCACCGACGCCTC 60.509 66.667 0.00 0.00 0.00 4.70
186 190 2.994995 ATCACCACCGACGCCTCA 60.995 61.111 0.00 0.00 0.00 3.86
187 191 3.006756 ATCACCACCGACGCCTCAG 62.007 63.158 0.00 0.00 0.00 3.35
206 210 2.778717 CCCCCTCTCCCCCAATCC 60.779 72.222 0.00 0.00 0.00 3.01
207 211 2.378522 CCCCTCTCCCCCAATCCT 59.621 66.667 0.00 0.00 0.00 3.24
208 212 1.772156 CCCCTCTCCCCCAATCCTC 60.772 68.421 0.00 0.00 0.00 3.71
209 213 1.319799 CCCTCTCCCCCAATCCTCT 59.680 63.158 0.00 0.00 0.00 3.69
210 214 0.766288 CCCTCTCCCCCAATCCTCTC 60.766 65.000 0.00 0.00 0.00 3.20
211 215 0.030705 CCTCTCCCCCAATCCTCTCA 60.031 60.000 0.00 0.00 0.00 3.27
212 216 1.422531 CTCTCCCCCAATCCTCTCAG 58.577 60.000 0.00 0.00 0.00 3.35
213 217 0.692419 TCTCCCCCAATCCTCTCAGC 60.692 60.000 0.00 0.00 0.00 4.26
214 218 2.037620 CTCCCCCAATCCTCTCAGCG 62.038 65.000 0.00 0.00 0.00 5.18
215 219 2.370445 CCCCCAATCCTCTCAGCGT 61.370 63.158 0.00 0.00 0.00 5.07
216 220 1.153289 CCCCAATCCTCTCAGCGTG 60.153 63.158 0.00 0.00 0.00 5.34
217 221 1.599047 CCCAATCCTCTCAGCGTGT 59.401 57.895 0.00 0.00 0.00 4.49
218 222 0.460987 CCCAATCCTCTCAGCGTGTC 60.461 60.000 0.00 0.00 0.00 3.67
250 703 1.536284 CGCTCCCGTTCTACCTCATTC 60.536 57.143 0.00 0.00 0.00 2.67
285 738 0.322997 TCGTCCCCATCCGCAATTTT 60.323 50.000 0.00 0.00 0.00 1.82
312 765 6.125029 CCATTGTTTTCTGAGGTATGAGGAT 58.875 40.000 0.00 0.00 0.00 3.24
315 768 7.687941 TTGTTTTCTGAGGTATGAGGATTTC 57.312 36.000 0.00 0.00 0.00 2.17
330 783 2.489971 GATTTCGTCATTCCGCCCATA 58.510 47.619 0.00 0.00 0.00 2.74
548 1002 6.918892 TCACCTAATCATAATGAAACGGTG 57.081 37.500 11.14 11.14 39.72 4.94
558 1012 6.887545 TCATAATGAAACGGTGGGTTAATCTT 59.112 34.615 0.00 0.00 38.08 2.40
559 1013 8.047911 TCATAATGAAACGGTGGGTTAATCTTA 58.952 33.333 0.00 0.00 38.08 2.10
631 1085 9.976511 AACTATGATGGATTTTATTCTGCAATG 57.023 29.630 0.00 0.00 0.00 2.82
659 1113 5.927281 ATGCATTGAAAGAAGCAGGTAAT 57.073 34.783 0.00 0.00 40.71 1.89
756 1210 5.063186 GTCAACAATGAGCACTGACTAGATG 59.937 44.000 0.00 0.00 35.88 2.90
819 1274 8.831550 ACAAGTCAAAGTCTTTCTTCTGTTATC 58.168 33.333 0.00 0.00 35.02 1.75
1339 1795 1.471684 CAGAGCCAGGATTGTTCTTGC 59.528 52.381 0.00 0.00 0.00 4.01
1991 2447 7.177216 AGCTGATTGTTCAAGGACAAATTGATA 59.823 33.333 0.00 0.00 42.29 2.15
2081 2537 8.753497 ATTAAATAGGGACAACATTCTCCTTC 57.247 34.615 0.00 0.00 0.00 3.46
2179 2635 6.006449 AGTAGTGAAGATCAGCCATGTTTTT 58.994 36.000 0.00 0.00 0.00 1.94
2307 2764 8.981647 AGATTTGTTTTTCTAAATGATGTGTGC 58.018 29.630 0.00 0.00 0.00 4.57
2356 2813 9.567848 AGTGTATCTTTTATAAACCAATTTGCG 57.432 29.630 0.00 0.00 0.00 4.85
2418 2875 7.202526 TCTTTCTTAATCACAAGCTTTGTTGG 58.797 34.615 0.00 0.00 43.23 3.77
2432 2889 6.252995 AGCTTTGTTGGGTATGGAAAAGATA 58.747 36.000 0.00 0.00 0.00 1.98
2457 2914 8.954950 ATTCAGAATCTTGTAATCACCTACTG 57.045 34.615 0.00 0.00 0.00 2.74
2458 2915 6.341316 TCAGAATCTTGTAATCACCTACTGC 58.659 40.000 0.00 0.00 0.00 4.40
2459 2916 5.525378 CAGAATCTTGTAATCACCTACTGCC 59.475 44.000 0.00 0.00 0.00 4.85
2460 2917 5.426833 AGAATCTTGTAATCACCTACTGCCT 59.573 40.000 0.00 0.00 0.00 4.75
2461 2918 6.611642 AGAATCTTGTAATCACCTACTGCCTA 59.388 38.462 0.00 0.00 0.00 3.93
