Multiple sequence alignment - TraesCS2D01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G307900 chr2D 100.000 4684 0 0 1 4684 394790656 394795339 0.000000e+00 8650.0
1 TraesCS2D01G307900 chr2D 100.000 3059 0 0 5086 8144 394795741 394798799 0.000000e+00 5650.0
2 TraesCS2D01G307900 chr2D 98.039 102 2 0 6440 6541 394796997 394797098 2.340000e-40 178.0
3 TraesCS2D01G307900 chr2D 98.039 102 2 0 6342 6443 394797095 394797196 2.340000e-40 178.0
4 TraesCS2D01G307900 chr2A 94.598 4535 163 37 1 4520 532858179 532862646 0.000000e+00 6942.0
5 TraesCS2D01G307900 chr2A 96.145 1712 50 11 6440 8144 532864328 532866030 0.000000e+00 2782.0
6 TraesCS2D01G307900 chr2A 97.558 860 17 2 5584 6443 532863574 532864429 0.000000e+00 1469.0
7 TraesCS2D01G307900 chr2A 98.504 468 7 0 5086 5553 532863109 532863576 0.000000e+00 826.0
8 TraesCS2D01G307900 chr2A 95.161 124 6 0 4559 4682 532862647 532862770 6.450000e-46 196.0
9 TraesCS2D01G307900 chr2B 96.207 2162 39 8 2276 4435 467863228 467865348 0.000000e+00 3498.0
10 TraesCS2D01G307900 chr2B 96.471 1672 47 7 6440 8108 467869526 467871188 0.000000e+00 2750.0
11 TraesCS2D01G307900 chr2B 93.507 1648 68 14 639 2277 467861450 467863067 0.000000e+00 2414.0
12 TraesCS2D01G307900 chr2B 96.045 986 24 6 5144 6129 467866062 467867032 0.000000e+00 1591.0
13 TraesCS2D01G307900 chr2B 89.486 837 57 10 1 829 467860310 467861123 0.000000e+00 1029.0
14 TraesCS2D01G307900 chr2B 97.179 319 9 0 6125 6443 467869309 467869627 2.590000e-149 540.0
15 TraesCS2D01G307900 chr2B 97.000 300 9 0 4385 4684 467865347 467865646 9.430000e-139 505.0
16 TraesCS2D01G307900 chr2B 78.509 228 30 12 256 475 467861130 467861346 1.840000e-26 132.0
17 TraesCS2D01G307900 chr2B 94.203 69 4 0 5981 6049 402372845 402372913 1.120000e-18 106.0
18 TraesCS2D01G307900 chr2B 97.872 47 1 0 5086 5132 467866024 467866070 1.880000e-11 82.4
19 TraesCS2D01G307900 chr1D 85.047 107 16 0 5 111 8100097 8099991 8.640000e-20 110.0
20 TraesCS2D01G307900 chr1D 92.754 69 5 0 5981 6049 438328505 438328437 5.200000e-17 100.0
21 TraesCS2D01G307900 chr7D 93.056 72 5 0 5978 6049 175941737 175941808 1.120000e-18 106.0
22 TraesCS2D01G307900 chr3B 94.203 69 4 0 5981 6049 614918929 614918997 1.120000e-18 106.0
23 TraesCS2D01G307900 chr7B 87.097 93 10 2 7 98 243913053 243913144 4.020000e-18 104.0
24 TraesCS2D01G307900 chr6D 91.667 72 6 0 5978 6049 249987138 249987209 5.200000e-17 100.0
25 TraesCS2D01G307900 chr6D 81.553 103 17 2 12 113 341997618 341997517 5.240000e-12 84.2
26 TraesCS2D01G307900 chr6A 92.754 69 5 0 5981 6049 346585508 346585440 5.200000e-17 100.0
27 TraesCS2D01G307900 chr5A 92.754 69 5 0 5981 6049 96428493 96428425 5.200000e-17 100.0
28 TraesCS2D01G307900 chr5A 84.694 98 14 1 4 100 489685772 489685869 6.730000e-16 97.1
29 TraesCS2D01G307900 chr5A 84.694 98 14 1 4 100 489685924 489686021 6.730000e-16 97.1
30 TraesCS2D01G307900 chr3D 82.292 96 17 0 5 100 591097659 591097564 5.240000e-12 84.2
31 TraesCS2D01G307900 chr1A 81.553 103 13 6 2 104 579565096 579565000 6.780000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G307900 chr2D 394790656 394798799 8143 False 3664.000000 8650 99.019500 1 8144 4 chr2D.!!$F1 8143
1 TraesCS2D01G307900 chr2A 532858179 532866030 7851 False 2443.000000 6942 96.393200 1 8144 5 chr2A.!!$F1 8143
2 TraesCS2D01G307900 chr2B 467860310 467871188 10878 False 1393.488889 3498 93.586222 1 8108 9 chr2B.!!$F2 8107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 143 0.800683 TGCGCCGTTCACGAATCTAG 60.801 55.000 4.18 0.0 43.02 2.43 F
1144 1666 0.614812 ATTGTTTAGGCCCGTACCGT 59.385 50.000 0.00 0.0 33.69 4.83 F
1358 1888 0.390735 GCGGACAGGACCATTACGTT 60.391 55.000 0.00 0.0 0.00 3.99 F
2012 2557 0.616395 TGGACATACCTCCGGCAGAA 60.616 55.000 0.00 0.0 39.86 3.02 F
3366 4084 1.324383 ACCATTGGACAAACCGGAAC 58.676 50.000 9.46 0.0 42.61 3.62 F
