Multiple sequence alignment - TraesCS2D01G308100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G308100 chr2D 100.000 7300 0 0 1 7300 395136695 395129396 0.000000e+00 13481.0
1 TraesCS2D01G308100 chr2D 95.109 184 7 2 2792 2975 442882397 442882578 9.270000e-74 289.0
2 TraesCS2D01G308100 chr2D 85.393 89 10 3 1220 1305 608920136 608920048 1.010000e-13 89.8
3 TraesCS2D01G308100 chr2D 82.292 96 15 2 4386 4480 52051379 52051473 1.690000e-11 82.4
4 TraesCS2D01G308100 chr2A 92.586 2428 92 34 406 2788 533469555 533467171 0.000000e+00 3406.0
5 TraesCS2D01G308100 chr2A 95.993 1697 52 4 4480 6165 533465810 533464119 0.000000e+00 2743.0
6 TraesCS2D01G308100 chr2A 91.506 1142 44 15 6162 7280 533464073 533462962 0.000000e+00 1522.0
7 TraesCS2D01G308100 chr2A 95.682 880 34 3 2976 3853 533467181 533466304 0.000000e+00 1411.0
8 TraesCS2D01G308100 chr2A 94.083 507 23 4 3886 4387 533466312 533465808 0.000000e+00 763.0
9 TraesCS2D01G308100 chr2A 90.000 420 14 11 1 400 533471663 533471252 1.090000e-142 518.0
10 TraesCS2D01G308100 chr2A 94.149 188 7 4 2792 2979 639066128 639065945 4.310000e-72 283.0
11 TraesCS2D01G308100 chr2A 87.671 73 9 0 1220 1292 740852028 740851956 1.300000e-12 86.1
12 TraesCS2D01G308100 chr2B 96.550 1681 43 5 4495 6165 468240257 468238582 0.000000e+00 2769.0
13 TraesCS2D01G308100 chr2B 91.076 2073 106 42 731 2788 468243754 468241746 0.000000e+00 2730.0
14 TraesCS2D01G308100 chr2B 93.173 996 47 7 3404 4387 468241259 468240273 0.000000e+00 1443.0
15 TraesCS2D01G308100 chr2B 85.306 735 61 29 1 714 468244517 468243809 0.000000e+00 715.0
16 TraesCS2D01G308100 chr2B 89.976 419 18 11 6435 6849 468238240 468237842 3.020000e-143 520.0
17 TraesCS2D01G308100 chr2B 95.122 287 10 2 2976 3262 468241756 468241474 4.020000e-122 449.0
18 TraesCS2D01G308100 chr2B 95.122 287 9 4 6166 6450 468238538 468238255 1.440000e-121 448.0
19 TraesCS2D01G308100 chr2B 92.021 188 14 1 3232 3419 468241473 468241287 5.620000e-66 263.0
20 TraesCS2D01G308100 chr3A 80.173 1155 229 0 4951 6105 100887466 100886312 0.000000e+00 865.0
21 TraesCS2D01G308100 chr3A 88.104 269 30 2 3431 3698 100888464 100888197 1.180000e-82 318.0
22 TraesCS2D01G308100 chr3A 93.401 197 10 3 2789 2984 724319112 724318918 9.270000e-74 289.0
23 TraesCS2D01G308100 chr3A 85.787 197 28 0 2248 2444 100889636 100889440 7.420000e-50 209.0
24 TraesCS2D01G308100 chr3D 80.195 1131 224 0 4954 6084 84571186 84570056 0.000000e+00 848.0
25 TraesCS2D01G308100 chr3D 80.195 1131 224 0 4954 6084 84588982 84587852 0.000000e+00 848.0
26 TraesCS2D01G308100 chr3D 85.906 298 37 5 3403 3698 84572208 84571914 5.500000e-81 313.0
27 TraesCS2D01G308100 chr3D 85.906 298 37 5 3403 3698 84590004 84589710 5.500000e-81 313.0
28 TraesCS2D01G308100 chr3D 84.516 310 43 5 3403 3710 84508789 84508483 1.190000e-77 302.0
29 TraesCS2D01G308100 chr3D 95.055 182 7 2 2794 2975 153512403 153512224 1.200000e-72 285.0
30 TraesCS2D01G308100 chr3D 86.294 197 27 0 2248 2444 84573246 84573050 1.600000e-51 215.0
31 TraesCS2D01G308100 chr3D 83.246 191 32 0 2254 2444 84509987 84509797 7.530000e-40 176.0
32 TraesCS2D01G308100 chr3B 79.654 1155 231 4 4953 6105 133195505 133196657 0.000000e+00 828.0
33 TraesCS2D01G308100 chr3B 87.500 272 32 2 3428 3698 133194504 133194774 5.500000e-81 313.0
34 TraesCS2D01G308100 chr3B 85.052 194 29 0 2248 2441 133192549 133192742 1.610000e-46 198.0
35 TraesCS2D01G308100 chr3B 89.691 97 10 0 4384 4480 696979166 696979262 2.770000e-24 124.0
36 TraesCS2D01G308100 chr4A 93.846 195 10 2 2786 2980 662286861 662287053 7.160000e-75 292.0
37 TraesCS2D01G308100 chr5D 95.082 183 7 2 2793 2975 62177278 62177098 3.330000e-73 287.0
38 TraesCS2D01G308100 chr5D 90.217 92 9 0 4389 4480 142904992 142905083 3.580000e-23 121.0
39 TraesCS2D01G308100 chr5D 84.507 71 11 0 1220 1290 503085035 503084965 3.650000e-08 71.3
40 TraesCS2D01G308100 chr1A 94.652 187 7 3 2789 2975 82526067 82525884 3.330000e-73 287.0
41 TraesCS2D01G308100 chr1A 85.455 110 12 4 4376 4483 516728938 516728831 2.150000e-20 111.0
42 TraesCS2D01G308100 chr7B 94.149 188 8 3 2788 2975 700410734 700410918 4.310000e-72 283.0
43 TraesCS2D01G308100 chr7B 90.196 102 8 2 4379 4480 13866717 13866618 1.650000e-26 132.0
44 TraesCS2D01G308100 chr7B 88.660 97 10 1 4390 4486 569937970 569937875 4.630000e-22 117.0
45 TraesCS2D01G308100 chr7B 81.132 106 17 3 4379 4483 685046584 685046481 1.690000e-11 82.4
46 TraesCS2D01G308100 chr6B 92.632 190 12 2 2793 2982 502718598 502718411 9.330000e-69 272.0
47 TraesCS2D01G308100 chr6B 80.769 104 14 6 4380 4480 14820572 14820672 7.850000e-10 76.8
48 TraesCS2D01G308100 chr5B 91.304 92 8 0 4389 4480 164398667 164398758 7.690000e-25 126.0
49 TraesCS2D01G308100 chr5B 85.915 71 10 0 1220 1290 631894121 631894051 7.850000e-10 76.8
50 TraesCS2D01G308100 chr5A 85.915 71 10 0 1220 1290 631513782 631513712 7.850000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G308100 chr2D 395129396 395136695 7299 True 13481.000000 13481 100.000000 1 7300 1 chr2D.!!$R1 7299
1 TraesCS2D01G308100 chr2A 533462962 533471663 8701 True 1727.166667 3406 93.308333 1 7280 6 chr2A.!!$R3 7279
2 TraesCS2D01G308100 chr2B 468237842 468244517 6675 True 1167.125000 2769 92.293250 1 6849 8 chr2B.!!$R1 6848
3 TraesCS2D01G308100 chr3A 100886312 100889636 3324 True 464.000000 865 84.688000 2248 6105 3 chr3A.!!$R2 3857
4 TraesCS2D01G308100 chr3D 84587852 84590004 2152 True 580.500000 848 83.050500 3403 6084 2 chr3D.!!$R4 2681
5 TraesCS2D01G308100 chr3D 84570056 84573246 3190 True 458.666667 848 84.131667 2248 6084 3 chr3D.!!$R3 3836
6 TraesCS2D01G308100 chr3D 84508483 84509987 1504 True 239.000000 302 83.881000 2254 3710 2 chr3D.!!$R2 1456
7 TraesCS2D01G308100 chr3B 133192549 133196657 4108 False 446.333333 828 84.068667 2248 6105 3 chr3B.!!$F2 3857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 152 0.251121 TCAACCCATGTCGCCACAAT 60.251 50.0 0.00 0.00 35.64 2.71 F
864 2647 0.326238 AATCTCCCGTGCCCTTCCTA 60.326 55.0 0.00 0.00 0.00 2.94 F
1909 3720 0.162507 CGCTCTGAAAACTCTGTGCG 59.837 55.0 11.91 11.91 41.91 5.34 F
2943 4761 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 F
2954 4772 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.0 0.00 0.00 38.07 3.25 F
2963 4781 0.243365 CAGCTTTACCAATGCGCCAA 59.757 50.0 4.18 0.00 36.73 4.52 F
4401 7890 0.399949 ATAATGCTCCCTCCGTCCCA 60.400 55.0 0.00 0.00 0.00 4.37 F
4976 8535 0.179034 GAGGCGCTCCATCCAAGATT 60.179 55.0 7.64 0.00 33.74 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 3699 0.162507 CACAGAGTTTTCAGAGCGCG 59.837 55.000 0.00 0.00 0.00 6.86 R
2856 4674 0.171903 GCTGCGTACTAAAGACCCGA 59.828 55.000 0.00 0.00 0.00 5.14 R
2966 4784 0.175989 GGACTGTAAGCGAAGGGGAG 59.824 60.000 0.00 0.00 37.60 4.30 R