2462 2919 6.808321 ATCTTGTAATCACCTACTGCCTAA 57.192 37.500 0.00 0.00 0.00 2.69
2463 2920 6.222038 TCTTGTAATCACCTACTGCCTAAG 57.778 41.667 0.00 0.00 0.00 2.18
2509 2967 9.350951 GCCTATTTATTTTACCAGATTACCAGT 57.649 33.333 0.00 0.00 0.00 4.00
2527 2992 3.558505 CAGTTTTTCAGAATCGTGCTGG 58.441 45.455 0.00 0.00 34.20 4.85
2533 2998 1.756538 TCAGAATCGTGCTGGCTATGA 59.243 47.619 0.00 0.00 34.20 2.15
2583 3105 9.679661 TTTGAGATAGCCAGATTTATTGTTACA 57.320 29.630 0.00 0.00 0.00 2.41
2584 3106 8.893219 TGAGATAGCCAGATTTATTGTTACAG 57.107 34.615 0.00 0.00 0.00 2.74
2585 3107 8.486210 TGAGATAGCCAGATTTATTGTTACAGT 58.514 33.333 0.00 0.00 0.00 3.55
2586 3108 9.331282 GAGATAGCCAGATTTATTGTTACAGTT 57.669 33.333 0.00 0.00 0.00 3.16
2587 3109 9.686683 AGATAGCCAGATTTATTGTTACAGTTT 57.313 29.630 0.00 0.00 0.00 2.66
2590 3112 6.868339 AGCCAGATTTATTGTTACAGTTTTGC 59.132 34.615 0.00 0.00 0.00 3.68
2591 3113 6.868339 GCCAGATTTATTGTTACAGTTTTGCT 59.132 34.615 0.00 0.00 0.00 3.91
2592 3114 8.026607 GCCAGATTTATTGTTACAGTTTTGCTA 58.973 33.333 0.00 0.00 0.00 3.49
2593 3115 9.906660 CCAGATTTATTGTTACAGTTTTGCTAA 57.093 29.630 0.00 0.00 0.00 3.09
2607 3129 3.808466 TTGCTAAAACACAATGTGCCA 57.192 38.095 14.01 0.00 36.98 4.92
2608 3130 4.333913 TTGCTAAAACACAATGTGCCAT 57.666 36.364 14.01 2.01 36.98 4.40
2609 3131 5.459536 TTGCTAAAACACAATGTGCCATA 57.540 34.783 14.01 3.12 36.98 2.74
2610 3132 5.459536 TGCTAAAACACAATGTGCCATAA 57.540 34.783 14.01 0.00 36.98 1.90
2611 3133 5.468592 TGCTAAAACACAATGTGCCATAAG 58.531 37.500 14.01 6.18 36.98 1.73
2612 3134 5.010516 TGCTAAAACACAATGTGCCATAAGT 59.989 36.000 14.01 0.00 36.98 2.24
2613 3135 6.207614 TGCTAAAACACAATGTGCCATAAGTA 59.792 34.615 14.01 2.05 36.98 2.24
2614 3136 7.093988 TGCTAAAACACAATGTGCCATAAGTAT 60.094 33.333 14.01 0.00 36.98 2.12
2615 3137 7.759433 GCTAAAACACAATGTGCCATAAGTATT 59.241 33.333 14.01 0.00 36.98 1.89
2616 3138 7.887996 AAAACACAATGTGCCATAAGTATTG 57.112 32.000 14.01 0.00 36.98 1.90
2617 3139 4.997565 ACACAATGTGCCATAAGTATTGC 58.002 39.130 14.01 0.00 36.98 3.56
2618 3140 4.462132 ACACAATGTGCCATAAGTATTGCA 59.538 37.500 14.01 0.00 36.98 4.08
2626 3148 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
2627 3149 5.239306 TGCCATAAGTATTGCACATCTAAGC 59.761 40.000 0.00 0.00 30.49 3.09
2628 3150 5.335191 GCCATAAGTATTGCACATCTAAGCC 60.335 44.000 0.00 0.00 0.00 4.35
2629 3151 5.106948 CCATAAGTATTGCACATCTAAGCCG 60.107 44.000 0.00 0.00 0.00 5.52
2630 3152 3.543680 AGTATTGCACATCTAAGCCGT 57.456 42.857 0.00 0.00 0.00 5.68
2631 3153 4.665833 AGTATTGCACATCTAAGCCGTA 57.334 40.909 0.00 0.00 0.00 4.02
2632 3154 5.215252 AGTATTGCACATCTAAGCCGTAT 57.785 39.130 0.00 0.00 0.00 3.06
2633 3155 4.991056 AGTATTGCACATCTAAGCCGTATG 59.009 41.667 0.00 0.00 0.00 2.39
2634 3156 2.979814 TGCACATCTAAGCCGTATGT 57.020 45.000 0.00 0.00 34.22 2.29
2635 3157 2.821546 TGCACATCTAAGCCGTATGTC 58.178 47.619 0.00 0.00 31.60 3.06
2636 3158 2.167487 TGCACATCTAAGCCGTATGTCA 59.833 45.455 0.00 0.00 31.60 3.58
2637 3159 3.181466 TGCACATCTAAGCCGTATGTCAT 60.181 43.478 0.00 0.00 31.60 3.06
2638 3160 3.809832 GCACATCTAAGCCGTATGTCATT 59.190 43.478 0.00 0.00 31.60 2.57
2639 3161 4.988540 GCACATCTAAGCCGTATGTCATTA 59.011 41.667 0.00 0.00 31.60 1.90