4143 4864 3.198635 TCAGATTCCTGCCCAGAACTTAG 59.801 47.826 0.00 0.0 40.20 2.18 F
5249 6019 2.833943 CCTTTTGGGAGAAAAGATGGGG 59.166 50.000 8.19 0.0 39.04 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1797 0.319211 TTACTGACTCGCCAACGGTG 60.319 55.000 0.00 0.00 40.63 4.94 R
2251 2796 2.656947 TTGTAGGGCCCATGCTTATC 57.343 50.000 27.56 5.12 37.74 1.75 R
2308 3016 5.070001 CCCTGTTTCCTGAAATCAGTACAA 58.930 41.667 9.43 0.00 42.27 2.41 R
3651 4370 2.890311 TCACCACACTGCCCAAATAAAG 59.110 45.455 0.00 0.00 0.00 1.85 R
4244 4965 0.601311 GGCGGCTGAGCAGGTATTAG 60.601 60.000 6.82 0.00 39.27 1.73 R
5474 6244 0.037590 TGTCCCGATGAAAGTTGGGG 59.962 55.000 0.00 0.00 42.36 4.96 R
7218 10273 0.179048 TATTGCCTCCTGTCGCATGG 60.179 55.000 0.00 0.00 34.35 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.612442 AAGTCCCCCTAGCTCGCAA 60.612 57.895 0.00 0.00 0.00 4.85
139 141 2.048597 TGCGCCGTTCACGAATCT 60.049 55.556 4.18 0.00 43.02 2.40
141 143 0.800683 TGCGCCGTTCACGAATCTAG 60.801 55.000 4.18 0.00 43.02 2.43
189 191 5.433712 AGGGAGTCTCCTCTCACTTCTATTA 59.566 44.000 18.58 0.00 44.66 0.98
196 198 8.700973 GTCTCCTCTCACTTCTATTATTTCCTT 58.299 37.037 0.00 0.00 0.00 3.36
214 216 3.454812 TCCTTTATCCCACCTTCTAGTGC 59.545 47.826 0.00 0.00 36.38 4.40
301 304 4.464069 GAGGGGATCGAAGGATATTCTG 57.536 50.000 0.00 0.00 31.51 3.02
405 408 7.484035 TGTTGTGCCAAACATAAAATAAACC 57.516 32.000 0.00 0.00 38.99 3.27
461 464 7.453752 TCTGGAAATATATAGGGCGTAGAACTT 59.546 37.037 0.00 0.00 0.00 2.66
494 497 9.092876 ACAAAAATGAGTTATTTCTTTTTGCGA 57.907 25.926 15.04 0.00 44.58 5.10
495 498 9.356929 CAAAAATGAGTTATTTCTTTTTGCGAC 57.643 29.630 6.03 0.00 38.90 5.19
587 600 5.607119 TCTCAAAACCGCATAACTCTTTC 57.393 39.130 0.00 0.00 0.00 2.62
595 608 3.877508 CCGCATAACTCTTTCCTTTAGGG 59.122 47.826 0.00 0.00 35.41 3.53
631 644 5.188948 TCACTAGGCAAACCAGTGTATATGT 59.811 40.000 11.69 0.00 41.75 2.29
677 690 2.272447 TGTCGTGACATCGCCTCCA 61.272 57.895 0.00 0.00 36.21 3.86
713 1231 7.084486 GCAAAAAGAAATCCTAGATTGACGTT 58.916 34.615 0.00 0.00 0.00 3.99
714 1232 7.595130 GCAAAAAGAAATCCTAGATTGACGTTT 59.405 33.333 0.00 0.00 0.00 3.60
762 1280 6.765403 TCTTTACGAAAGGAATTGAGAGGAA 58.235 36.000 0.00 0.00 39.01 3.36
898 1420 3.136443 CCATAGCCATACAGAAACCCTGA 59.864 47.826 0.00 0.00 45.78 3.86
940 1462 4.626081 ACACACCCACTGCTCGCC 62.626 66.667 0.00 0.00 0.00 5.54
965 1487 3.047877 CCGAAACTGTCCACGCCC 61.048 66.667 0.00 0.00 0.00 6.13
968 1490 3.485346 GAAACTGTCCACGCCCCCA 62.485 63.158 0.00 0.00 0.00 4.96
1141 1663 2.096335 CCGAAATTGTTTAGGCCCGTAC 59.904 50.000 0.00 0.00 0.00 3.67
1142 1664 2.096335 CGAAATTGTTTAGGCCCGTACC 59.904 50.000 0.00 0.00 0.00 3.34
1143 1665 1.741528 AATTGTTTAGGCCCGTACCG 58.258 50.000 0.00 0.00 33.69 4.02
1144 1666 0.614812 ATTGTTTAGGCCCGTACCGT 59.385 50.000 0.00 0.00 33.69 4.83
1145 1667 1.261480 TTGTTTAGGCCCGTACCGTA 58.739 50.000 0.00 0.00 33.69 4.02
1169 1691 1.078759 CGCGTTCTGATCTGGTGTCC 61.079 60.000 0.00 0.00 0.00 4.02
1208 1730 1.745087 GCTTTGATGGCGGAATTCTGA 59.255 47.619 18.72 0.00 0.00 3.27
1218 1740 3.123804 GCGGAATTCTGAGCTTCGATTA 58.876 45.455 18.72 0.00 0.00 1.75
1271 1793 2.540265 AGTCCAGCAGAGTTTGACTG 57.460 50.000 0.00 0.00 35.12 3.51
1322 1852 3.541632 GGAATCGGTTGCTCTTGGATTA 58.458 45.455 0.00 0.00 0.00 1.75
1358 1888 0.390735 GCGGACAGGACCATTACGTT 60.391 55.000 0.00 0.00 0.00 3.99
1361 1891 3.587923 CGGACAGGACCATTACGTTTAA 58.412 45.455 0.00 0.00 0.00 1.52
1366 1896 5.797051 ACAGGACCATTACGTTTAAGCTTA 58.203 37.500 0.86 0.86 0.00 3.09
1369 1899 6.592607 CAGGACCATTACGTTTAAGCTTAAGA 59.407 38.462 17.91 7.78 0.00 2.10
1402 1932 6.909550 TTTGGTTTGTGTGATAATAAGCCT 57.090 33.333 0.00 0.00 0.00 4.58
1480 2018 7.297936 ACCAATACCGATATGATGACTGTTA 57.702 36.000 0.00 0.00 0.00 2.41
1481 2019 7.732025 ACCAATACCGATATGATGACTGTTAA 58.268 34.615 0.00 0.00 0.00 2.01