4387 7876 0.544697 TATTTTGGGACGGAGGGAGC 59.455 55.000 0.00 0.00 0.00 4.70 R
4451 7940 1.083489 CCGAAAATAAGTGCCGCTGA 58.917 50.000 0.00 0.00 0.00 4.26 R
4454 7943 1.268539 CCATCCGAAAATAAGTGCCGC 60.269 52.381 0.00 0.00 0.00 6.53 R
6221 9832 0.329596 GCCTGGTGAGAATCCCAACT 59.670 55.000 0.00 0.00 35.50 3.16 R
6663 10307 0.455633 CGTTTGGAAGCAGCTGCATC 60.456 55.000 38.24 34.37 45.16 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 149 0.392998 ATCTCAACCCATGTCGCCAC 60.393 55.000 0.00 0.00 0.00 5.01
146 152 0.251121 TCAACCCATGTCGCCACAAT 60.251 50.000 0.00 0.00 35.64 2.71
147 153 1.003696 TCAACCCATGTCGCCACAATA 59.996 47.619 0.00 0.00 35.64 1.90
149 155 1.459450 ACCCATGTCGCCACAATAAC 58.541 50.000 0.00 0.00 35.64 1.89
150 156 1.004277 ACCCATGTCGCCACAATAACT 59.996 47.619 0.00 0.00 35.64 2.24
151 157 2.237643 ACCCATGTCGCCACAATAACTA 59.762 45.455 0.00 0.00 35.64 2.24
152 158 2.872245 CCCATGTCGCCACAATAACTAG 59.128 50.000 0.00 0.00 35.64 2.57
153 159 2.872245 CCATGTCGCCACAATAACTAGG 59.128 50.000 0.00 0.00 35.64 3.02
154 160 3.431626 CCATGTCGCCACAATAACTAGGA 60.432 47.826 0.00 0.00 35.64 2.94
155 161 3.520290 TGTCGCCACAATAACTAGGAG 57.480 47.619 0.00 0.00 0.00 3.69
157 163 4.018490 TGTCGCCACAATAACTAGGAGTA 58.982 43.478 0.00 0.00 0.00 2.59
159 165 5.829391 TGTCGCCACAATAACTAGGAGTATA 59.171 40.000 0.00 0.00 0.00 1.47
161 167 5.242393 TCGCCACAATAACTAGGAGTATACC 59.758 44.000 0.00 0.00 0.00 2.73
162 168 5.243283 CGCCACAATAACTAGGAGTATACCT 59.757 44.000 0.00 0.00 43.32 3.08
163 169 6.569994 CGCCACAATAACTAGGAGTATACCTC 60.570 46.154 0.00 0.00 41.00 3.85
172 178 2.955342 GAGTATACCTCCTCTCCGGT 57.045 55.000 0.00 0.00 37.31 5.28
173 179 3.226682 GAGTATACCTCCTCTCCGGTT 57.773 52.381 0.00 0.00 34.76 4.44
174 180 2.885894 GAGTATACCTCCTCTCCGGTTG 59.114 54.545 0.00 0.00 34.76 3.77
175 181 1.962100 GTATACCTCCTCTCCGGTTGG 59.038 57.143 0.00 2.26 34.76 3.77
247 256 0.651031 GCCGGCGTCTTTATCTGAAC 59.349 55.000 12.58 0.00 0.00 3.18
248 257 2.004583 CCGGCGTCTTTATCTGAACA 57.995 50.000 6.01 0.00 0.00 3.18
249 258 1.927174 CCGGCGTCTTTATCTGAACAG 59.073 52.381 6.01 0.00 0.00 3.16
250 259 2.607187 CGGCGTCTTTATCTGAACAGT 58.393 47.619 0.00 0.00 0.00 3.55
251 260 3.428452 CCGGCGTCTTTATCTGAACAGTA 60.428 47.826 6.01 0.00 0.00 2.74
327 350 2.807837 CGTTGTTTTCTTCCCTACCGGT 60.808 50.000 13.98 13.98 0.00 5.28
355 382 6.676456 GCATCGTCAGCTTCACATATTTTCTT 60.676 38.462 0.00 0.00 0.00 2.52
667 2406 6.074835 GGAAATTTTCTTGTTCTTCTCGCAAC 60.075 38.462 8.93 0.00 0.00 4.17
668 2407 4.955925 TTTTCTTGTTCTTCTCGCAACA 57.044 36.364 0.00 0.00 0.00 3.33
669 2408 4.955925 TTTCTTGTTCTTCTCGCAACAA 57.044 36.364 0.00 0.00 39.61 2.83
670 2409 4.955925 TTCTTGTTCTTCTCGCAACAAA 57.044 36.364 0.00 0.00 40.96 2.83
671 2410 4.955925 TCTTGTTCTTCTCGCAACAAAA 57.044 36.364 0.00 0.00 40.96 2.44
775 2551 3.192844 TGTGTTCCAGACGGATCTAAGAC 59.807 47.826 0.00 0.00 42.41 3.01
835 2618 1.006832 GCGCCACTGATACGATTTGT 58.993 50.000 0.00 0.00 0.00 2.83
864 2647 0.326238 AATCTCCCGTGCCCTTCCTA 60.326 55.000 0.00 0.00 0.00 2.94
891 2676 1.010580 TTGTTTCGCGCTTTCACTCA 58.989 45.000 5.56 0.00 0.00 3.41
905 2690 5.106908 GCTTTCACTCACTACCATTTCTGTC 60.107 44.000 0.00 0.00 0.00 3.51
944 2729 4.101448 CGCAGGGACCCAAGGAGG 62.101 72.222 14.60 0.00 37.03 4.30
1298 3093 1.099879 TACGAGTAAGCGCCCCTCTC 61.100 60.000 2.29 6.60 33.86 3.20
1319 3114 3.077556 CCCTCCCCGTCTCCACTG 61.078 72.222 0.00 0.00 0.00 3.66
1368 3163 1.656095 GAGAAAGTTCGTCGGCATCTG 59.344 52.381 0.00 0.00 0.00 2.90
1630 3432 6.265196 ACAAACCACAAAGCTATCATTGAAGA 59.735 34.615 2.92 0.00 0.00 2.87
1631 3433 6.899393 AACCACAAAGCTATCATTGAAGAA 57.101 33.333 2.92 0.00 0.00 2.52
1632 3434 6.899393 ACCACAAAGCTATCATTGAAGAAA 57.101 33.333 2.92 0.00 0.00 2.52
1633 3435 6.917533 ACCACAAAGCTATCATTGAAGAAAG 58.082 36.000 2.92 0.00 0.00 2.62
1634 3436 6.071728 ACCACAAAGCTATCATTGAAGAAAGG 60.072 38.462 2.92 0.00 0.00 3.11
1635 3437 6.327934 CACAAAGCTATCATTGAAGAAAGGG 58.672 40.000 2.92 0.00 0.00 3.95
1814 3619 6.359087 GCATAAGTTCGATGATTGAATTCTGC 59.641 38.462 7.05 4.50 0.00 4.26
1866 3672 4.885413 TGCACATGGTAATACCGTATACC 58.115 43.478 3.50 8.90 42.58 2.73
1888 3699 4.092968 CCTACTTGGCGTGTTTCATTACTC 59.907 45.833 0.00 0.00 0.00 2.59
1909 3720 0.162507 CGCTCTGAAAACTCTGTGCG 59.837 55.000 11.91 11.91 41.91 5.34
2008 3819 2.299582 TGTTGTCCTGAAATGGGCATTG 59.700 45.455 0.00 0.00 41.79 2.82
2285 4098 4.559153 ACTTCACAGCATTTTTGGCATAC 58.441 39.130 0.00 0.00 0.00 2.39
2304 4117 0.249657 CGGAGGCTGCAATCTAGTCC 60.250 60.000 6.86 0.00 0.00 3.85
2399 4212 9.937175 GTTAAAGCATATCTTAATGGAGTTGAC 57.063 33.333 0.00 0.00 33.88 3.18
2435 4248 1.517242 CTCCCAGCACACTCTTTGTC 58.483 55.000 0.00 0.00 35.67 3.18
2490 4303 9.439500 TTTATTACGTTTTGAGTAATACCTGCT 57.561 29.630 0.00 0.00 42.95 4.24
2502 4315 9.742144 TGAGTAATACCTGCTTTATGGTAAAAA 57.258 29.630 0.00 0.00 41.48 1.94
2585 4399 3.118884 ACCTCTGAAATGATTTGCATGCC 60.119 43.478 16.68 0.00 37.28 4.40
2602 4416 1.278985 TGCCTGTCACAGAACCTATGG 59.721 52.381 6.30 0.00 32.44 2.74
2603 4417 2.014068 GCCTGTCACAGAACCTATGGC 61.014 57.143 6.30 0.00 32.44 4.40
2616 4430 2.108250 ACCTATGGCACCTTTTCAGTGT 59.892 45.455 0.00 0.00 37.56 3.55
2705 4523 7.551617 TCGGAGGTATTAGGTTTCAGAATTTTC 59.448 37.037 0.00 0.00 0.00 2.29
2707 4525 7.201705 GGAGGTATTAGGTTTCAGAATTTTCGG 60.202 40.741 0.00 0.00 0.00 4.30
2757 4575 3.760151 TCCATGATTTCTTTCCAGCTGTG 59.240 43.478 13.81 4.33 0.00 3.66
2758 4576 3.508762 CATGATTTCTTTCCAGCTGTGC 58.491 45.455 13.81 0.00 0.00 4.57
2775 4593 3.221771 TGTGCTGATTTGCCTAAACTGT 58.778 40.909 0.00 0.00 0.00 3.55
2797 4615 6.953101 TGTTGCTTACAGTCCATATAAAGGA 58.047 36.000 0.00 0.00 31.68 3.36
2798 4616 7.047891 TGTTGCTTACAGTCCATATAAAGGAG 58.952 38.462 0.00 0.00 35.42 3.69
2799 4617 5.611374 TGCTTACAGTCCATATAAAGGAGC 58.389 41.667 0.00 0.00 35.42 4.70
2800 4618 5.130311 TGCTTACAGTCCATATAAAGGAGCA 59.870 40.000 0.00 0.00 35.42 4.26
2801 4619 5.698545 GCTTACAGTCCATATAAAGGAGCAG 59.301 44.000 0.00 0.00 35.42 4.24
2802 4620 4.078639 ACAGTCCATATAAAGGAGCAGC 57.921 45.455 0.00 0.00 35.42 5.25
2803 4621 3.181450 ACAGTCCATATAAAGGAGCAGCC 60.181 47.826 0.00 0.00 35.42 4.85
2804 4622 2.373502 AGTCCATATAAAGGAGCAGCCC 59.626 50.000 0.00 0.00 35.42 5.19
2805 4623 1.347707 TCCATATAAAGGAGCAGCCCG 59.652 52.381 0.00 0.00 37.37 6.13
2806 4624 1.611673 CCATATAAAGGAGCAGCCCGG 60.612 57.143 0.00 0.00 37.37 5.73
2807 4625 1.072331 CATATAAAGGAGCAGCCCGGT 59.928 52.381 0.00 0.00 37.37 5.28
2808 4626 0.468226 TATAAAGGAGCAGCCCGGTG 59.532 55.000 0.00 0.00 37.37 4.94
2809 4627 2.893682 ATAAAGGAGCAGCCCGGTGC 62.894 60.000 10.82 10.82 44.35 5.01
2814 4632 4.666253 AGCAGCCCGGTGCATGTT 62.666 61.111 19.95 8.32 46.60 2.71
2815 4633 2.749839 GCAGCCCGGTGCATGTTA 60.750 61.111 13.70 0.00 43.41 2.41
2816 4634 2.764314 GCAGCCCGGTGCATGTTAG 61.764 63.158 13.70 0.00 43.41 2.34