2640 3162 5.639506 GCACATCTAAGCCGTATGTCATTAT 59.360 40.000 0.00 0.00 31.60 1.28
2641 3163 6.811665 GCACATCTAAGCCGTATGTCATTATA 59.188 38.462 0.00 0.00 31.60 0.98
2642 3164 7.330946 GCACATCTAAGCCGTATGTCATTATAA 59.669 37.037 0.00 0.00 31.60 0.98
2643 3165 8.864024 CACATCTAAGCCGTATGTCATTATAAG 58.136 37.037 0.00 0.00 31.60 1.73
2644 3166 8.585881 ACATCTAAGCCGTATGTCATTATAAGT 58.414 33.333 0.00 0.00 0.00 2.24
2649 3171 7.596749 AGCCGTATGTCATTATAAGTATTGC 57.403 36.000 0.00 0.00 0.00 3.56
2650 3172 7.158697 AGCCGTATGTCATTATAAGTATTGCA 58.841 34.615 0.00 0.00 0.00 4.08
2651 3173 7.117812 AGCCGTATGTCATTATAAGTATTGCAC 59.882 37.037 0.00 0.00 0.00 4.57
2652 3174 7.095397 GCCGTATGTCATTATAAGTATTGCACA 60.095 37.037 0.00 0.00 0.00 4.57
2653 3175 8.935844 CCGTATGTCATTATAAGTATTGCACAT 58.064 33.333 0.00 0.00 0.00 3.21
2654 3176 9.958285 CGTATGTCATTATAAGTATTGCACATC 57.042 33.333 0.00 0.00 0.00 3.06
2660 3182 9.219603 TCATTATAAGTATTGCACATCTAAGCC 57.780 33.333 0.00 0.00 0.00 4.35
2661 3183 9.002600 CATTATAAGTATTGCACATCTAAGCCA 57.997 33.333 0.00 0.00 0.00 4.75
2662 3184 9.745018 ATTATAAGTATTGCACATCTAAGCCAT 57.255 29.630 0.00 0.00 0.00 4.40
2665 3187 7.444629 AAGTATTGCACATCTAAGCCATATG 57.555 36.000 0.00 0.00 0.00 1.78
2666 3188 6.537355 AGTATTGCACATCTAAGCCATATGT 58.463 36.000 1.24 0.00 34.22 2.29
2667 3189 7.000472 AGTATTGCACATCTAAGCCATATGTT 59.000 34.615 1.24 0.00 31.60 2.71
2668 3190 8.156820 AGTATTGCACATCTAAGCCATATGTTA 58.843 33.333 1.24 0.00 31.60 2.41
2669 3191 8.950210 GTATTGCACATCTAAGCCATATGTTAT 58.050 33.333 1.24 0.00 31.60 1.89
2670 3192 7.822161 TTGCACATCTAAGCCATATGTTATT 57.178 32.000 1.24 0.00 31.60 1.40
2671 3193 7.205737 TGCACATCTAAGCCATATGTTATTG 57.794 36.000 1.24 0.00 31.60 1.90
2672 3194 6.997476 TGCACATCTAAGCCATATGTTATTGA 59.003 34.615 1.24 0.00 31.60 2.57
2673 3195 7.666804 TGCACATCTAAGCCATATGTTATTGAT 59.333 33.333 1.24 0.00 31.60 2.57
2674 3196 8.517878 GCACATCTAAGCCATATGTTATTGATT 58.482 33.333 1.24 0.00 31.60 2.57
2682 3204 7.648142 AGCCATATGTTATTGATTTTACACGG 58.352 34.615 1.24 0.00 0.00 4.94
2683 3205 7.500892 AGCCATATGTTATTGATTTTACACGGA 59.499 33.333 1.24 0.00 0.00 4.69
2684 3206 7.803189 GCCATATGTTATTGATTTTACACGGAG 59.197 37.037 1.24 0.00 0.00 4.63
2685 3207 9.051679 CCATATGTTATTGATTTTACACGGAGA 57.948 33.333 1.24 0.00 0.00 3.71
2689 3211 8.554835 TGTTATTGATTTTACACGGAGATTCA 57.445 30.769 0.00 0.00 0.00 2.57
2690 3212 9.173021 TGTTATTGATTTTACACGGAGATTCAT 57.827 29.630 0.00 0.00 0.00 2.57
2691 3213 9.438291 GTTATTGATTTTACACGGAGATTCATG 57.562 33.333 0.00 0.00 0.00 3.07
2692 3214 7.630242 ATTGATTTTACACGGAGATTCATGT 57.370 32.000 0.00 0.00 0.00 3.21
2693 3215 6.421377 TGATTTTACACGGAGATTCATGTG 57.579 37.500 0.00 2.58 38.28 3.21
2694 3216 5.353956 TGATTTTACACGGAGATTCATGTGG 59.646 40.000 0.00 0.00 36.67 4.17
2695 3217 2.979814 TACACGGAGATTCATGTGGG 57.020 50.000 0.00 0.00 36.67 4.61
2696 3218 0.984230 ACACGGAGATTCATGTGGGT 59.016 50.000 0.00 0.00 36.67 4.51
2697 3219 2.184533 ACACGGAGATTCATGTGGGTA 58.815 47.619 0.00 0.00 36.67 3.69
2698 3220 2.771943 ACACGGAGATTCATGTGGGTAT 59.228 45.455 0.00 0.00 36.67 2.73