1556 2100 6.475504 AGAAATGAATCATGTACACACTCCA 58.524 36.000 0.00 0.00 0.00 3.86
1562 2106 2.093711 TCATGTACACACTCCAATCCGG 60.094 50.000 0.00 0.00 0.00 5.14
1569 2113 2.040544 ACTCCAATCCGGCTTTGCG 61.041 57.895 10.51 7.03 33.14 4.85
1571 2115 3.746889 CCAATCCGGCTTTGCGCA 61.747 61.111 5.66 5.66 41.67 6.09
1580 2125 1.654220 GCTTTGCGCAACTTCCTCA 59.346 52.632 24.99 5.14 38.92 3.86
1905 2450 2.294512 CTCTTTTTCCAGGACTTGTGCC 59.705 50.000 0.00 0.00 0.00 5.01
2012 2557 0.616395 TGGACATACCTCCGGCAGAA 60.616 55.000 0.00 0.00 39.86 3.02
2084 2629 5.784750 TTCTTACACATGCATTTCTCTCG 57.215 39.130 0.00 0.00 0.00 4.04
2251 2796 6.642707 ATCTCTAACTTCTGTTCTATCCCG 57.357 41.667 0.00 0.00 37.59 5.14
2308 3016 3.009916 AGCCTCCTTGAAATGTCATGTCT 59.990 43.478 4.61 0.00 32.48 3.41
2471 3179 4.416516 TCTGTACACTTCCCTTCATCTCA 58.583 43.478 0.00 0.00 0.00 3.27
2486 3194 3.624410 TCATCTCATTCATTGGCTGAACG 59.376 43.478 0.00 0.00 46.37 3.95
2906 3614 9.730420 TCTTTTCATTTACTCTAGTTTTGTTGC 57.270 29.630 0.00 0.00 0.00 4.17
3035 3752 6.871492 TGAATTGTCTAACAGCGATAAGTGAA 59.129 34.615 0.00 0.00 0.00 3.18
3036 3753 7.549134 TGAATTGTCTAACAGCGATAAGTGAAT 59.451 33.333 0.00 0.00 0.00 2.57
3037 3754 6.647212 TTGTCTAACAGCGATAAGTGAATG 57.353 37.500 0.00 0.00 0.00 2.67
3038 3755 5.961272 TGTCTAACAGCGATAAGTGAATGA 58.039 37.500 0.00 0.00 0.00 2.57
3039 3756 6.036470 TGTCTAACAGCGATAAGTGAATGAG 58.964 40.000 0.00 0.00 0.00 2.90
3040 3757 6.127730 TGTCTAACAGCGATAAGTGAATGAGA 60.128 38.462 0.00 0.00 0.00 3.27
3041 3758 6.416455 GTCTAACAGCGATAAGTGAATGAGAG 59.584 42.308 0.00 0.00 0.00 3.20
3042 3759 4.727507 ACAGCGATAAGTGAATGAGAGT 57.272 40.909 0.00 0.00 0.00 3.24
3043 3760 5.836821 ACAGCGATAAGTGAATGAGAGTA 57.163 39.130 0.00 0.00 0.00 2.59
3366 4084 1.324383 ACCATTGGACAAACCGGAAC 58.676 50.000 9.46 0.00 42.61 3.62
3651 4370 7.896811 ACCTTTTCTTTCATTTTATCTGGGAC 58.103 34.615 0.00 0.00 0.00 4.46
3710 4429 6.302269 ACAATCTTCTCAGACATTTCTTGGT 58.698 36.000 0.00 0.00 0.00 3.67
3719 4438 5.939883 TCAGACATTTCTTGGTGGTTATGAG 59.060 40.000 0.00 0.00 0.00 2.90
3801 4522 5.926542 TGTCGGCAGATAATTGTAGATAAGC 59.073 40.000 0.00 0.00 0.00 3.09
4143 4864 3.198635 TCAGATTCCTGCCCAGAACTTAG 59.801 47.826 0.00 0.00 40.20 2.18
4244 4965 4.077300 TGGCATCATCAGATACTTCCAC 57.923 45.455 0.00 0.00 31.88 4.02
4245 4966 3.713248 TGGCATCATCAGATACTTCCACT 59.287 43.478 0.00 0.00 31.88 4.00
4249 4970 7.235399 TGGCATCATCAGATACTTCCACTAATA 59.765 37.037 0.00 0.00 31.88 0.98
4420 5190 5.305585 TCAGTTTGGTCCAATAACACTCTC 58.694 41.667 4.80 0.00 0.00 3.20
4530 5300 4.471904 TGTCTATCTTCTGCGGACATTT 57.528 40.909 0.00 0.00 32.91 2.32
4580 5350 4.644103 ACAGATTTCTACCAATGCATGC 57.356 40.909 11.82 11.82 0.00 4.06
4606 5376 5.049198 TCACTGTGCAATAAGAGCTTGAAAG 60.049 40.000 2.12 0.00 0.00 2.62
5249 6019 2.833943 CCTTTTGGGAGAAAAGATGGGG 59.166 50.000 8.19 0.00 39.04 4.96
5474 6244 7.088589 ACTAATTTGTCATGGCAATACTGTC 57.911 36.000 14.57 0.00 0.00 3.51
5533 6303 3.003275 TGCAAAAAGGTAGAGCTGTTTCG 59.997 43.478 0.00 0.00 0.00 3.46
5573 6343 5.010314 AGTTGATCATCAATTGCACTTGTGT 59.990 36.000 15.50 4.53 38.79 3.72
5576 6346 6.282167 TGATCATCAATTGCACTTGTGTTTT 58.718 32.000 15.50 0.43 0.00 2.43
6023 6793 0.909623 TCTAGCCTACCCCAACTTGC 59.090 55.000 0.00 0.00 0.00 4.01
6042 6812 1.135660 GCTTCGGACTAAAGGCTTTGC 60.136 52.381 22.32 10.48 0.00 3.68
6189 9240 9.102757 CTGCAATTACTTAGTGTTATGTCATCT 57.897 33.333 0.00 0.00 0.00 2.90
6333 9384 2.352651 CACTACTGTGCGGATTGATTGG 59.647 50.000 0.00 0.00 37.38 3.16
6421 9472 1.509373 ATGCATTCTGCTCCCTCTCT 58.491 50.000 0.00 0.00 45.31 3.10
6422 9473 0.829333 TGCATTCTGCTCCCTCTCTC 59.171 55.000 0.34 0.00 45.31 3.20
6423 9474 0.829333 GCATTCTGCTCCCTCTCTCA 59.171 55.000 0.00 0.00 40.96 3.27
6424 9475 1.473080 GCATTCTGCTCCCTCTCTCAC 60.473 57.143 0.00 0.00 40.96 3.51