2817 4635 2.438434 AGCCCGGTGCATGTTAGC 60.438 61.111 15.92 1.74 44.83 3.09
2818 4636 2.438434 GCCCGGTGCATGTTAGCT 60.438 61.111 9.72 0.00 40.77 3.32
2819 4637 2.472909 GCCCGGTGCATGTTAGCTC 61.473 63.158 9.72 0.00 40.77 4.09
2820 4638 1.819632 CCCGGTGCATGTTAGCTCC 60.820 63.158 0.00 0.00 43.03 4.70
2821 4639 1.819632 CCGGTGCATGTTAGCTCCC 60.820 63.158 0.00 0.00 43.42 4.30
2822 4640 2.173669 CGGTGCATGTTAGCTCCCG 61.174 63.158 0.00 0.00 43.42 5.14
2823 4641 2.472909 GGTGCATGTTAGCTCCCGC 61.473 63.158 0.00 0.00 41.18 6.13
2825 4643 1.026718 GTGCATGTTAGCTCCCGCTT 61.027 55.000 0.00 0.00 46.47 4.68
2826 4644 1.026182 TGCATGTTAGCTCCCGCTTG 61.026 55.000 0.00 0.00 46.47 4.01
2827 4645 1.723870 CATGTTAGCTCCCGCTTGC 59.276 57.895 0.00 0.00 46.47 4.01
2828 4646 1.815421 ATGTTAGCTCCCGCTTGCG 60.815 57.895 8.14 8.14 46.47 4.85
2829 4647 3.865830 GTTAGCTCCCGCTTGCGC 61.866 66.667 9.71 0.00 46.47 6.09
2830 4648 4.386951 TTAGCTCCCGCTTGCGCA 62.387 61.111 5.66 5.66 46.47 6.09
2831 4649 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2847 4665 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2856 4674 3.171348 GGAAGGGTCCAGCCACTT 58.829 61.111 0.00 0.00 44.26 3.16
2857 4675 1.002011 GGAAGGGTCCAGCCACTTC 60.002 63.158 0.00 0.00 44.26 3.01
2858 4676 1.376037 GAAGGGTCCAGCCACTTCG 60.376 63.158 0.00 0.00 39.65 3.79
2859 4677 2.804828 GAAGGGTCCAGCCACTTCGG 62.805 65.000 0.00 0.00 39.65 4.30
2860 4678 4.410400 GGGTCCAGCCACTTCGGG 62.410 72.222 0.00 0.00 39.65 5.14
2862 4680 2.047179 GTCCAGCCACTTCGGGTC 60.047 66.667 0.00 0.00 44.26 4.46
2863 4681 2.203788 TCCAGCCACTTCGGGTCT 60.204 61.111 0.00 0.00 44.26 3.85
2864 4682 1.841556 TCCAGCCACTTCGGGTCTT 60.842 57.895 0.00 0.00 44.26 3.01
2865 4683 1.073199 CCAGCCACTTCGGGTCTTT 59.927 57.895 0.00 0.00 44.26 2.52
2866 4684 0.323629 CCAGCCACTTCGGGTCTTTA 59.676 55.000 0.00 0.00 44.26 1.85
2867 4685 1.676014 CCAGCCACTTCGGGTCTTTAG 60.676 57.143 0.00 0.00 44.26 1.85
2868 4686 1.002087 CAGCCACTTCGGGTCTTTAGT 59.998 52.381 0.00 0.00 44.26 2.24
2869 4687 2.232941 CAGCCACTTCGGGTCTTTAGTA 59.767 50.000 0.00 0.00 44.26 1.82
2870 4688 2.233186 AGCCACTTCGGGTCTTTAGTAC 59.767 50.000 0.00 0.00 44.26 2.73
2871 4689 2.872370 CCACTTCGGGTCTTTAGTACG 58.128 52.381 0.00 0.00 0.00 3.67
2872 4690 2.257034 CACTTCGGGTCTTTAGTACGC 58.743 52.381 0.00 0.00 0.00 4.42
2873 4691 1.888512 ACTTCGGGTCTTTAGTACGCA 59.111 47.619 0.00 0.00 0.00 5.24
2875 4693 0.171903 TCGGGTCTTTAGTACGCAGC 59.828 55.000 0.00 0.00 0.00 5.25
2881 4699 2.671888 GTCTTTAGTACGCAGCCTTTCC 59.328 50.000 0.00 0.00 0.00 3.13
2882 4700 2.007608 CTTTAGTACGCAGCCTTTCCC 58.992 52.381 0.00 0.00 0.00 3.97
2883 4701 1.272807 TTAGTACGCAGCCTTTCCCT 58.727 50.000 0.00 0.00 0.00 4.20
2885 4703 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2891 4709 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2892 4710 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2897 4715 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
2908 4726 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
2910 4728 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
2911 4729 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
2913 4731 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
2914 4732 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2915 4733 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2925 4743 1.004918 CAGGACTTGGACCCGTGAC 60.005 63.158 0.00 0.00 0.00 3.67
2928 4746 1.292541 GACTTGGACCCGTGACCTC 59.707 63.158 0.00 0.00 0.00 3.85
2929 4747 1.458777 ACTTGGACCCGTGACCTCA 60.459 57.895 0.00 0.00 0.00 3.86
2930 4748 0.836400 ACTTGGACCCGTGACCTCAT 60.836 55.000 0.00 0.00 0.00 2.90
2931 4749 0.391661 CTTGGACCCGTGACCTCATG 60.392 60.000 0.00 0.00 0.00 3.07
2942 4760 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2943 4761 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2945 4763 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2946 4764 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2948 4766 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2950 4768 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2951 4769 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2952 4770 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2953 4771 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2954 4772 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2955 4773 0.961019 CAAGGCAGCAGCTTTACCAA 59.039 50.000 0.00 0.00 38.07 3.67
2956 4774 1.547372 CAAGGCAGCAGCTTTACCAAT 59.453 47.619 0.00 0.00 38.07 3.16
2957 4775 1.180029 AGGCAGCAGCTTTACCAATG 58.820 50.000 0.00 0.00 41.70 2.82
2958 4776 0.459063 GGCAGCAGCTTTACCAATGC 60.459 55.000 0.00 0.00 41.70 3.56
2959 4777 0.799534 GCAGCAGCTTTACCAATGCG 60.800 55.000 0.00 0.00 43.41 4.73
2960 4778 0.799534 CAGCAGCTTTACCAATGCGC 60.800 55.000 0.00 0.00 43.41 6.09
2961 4779 1.517039 GCAGCTTTACCAATGCGCC 60.517 57.895 4.18 0.00 36.73 6.53
2962 4780 1.882311 CAGCTTTACCAATGCGCCA 59.118 52.632 4.18 0.00 36.73 5.69
2963 4781 0.243365 CAGCTTTACCAATGCGCCAA 59.757 50.000 4.18 0.00 36.73 4.52
2964 4782 0.527565 AGCTTTACCAATGCGCCAAG 59.472 50.000 4.18 0.00 36.73 3.61
2965 4783 0.458370 GCTTTACCAATGCGCCAAGG 60.458 55.000 4.18 6.21 0.00 3.61
2966 4784 0.458370 CTTTACCAATGCGCCAAGGC 60.458 55.000 4.18 0.00 37.85 4.35
2970 4788 3.830192 CAATGCGCCAAGGCTCCC 61.830 66.667 4.18 0.00 39.32 4.30
2981 4799 1.612442 AGGCTCCCCTTCGCTTACA 60.612 57.895 0.00 0.00 38.74 2.41
2982 4800 1.153349 GGCTCCCCTTCGCTTACAG 60.153 63.158 0.00 0.00 0.00 2.74
2993 4873 5.010719 CCCTTCGCTTACAGTCCTTCATATA 59.989 44.000 0.00 0.00 0.00 0.86
3072 5031 5.182760 AGTTGAAACTCTGCATCATCCTTTC 59.817 40.000 0.00 0.00 32.86 2.62
3268 6620 3.304928 GCTTGTCATTTGTGGAACTCTGG 60.305 47.826 0.00 0.00 38.04 3.86
3347 6699 4.165180 TGGAGTATAACCAGCTGGCAAATA 59.835 41.667 33.06 22.51 39.32 1.40
3360 6712 5.424895 AGCTGGCAAATAATTGGACCAATAA 59.575 36.000 20.11 0.00 37.02 1.40
3500 6926 1.212935 GAAGGTCCCATGGTGCATACT 59.787 52.381 11.73 0.00 0.00 2.12
3581 7007 8.102047 ACATGGAATTGGCTGAAATATTTCAAA 58.898 29.630 26.57 19.76 45.61 2.69
3727 7153 3.340814 TCCCTTCTCAAGCTGTTCATC 57.659 47.619 0.00 0.00 0.00 2.92
3729 7155 2.005451 CCTTCTCAAGCTGTTCATCCG 58.995 52.381 0.00 0.00 0.00 4.18
3736 7162 2.673368 CAAGCTGTTCATCCGTACCTTC 59.327 50.000 0.00 0.00 0.00 3.46
3747 7173 4.913335 TCCGTACCTTCATGTAGATGAC 57.087 45.455 1.27 0.00 38.38 3.06
3770 7196 5.641209 ACAATCTTGTCAGATGTGCTCTAAC 59.359 40.000 0.00 0.00 39.00 2.34
3860 7287 1.005037 TGTCCATCGACACTGGCAC 60.005 57.895 0.00 0.20 44.20 5.01
4009 7436 2.889045 GGGTCTAGGGGTGAAAACAAAC 59.111 50.000 0.00 0.00 0.00 2.93
4054 7481 5.694231 TGATCCATATGAAAAGGCGAATG 57.306 39.130 3.65 0.00 0.00 2.67
4055 7482 4.520111 TGATCCATATGAAAAGGCGAATGG 59.480 41.667 3.65 0.00 36.11 3.16