2699 3221 3.199946 ACACGGAGATTCATGTGGGTATT 59.800 43.478 0.00 0.00 36.67 1.89
2700 3222 4.199310 CACGGAGATTCATGTGGGTATTT 58.801 43.478 0.00 0.00 0.00 1.40
2701 3223 4.640201 CACGGAGATTCATGTGGGTATTTT 59.360 41.667 0.00 0.00 0.00 1.82
2702 3224 4.881850 ACGGAGATTCATGTGGGTATTTTC 59.118 41.667 0.00 0.00 0.00 2.29
2703 3225 4.275936 CGGAGATTCATGTGGGTATTTTCC 59.724 45.833 0.00 0.00 0.00 3.13
2704 3226 5.449553 GGAGATTCATGTGGGTATTTTCCT 58.550 41.667 0.00 0.00 0.00 3.36
2705 3227 5.893824 GGAGATTCATGTGGGTATTTTCCTT 59.106 40.000 0.00 0.00 0.00 3.36
2706 3228 6.381133 GGAGATTCATGTGGGTATTTTCCTTT 59.619 38.462 0.00 0.00 0.00 3.11
2707 3229 7.093333 GGAGATTCATGTGGGTATTTTCCTTTT 60.093 37.037 0.00 0.00 0.00 2.27
2708 3230 8.206126 AGATTCATGTGGGTATTTTCCTTTTT 57.794 30.769 0.00 0.00 0.00 1.94
2709 3231 8.314021 AGATTCATGTGGGTATTTTCCTTTTTC 58.686 33.333 0.00 0.00 0.00 2.29
2710 3232 7.610580 TTCATGTGGGTATTTTCCTTTTTCT 57.389 32.000 0.00 0.00 0.00 2.52
2711 3233 7.610580 TCATGTGGGTATTTTCCTTTTTCTT 57.389 32.000 0.00 0.00 0.00 2.52
2712 3234 8.028652 TCATGTGGGTATTTTCCTTTTTCTTT 57.971 30.769 0.00 0.00 0.00 2.52
2713 3235 9.148879 TCATGTGGGTATTTTCCTTTTTCTTTA 57.851 29.630 0.00 0.00 0.00 1.85
2714 3236 9.942850 CATGTGGGTATTTTCCTTTTTCTTTAT 57.057 29.630 0.00 0.00 0.00 1.40
2716 3238 9.374711 TGTGGGTATTTTCCTTTTTCTTTATCT 57.625 29.630 0.00 0.00 0.00 1.98
2744 3266 8.846943 TTTTATGCTTGATTGAGTCACTTAGA 57.153 30.769 0.00 0.00 36.32 2.10
2745 3267 9.453572 TTTTATGCTTGATTGAGTCACTTAGAT 57.546 29.630 0.00 0.00 36.32 1.98
2749 3271 9.703892 ATGCTTGATTGAGTCACTTAGATATAC 57.296 33.333 0.00 0.00 36.32 1.47
2750 3272 8.695456 TGCTTGATTGAGTCACTTAGATATACA 58.305 33.333 0.00 0.00 36.32 2.29
2751 3273 9.534565 GCTTGATTGAGTCACTTAGATATACAA 57.465 33.333 0.00 0.00 36.32 2.41
2786 3308 5.047943 ACGTCTAGATGTGCAGTTATATCCC 60.048 44.000 16.90 0.00 0.00 3.85
2792 3314 3.653164 TGTGCAGTTATATCCCCTCTCA 58.347 45.455 0.00 0.00 0.00 3.27
2794 3316 5.402630 TGTGCAGTTATATCCCCTCTCATA 58.597 41.667 0.00 0.00 0.00 2.15
2839 3361 0.179034 GCGAGGGATGGAATGAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
2845 3367 3.135530 AGGGATGGAATGAAGCTACTCAC 59.864 47.826 0.00 0.00 0.00 3.51
2848 3370 1.207089 TGGAATGAAGCTACTCACGGG 59.793 52.381 0.00 0.00 0.00 5.28
2919 3441 0.539669 GGTTTCTCCACCCCCACTTG 60.540 60.000 0.00 0.00 35.97 3.16
2930 3452 4.285775 CCACCCCCACTTGAAAATAACATT 59.714 41.667 0.00 0.00 0.00 2.71
2931 3453 5.482175 CCACCCCCACTTGAAAATAACATTA 59.518 40.000 0.00 0.00 0.00 1.90
2932 3454 6.350949 CCACCCCCACTTGAAAATAACATTAG 60.351 42.308 0.00 0.00 0.00 1.73
2933 3455 6.210584 CACCCCCACTTGAAAATAACATTAGT 59.789 38.462 0.00 0.00 0.00 2.24
2934 3456 6.436218 ACCCCCACTTGAAAATAACATTAGTC 59.564 38.462 0.00 0.00 0.00 2.59
2935 3457 6.663523 CCCCCACTTGAAAATAACATTAGTCT 59.336 38.462 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 34 2.468040 GCAGACAGCACGTATATTCGAC 59.532 50.000 8.85 0.58 44.79 4.20
154 158 1.809619 TGATGCTAAGCGACGGCAC 60.810 57.895 0.00 0.00 43.41 5.01
155 159 1.809619 GTGATGCTAAGCGACGGCA 60.810 57.895 0.00 0.00 43.41 5.69
156 160 2.526120 GGTGATGCTAAGCGACGGC 61.526 63.158 0.00 0.00 40.37 5.68