6425 9476 1.829849 CATTCTGCTCCCTCTCTCACA 59.170 52.381 0.00 0.00 0.00 3.58
6426 9477 2.244486 TTCTGCTCCCTCTCTCACAT 57.756 50.000 0.00 0.00 0.00 3.21
6427 9478 2.244486 TCTGCTCCCTCTCTCACATT 57.756 50.000 0.00 0.00 0.00 2.71
6428 9479 1.829849 TCTGCTCCCTCTCTCACATTG 59.170 52.381 0.00 0.00 0.00 2.82
6429 9480 1.829849 CTGCTCCCTCTCTCACATTGA 59.170 52.381 0.00 0.00 0.00 2.57
6430 9481 1.829849 TGCTCCCTCTCTCACATTGAG 59.170 52.381 0.00 0.00 45.59 3.02
6431 9482 1.473080 GCTCCCTCTCTCACATTGAGC 60.473 57.143 0.00 0.00 43.95 4.26
6432 9483 2.109774 CTCCCTCTCTCACATTGAGCT 58.890 52.381 0.00 0.00 43.95 4.09
6433 9484 2.500910 CTCCCTCTCTCACATTGAGCTT 59.499 50.000 0.00 0.00 43.95 3.74
6434 9485 2.499289 TCCCTCTCTCACATTGAGCTTC 59.501 50.000 0.00 0.00 43.95 3.86
6435 9486 2.235650 CCCTCTCTCACATTGAGCTTCA 59.764 50.000 0.00 0.00 43.95 3.02
6436 9487 3.523547 CCTCTCTCACATTGAGCTTCAG 58.476 50.000 0.00 0.00 43.95 3.02
6437 9488 2.931325 CTCTCTCACATTGAGCTTCAGC 59.069 50.000 0.00 0.00 43.95 4.26
6455 9506 2.322371 GCTTTTGCACTGTGTAGAGC 57.678 50.000 16.01 16.01 46.58 4.09
6456 9507 1.603802 GCTTTTGCACTGTGTAGAGCA 59.396 47.619 21.90 8.15 46.52 4.26
6459 9510 2.845019 TGCACTGTGTAGAGCATGC 58.155 52.632 10.51 10.51 43.98 4.06
6460 9511 0.035176 TGCACTGTGTAGAGCATGCA 59.965 50.000 21.98 0.00 43.98 3.96
6461 9512 1.339342 TGCACTGTGTAGAGCATGCAT 60.339 47.619 21.98 10.70 43.98 3.96
6462 9513 1.329906 GCACTGTGTAGAGCATGCATC 59.670 52.381 21.98 14.18 39.86 3.91
6463 9514 2.624636 CACTGTGTAGAGCATGCATCA 58.375 47.619 21.98 10.02 0.00 3.07
6464 9515 2.350804 CACTGTGTAGAGCATGCATCAC 59.649 50.000 21.98 20.55 0.00 3.06
6465 9516 1.938577 CTGTGTAGAGCATGCATCACC 59.061 52.381 21.98 9.22 0.00 4.02
6466 9517 1.278699 TGTGTAGAGCATGCATCACCA 59.721 47.619 21.98 11.44 0.00 4.17
6467 9518 2.092807 TGTGTAGAGCATGCATCACCAT 60.093 45.455 21.98 0.00 0.00 3.55
6468 9519 2.947652 GTGTAGAGCATGCATCACCATT 59.052 45.455 21.98 0.00 0.00 3.16
6469 9520 4.129380 GTGTAGAGCATGCATCACCATTA 58.871 43.478 21.98 0.42 0.00 1.90
6470 9521 4.576053 GTGTAGAGCATGCATCACCATTAA 59.424 41.667 21.98 0.00 0.00 1.40
6471 9522 5.066375 GTGTAGAGCATGCATCACCATTAAA 59.934 40.000 21.98 0.00 0.00 1.52
6472 9523 4.644103 AGAGCATGCATCACCATTAAAC 57.356 40.909 21.98 0.00 0.00 2.01
6473 9524 4.275810 AGAGCATGCATCACCATTAAACT 58.724 39.130 21.98 0.00 0.00 2.66
6474 9525 4.337555 AGAGCATGCATCACCATTAAACTC 59.662 41.667 21.98 2.96 0.00 3.01
6475 9526 3.382546 AGCATGCATCACCATTAAACTCC 59.617 43.478 21.98 0.00 0.00 3.85
6476 9527 3.491447 GCATGCATCACCATTAAACTCCC 60.491 47.826 14.21 0.00 0.00 4.30
6477 9528 3.448093 TGCATCACCATTAAACTCCCA 57.552 42.857 0.00 0.00 0.00 4.37
6478 9529 3.088532 TGCATCACCATTAAACTCCCAC 58.911 45.455 0.00 0.00 0.00 4.61
6479 9530 2.097466 GCATCACCATTAAACTCCCACG 59.903 50.000 0.00 0.00 0.00 4.94
6480 9531 3.343617 CATCACCATTAAACTCCCACGT 58.656 45.455 0.00 0.00 0.00 4.49
6481 9532 4.509616 CATCACCATTAAACTCCCACGTA 58.490 43.478 0.00 0.00 0.00 3.57
6482 9533 4.620589 TCACCATTAAACTCCCACGTAA 57.379 40.909 0.00 0.00 0.00 3.18
6483 9534 5.168647 TCACCATTAAACTCCCACGTAAT 57.831 39.130 0.00 0.00 0.00 1.89
6484 9535 5.562635 TCACCATTAAACTCCCACGTAATT 58.437 37.500 0.00 0.00 0.00 1.40
6485 9536 5.644636 TCACCATTAAACTCCCACGTAATTC 59.355 40.000 0.00 0.00 0.00 2.17
6486 9537 5.646360 CACCATTAAACTCCCACGTAATTCT 59.354 40.000 0.00 0.00 0.00 2.40
6487 9538 6.150474 CACCATTAAACTCCCACGTAATTCTT 59.850 38.462 0.00 0.00 0.00 2.52
6488 9539 6.373495 ACCATTAAACTCCCACGTAATTCTTC 59.627 38.462 0.00 0.00 0.00 2.87
6489 9540 6.456449 CCATTAAACTCCCACGTAATTCTTCG 60.456 42.308 0.00 0.00 0.00 3.79
6490 9541 2.667473 ACTCCCACGTAATTCTTCGG 57.333 50.000 0.00 0.00 0.00 4.30
6491 9542 1.897802 ACTCCCACGTAATTCTTCGGT 59.102 47.619 0.00 0.00 0.00 4.69
6492 9543 2.268298 CTCCCACGTAATTCTTCGGTG 58.732 52.381 0.00 0.00 0.00 4.94