4061 7488 4.871933 ATGAAAAGGCGAATGGAAACTT 57.128 36.364 0.00 0.00 0.00 2.66
4131 7558 8.567285 ACTACTAGTTTGCAATTTGAGCTTAT 57.433 30.769 0.00 0.00 0.00 1.73
4321 7799 9.135189 TCCATATATTTTGAATGTGGAAGAAGG 57.865 33.333 0.00 0.00 40.44 3.46
4390 7879 9.555727 TGTGGAATAGGTAGTTAAATAATGCTC 57.444 33.333 0.00 0.00 0.00 4.26
4391 7880 9.000486 GTGGAATAGGTAGTTAAATAATGCTCC 58.000 37.037 0.00 0.00 0.00 4.70
4392 7881 8.161425 TGGAATAGGTAGTTAAATAATGCTCCC 58.839 37.037 0.00 0.00 0.00 4.30
4393 7882 8.383947 GGAATAGGTAGTTAAATAATGCTCCCT 58.616 37.037 0.00 0.00 0.00 4.20
4395 7884 6.189036 AGGTAGTTAAATAATGCTCCCTCC 57.811 41.667 0.00 0.00 0.00 4.30
4396 7885 4.995487 GGTAGTTAAATAATGCTCCCTCCG 59.005 45.833 0.00 0.00 0.00 4.63
4398 7887 4.704965 AGTTAAATAATGCTCCCTCCGTC 58.295 43.478 0.00 0.00 0.00 4.79
4400 7889 0.765510 AATAATGCTCCCTCCGTCCC 59.234 55.000 0.00 0.00 0.00 4.46
4401 7890 0.399949 ATAATGCTCCCTCCGTCCCA 60.400 55.000 0.00 0.00 0.00 4.37
4402 7891 0.619255 TAATGCTCCCTCCGTCCCAA 60.619 55.000 0.00 0.00 0.00 4.12
4403 7892 1.497309 AATGCTCCCTCCGTCCCAAA 61.497 55.000 0.00 0.00 0.00 3.28
4404 7893 1.497309 ATGCTCCCTCCGTCCCAAAA 61.497 55.000 0.00 0.00 0.00 2.44
4405 7894 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
4406 7895 0.544697 GCTCCCTCCGTCCCAAAATA 59.455 55.000 0.00 0.00 0.00 1.40
4407 7896 1.064979 GCTCCCTCCGTCCCAAAATAA 60.065 52.381 0.00 0.00 0.00 1.40
4408 7897 2.919228 CTCCCTCCGTCCCAAAATAAG 58.081 52.381 0.00 0.00 0.00 1.73
4409 7898 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4410 7899 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4411 7900 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4412 7901 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4413 7902 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4414 7903 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4415 7904 3.581332 TCCGTCCCAAAATAAGTGTCTCT 59.419 43.478 0.00 0.00 0.00 3.10
4416 7905 3.684788 CCGTCCCAAAATAAGTGTCTCTG 59.315 47.826 0.00 0.00 0.00 3.35
4417 7906 4.562757 CCGTCCCAAAATAAGTGTCTCTGA 60.563 45.833 0.00 0.00 0.00 3.27
4418 7907 5.178797 CGTCCCAAAATAAGTGTCTCTGAT 58.821 41.667 0.00 0.00 0.00 2.90
4419 7908 5.643777 CGTCCCAAAATAAGTGTCTCTGATT 59.356 40.000 0.00 0.00 0.00 2.57
4420 7909 6.149474 CGTCCCAAAATAAGTGTCTCTGATTT 59.851 38.462 0.00 0.00 38.49 2.17
4421 7910 7.308435 GTCCCAAAATAAGTGTCTCTGATTTG 58.692 38.462 0.00 0.00 37.31 2.32
4422 7911 6.434028 TCCCAAAATAAGTGTCTCTGATTTGG 59.566 38.462 13.90 13.90 37.31 3.28
4423 7912 6.209391 CCCAAAATAAGTGTCTCTGATTTGGT 59.791 38.462 16.82 0.00 37.31 3.67
4424 7913 7.393234 CCCAAAATAAGTGTCTCTGATTTGGTA 59.607 37.037 16.82 0.00 37.31 3.25
4425 7914 8.237267 CCAAAATAAGTGTCTCTGATTTGGTAC 58.763 37.037 13.21 0.00 37.31 3.34
4426 7915 8.783093 CAAAATAAGTGTCTCTGATTTGGTACA 58.217 33.333 0.00 0.00 37.31 2.90
4457 7946 5.607119 ACAACTTTGTACTAAATCAGCGG 57.393 39.130 0.00 0.00 40.16 5.52
4458 7947 4.083484 ACAACTTTGTACTAAATCAGCGGC 60.083 41.667 0.00 0.00 40.16 6.53
4459 7948 3.670625 ACTTTGTACTAAATCAGCGGCA 58.329 40.909 1.45 0.00 0.00 5.69
4460 7949 3.435671 ACTTTGTACTAAATCAGCGGCAC 59.564 43.478 1.45 0.00 0.00 5.01
4461 7950 3.328382 TTGTACTAAATCAGCGGCACT 57.672 42.857 1.45 0.00 0.00 4.40
4462 7951 3.328382 TGTACTAAATCAGCGGCACTT 57.672 42.857 1.45 0.00 0.00 3.16
4463 7952 4.459390 TGTACTAAATCAGCGGCACTTA 57.541 40.909 1.45 0.00 0.00 2.24
4464 7953 5.018539 TGTACTAAATCAGCGGCACTTAT 57.981 39.130 1.45 0.00 0.00 1.73
4465 7954 5.424757 TGTACTAAATCAGCGGCACTTATT 58.575 37.500 1.45 0.00 0.00 1.40
4466 7955 5.878116 TGTACTAAATCAGCGGCACTTATTT 59.122 36.000 1.45 5.10 36.43 1.40
4467 7956 5.897377 ACTAAATCAGCGGCACTTATTTT 57.103 34.783 1.45 0.00 34.69 1.82
4468 7957 5.880341 ACTAAATCAGCGGCACTTATTTTC 58.120 37.500 1.45 0.00 34.69 2.29
4469 7958 3.405170 AATCAGCGGCACTTATTTTCG 57.595 42.857 1.45 0.00 0.00 3.46
4470 7959 1.083489 TCAGCGGCACTTATTTTCGG 58.917 50.000 1.45 0.00 0.00 4.30
4471 7960 1.083489 CAGCGGCACTTATTTTCGGA 58.917 50.000 1.45 0.00 0.00 4.55
4472 7961 1.670811 CAGCGGCACTTATTTTCGGAT 59.329 47.619 1.45 0.00 0.00 4.18
4473 7962 1.670811 AGCGGCACTTATTTTCGGATG 59.329 47.619 1.45 0.00 0.00 3.51
4474 7963 1.268539 GCGGCACTTATTTTCGGATGG 60.269 52.381 0.00 0.00 0.00 3.51
4475 7964 2.285083 CGGCACTTATTTTCGGATGGA 58.715 47.619 0.00 0.00 0.00 3.41
4476 7965 2.287915 CGGCACTTATTTTCGGATGGAG 59.712 50.000 0.00 0.00 0.00 3.86
4477 7966 2.618709 GGCACTTATTTTCGGATGGAGG 59.381 50.000 0.00 0.00 0.00 4.30
4478 7967 2.618709 GCACTTATTTTCGGATGGAGGG 59.381 50.000 0.00 0.00 0.00 4.30
4479 7968 3.684413 GCACTTATTTTCGGATGGAGGGA 60.684 47.826 0.00 0.00 0.00 4.20
4480 7969 4.523083 CACTTATTTTCGGATGGAGGGAA 58.477 43.478 0.00 0.00 0.00 3.97
4481 7970 5.133221 CACTTATTTTCGGATGGAGGGAAT 58.867 41.667 0.00 0.00 0.00 3.01
4482 7971 6.296026 CACTTATTTTCGGATGGAGGGAATA 58.704 40.000 0.00 0.00 0.00 1.75
4483 7972 6.204882 CACTTATTTTCGGATGGAGGGAATAC 59.795 42.308 0.00 0.00 0.00 1.89
4484 7973 2.902705 TTTCGGATGGAGGGAATACG 57.097 50.000 0.00 0.00 32.41 3.06
4485 7974 2.076207 TTCGGATGGAGGGAATACGA 57.924 50.000 0.00 0.00 38.59 3.43
4486 7975 2.076207 TCGGATGGAGGGAATACGAA 57.924 50.000 0.00 0.00 37.44 3.85
4487 7976 2.605257 TCGGATGGAGGGAATACGAAT 58.395 47.619 0.00 0.00 37.44 3.34
4488 7977 2.299013 TCGGATGGAGGGAATACGAATG 59.701 50.000 0.00 0.00 37.44 2.67
4489 7978 2.037251 CGGATGGAGGGAATACGAATGT 59.963 50.000 0.00 0.00 32.93 2.71
4490 7979 3.257375 CGGATGGAGGGAATACGAATGTA 59.743 47.826 0.00 0.00 32.93 2.29
4491 7980 4.566987 GGATGGAGGGAATACGAATGTAC 58.433 47.826 0.00 0.00 32.26 2.90
4492 7981 4.283722 GGATGGAGGGAATACGAATGTACT 59.716 45.833 0.00 0.00 32.26 2.73
4493 7982 4.931661 TGGAGGGAATACGAATGTACTC 57.068 45.455 0.00 0.00 32.26 2.59
4507 7996 3.313012 TGTACTCCTGTTTCACATCCG 57.687 47.619 0.00 0.00 0.00 4.18
4530 8019 6.855914 CCGTGCATGGTTAATATGATTGTTAC 59.144 38.462 17.42 0.00 0.00 2.50
4552 8041 3.181514 CGTGAACGTGTTCCTTTTCTTGT 60.182 43.478 10.05 0.00 38.77 3.16
4578 8067 6.976934 TTCTTTTTAGCTTTTCCCATGACT 57.023 33.333 0.00 0.00 0.00 3.41
4579 8068 8.357402 GTTTCTTTTTAGCTTTTCCCATGACTA 58.643 33.333 0.00 0.00 0.00 2.59
4638 8127 4.391523 GCTCTTCTGTGGAGAACATTCTTC 59.608 45.833 0.00 0.00 38.39 2.87
4909 8468 9.691362 GTACTTTTGCCAATTTTTATCTCTCAA 57.309 29.630 0.00 0.00 0.00 3.02
4976 8535 0.179034 GAGGCGCTCCATCCAAGATT 60.179 55.000 7.64 0.00 33.74 2.40
5345 8904 0.662619 CAACATATGGGCGCATCGTT 59.337 50.000 20.75 20.05 0.00 3.85
5378 8937 2.493675 CGGTCCCATGTCTGATATCGAT 59.506 50.000 2.16 2.16 0.00 3.59
5885 9444 3.626028 AGATTTGGTGCGTTTGACTTC 57.374 42.857 0.00 0.00 0.00 3.01
6221 9832 6.480763 TGTTTTGGTGCAGAGATTTCCTATA 58.519 36.000 0.00 0.00 0.00 1.31
6304 9915 2.146342 CCGCAAGTCACATTGAGAAGT 58.854 47.619 0.00 0.00 32.39 3.01