157 161 1.153647 TGGTGATGCTAAGCGACGG 60.154 57.895 0.00 0.00 0.00 4.79
158 162 1.421410 GGTGGTGATGCTAAGCGACG 61.421 60.000 0.00 0.00 0.00 5.12
159 163 1.421410 CGGTGGTGATGCTAAGCGAC 61.421 60.000 0.00 0.00 35.68 5.19
160 164 1.153647 CGGTGGTGATGCTAAGCGA 60.154 57.895 0.00 0.00 35.68 4.93
161 165 1.153647 TCGGTGGTGATGCTAAGCG 60.154 57.895 0.00 0.00 35.01 4.68
162 166 1.421410 CGTCGGTGGTGATGCTAAGC 61.421 60.000 0.00 0.00 0.00 3.09
163 167 1.421410 GCGTCGGTGGTGATGCTAAG 61.421 60.000 0.00 0.00 45.37 2.18
164 168 1.447140 GCGTCGGTGGTGATGCTAA 60.447 57.895 0.00 0.00 45.37 3.09
165 169 2.183300 GCGTCGGTGGTGATGCTA 59.817 61.111 0.00 0.00 45.37 3.49
168 172 2.509336 GAGGCGTCGGTGGTGATG 60.509 66.667 0.00 0.00 0.00 3.07
169 173 2.994995 TGAGGCGTCGGTGGTGAT 60.995 61.111 1.39 0.00 0.00 3.06
170 174 3.680786 CTGAGGCGTCGGTGGTGA 61.681 66.667 7.08 0.00 0.00 4.02
189 193 2.778717 GGATTGGGGGAGAGGGGG 60.779 72.222 0.00 0.00 0.00 5.40
190 194 1.772156 GAGGATTGGGGGAGAGGGG 60.772 68.421 0.00 0.00 0.00 4.79
191 195 0.766288 GAGAGGATTGGGGGAGAGGG 60.766 65.000 0.00 0.00 0.00 4.30
192 196 0.030705 TGAGAGGATTGGGGGAGAGG 60.031 60.000 0.00 0.00 0.00 3.69
193 197 1.422531 CTGAGAGGATTGGGGGAGAG 58.577 60.000 0.00 0.00 0.00 3.20
194 198 0.692419 GCTGAGAGGATTGGGGGAGA 60.692 60.000 0.00 0.00 0.00 3.71
195 199 1.835693 GCTGAGAGGATTGGGGGAG 59.164 63.158 0.00 0.00 0.00 4.30
196 200 2.066393 CGCTGAGAGGATTGGGGGA 61.066 63.158 0.00 0.00 0.00 4.81
197 201 2.370445 ACGCTGAGAGGATTGGGGG 61.370 63.158 0.00 0.00 0.00 5.40
198 202 1.153289 CACGCTGAGAGGATTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
199 203 0.460987 GACACGCTGAGAGGATTGGG 60.461 60.000 0.00 0.00 0.00 4.12
200 204 0.803768 CGACACGCTGAGAGGATTGG 60.804 60.000 0.00 0.00 0.00 3.16
201 205 2.658538 CGACACGCTGAGAGGATTG 58.341 57.895 0.00 0.00 0.00 2.67
285 738 2.380064 ACCTCAGAAAACAATGGCCA 57.620 45.000 8.56 8.56 0.00 5.36
312 765 1.948104 CTATGGGCGGAATGACGAAA 58.052 50.000 0.00 0.00 35.47 3.46
315 768 3.642755 GCTATGGGCGGAATGACG 58.357 61.111 0.00 0.00 0.00 4.35
344 797 7.521871 AGAGAAACAAAAATCAGCAAGATCT 57.478 32.000 0.00 0.00 35.39 2.75
352 805 6.418956 TCGAAACGAGAGAAACAAAAATCAG 58.581 36.000 0.00 0.00 0.00 2.90
471 925 1.384222 CGGCAGGGGCAAAATAGTCC 61.384 60.000 0.00 0.00 43.71 3.85
548 1002 8.204836 TGAGCATAGTTCTCTTAAGATTAACCC 58.795 37.037 19.61 10.83 0.00 4.11
558 1012 7.867909 CCGTGATTTATGAGCATAGTTCTCTTA 59.132 37.037 0.00 0.00 0.00 2.10
559 1013 6.703607 CCGTGATTTATGAGCATAGTTCTCTT 59.296 38.462 0.00 0.00 0.00 2.85
659 1113 3.435026 CCAAACCCTTGACCTCTTCAGAA 60.435 47.826 0.00 0.00 34.94 3.02
756 1210 4.142730 CCATGCTTAACAGACAAGCTTCTC 60.143 45.833 0.00 0.00 46.85 2.87
1339 1795 1.337635 ACTGAGAAGGAAAGCGAGCAG 60.338 52.381 0.00 0.00 0.00 4.24
1991 2447 2.833943 GGAAGAAACCAATGGAATGGCT 59.166 45.455 6.16 0.00 44.75 4.75
2179 2635 6.911250 TCAATGTACAGAAGACAGTAAGGA 57.089 37.500 0.33 0.00 0.00 3.36
2331 2788 9.349145 ACGCAAATTGGTTTATAAAAGATACAC 57.651 29.630 0.00 0.00 0.00 2.90
2356 2813 8.038351 AGAGAGCCTTGAAGTTAGATTTTAGAC 58.962 37.037 0.00 0.00 0.00 2.59
2432 2889 7.497249 GCAGTAGGTGATTACAAGATTCTGAAT 59.503 37.037 1.81 1.81 0.00 2.57