6493 9544 1.066716 TCCCACGTAATTCTTCGGTGG 60.067 52.381 1.62 1.62 0.00 4.61
6494 9545 1.066716 CCCACGTAATTCTTCGGTGGA 60.067 52.381 9.91 0.00 33.57 4.02
6495 9546 2.419574 CCCACGTAATTCTTCGGTGGAT 60.420 50.000 9.91 0.00 33.57 3.41
6496 9547 3.181473 CCCACGTAATTCTTCGGTGGATA 60.181 47.826 9.91 0.00 33.57 2.59
6497 9548 4.049186 CCACGTAATTCTTCGGTGGATAG 58.951 47.826 2.43 0.00 33.57 2.08
6498 9549 4.441079 CCACGTAATTCTTCGGTGGATAGT 60.441 45.833 2.43 0.00 33.57 2.12
6499 9550 5.107133 CACGTAATTCTTCGGTGGATAGTT 58.893 41.667 0.00 0.00 0.00 2.24
6500 9551 6.267817 CACGTAATTCTTCGGTGGATAGTTA 58.732 40.000 0.00 0.00 0.00 2.24
6501 9552 6.921857 CACGTAATTCTTCGGTGGATAGTTAT 59.078 38.462 0.00 0.00 0.00 1.89
6502 9553 6.921857 ACGTAATTCTTCGGTGGATAGTTATG 59.078 38.462 0.00 0.00 0.00 1.90
6503 9554 6.128902 CGTAATTCTTCGGTGGATAGTTATGC 60.129 42.308 0.00 0.00 0.00 3.14
6504 9555 4.746535 TTCTTCGGTGGATAGTTATGCA 57.253 40.909 0.00 0.00 0.00 3.96
6505 9556 4.955811 TCTTCGGTGGATAGTTATGCAT 57.044 40.909 3.79 3.79 36.43 3.96
6506 9557 5.290493 TCTTCGGTGGATAGTTATGCATT 57.710 39.130 3.54 0.00 36.43 3.56
6507 9558 5.297547 TCTTCGGTGGATAGTTATGCATTC 58.702 41.667 3.54 0.00 36.43 2.67
6508 9559 4.955811 TCGGTGGATAGTTATGCATTCT 57.044 40.909 3.54 6.92 36.43 2.40
6509 9560 4.631131 TCGGTGGATAGTTATGCATTCTG 58.369 43.478 3.54 0.00 36.43 3.02
6510 9561 3.187227 CGGTGGATAGTTATGCATTCTGC 59.813 47.826 3.54 1.75 45.29 4.26
6511 9562 4.392940 GGTGGATAGTTATGCATTCTGCT 58.607 43.478 3.54 0.85 45.31 4.24
6512 9563 4.453819 GGTGGATAGTTATGCATTCTGCTC 59.546 45.833 3.54 6.08 45.31 4.26
6513 9564 4.453819 GTGGATAGTTATGCATTCTGCTCC 59.546 45.833 3.54 14.03 45.31 4.70
6514 9565 4.006319 GGATAGTTATGCATTCTGCTCCC 58.994 47.826 3.54 0.00 45.31 4.30
6515 9566 4.263243 GGATAGTTATGCATTCTGCTCCCT 60.263 45.833 3.54 0.00 45.31 4.20
6516 9567 3.205784 AGTTATGCATTCTGCTCCCTC 57.794 47.619 3.54 0.00 45.31 4.30
6517 9568 2.776536 AGTTATGCATTCTGCTCCCTCT 59.223 45.455 3.54 0.00 45.31 3.69
6518 9569 3.137533 GTTATGCATTCTGCTCCCTCTC 58.862 50.000 3.54 0.00 45.31 3.20
6920 9971 6.923508 CCACTCTTTTGAATTTAGGGACAAAC 59.076 38.462 0.00 0.00 33.09 2.93
6922 9976 7.649306 CACTCTTTTGAATTTAGGGACAAACAG 59.351 37.037 0.00 0.00 33.09 3.16
7019 10074 2.066262 AGTACGTTGCTGACAATTCCG 58.934 47.619 0.00 0.00 38.27 4.30
7214 10269 1.381928 TAGCAGTAGGAAGACGGGCG 61.382 60.000 0.00 0.00 32.10 6.13
7218 10273 1.108132 AGTAGGAAGACGGGCGATCC 61.108 60.000 0.89 0.89 0.00 3.36
7328 10384 8.302515 AGCAAACATTTTATCTGGAATCATCT 57.697 30.769 0.00 0.00 0.00 2.90
7373 10430 4.031652 GCAAACATTCTATCGCGCAATTTT 59.968 37.500 8.75 0.00 0.00 1.82
7488 10545 6.364435 GTGTCTGCATCATCTTTTTCTTTTCC 59.636 38.462 0.00 0.00 0.00 3.13
7555 10612 8.389603 GTTCTTTTCTCATGAGATCTGATGAAC 58.610 37.037 25.64 24.00 37.29 3.18
7556 10613 7.849160 TCTTTTCTCATGAGATCTGATGAACT 58.151 34.615 25.64 0.00 37.29 3.01
7557 10614 8.975295 TCTTTTCTCATGAGATCTGATGAACTA 58.025 33.333 25.64 10.78 37.29 2.24
7558 10615 9.251792 CTTTTCTCATGAGATCTGATGAACTAG 57.748 37.037 25.64 12.96 37.29 2.57
7869 10927 2.088423 CGACACAAGAGCTACTCCTCT 58.912 52.381 0.00 0.00 43.81 3.69
8138 11196 3.322828 GGTGCGGTAATAAGATGGAGGTA 59.677 47.826 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.202932 CGGCTGCCATCTTAGCGT 60.203 61.111 20.29 0.00 40.78 5.07
105 106 2.667536 AGCAACAGCTGTCGCCAG 60.668 61.111 25.71 11.71 41.91 4.85
141 143 3.488489 ACAAAATCAATTAGCACGACGC 58.512 40.909 0.00 0.00 42.91 5.19
189 191 6.663734 CACTAGAAGGTGGGATAAAGGAAAT 58.336 40.000 0.00 0.00 33.95 2.17
196 198 3.199946 CCTTGCACTAGAAGGTGGGATAA 59.800 47.826 0.00 0.00 36.05 1.75
214 216 2.747446 CCCACGAACTGATTTACCCTTG 59.253 50.000 0.00 0.00 0.00 3.61
318 321 8.089625 TGTGAATTATGGAAGGTAGAAGATGA 57.910 34.615 0.00 0.00 0.00 2.92