6324 9936 3.947834 AGTAAATCAGCAGGCCATACAAC 59.052 43.478 5.01 0.00 0.00 3.32
6335 9947 3.834231 AGGCCATACAACATTTTCTTGCT 59.166 39.130 5.01 0.00 0.00 3.91
6523 10165 4.201812 TGTTCTCTCTTTTTGCTTCACACG 60.202 41.667 0.00 0.00 0.00 4.49
6663 10307 4.759782 AGTATTCATTCACGACCAAGGAG 58.240 43.478 0.00 0.00 0.00 3.69
6830 10477 4.135153 CCTGACCACCGGAGCTCG 62.135 72.222 9.46 3.03 38.88 5.03
6911 10558 0.890996 GGGGAACAGTGACAGGCAAG 60.891 60.000 0.00 0.00 0.00 4.01
6936 10583 2.812591 CCATGATGCTGCCTCTATTGAC 59.187 50.000 6.49 0.00 0.00 3.18
7133 10792 1.300620 GGGCTTTTGGTCGGTTTGC 60.301 57.895 0.00 0.00 0.00 3.68
7160 10819 1.532437 CGATCTTTGTGTCAGCTGCAA 59.468 47.619 9.47 4.88 0.00 4.08
7161 10820 2.412455 CGATCTTTGTGTCAGCTGCAAG 60.412 50.000 9.47 5.53 0.00 4.01
7162 10821 1.311859 TCTTTGTGTCAGCTGCAAGG 58.688 50.000 9.47 8.51 0.00 3.61
7163 10822 1.134128 TCTTTGTGTCAGCTGCAAGGA 60.134 47.619 9.47 10.79 0.00 3.36
7164 10823 1.884579 CTTTGTGTCAGCTGCAAGGAT 59.115 47.619 9.47 0.00 0.00 3.24
7165 10824 1.527034 TTGTGTCAGCTGCAAGGATC 58.473 50.000 9.47 0.00 0.00 3.36
7166 10825 0.671472 TGTGTCAGCTGCAAGGATCG 60.671 55.000 9.47 0.00 0.00 3.69
7167 10826 0.671781 GTGTCAGCTGCAAGGATCGT 60.672 55.000 9.47 0.00 0.00 3.73
7168 10827 0.035317 TGTCAGCTGCAAGGATCGTT 59.965 50.000 9.47 0.00 0.00 3.85
7169 10828 0.445436 GTCAGCTGCAAGGATCGTTG 59.555 55.000 21.08 21.08 0.00 4.10
7170 10829 0.674581 TCAGCTGCAAGGATCGTTGG 60.675 55.000 25.08 13.31 0.00 3.77
7171 10830 2.042831 AGCTGCAAGGATCGTTGGC 61.043 57.895 25.08 20.64 0.00 4.52
7172 10831 2.042831 GCTGCAAGGATCGTTGGCT 61.043 57.895 25.08 0.00 0.00 4.75
7173 10832 1.798735 CTGCAAGGATCGTTGGCTG 59.201 57.895 25.08 17.52 0.00 4.85
7174 10833 2.262471 CTGCAAGGATCGTTGGCTGC 62.262 60.000 25.08 14.70 0.00 5.25
7175 10834 2.334946 GCAAGGATCGTTGGCTGCA 61.335 57.895 25.08 0.00 0.00 4.41
7195 10854 0.604578 GTGCAGGCCATCATGTTTGT 59.395 50.000 5.01 0.00 0.00 2.83
7243 10909 1.028130 TGCAACGAATGTGCTTTGGA 58.972 45.000 0.00 0.00 0.00 3.53
7248 10914 3.126001 ACGAATGTGCTTTGGAAGAGA 57.874 42.857 0.00 0.00 0.00 3.10
7249 10915 3.070018 ACGAATGTGCTTTGGAAGAGAG 58.930 45.455 0.00 0.00 0.00 3.20
7250 10916 3.244215 ACGAATGTGCTTTGGAAGAGAGA 60.244 43.478 0.00 0.00 0.00 3.10
7258 10924 4.190772 GCTTTGGAAGAGAGATTGAGAGG 58.809 47.826 0.00 0.00 0.00 3.69
7259 10925 4.081198 GCTTTGGAAGAGAGATTGAGAGGA 60.081 45.833 0.00 0.00 0.00 3.71
7282 10948 5.665916 AAAAAGGGAAGCATTCTGGTATG 57.334 39.130 0.00 0.00 46.56 2.39
7283 10949 3.303351 AAGGGAAGCATTCTGGTATGG 57.697 47.619 0.00 0.00 46.56 2.74
7284 10950 1.133668 AGGGAAGCATTCTGGTATGGC 60.134 52.381 0.00 0.00 46.56 4.40
7285 10951 1.410083 GGGAAGCATTCTGGTATGGCA 60.410 52.381 0.00 0.00 46.56 4.92
7286 10952 1.678101 GGAAGCATTCTGGTATGGCAC 59.322 52.381 0.00 0.00 46.56 5.01
7287 10953 1.331756 GAAGCATTCTGGTATGGCACG 59.668 52.381 0.00 0.00 43.23 5.34
7288 10954 0.541392 AGCATTCTGGTATGGCACGA 59.459 50.000 0.00 0.00 0.00 4.35
7289 10955 0.940126 GCATTCTGGTATGGCACGAG 59.060 55.000 0.00 0.00 34.46 4.18
7290 10956 0.940126 CATTCTGGTATGGCACGAGC 59.060 55.000 0.00 0.00 41.10 5.03
7291 10957 0.541392 ATTCTGGTATGGCACGAGCA 59.459 50.000 7.26 0.00 44.61 4.26
7292 10958 0.541392 TTCTGGTATGGCACGAGCAT 59.459 50.000 7.26 1.33 44.61 3.79
7293 10959 0.179076 TCTGGTATGGCACGAGCATG 60.179 55.000 7.26 0.00 44.61 4.06
7294 10960 0.462581 CTGGTATGGCACGAGCATGT 60.463 55.000 7.26 0.00 44.61 3.21
7295 10961 0.827368 TGGTATGGCACGAGCATGTA 59.173 50.000 7.26 0.00 44.61 2.29
7296 10962 1.217882 GGTATGGCACGAGCATGTAC 58.782 55.000 7.26 6.13 44.61 2.90
7297 10963 1.217882 GTATGGCACGAGCATGTACC 58.782 55.000 7.26 0.00 44.61 3.34
7298 10964 1.119684 TATGGCACGAGCATGTACCT 58.880 50.000 7.26 0.00 44.61 3.08
7299 10965 0.253044 ATGGCACGAGCATGTACCTT 59.747 50.000 7.26 0.00 44.61 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 29 0.241749 CTACGTCCCGTGTTAGCACA 59.758 55.000 10.49 0.00 45.50 4.57
153 159 2.885894 CAACCGGAGAGGAGGTATACTC 59.114 54.545 9.46 0.00 45.00 2.59
154 160 2.424523 CCAACCGGAGAGGAGGTATACT 60.425 54.545 9.46 0.00 45.00 2.12
155 161 1.962100 CCAACCGGAGAGGAGGTATAC 59.038 57.143 9.46 0.00 45.00 1.47
157 163 1.049289 GCCAACCGGAGAGGAGGTAT 61.049 60.000 9.46 0.00 45.00 2.73
159 165 3.003763 GCCAACCGGAGAGGAGGT 61.004 66.667 9.46 0.00 45.00 3.85
161 167 1.078848 CAAGCCAACCGGAGAGGAG 60.079 63.158 9.46 0.00 45.00 3.69
162 168 0.909610 ATCAAGCCAACCGGAGAGGA 60.910 55.000 9.46 0.00 45.00 3.71
165 171 1.821216 GAAATCAAGCCAACCGGAGA 58.179 50.000 9.46 0.00 0.00 3.71
166 172 0.447801 CGAAATCAAGCCAACCGGAG 59.552 55.000 9.46 0.00 0.00 4.63
167 173 0.958382 CCGAAATCAAGCCAACCGGA 60.958 55.000 9.46 0.00 37.87 5.14
168 174 1.241315 ACCGAAATCAAGCCAACCGG 61.241 55.000 0.00 0.00 41.04 5.28
169 175 0.596082 AACCGAAATCAAGCCAACCG 59.404 50.000 0.00 0.00 0.00 4.44
170 176 2.403259 CAAACCGAAATCAAGCCAACC 58.597 47.619 0.00 0.00 0.00 3.77
171 177 2.403259 CCAAACCGAAATCAAGCCAAC 58.597 47.619 0.00 0.00 0.00 3.77
172 178 1.270041 GCCAAACCGAAATCAAGCCAA 60.270 47.619 0.00 0.00 0.00 4.52
173 179 0.316841 GCCAAACCGAAATCAAGCCA 59.683 50.000 0.00 0.00 0.00 4.75
174 180 0.732538 CGCCAAACCGAAATCAAGCC 60.733 55.000 0.00 0.00 0.00 4.35
175 181 1.344226 GCGCCAAACCGAAATCAAGC 61.344 55.000 0.00 0.00 0.00 4.01
247 256 1.315981 TGCAGGCGAGAGAGGTACTG 61.316 60.000 0.00 0.00 41.55 2.74
249 258 1.139947 GTGCAGGCGAGAGAGGTAC 59.860 63.158 0.00 0.00 0.00 3.34
250 259 2.052690 GGTGCAGGCGAGAGAGGTA 61.053 63.158 0.00 0.00 0.00 3.08
251 260 3.386237 GGTGCAGGCGAGAGAGGT 61.386 66.667 0.00 0.00 0.00 3.85
327 350 1.375908 GTGAAGCTGACGATGCCCA 60.376 57.895 0.00 0.00 0.00 5.36
355 382 4.516321 GCCAGGTACTAAACGGAAAAGAAA 59.484 41.667 0.00 0.00 36.02 2.52
372 399 2.203907 AGGTGCTCTCTGCCAGGT 60.204 61.111 0.00 0.00 42.00 4.00
615 2354 0.984230 ATGGAGCAGGAAACGGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
671 2410 9.337396 GGTGGGAATTTATTTCTTTTCTTTTGT 57.663 29.630 0.00 0.00 34.56 2.83
725 2466 2.936498 CCACGTGACTTTGACAGAAACT 59.064 45.455 19.30 0.00 0.00 2.66
808 2587 0.901827 TATCAGTGGCGCTTCTTCCA 59.098 50.000 7.64 0.00 0.00 3.53
809 2588 1.291132 GTATCAGTGGCGCTTCTTCC 58.709 55.000 7.64 0.00 0.00 3.46
835 2618 2.917933 CACGGGAGATTAAATCAGGCA 58.082 47.619 0.00 0.00 0.00 4.75
864 2647 7.027161 AGTGAAAGCGCGAAACAATAAATAAT 58.973 30.769 12.10 0.00 0.00 1.28
891 2676 2.671351 CGTGAGCGACAGAAATGGTAGT 60.671 50.000 0.00 0.00 41.33 2.73
944 2729 1.448717 GACGCTTGCCTCCTCTTCC 60.449 63.158 0.00 0.00 0.00 3.46
945 2730 0.739112 CTGACGCTTGCCTCCTCTTC 60.739 60.000 0.00 0.00 0.00 2.87
946 2731 1.294780 CTGACGCTTGCCTCCTCTT 59.705 57.895 0.00 0.00 0.00 2.85
947 2732 2.977178 CTGACGCTTGCCTCCTCT 59.023 61.111 0.00 0.00 0.00 3.69
948 2733 2.817396 GCTGACGCTTGCCTCCTC 60.817 66.667 0.00 0.00 0.00 3.71