2448 2905 0.902531 GGCACTTAGGCAGTAGGTGA 59.097 55.000 10.64 0.00 40.42 4.02
2457 2914 4.451900 ACATACAACATAGGCACTTAGGC 58.548 43.478 0.00 0.00 41.75 3.93
2458 2915 6.701841 CAGTACATACAACATAGGCACTTAGG 59.298 42.308 0.00 0.00 41.75 2.69
2459 2916 6.201044 GCAGTACATACAACATAGGCACTTAG 59.799 42.308 0.00 0.00 41.75 2.18
2460 2917 6.046593 GCAGTACATACAACATAGGCACTTA 58.953 40.000 0.00 0.00 41.75 2.24
2461 2918 4.876107 GCAGTACATACAACATAGGCACTT 59.124 41.667 0.00 0.00 41.75 3.16
2462 2919 4.442706 GCAGTACATACAACATAGGCACT 58.557 43.478 0.00 0.00 46.37 4.40
2463 2920 3.560068 GGCAGTACATACAACATAGGCAC 59.440 47.826 0.00 0.00 0.00 5.01
2509 2967 2.229792 AGCCAGCACGATTCTGAAAAA 58.770 42.857 0.00 0.00 33.54 1.94
2583 3105 7.130014 ATGGCACATTGTGTTTTAGCAAAACT 61.130 34.615 17.64 3.56 46.91 2.66
2585 3107 4.507710 TGGCACATTGTGTTTTAGCAAAA 58.492 34.783 17.64 0.00 35.75 2.44
2586 3108 4.128925 TGGCACATTGTGTTTTAGCAAA 57.871 36.364 17.64 0.00 35.75 3.68
2587 3109 3.808466 TGGCACATTGTGTTTTAGCAA 57.192 38.095 17.64 0.00 35.75 3.91
2603 3125 5.239306 GCTTAGATGTGCAATACTTATGGCA 59.761 40.000 0.00 0.00 40.19 4.92
2604 3126 5.335191 GGCTTAGATGTGCAATACTTATGGC 60.335 44.000 0.00 0.00 33.16 4.40
2605 3127 5.106948 CGGCTTAGATGTGCAATACTTATGG 60.107 44.000 0.00 0.00 0.00 2.74
2606 3128 5.466728 ACGGCTTAGATGTGCAATACTTATG 59.533 40.000 0.00 0.00 0.00 1.90
2607 3129 5.611374 ACGGCTTAGATGTGCAATACTTAT 58.389 37.500 0.00 0.00 0.00 1.73
2608 3130 5.018539 ACGGCTTAGATGTGCAATACTTA 57.981 39.130 0.00 0.00 0.00 2.24
2609 3131 3.873910 ACGGCTTAGATGTGCAATACTT 58.126 40.909 0.00 0.00 0.00 2.24
2610 3132 3.543680 ACGGCTTAGATGTGCAATACT 57.456 42.857 0.00 0.00 0.00 2.12
2611 3133 4.750098 ACATACGGCTTAGATGTGCAATAC 59.250 41.667 0.00 0.00 32.62 1.89
2612 3134 4.956085 ACATACGGCTTAGATGTGCAATA 58.044 39.130 0.00 0.00 32.62 1.90
2613 3135 3.808728 ACATACGGCTTAGATGTGCAAT 58.191 40.909 0.00 0.00 32.62 3.56
2614 3136 3.194861 GACATACGGCTTAGATGTGCAA 58.805 45.455 0.00 0.00 33.99 4.08
2615 3137 2.167487 TGACATACGGCTTAGATGTGCA 59.833 45.455 0.00 0.00 33.99 4.57
2616 3138 2.821546 TGACATACGGCTTAGATGTGC 58.178 47.619 0.00 0.00 33.99 4.57
2617 3139 8.757164 TTATAATGACATACGGCTTAGATGTG 57.243 34.615 0.00 0.00 33.99 3.21
2618 3140 8.585881 ACTTATAATGACATACGGCTTAGATGT 58.414 33.333 0.00 0.00 36.52 3.06
2619 3141 8.988064 ACTTATAATGACATACGGCTTAGATG 57.012 34.615 0.00 0.00 0.00 2.90
2623 3145 9.146984 GCAATACTTATAATGACATACGGCTTA 57.853 33.333 0.00 0.00 0.00 3.09
2624 3146 7.659799 TGCAATACTTATAATGACATACGGCTT 59.340 33.333 0.00 0.00 0.00 4.35
2625 3147 7.117812 GTGCAATACTTATAATGACATACGGCT 59.882 37.037 0.00 0.00 0.00 5.52
2626 3148 7.095397 TGTGCAATACTTATAATGACATACGGC 60.095 37.037 0.00 0.00 0.00 5.68
2627 3149 8.305441 TGTGCAATACTTATAATGACATACGG 57.695 34.615 0.00 0.00 0.00 4.02
2628 3150 9.958285 GATGTGCAATACTTATAATGACATACG 57.042 33.333 0.00 0.00 0.00 3.06
2634 3156 9.219603 GGCTTAGATGTGCAATACTTATAATGA 57.780 33.333 0.00 0.00 0.00 2.57
2635 3157 9.002600 TGGCTTAGATGTGCAATACTTATAATG 57.997 33.333 0.00 0.00 0.00 1.90
2636 3158 9.745018 ATGGCTTAGATGTGCAATACTTATAAT 57.255 29.630 0.00 0.00 0.00 1.28