401 404 1.546476 TGCAACCTTGACAAACGGTTT 59.454 42.857 8.70 0.00 38.90 3.27
405 408 2.772568 TGATGCAACCTTGACAAACG 57.227 45.000 0.00 0.00 0.00 3.60
587 600 7.703058 AGTGAAAAATGTATGTCCCTAAAGG 57.297 36.000 0.00 0.00 0.00 3.11
595 608 6.806739 GGTTTGCCTAGTGAAAAATGTATGTC 59.193 38.462 0.00 0.00 0.00 3.06
631 644 3.379057 GGAGTGACGAGGAAAACCAAAAA 59.621 43.478 0.00 0.00 0.00 1.94
713 1231 7.860649 TTACTTTACAGTCCCTCTAAAGGAA 57.139 36.000 0.00 0.00 38.55 3.36
714 1232 7.899709 AGATTACTTTACAGTCCCTCTAAAGGA 59.100 37.037 0.00 0.00 38.55 3.36
768 1286 4.119442 TCCCGTTTTATCTTCTCTTCGG 57.881 45.455 0.00 0.00 37.04 4.30
898 1420 1.918800 GACACCTGGGCCCAGTACT 60.919 63.158 42.69 27.42 42.15 2.73
940 1462 2.933834 ACAGTTTCGGGGGAGGGG 60.934 66.667 0.00 0.00 0.00 4.79
1076 1598 3.226242 AGTGGGCACTCACGTGAA 58.774 55.556 20.49 0.00 43.97 3.18
1141 1663 0.595053 ATCAGAACGCGCAGATACGG 60.595 55.000 5.73 0.00 0.00 4.02
1142 1664 0.772926 GATCAGAACGCGCAGATACG 59.227 55.000 5.73 0.00 0.00 3.06
1143 1665 1.783711 CAGATCAGAACGCGCAGATAC 59.216 52.381 5.73 0.00 0.00 2.24
1144 1666 1.269257 CCAGATCAGAACGCGCAGATA 60.269 52.381 5.73 0.00 0.00 1.98
1145 1667 0.529337 CCAGATCAGAACGCGCAGAT 60.529 55.000 5.73 4.22 0.00 2.90
1169 1691 0.515564 CGCGGAAATTATTAGGCCGG 59.484 55.000 0.00 0.00 42.09 6.13
1208 1730 6.016777 GGATTTGACATTCCATAATCGAAGCT 60.017 38.462 0.00 0.00 31.99 3.74
1218 1740 5.197224 TCCAAGAGGATTTGACATTCCAT 57.803 39.130 7.49 0.00 39.61 3.41
1274 1796 2.758770 TACTGACTCGCCAACGGTGC 62.759 60.000 0.00 0.00 40.63 5.01
1275 1797 0.319211 TTACTGACTCGCCAACGGTG 60.319 55.000 0.00 0.00 40.63 4.94
1322 1852 0.320247 CGCTCACTTCAAGTGGAGCT 60.320 55.000 26.05 0.00 45.94 4.09
1332 1862 1.079750 GGTCCTGTCCGCTCACTTC 60.080 63.158 0.00 0.00 0.00 3.01
1340 1870 2.088950 AAACGTAATGGTCCTGTCCG 57.911 50.000 0.00 0.00 0.00 4.79
1358 1888 8.113462 ACCAAATCCTACCAATCTTAAGCTTAA 58.887 33.333 17.71 17.71 0.00 1.85
1361 1891 6.079712 ACCAAATCCTACCAATCTTAAGCT 57.920 37.500 0.00 0.00 0.00 3.74
1366 1896 5.838521 ACACAAACCAAATCCTACCAATCTT 59.161 36.000 0.00 0.00 0.00 2.40
1369 1899 5.144100 TCACACAAACCAAATCCTACCAAT 58.856 37.500 0.00 0.00 0.00 3.16
1402 1932 2.300152 CTCTCTAACTGCCAGTTCACCA 59.700 50.000 14.46 0.00 39.51 4.17
1453 1991 6.706270 ACAGTCATCATATCGGTATTGGTTTC 59.294 38.462 0.00 0.00 0.00 2.78
1480 2018 9.760077 CATAAGGGTGTAGATACTTAAATCGTT 57.240 33.333 0.00 0.00 0.00 3.85
1481 2019 9.139734 TCATAAGGGTGTAGATACTTAAATCGT 57.860 33.333 0.00 0.00 0.00 3.73
1569 2113 0.606673 GACTGGGGTGAGGAAGTTGC 60.607 60.000 0.00 0.00 0.00 4.17
1571 2115 2.258109 GTAGACTGGGGTGAGGAAGTT 58.742 52.381 0.00 0.00 0.00 2.66
1580 2125 4.975147 TGGATATCATTTGTAGACTGGGGT 59.025 41.667 4.83 0.00 0.00 4.95
1812 2357 2.158986 ACGATTCAGCAGAAGGGATCAG 60.159 50.000 0.00 0.00 37.14 2.90
1905 2450 4.098501 GGTTAAGAAAGCCATGAATCAGGG 59.901 45.833 9.92 9.92 38.46 4.45
2084 2629 4.692228 CAGAACCTGATTCCTCTAAGCTC 58.308 47.826 0.00 0.00 38.16 4.09
2239 2784 4.248859 CCATGCTTATCGGGATAGAACAG 58.751 47.826 0.00 0.00 0.00 3.16
2251 2796 2.656947 TTGTAGGGCCCATGCTTATC 57.343 50.000 27.56 5.12 37.74 1.75
2308 3016 5.070001 CCCTGTTTCCTGAAATCAGTACAA 58.930 41.667 9.43 0.00 42.27 2.41
2366 3074 6.033091 CGGAACAACACCTAAAATATTTTCGC 59.967 38.462 16.56 0.00 0.00 4.70
2897 3605 6.316440 ATTCATTGGAAATGGCAACAAAAC 57.684 33.333 0.00 0.00 42.71 2.43
2906 3614 5.111293 GCCTGTTGTATTCATTGGAAATGG 58.889 41.667 0.42 0.00 36.43 3.16
3043 3760 9.474313 AGAGACTCTGACTATAAAACTCTCATT 57.526 33.333 3.56 0.00 0.00 2.57
3366 4084 7.821595 TCTCATGTTAACGTACCATTTGTAG 57.178 36.000 0.00 0.00 0.00 2.74
3651 4370 2.890311 TCACCACACTGCCCAAATAAAG 59.110 45.455 0.00 0.00 0.00 1.85
3710 4429 3.976015 GGGGGAAACAATCTCATAACCA 58.024 45.455 0.00 0.00 0.00 3.67
3740 4459 3.316308 GGGATGGTCATGCAGATGTAAAC 59.684 47.826 4.93 0.00 0.00 2.01