1161 2946 4.111016 TCGTCGTACCGCAGCAGG 62.111 66.667 0.00 0.00 37.30 4.85
1215 3003 1.444933 TCTGGGAGGTGGTGTTCATT 58.555 50.000 0.00 0.00 0.00 2.57
1368 3163 0.533951 CCCCTTGGAAATTGAGCAGC 59.466 55.000 0.00 0.00 0.00 5.25
1379 3174 3.660959 AGGATAACGTATTCCCCTTGGA 58.339 45.455 11.92 0.00 39.54 3.53
1630 3432 3.913799 CCATTTTACCCCCTTTTCCCTTT 59.086 43.478 0.00 0.00 0.00 3.11
1631 3433 3.526899 CCATTTTACCCCCTTTTCCCTT 58.473 45.455 0.00 0.00 0.00 3.95
1632 3434 2.225779 CCCATTTTACCCCCTTTTCCCT 60.226 50.000 0.00 0.00 0.00 4.20
1633 3435 2.193127 CCCATTTTACCCCCTTTTCCC 58.807 52.381 0.00 0.00 0.00 3.97
1634 3436 2.193127 CCCCATTTTACCCCCTTTTCC 58.807 52.381 0.00 0.00 0.00 3.13
1635 3437 3.104512 CTCCCCATTTTACCCCCTTTTC 58.895 50.000 0.00 0.00 0.00 2.29
1779 3584 1.812571 CGAACTTATGCAACAGCCCTT 59.187 47.619 0.00 0.00 0.00 3.95
1866 3672 4.201589 CGAGTAATGAAACACGCCAAGTAG 60.202 45.833 0.00 0.00 0.00 2.57
1888 3699 0.162507 CACAGAGTTTTCAGAGCGCG 59.837 55.000 0.00 0.00 0.00 6.86
1909 3720 3.882888 TCTCCACAATTCTGAAACACACC 59.117 43.478 0.00 0.00 0.00 4.16
2008 3819 5.241728 AGTCAACAAGCCAATAAGAAGAACC 59.758 40.000 0.00 0.00 0.00 3.62
2285 4098 0.249657 GGACTAGATTGCAGCCTCCG 60.250 60.000 0.00 0.00 0.00 4.63
2399 4212 4.945246 TGGGAGCTAAAATAGAGTAAGCG 58.055 43.478 0.00 0.00 38.23 4.68
2520 4334 9.066892 GCAATGATCCAAGTAATCTAAATACCA 57.933 33.333 0.00 0.00 0.00 3.25
2521 4335 9.289782 AGCAATGATCCAAGTAATCTAAATACC 57.710 33.333 0.00 0.00 0.00 2.73
2523 4337 9.288576 CCAGCAATGATCCAAGTAATCTAAATA 57.711 33.333 0.00 0.00 0.00 1.40
2524 4338 8.000709 TCCAGCAATGATCCAAGTAATCTAAAT 58.999 33.333 0.00 0.00 0.00 1.40
2525 4339 7.345691 TCCAGCAATGATCCAAGTAATCTAAA 58.654 34.615 0.00 0.00 0.00 1.85
2585 4399 2.350522 GTGCCATAGGTTCTGTGACAG 58.649 52.381 6.18 6.18 0.00 3.51
2602 4416 2.030805 CCTAGCAACACTGAAAAGGTGC 60.031 50.000 0.00 0.00 38.14 5.01
2603 4417 3.214328 ACCTAGCAACACTGAAAAGGTG 58.786 45.455 0.00 0.00 40.19 4.00
2616 4430 7.983166 TTTCCTTTCCTATACTACCTAGCAA 57.017 36.000 0.00 0.00 0.00 3.91
2671 4489 5.082251 ACCTAATACCTCCGAAGACAAAC 57.918 43.478 0.00 0.00 0.00 2.93
2680 4498 7.465513 CGAAAATTCTGAAACCTAATACCTCCG 60.466 40.741 0.00 0.00 0.00 4.63
2705 4523 1.140589 AATCTCTGACTGCTCGCCG 59.859 57.895 0.00 0.00 0.00 6.46
2707 4525 2.568696 TACAATCTCTGACTGCTCGC 57.431 50.000 0.00 0.00 0.00 5.03
2757 4575 2.989166 GCAACAGTTTAGGCAAATCAGC 59.011 45.455 0.00 0.00 0.00 4.26
2758 4576 4.510038 AGCAACAGTTTAGGCAAATCAG 57.490 40.909 0.00 0.00 0.00 2.90
2775 4593 6.055588 GCTCCTTTATATGGACTGTAAGCAA 58.944 40.000 0.00 0.00 37.60 3.91
2785 4603 1.347707 CGGGCTGCTCCTTTATATGGA 59.652 52.381 0.00 0.00 34.39 3.41
2786 4604 1.611673 CCGGGCTGCTCCTTTATATGG 60.612 57.143 0.00 0.00 34.39 2.74
2787 4605 1.072331 ACCGGGCTGCTCCTTTATATG 59.928 52.381 6.32 0.00 34.39 1.78
2788 4606 1.072331 CACCGGGCTGCTCCTTTATAT 59.928 52.381 6.32 0.00 34.39 0.86
2789 4607 0.468226 CACCGGGCTGCTCCTTTATA 59.532 55.000 6.32 0.00 34.39 0.98
2790 4608 1.224592 CACCGGGCTGCTCCTTTAT 59.775 57.895 6.32 0.00 34.39 1.40
2791 4609 2.668632 CACCGGGCTGCTCCTTTA 59.331 61.111 6.32 0.00 34.39 1.85
2797 4615 3.266686 TAACATGCACCGGGCTGCT 62.267 57.895 17.03 0.77 45.15 4.24
2798 4616 2.749839 TAACATGCACCGGGCTGC 60.750 61.111 6.32 8.50 45.15 5.25
2799 4617 2.764314 GCTAACATGCACCGGGCTG 61.764 63.158 6.32 9.21 45.15 4.85
2800 4618 2.438434 GCTAACATGCACCGGGCT 60.438 61.111 6.32 0.00 45.15 5.19
2801 4619 2.438434 AGCTAACATGCACCGGGC 60.438 61.111 6.32 7.25 45.13 6.13
2802 4620 1.819632 GGAGCTAACATGCACCGGG 60.820 63.158 6.32 0.00 34.33 5.73
2803 4621 1.819632 GGGAGCTAACATGCACCGG 60.820 63.158 0.00 0.00 43.16 5.28
2804 4622 2.173669 CGGGAGCTAACATGCACCG 61.174 63.158 0.00 7.87 43.16 4.94
2805 4623 3.813596 CGGGAGCTAACATGCACC 58.186 61.111 0.00 0.00 41.84 5.01
2830 4648 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2833 4651 3.400054 CTGGACCCTTCCCCGGAC 61.400 72.222 0.73 0.00 42.01 4.79
2837 4655 4.048470 GTGGCTGGACCCTTCCCC 62.048 72.222 0.00 0.00 42.01 4.81
2838 4656 2.485780 GAAGTGGCTGGACCCTTCCC 62.486 65.000 0.00 0.00 42.01 3.97
2839 4657 1.002011 GAAGTGGCTGGACCCTTCC 60.002 63.158 0.00 0.00 43.19 3.46
2840 4658 1.376037 CGAAGTGGCTGGACCCTTC 60.376 63.158 0.00 0.00 40.03 3.46
2841 4659 2.750350 CGAAGTGGCTGGACCCTT 59.250 61.111 0.00 0.00 37.83 3.95
2842 4660 3.322466 CCGAAGTGGCTGGACCCT 61.322 66.667 0.00 0.00 37.83 4.34
2843 4661 4.410400 CCCGAAGTGGCTGGACCC 62.410 72.222 0.00 0.00 37.83 4.46
2844 4662 3.607370 GACCCGAAGTGGCTGGACC 62.607 68.421 0.00 0.00 35.87 4.46
2845 4663 2.047179 GACCCGAAGTGGCTGGAC 60.047 66.667 0.00 0.00 35.87 4.02
2846 4664 1.415672 AAAGACCCGAAGTGGCTGGA 61.416 55.000 0.00 0.00 35.87 3.86
2847 4665 0.323629 TAAAGACCCGAAGTGGCTGG 59.676 55.000 0.00 0.00 35.87 4.85
2848 4666 1.002087 ACTAAAGACCCGAAGTGGCTG 59.998 52.381 0.00 0.00 35.87 4.85
2849 4667 1.349067 ACTAAAGACCCGAAGTGGCT 58.651 50.000 0.00 0.00 35.87 4.75
2850 4668 2.614779 GTACTAAAGACCCGAAGTGGC 58.385 52.381 0.00 0.00 35.87 5.01
2851 4669 2.872370 CGTACTAAAGACCCGAAGTGG 58.128 52.381 0.00 0.00 37.55 4.00
2852 4670 2.257034 GCGTACTAAAGACCCGAAGTG 58.743 52.381 0.00 0.00 0.00 3.16
2853 4671 1.888512 TGCGTACTAAAGACCCGAAGT 59.111 47.619 0.00 0.00 0.00 3.01
2854 4672 2.527100 CTGCGTACTAAAGACCCGAAG 58.473 52.381 0.00 0.00 0.00 3.79
2855 4673 1.403249 GCTGCGTACTAAAGACCCGAA 60.403 52.381 0.00 0.00 0.00 4.30
2856 4674 0.171903 GCTGCGTACTAAAGACCCGA 59.828 55.000 0.00 0.00 0.00 5.14
2857 4675 0.804933 GGCTGCGTACTAAAGACCCG 60.805 60.000 0.00 0.00 0.00 5.28
2858 4676 0.535797 AGGCTGCGTACTAAAGACCC 59.464 55.000 0.00 0.00 0.00 4.46
2859 4677 2.381725 AAGGCTGCGTACTAAAGACC 57.618 50.000 0.00 0.00 0.00 3.85
2860 4678 2.671888 GGAAAGGCTGCGTACTAAAGAC 59.328 50.000 0.00 0.00 0.00 3.01
2861 4679 2.354403 GGGAAAGGCTGCGTACTAAAGA 60.354 50.000 0.00 0.00 0.00 2.52
2862 4680 2.007608 GGGAAAGGCTGCGTACTAAAG 58.992 52.381 0.00 0.00 0.00 1.85
2863 4681 1.626825 AGGGAAAGGCTGCGTACTAAA 59.373 47.619 0.00 0.00 0.00 1.85
2864 4682 1.272807 AGGGAAAGGCTGCGTACTAA 58.727 50.000 0.00 0.00 0.00 2.24
2865 4683 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2866 4684 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2867 4685 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2868 4686 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2869 4687 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2870 4688 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2871 4689 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2872 4690 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
2873 4691 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
2875 4693 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2881 4699 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2882 4700 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