2639 3161 9.170734 CATATGGCTTAGATGTGCAATACTTAT 57.829 33.333 0.00 0.00 29.08 1.73
2640 3162 8.156820 ACATATGGCTTAGATGTGCAATACTTA 58.843 33.333 7.80 0.00 39.63 2.24
2641 3163 7.000472 ACATATGGCTTAGATGTGCAATACTT 59.000 34.615 7.80 0.00 39.63 2.24
2642 3164 6.537355 ACATATGGCTTAGATGTGCAATACT 58.463 36.000 7.80 0.00 39.63 2.12
2643 3165 6.808008 ACATATGGCTTAGATGTGCAATAC 57.192 37.500 7.80 0.00 39.63 1.89
2644 3166 9.519191 AATAACATATGGCTTAGATGTGCAATA 57.481 29.630 7.80 0.00 40.18 1.90
2645 3167 8.301720 CAATAACATATGGCTTAGATGTGCAAT 58.698 33.333 7.80 0.00 40.18 3.56
2646 3168 7.501892 TCAATAACATATGGCTTAGATGTGCAA 59.498 33.333 7.80 0.00 40.18 4.08
2647 3169 6.997476 TCAATAACATATGGCTTAGATGTGCA 59.003 34.615 7.80 0.00 40.18 4.57
2648 3170 7.439157 TCAATAACATATGGCTTAGATGTGC 57.561 36.000 7.80 0.00 40.18 4.57
2656 3178 8.134895 CCGTGTAAAATCAATAACATATGGCTT 58.865 33.333 7.80 0.00 0.00 4.35
2657 3179 7.500892 TCCGTGTAAAATCAATAACATATGGCT 59.499 33.333 7.80 0.00 0.00 4.75
2658 3180 7.644490 TCCGTGTAAAATCAATAACATATGGC 58.356 34.615 7.80 0.00 0.00 4.40
2659 3181 9.051679 TCTCCGTGTAAAATCAATAACATATGG 57.948 33.333 7.80 0.00 0.00 2.74
2663 3185 9.173021 TGAATCTCCGTGTAAAATCAATAACAT 57.827 29.630 0.00 0.00 0.00 2.71
2664 3186 8.554835 TGAATCTCCGTGTAAAATCAATAACA 57.445 30.769 0.00 0.00 0.00 2.41
2665 3187 9.438291 CATGAATCTCCGTGTAAAATCAATAAC 57.562 33.333 0.00 0.00 0.00 1.89
2666 3188 9.173021 ACATGAATCTCCGTGTAAAATCAATAA 57.827 29.630 0.00 0.00 34.76 1.40
2667 3189 8.611757 CACATGAATCTCCGTGTAAAATCAATA 58.388 33.333 0.00 0.00 34.76 1.90
2668 3190 7.415541 CCACATGAATCTCCGTGTAAAATCAAT 60.416 37.037 0.00 0.00 34.76 2.57
2669 3191 6.128035 CCACATGAATCTCCGTGTAAAATCAA 60.128 38.462 0.00 0.00 34.76 2.57
2670 3192 5.353956 CCACATGAATCTCCGTGTAAAATCA 59.646 40.000 0.00 0.00 34.76 2.57
2671 3193 5.220854 CCCACATGAATCTCCGTGTAAAATC 60.221 44.000 0.00 0.00 34.76 2.17
2672 3194 4.640201 CCCACATGAATCTCCGTGTAAAAT 59.360 41.667 0.00 0.00 34.76 1.82
2673 3195 4.006989 CCCACATGAATCTCCGTGTAAAA 58.993 43.478 0.00 0.00 34.76 1.52
2674 3196 3.008594 ACCCACATGAATCTCCGTGTAAA 59.991 43.478 0.00 0.00 34.76 2.01
2675 3197 2.569853 ACCCACATGAATCTCCGTGTAA 59.430 45.455 0.00 0.00 34.76 2.41
2676 3198 2.184533 ACCCACATGAATCTCCGTGTA 58.815 47.619 0.00 0.00 34.76 2.90
2677 3199 0.984230 ACCCACATGAATCTCCGTGT 59.016 50.000 0.00 0.00 36.78 4.49
2678 3200 2.979814 TACCCACATGAATCTCCGTG 57.020 50.000 0.00 0.00 0.00 4.94
2679 3201 4.503714 AAATACCCACATGAATCTCCGT 57.496 40.909 0.00 0.00 0.00 4.69
2680 3202 4.275936 GGAAAATACCCACATGAATCTCCG 59.724 45.833 0.00 0.00 0.00 4.63
2681 3203 5.449553 AGGAAAATACCCACATGAATCTCC 58.550 41.667 0.00 0.00 0.00 3.71
2682 3204 7.410120 AAAGGAAAATACCCACATGAATCTC 57.590 36.000 0.00 0.00 0.00 2.75
2683 3205 7.797121 AAAAGGAAAATACCCACATGAATCT 57.203 32.000 0.00 0.00 0.00 2.40
2684 3206 8.314021 AGAAAAAGGAAAATACCCACATGAATC 58.686 33.333 0.00 0.00 0.00 2.52
2685 3207 8.206126 AGAAAAAGGAAAATACCCACATGAAT 57.794 30.769 0.00 0.00 0.00 2.57
2686 3208 7.610580 AGAAAAAGGAAAATACCCACATGAA 57.389 32.000 0.00 0.00 0.00 2.57
2687 3209 7.610580 AAGAAAAAGGAAAATACCCACATGA 57.389 32.000 0.00 0.00 0.00 3.07