4143 4864 1.432270 CCTCGGAGGCGCTTCATTTC 61.432 60.000 21.86 2.57 0.00 2.17
4184 4905 7.158697 TGAGTACAAATAAGCAGCTGAGTAAA 58.841 34.615 20.43 0.00 0.00 2.01
4185 4906 6.697395 TGAGTACAAATAAGCAGCTGAGTAA 58.303 36.000 20.43 0.00 0.00 2.24
4225 4946 7.547370 GGTATTAGTGGAAGTATCTGATGATGC 59.453 40.741 0.00 0.00 35.87 3.91
4244 4965 0.601311 GGCGGCTGAGCAGGTATTAG 60.601 60.000 6.82 0.00 39.27 1.73
4245 4966 1.048724 AGGCGGCTGAGCAGGTATTA 61.049 55.000 12.25 0.00 39.27 0.98
4249 4970 3.909086 GAAAGGCGGCTGAGCAGGT 62.909 63.158 14.21 0.00 39.27 4.00
4580 5350 2.341257 AGCTCTTATTGCACAGTGACG 58.659 47.619 4.15 0.00 0.00 4.35
4606 5376 6.329496 TGCCAGCTGTTATTGCTTTAATTAC 58.671 36.000 13.81 0.00 38.92 1.89
5249 6019 5.102313 GCAACAATTAGCATTACCTTGTCC 58.898 41.667 0.00 0.00 0.00 4.02
5456 6226 2.620367 GGGGACAGTATTGCCATGACAA 60.620 50.000 0.00 0.00 0.00 3.18
5474 6244 0.037590 TGTCCCGATGAAAGTTGGGG 59.962 55.000 0.00 0.00 42.36 4.96
5533 6303 1.684983 CAACTGGCCATCCCATCATTC 59.315 52.381 5.51 0.00 44.33 2.67
5576 6346 8.830580 GGAAATCGATTCTTATGAACAGATGAA 58.169 33.333 11.83 0.00 38.18 2.57
5908 6678 6.932356 TTGAATAATCTCTGGCAACTGATC 57.068 37.500 0.00 0.00 44.16 2.92
5977 6747 3.695830 ACCCGTAAGATCTCAAAAGCA 57.304 42.857 0.00 0.00 43.02 3.91
5993 6763 1.112113 TAGGCTAGAGCTGAAACCCG 58.888 55.000 0.00 0.00 41.70 5.28
6023 6793 2.160417 CAGCAAAGCCTTTAGTCCGAAG 59.840 50.000 0.00 0.00 0.00 3.79
6042 6812 5.695851 AAAAGATGGCTAAGTCACAACAG 57.304 39.130 0.00 0.00 0.00 3.16
6189 9240 2.233676 TCTGCTATGAGTTCGGCTTTCA 59.766 45.455 0.00 0.00 0.00 2.69
6276 9327 8.632679 CCATCATAACATAAAGCCATAACACTT 58.367 33.333 0.00 0.00 0.00 3.16
6333 9384 5.333416 GCTCTACACAGTGCAAACTTAAGAC 60.333 44.000 10.09 0.00 40.31 3.01
6430 9481 1.202336 ACACAGTGCAAAAGCTGAAGC 60.202 47.619 8.88 0.00 42.49 3.86
6431 9482 2.857592 ACACAGTGCAAAAGCTGAAG 57.142 45.000 8.88 4.03 36.62 3.02
6432 9483 3.540617 TCTACACAGTGCAAAAGCTGAA 58.459 40.909 8.88 0.00 36.62 3.02
6433 9484 3.133691 CTCTACACAGTGCAAAAGCTGA 58.866 45.455 8.88 0.00 36.62 4.26
6434 9485 2.350197 GCTCTACACAGTGCAAAAGCTG 60.350 50.000 0.00 0.75 40.31 4.24
6435 9486 1.876156 GCTCTACACAGTGCAAAAGCT 59.124 47.619 0.00 0.00 40.31 3.74
6436 9487 1.603802 TGCTCTACACAGTGCAAAAGC 59.396 47.619 0.00 5.72 45.63 3.51
6442 9493 1.329906 GATGCATGCTCTACACAGTGC 59.670 52.381 20.33 0.00 40.85 4.40
6443 9494 2.350804 GTGATGCATGCTCTACACAGTG 59.649 50.000 20.33 0.00 0.00 3.66
6444 9495 2.625737 GTGATGCATGCTCTACACAGT 58.374 47.619 20.33 0.00 0.00 3.55
6445 9496 1.938577 GGTGATGCATGCTCTACACAG 59.061 52.381 20.33 0.00 0.00 3.66
6446 9497 1.278699 TGGTGATGCATGCTCTACACA 59.721 47.619 20.33 8.24 0.00 3.72
6447 9498 2.028420 TGGTGATGCATGCTCTACAC 57.972 50.000 20.33 20.13 0.00 2.90
6448 9499 3.286329 AATGGTGATGCATGCTCTACA 57.714 42.857 20.33 15.28 0.00 2.74
6449 9500 5.297776 AGTTTAATGGTGATGCATGCTCTAC 59.702 40.000 20.33 13.86 0.00 2.59
6450 9501 5.439721 AGTTTAATGGTGATGCATGCTCTA 58.560 37.500 20.33 0.00 0.00 2.43
6451 9502 4.275810 AGTTTAATGGTGATGCATGCTCT 58.724 39.130 20.33 6.11 0.00 4.09
6452 9503 4.498682 GGAGTTTAATGGTGATGCATGCTC 60.499 45.833 20.33 13.98 0.00 4.26
6453 9504 3.382546 GGAGTTTAATGGTGATGCATGCT 59.617 43.478 20.33 4.11 0.00 3.79
6454 9505 3.491447 GGGAGTTTAATGGTGATGCATGC 60.491 47.826 11.82 11.82 0.00 4.06
6455 9506 3.700539 TGGGAGTTTAATGGTGATGCATG 59.299 43.478 2.46 0.00 0.00 4.06
6456 9507 3.701040 GTGGGAGTTTAATGGTGATGCAT 59.299 43.478 0.00 0.00 0.00 3.96
6457 9508 3.088532 GTGGGAGTTTAATGGTGATGCA 58.911 45.455 0.00 0.00 0.00 3.96
6458 9509 2.097466 CGTGGGAGTTTAATGGTGATGC 59.903 50.000 0.00 0.00 0.00 3.91
6459 9510 3.343617 ACGTGGGAGTTTAATGGTGATG 58.656 45.455 0.00 0.00 0.00 3.07
6460 9511 3.713826 ACGTGGGAGTTTAATGGTGAT 57.286 42.857 0.00 0.00 0.00 3.06
6461 9512 4.620589 TTACGTGGGAGTTTAATGGTGA 57.379 40.909 0.00 0.00 0.00 4.02