2883 4701 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
2885 4703 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
2908 4726 2.214920 GGTCACGGGTCCAAGTCCT 61.215 63.158 0.00 0.00 0.00 3.85
2910 4728 1.292541 GAGGTCACGGGTCCAAGTC 59.707 63.158 3.17 0.00 0.00 3.01
2911 4729 0.836400 ATGAGGTCACGGGTCCAAGT 60.836 55.000 3.17 0.00 0.00 3.16
2913 4731 1.676968 CATGAGGTCACGGGTCCAA 59.323 57.895 3.17 0.00 0.00 3.53
2914 4732 2.290287 CCATGAGGTCACGGGTCCA 61.290 63.158 3.17 0.00 0.00 4.02
2915 4733 2.584608 CCATGAGGTCACGGGTCC 59.415 66.667 0.00 0.00 0.00 4.46
2925 4743 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2928 4746 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2929 4747 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2930 4748 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2931 4749 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2932 4750 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2933 4751 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2934 4752 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2936 4754 0.961019 TTGGTAAAGCTGCTGCCTTG 59.039 50.000 12.44 0.00 40.80 3.61
2939 4757 0.459063 GCATTGGTAAAGCTGCTGCC 60.459 55.000 12.44 7.07 40.80 4.85
2940 4758 0.799534 CGCATTGGTAAAGCTGCTGC 60.800 55.000 1.35 7.62 40.05 5.25
2941 4759 0.799534 GCGCATTGGTAAAGCTGCTG 60.800 55.000 1.35 0.00 32.48 4.41
2942 4760 1.508088 GCGCATTGGTAAAGCTGCT 59.492 52.632 0.30 0.00 32.48 4.24
2943 4761 1.517039 GGCGCATTGGTAAAGCTGC 60.517 57.895 10.83 0.00 0.00 5.25
2945 4763 0.527565 CTTGGCGCATTGGTAAAGCT 59.472 50.000 10.83 0.00 0.00 3.74
2946 4764 0.458370 CCTTGGCGCATTGGTAAAGC 60.458 55.000 10.83 0.00 0.00 3.51
2948 4766 0.897863 AGCCTTGGCGCATTGGTAAA 60.898 50.000 10.83 0.00 0.00 2.01
2950 4768 1.748879 GAGCCTTGGCGCATTGGTA 60.749 57.895 10.83 0.00 0.00 3.25
2951 4769 3.064324 GAGCCTTGGCGCATTGGT 61.064 61.111 10.83 0.00 0.00 3.67
2952 4770 3.830192 GGAGCCTTGGCGCATTGG 61.830 66.667 16.55 8.70 0.00 3.16
2953 4771 3.830192 GGGAGCCTTGGCGCATTG 61.830 66.667 16.55 0.00 0.00 2.82
2960 4778 1.910580 TAAGCGAAGGGGAGCCTTGG 61.911 60.000 0.00 0.00 0.00 3.61
2961 4779 0.744771 GTAAGCGAAGGGGAGCCTTG 60.745 60.000 0.00 0.00 0.00 3.61
2962 4780 1.198759 TGTAAGCGAAGGGGAGCCTT 61.199 55.000 0.00 0.00 0.00 4.35
2963 4781 1.612442 TGTAAGCGAAGGGGAGCCT 60.612 57.895 0.00 0.00 0.00 4.58
2964 4782 1.153349 CTGTAAGCGAAGGGGAGCC 60.153 63.158 0.00 0.00 0.00 4.70
2965 4783 0.460459 GACTGTAAGCGAAGGGGAGC 60.460 60.000 0.00 0.00 37.60 4.70
2966 4784 0.175989 GGACTGTAAGCGAAGGGGAG 59.824 60.000 0.00 0.00 37.60 4.30
2970 4788 2.743636 TGAAGGACTGTAAGCGAAGG 57.256 50.000 0.00 0.00 37.60 3.46
2971 4789 9.692749 TTATTATATGAAGGACTGTAAGCGAAG 57.307 33.333 0.00 0.00 37.60 3.79
2974 4792 7.598869 TGCTTATTATATGAAGGACTGTAAGCG 59.401 37.037 0.00 0.00 42.48 4.68
2975 4793 8.833231 TGCTTATTATATGAAGGACTGTAAGC 57.167 34.615 0.00 0.00 40.91 3.09
2993 4873 8.213679 TCTGTAGCAGATAGGATTTTGCTTATT 58.786 33.333 2.97 0.00 43.91 1.40
3291 6643 5.670485 TCTGAAGTTATCAACCATATGCGT 58.330 37.500 0.00 0.00 37.67 5.24
3347 6699 8.800370 AAACAACTGTTTTTATTGGTCCAATT 57.200 26.923 22.13 7.05 45.07 2.32
3394 6746 8.315391 TGAAGAAAGTCATGAGAACAACATAG 57.685 34.615 0.00 0.00 0.00 2.23
3424 6850 5.887598 AGTATTGAACCAAATATCTGCAGCA 59.112 36.000 9.47 0.00 0.00 4.41
3590 7016 7.869937 CCACATGTAATCAAATCTCGTCTATCT 59.130 37.037 0.00 0.00 0.00 1.98
3727 7153 4.649088 TGTCATCTACATGAAGGTACGG 57.351 45.455 0.00 0.00 40.90 4.02
3729 7155 7.766278 ACAAGATTGTCATCTACATGAAGGTAC 59.234 37.037 0.00 0.00 40.90 3.34
3747 7173 5.873712 AGTTAGAGCACATCTGACAAGATTG 59.126 40.000 3.12 0.00 44.89 2.67
3791 7217 8.962679 TCAATTTGTAGTTTCAAAGTGGTAACT 58.037 29.630 15.71 0.00 46.38 2.24
3942 7369 8.592809 AGGTTTATCCATTTTCAACTAATTGCA 58.407 29.630 0.00 0.00 39.02 4.08
3971 7398 1.975680 ACCCATGTACTTCTTCCACGT 59.024 47.619 0.00 0.00 0.00 4.49
3972 7399 2.233922 AGACCCATGTACTTCTTCCACG 59.766 50.000 0.00 0.00 0.00 4.94
4009 7436 8.681486 TCAAATATCATTTGACCACTATCCAG 57.319 34.615 9.65 0.00 33.90 3.86
4054 7481 7.170998 TCGAGTAGAAGTTCAAATCAAGTTTCC 59.829 37.037 5.50 0.00 0.00 3.13
4055 7482 8.073355 TCGAGTAGAAGTTCAAATCAAGTTTC 57.927 34.615 5.50 0.00 0.00 2.78
4061 7488 6.934645 ACCAAATCGAGTAGAAGTTCAAATCA 59.065 34.615 5.50 0.00 0.00 2.57
4114 7541 9.926158 TTTCATTAGATAAGCTCAAATTGCAAA 57.074 25.926 1.71 0.00 0.00 3.68
4220 7647 3.071023 ACCTGAAGACCAACTCGAATTCA 59.929 43.478 6.22 0.00 0.00 2.57
4321 7799 6.492254 GTTTACAAACCCATCCGATCAATAC 58.508 40.000 0.00 0.00 32.82 1.89
4387 7876 0.544697 TATTTTGGGACGGAGGGAGC 59.455 55.000 0.00 0.00 0.00 4.70
4389 7878 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4390 7879 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4391 7880 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4392 7881 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4393 7882 3.581332 AGAGACACTTATTTTGGGACGGA 59.419 43.478 0.00 0.00 0.00 4.69
4395 7884 4.566004 TCAGAGACACTTATTTTGGGACG 58.434 43.478 0.00 0.00 0.00 4.79
4396 7885 7.308435 CAAATCAGAGACACTTATTTTGGGAC 58.692 38.462 0.00 0.00 32.27 4.46
4398 7887 6.209391 ACCAAATCAGAGACACTTATTTTGGG 59.791 38.462 13.74 7.87 40.17 4.12
4400 7889 8.783093 TGTACCAAATCAGAGACACTTATTTTG 58.217 33.333 0.00 0.00 32.27 2.44
4401 7890 8.918202 TGTACCAAATCAGAGACACTTATTTT 57.082 30.769 0.00 0.00 32.27 1.82
4402 7891 8.918202 TTGTACCAAATCAGAGACACTTATTT 57.082 30.769 0.00 0.00 34.12 1.40
4403 7892 8.918202 TTTGTACCAAATCAGAGACACTTATT 57.082 30.769 0.00 0.00 0.00 1.40
4404 7893 8.157476 ACTTTGTACCAAATCAGAGACACTTAT 58.843 33.333 0.00 0.00 0.00 1.73
4405 7894 7.506114 ACTTTGTACCAAATCAGAGACACTTA 58.494 34.615 0.00 0.00 0.00 2.24
4406 7895 6.357367 ACTTTGTACCAAATCAGAGACACTT 58.643 36.000 0.00 0.00 0.00 3.16
4407 7896 5.930135 ACTTTGTACCAAATCAGAGACACT 58.070 37.500 0.00 0.00 0.00 3.55
4408 7897 6.619801 AACTTTGTACCAAATCAGAGACAC 57.380 37.500 0.00 0.00 0.00 3.67
4409 7898 7.506114 ACTAACTTTGTACCAAATCAGAGACA 58.494 34.615 0.00 0.00 0.00 3.41
4410 7899 7.964604 ACTAACTTTGTACCAAATCAGAGAC 57.035 36.000 0.00 0.00 0.00 3.36
4411 7900 8.644216 TGTACTAACTTTGTACCAAATCAGAGA 58.356 33.333 9.98 0.00 39.42 3.10
4412 7901 8.827177 TGTACTAACTTTGTACCAAATCAGAG 57.173 34.615 9.98 0.00 39.42 3.35
4413 7902 9.048446 GTTGTACTAACTTTGTACCAAATCAGA 57.952 33.333 9.98 0.00 39.42 3.27
4414 7903 9.052759 AGTTGTACTAACTTTGTACCAAATCAG 57.947 33.333 9.98 0.00 39.42 2.90
4415 7904 8.967664 AGTTGTACTAACTTTGTACCAAATCA 57.032 30.769 9.98 0.00 39.42 2.57
4434 7923 5.121142 GCCGCTGATTTAGTACAAAGTTGTA 59.879 40.000 0.00 0.00 42.35 2.41
4435 7924 4.083484 GCCGCTGATTTAGTACAAAGTTGT 60.083 41.667 1.75 1.75 44.86 3.32