2688 3210 9.942850 ATAAAGAAAAAGGAAAATACCCACATG 57.057 29.630 0.00 0.00 0.00 3.21
2690 3212 9.374711 AGATAAAGAAAAAGGAAAATACCCACA 57.625 29.630 0.00 0.00 0.00 4.17
2718 3240 9.283768 TCTAAGTGACTCAATCAAGCATAAAAA 57.716 29.630 0.00 0.00 39.72 1.94
2719 3241 8.846943 TCTAAGTGACTCAATCAAGCATAAAA 57.153 30.769 0.00 0.00 39.72 1.52
2723 3245 9.703892 GTATATCTAAGTGACTCAATCAAGCAT 57.296 33.333 0.00 0.00 39.72 3.79
2724 3246 8.695456 TGTATATCTAAGTGACTCAATCAAGCA 58.305 33.333 0.00 0.00 39.72 3.91
2725 3247 9.534565 TTGTATATCTAAGTGACTCAATCAAGC 57.465 33.333 0.00 0.00 39.72 4.01
2748 3270 9.302345 CACATCTAGACGTGTCTTAATTATTGT 57.698 33.333 10.77 0.00 40.93 2.71
2749 3271 8.269424 GCACATCTAGACGTGTCTTAATTATTG 58.731 37.037 19.27 0.00 40.93 1.90
2750 3272 7.979537 TGCACATCTAGACGTGTCTTAATTATT 59.020 33.333 19.27 0.00 40.93 1.40
2751 3273 7.489160 TGCACATCTAGACGTGTCTTAATTAT 58.511 34.615 19.27 0.00 40.93 1.28
2752 3274 6.859017 TGCACATCTAGACGTGTCTTAATTA 58.141 36.000 19.27 0.00 40.93 1.40
2753 3275 5.720202 TGCACATCTAGACGTGTCTTAATT 58.280 37.500 19.27 0.00 40.93 1.40
2754 3276 5.105716 ACTGCACATCTAGACGTGTCTTAAT 60.106 40.000 19.27 0.00 40.93 1.40
2755 3277 4.217767 ACTGCACATCTAGACGTGTCTTAA 59.782 41.667 19.27 1.56 40.93 1.85
2756 3278 3.756963 ACTGCACATCTAGACGTGTCTTA 59.243 43.478 19.27 4.45 40.93 2.10
2757 3279 2.558795 ACTGCACATCTAGACGTGTCTT 59.441 45.455 19.27 2.17 40.93 3.01
2758 3280 2.163509 ACTGCACATCTAGACGTGTCT 58.836 47.619 19.27 7.77 43.40 3.41
2759 3281 2.638556 ACTGCACATCTAGACGTGTC 57.361 50.000 19.27 12.33 35.51 3.67
2760 3282 4.720649 ATAACTGCACATCTAGACGTGT 57.279 40.909 19.27 6.97 35.51 4.49
2761 3283 5.859114 GGATATAACTGCACATCTAGACGTG 59.141 44.000 14.50 14.50 36.18 4.49
2762 3284 5.047943 GGGATATAACTGCACATCTAGACGT 60.048 44.000 0.00 0.00 0.00 4.34
2763 3285 5.403246 GGGATATAACTGCACATCTAGACG 58.597 45.833 0.00 0.00 0.00 4.18
2764 3286 5.482175 AGGGGATATAACTGCACATCTAGAC 59.518 44.000 0.00 0.00 0.00 2.59
2765 3287 5.655394 AGGGGATATAACTGCACATCTAGA 58.345 41.667 0.00 0.00 0.00 2.43
2766 3288 5.719085 AGAGGGGATATAACTGCACATCTAG 59.281 44.000 0.00 0.00 0.00 2.43
2767 3289 5.655394 AGAGGGGATATAACTGCACATCTA 58.345 41.667 0.00 0.00 0.00 1.98
2768 3290 4.497516 AGAGGGGATATAACTGCACATCT 58.502 43.478 0.00 0.00 0.00 2.90
2769 3291 4.284490 TGAGAGGGGATATAACTGCACATC 59.716 45.833 0.00 0.00 0.00 3.06
2770 3292 4.234550 TGAGAGGGGATATAACTGCACAT 58.765 43.478 0.00 0.00 0.00 3.21
2771 3293 3.653164 TGAGAGGGGATATAACTGCACA 58.347 45.455 0.00 0.00 0.00 4.57
2772 3294 4.899352 ATGAGAGGGGATATAACTGCAC 57.101 45.455 0.00 0.00 0.00 4.57
2773 3295 6.025539 ACATATGAGAGGGGATATAACTGCA 58.974 40.000 10.38 0.00 0.00 4.41
2820 3342 0.179034 AGCTTCATTCCATCCCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
2839 3361 4.895668 ATTTTACTGGTTCCCGTGAGTA 57.104 40.909 0.00 0.00 0.00 2.59
2845 3367 4.023193 GGCATGATATTTTACTGGTTCCCG 60.023 45.833 0.00 0.00 0.00 5.14
2848 3370 5.751243 ACGGCATGATATTTTACTGGTTC 57.249 39.130 0.00 0.00 0.00 3.62
2865 3387 1.523154 GATCCCAGCACAAAACGGCA 61.523 55.000 0.00 0.00 0.00 5.69
2866 3388 1.212751 GATCCCAGCACAAAACGGC 59.787 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.