6462 9513 5.646360 AGAATTACGTGGGAGTTTAATGGTG 59.354 40.000 0.00 0.00 0.00 4.17
6463 9514 5.812286 AGAATTACGTGGGAGTTTAATGGT 58.188 37.500 0.00 0.00 0.00 3.55
6464 9515 6.456449 CGAAGAATTACGTGGGAGTTTAATGG 60.456 42.308 0.00 0.00 0.00 3.16
6465 9516 6.456449 CCGAAGAATTACGTGGGAGTTTAATG 60.456 42.308 0.00 0.00 0.00 1.90
6466 9517 5.583457 CCGAAGAATTACGTGGGAGTTTAAT 59.417 40.000 0.00 0.00 0.00 1.40
6467 9518 4.931002 CCGAAGAATTACGTGGGAGTTTAA 59.069 41.667 0.00 0.00 0.00 1.52
6468 9519 4.021192 ACCGAAGAATTACGTGGGAGTTTA 60.021 41.667 0.00 0.00 31.42 2.01
6469 9520 3.244318 ACCGAAGAATTACGTGGGAGTTT 60.244 43.478 0.00 0.00 31.42 2.66
6470 9521 2.301009 ACCGAAGAATTACGTGGGAGTT 59.699 45.455 0.00 0.00 31.42 3.01
6471 9522 1.897802 ACCGAAGAATTACGTGGGAGT 59.102 47.619 0.00 0.00 31.42 3.85
6472 9523 2.268298 CACCGAAGAATTACGTGGGAG 58.732 52.381 0.00 0.00 31.42 4.30
6473 9524 1.066716 CCACCGAAGAATTACGTGGGA 60.067 52.381 0.00 0.00 32.04 4.37
6474 9525 1.066716 TCCACCGAAGAATTACGTGGG 60.067 52.381 0.00 0.00 34.33 4.61
6475 9526 2.373540 TCCACCGAAGAATTACGTGG 57.626 50.000 0.00 0.00 34.60 4.94
6476 9527 4.679662 ACTATCCACCGAAGAATTACGTG 58.320 43.478 0.00 0.00 0.00 4.49
6477 9528 4.996788 ACTATCCACCGAAGAATTACGT 57.003 40.909 0.00 0.00 0.00 3.57
6478 9529 6.128902 GCATAACTATCCACCGAAGAATTACG 60.129 42.308 0.00 0.00 0.00 3.18
6479 9530 6.704493 TGCATAACTATCCACCGAAGAATTAC 59.296 38.462 0.00 0.00 0.00 1.89
6480 9531 6.822442 TGCATAACTATCCACCGAAGAATTA 58.178 36.000 0.00 0.00 0.00 1.40
6481 9532 5.680619 TGCATAACTATCCACCGAAGAATT 58.319 37.500 0.00 0.00 0.00 2.17
6482 9533 5.290493 TGCATAACTATCCACCGAAGAAT 57.710 39.130 0.00 0.00 0.00 2.40
6483 9534 4.746535 TGCATAACTATCCACCGAAGAA 57.253 40.909 0.00 0.00 0.00 2.52
6484 9535 4.955811 ATGCATAACTATCCACCGAAGA 57.044 40.909 0.00 0.00 0.00 2.87
6485 9536 5.178252 CAGAATGCATAACTATCCACCGAAG 59.822 44.000 0.00 0.00 0.00 3.79
6486 9537 5.056480 CAGAATGCATAACTATCCACCGAA 58.944 41.667 0.00 0.00 0.00 4.30
6487 9538 4.631131 CAGAATGCATAACTATCCACCGA 58.369 43.478 0.00 0.00 0.00 4.69
6488 9539 4.997905 CAGAATGCATAACTATCCACCG 57.002 45.455 0.00 0.00 0.00 4.94
6503 9554 1.829849 TGTGAGAGAGGGAGCAGAATG 59.170 52.381 0.00 0.00 40.87 2.67
6504 9555 2.244486 TGTGAGAGAGGGAGCAGAAT 57.756 50.000 0.00 0.00 0.00 2.40
6505 9556 2.235650 CAATGTGAGAGAGGGAGCAGAA 59.764 50.000 0.00 0.00 0.00 3.02
6506 9557 1.829849 CAATGTGAGAGAGGGAGCAGA 59.170 52.381 0.00 0.00 0.00 4.26
6507 9558 1.829849 TCAATGTGAGAGAGGGAGCAG 59.170 52.381 0.00 0.00 0.00 4.24
6508 9559 1.942776 TCAATGTGAGAGAGGGAGCA 58.057 50.000 0.00 0.00 0.00 4.26
6886 9937 4.998671 TTCAAAAGAGTGGACAAATGCA 57.001 36.364 0.00 0.00 0.00 3.96
6941 9995 6.683974 TCTAATAAAATGAAGGAGCAGCAC 57.316 37.500 0.00 0.00 0.00 4.40
7019 10074 6.470877 TCAACGCAAACAAGAAAACATTAGTC 59.529 34.615 0.00 0.00 0.00 2.59
7173 10228 5.199424 ACGTCTGTTGTATTTATCGTTGC 57.801 39.130 0.00 0.00 0.00 4.17
7214 10269 1.070445 CCTCCTGTCGCATGGGATC 59.930 63.158 16.24 10.06 0.00 3.36
7218 10273 0.179048 TATTGCCTCCTGTCGCATGG 60.179 55.000 0.00 0.00 34.35 3.66
7224 10279 5.357878 TGAAATCACAATATTGCCTCCTGTC 59.642 40.000 15.48 5.50 0.00 3.51
7225 10280 5.263599 TGAAATCACAATATTGCCTCCTGT 58.736 37.500 15.48 0.00 0.00 4.00
7328 10384 5.428457 TGCTTTCAGATGGGACCTTCTATTA 59.572 40.000 6.45 0.00 0.00 0.98
7373 10430 2.299867 TCATGCAGTAGTTCAGACAGCA 59.700 45.455 0.00 0.00 34.78 4.41
7412 10469 3.371965 ACCGTCCATGTATTGTACTCCT 58.628 45.455 0.00 0.00 0.00 3.69
7555 10612 3.321497 GACTGCTCACCTGTTTCACTAG 58.679 50.000 0.00 0.00 0.00 2.57
7556 10613 2.288213 CGACTGCTCACCTGTTTCACTA 60.288 50.000 0.00 0.00 0.00 2.74
7557 10614 1.539065 CGACTGCTCACCTGTTTCACT 60.539 52.381 0.00 0.00 0.00 3.41
7558 10615 0.861837 CGACTGCTCACCTGTTTCAC 59.138 55.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.