4436 7925 4.083537 TGCCGCTGATTTAGTACAAAGTTG 60.084 41.667 0.00 0.00 0.00 3.16
4437 7926 4.069304 TGCCGCTGATTTAGTACAAAGTT 58.931 39.130 0.00 0.00 0.00 2.66
4438 7927 3.435671 GTGCCGCTGATTTAGTACAAAGT 59.564 43.478 0.00 0.00 0.00 2.66
4439 7928 3.684788 AGTGCCGCTGATTTAGTACAAAG 59.315 43.478 0.00 0.00 0.00 2.77
4440 7929 3.670625 AGTGCCGCTGATTTAGTACAAA 58.329 40.909 0.00 0.00 0.00 2.83
4441 7930 3.328382 AGTGCCGCTGATTTAGTACAA 57.672 42.857 0.00 0.00 0.00 2.41
4442 7931 3.328382 AAGTGCCGCTGATTTAGTACA 57.672 42.857 0.00 0.00 0.00 2.90
4443 7932 5.986004 AATAAGTGCCGCTGATTTAGTAC 57.014 39.130 0.00 0.00 0.00 2.73
4444 7933 6.237996 CGAAAATAAGTGCCGCTGATTTAGTA 60.238 38.462 0.99 0.00 37.29 1.82
4445 7934 5.447279 CGAAAATAAGTGCCGCTGATTTAGT 60.447 40.000 0.99 0.00 37.29 2.24
4446 7935 4.963953 CGAAAATAAGTGCCGCTGATTTAG 59.036 41.667 0.99 0.00 37.29 1.85
4447 7936 4.201871 CCGAAAATAAGTGCCGCTGATTTA 60.202 41.667 0.99 0.00 37.29 1.40
4448 7937 3.427503 CCGAAAATAAGTGCCGCTGATTT 60.428 43.478 0.00 0.00 39.41 2.17
4449 7938 2.097466 CCGAAAATAAGTGCCGCTGATT 59.903 45.455 0.00 0.00 29.37 2.57
4450 7939 1.670811 CCGAAAATAAGTGCCGCTGAT 59.329 47.619 0.00 0.00 0.00 2.90
4451 7940 1.083489 CCGAAAATAAGTGCCGCTGA 58.917 50.000 0.00 0.00 0.00 4.26
4452 7941 1.083489 TCCGAAAATAAGTGCCGCTG 58.917 50.000 0.00 0.00 0.00 5.18
4453 7942 1.670811 CATCCGAAAATAAGTGCCGCT 59.329 47.619 0.00 0.00 0.00 5.52
4454 7943 1.268539 CCATCCGAAAATAAGTGCCGC 60.269 52.381 0.00 0.00 0.00 6.53
4455 7944 2.285083 TCCATCCGAAAATAAGTGCCG 58.715 47.619 0.00 0.00 0.00 5.69
4456 7945 2.618709 CCTCCATCCGAAAATAAGTGCC 59.381 50.000 0.00 0.00 0.00 5.01
4457 7946 2.618709 CCCTCCATCCGAAAATAAGTGC 59.381 50.000 0.00 0.00 0.00 4.40
4458 7947 4.150897 TCCCTCCATCCGAAAATAAGTG 57.849 45.455 0.00 0.00 0.00 3.16
4459 7948 4.855298 TTCCCTCCATCCGAAAATAAGT 57.145 40.909 0.00 0.00 0.00 2.24
4460 7949 5.408604 CGTATTCCCTCCATCCGAAAATAAG 59.591 44.000 0.00 0.00 0.00 1.73
4461 7950 5.070714 TCGTATTCCCTCCATCCGAAAATAA 59.929 40.000 0.00 0.00 0.00 1.40
4462 7951 4.589798 TCGTATTCCCTCCATCCGAAAATA 59.410 41.667 0.00 0.00 0.00 1.40
4463 7952 3.389983 TCGTATTCCCTCCATCCGAAAAT 59.610 43.478 0.00 0.00 0.00 1.82
4464 7953 2.767394 TCGTATTCCCTCCATCCGAAAA 59.233 45.455 0.00 0.00 0.00 2.29
4465 7954 2.390696 TCGTATTCCCTCCATCCGAAA 58.609 47.619 0.00 0.00 0.00 3.46
4466 7955 2.076207 TCGTATTCCCTCCATCCGAA 57.924 50.000 0.00 0.00 0.00 4.30
4467 7956 2.076207 TTCGTATTCCCTCCATCCGA 57.924 50.000 0.00 0.00 0.00 4.55
4468 7957 2.037251 ACATTCGTATTCCCTCCATCCG 59.963 50.000 0.00 0.00 0.00 4.18
4469 7958 3.771577 ACATTCGTATTCCCTCCATCC 57.228 47.619 0.00 0.00 0.00 3.51
4470 7959 5.470047 AGTACATTCGTATTCCCTCCATC 57.530 43.478 0.00 0.00 0.00 3.51
4471 7960 4.283722 GGAGTACATTCGTATTCCCTCCAT 59.716 45.833 0.00 0.00 44.75 3.41
4472 7961 3.640029 GGAGTACATTCGTATTCCCTCCA 59.360 47.826 0.00 0.00 44.75 3.86
4473 7962 4.254402 GGAGTACATTCGTATTCCCTCC 57.746 50.000 0.00 0.00 44.75 4.30
4477 7966 8.268401 TGTGAAACAGGAGTACATTCGTATTCC 61.268 40.741 6.15 6.15 45.67 3.01
4478 7967 6.588756 TGTGAAACAGGAGTACATTCGTATTC 59.411 38.462 0.00 0.00 45.67 1.75
4479 7968 6.460781 TGTGAAACAGGAGTACATTCGTATT 58.539 36.000 0.00 0.00 45.67 1.89
4480 7969 6.032956 TGTGAAACAGGAGTACATTCGTAT 57.967 37.500 0.00 0.00 45.67 3.06
4481 7970 5.456548 TGTGAAACAGGAGTACATTCGTA 57.543 39.130 0.00 0.00 45.67 3.43
4482 7971 4.330944 TGTGAAACAGGAGTACATTCGT 57.669 40.909 0.00 0.00 45.67 3.85
4507 7996 7.375808 CACGTAACAATCATATTAACCATGCAC 59.624 37.037 0.00 0.00 0.00 4.57
4530 8019 3.181514 ACAAGAAAAGGAACACGTTCACG 60.182 43.478 11.77 0.00 41.20 4.35
4548 8037 6.816140 TGGGAAAAGCTAAAAAGAAACACAAG 59.184 34.615 0.00 0.00 0.00 3.16
4552 8041 6.983890 GTCATGGGAAAAGCTAAAAAGAAACA 59.016 34.615 0.00 0.00 0.00 2.83
4579 8068 8.306761 CCTGAATAAACAAAAGCAGAACCTTAT 58.693 33.333 0.00 0.00 0.00 1.73
4945 8504 2.827423 CGCCTCTCCTGCATGGAT 59.173 61.111 5.50 0.00 45.16 3.41
4976 8535 5.852282 TCGATATTGTGATGGTGAGAAGA 57.148 39.130 0.00 0.00 0.00 2.87
5132 8691 4.511527 AGAGTGATGCAAGACCATTGTAG 58.488 43.478 0.00 0.00 0.00 2.74
5345 8904 3.787394 GGACCGAGAAGTGTCCCA 58.213 61.111 0.00 0.00 44.32 4.37
5378 8937 1.073722 CAGTGCAAAGAGGCCAGGA 59.926 57.895 5.01 0.00 0.00 3.86
5483 9042 1.389609 GCATGACCAAGGGGAGCATG 61.390 60.000 0.00 13.17 45.08 4.06
5861 9420 4.385825 AGTCAAACGCACCAAATCTTCTA 58.614 39.130 0.00 0.00 0.00 2.10
5888 9447 1.228429 TTTCCCGGAACCAGGCTTG 60.228 57.895 0.73 0.00 0.00 4.01
6194 9805 4.037923 GGAAATCTCTGCACCAAAACAAGA 59.962 41.667 0.00 0.00 0.00 3.02
6202 9813 5.396772 CCAACTATAGGAAATCTCTGCACCA 60.397 44.000 4.43 0.00 0.00 4.17
6221 9832 0.329596 GCCTGGTGAGAATCCCAACT 59.670 55.000 0.00 0.00 35.50 3.16
6304 9915 3.961849 TGTTGTATGGCCTGCTGATTTA 58.038 40.909 3.32 0.00 0.00 1.40
6335 9947 7.611467 AGCACCTTCATGAGAAATAACAATACA 59.389 33.333 0.00 0.00 32.35 2.29
6422 10034 1.478631 ATCCACTCGACTGCTGATCA 58.521 50.000 0.00 0.00 0.00 2.92
6423 10035 2.593346 AATCCACTCGACTGCTGATC 57.407 50.000 0.00 0.00 0.00 2.92
6523 10165 2.871022 CAGCAGGTGCATATGAGAAGAC 59.129 50.000 6.97 0.00 45.16 3.01
6592 10234 3.547613 GCATCATTTGTTCAGAGATCGCC 60.548 47.826 0.00 0.00 0.00 5.54
6653 10297 1.088340 CAGCTGCATCTCCTTGGTCG 61.088 60.000 0.00 0.00 0.00 4.79
6663 10307 0.455633 CGTTTGGAAGCAGCTGCATC 60.456 55.000 38.24 34.37 45.16 3.91
6891 10538 1.352622 TTGCCTGTCACTGTTCCCCT 61.353 55.000 0.00 0.00 0.00 4.79
7133 10792 3.768406 CTGACACAAAGATCGGAGAGAG 58.232 50.000 0.00 0.00 43.63 3.20
7160 10819 1.376424 CACTGCAGCCAACGATCCT 60.376 57.895 15.27 0.00 0.00 3.24
7161 10820 3.044059 GCACTGCAGCCAACGATCC 62.044 63.158 15.27 0.00 0.00 3.36
7162 10821 2.327343 TGCACTGCAGCCAACGATC 61.327 57.895 15.27 0.00 33.32 3.69
7163 10822 2.281692 TGCACTGCAGCCAACGAT 60.282 55.556 15.27 0.00 33.32 3.73
7172 10831 2.049767 CATGATGGCCTGCACTGCA 61.050 57.895 3.32 3.11 36.92 4.41
7173 10832 1.601419 AACATGATGGCCTGCACTGC 61.601 55.000 3.32 0.00 0.00 4.40
7174 10833 0.892755 AAACATGATGGCCTGCACTG 59.107 50.000 3.32 5.48 0.00 3.66
7175 10834 0.892755 CAAACATGATGGCCTGCACT 59.107 50.000 3.32 0.00 0.00 4.40
7195 10854 5.961272 ACACGTGTATGTACAATCTCATGA 58.039 37.500 21.98 0.00 38.04 3.07
7225 10891 2.053627 CTTCCAAAGCACATTCGTTGC 58.946 47.619 0.00 0.00 0.00 4.17
7264 10930 1.133668 GCCATACCAGAATGCTTCCCT 60.134 52.381 0.00 0.00 31.97 4.20
7271 10937 0.940126 GCTCGTGCCATACCAGAATG 59.060 55.000 0.00 0.00 0.00 2.67
7275 10941 0.462581 ACATGCTCGTGCCATACCAG 60.463 55.000 7.05 0.00 38.71 4.00
7280 10946 0.253044 AAGGTACATGCTCGTGCCAT 59.747 50.000 13.82 1.43 43.53 4.40
7281 10947 1.676968 AAGGTACATGCTCGTGCCA 59.323 52.632 13.82 0.00 43.53 4.92
7282 10948 4.617875 AAGGTACATGCTCGTGCC 57.382 55.556 7.05 5.30 41.59 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.