Multiple sequence alignment - TraesCS2D01G307600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G307600 chr2D 100.000 6516 0 0 1 6516 394542014 394535499 0.000000e+00 12033
1 TraesCS2D01G307600 chr2D 86.116 605 55 11 2471 3066 30416825 30417409 5.550000e-175 625
2 TraesCS2D01G307600 chr2D 93.766 385 19 5 1 384 90805207 90805587 2.040000e-159 573
3 TraesCS2D01G307600 chr2D 85.159 566 63 9 2519 3079 463922370 463922919 1.590000e-155 560
4 TraesCS2D01G307600 chr2D 87.464 343 37 5 2436 2773 29684358 29684699 2.200000e-104 390
5 TraesCS2D01G307600 chr2A 97.342 3725 62 15 2418 6116 532494956 532491243 0.000000e+00 6296
6 TraesCS2D01G307600 chr2A 90.157 1717 73 38 736 2421 532496729 532495078 0.000000e+00 2146
7 TraesCS2D01G307600 chr2A 86.039 616 59 7 2918 3531 702297895 702298485 2.560000e-178 636
8 TraesCS2D01G307600 chr2B 94.263 3695 106 48 2878 6481 466192822 466189143 0.000000e+00 5552
9 TraesCS2D01G307600 chr2B 93.057 2319 87 16 597 2910 466195071 466192822 0.000000e+00 3323
10 TraesCS2D01G307600 chr2B 84.480 625 61 12 2918 3531 671352627 671353226 9.410000e-163 584
11 TraesCS2D01G307600 chr2B 93.923 181 6 4 383 563 466195610 466195435 1.080000e-67 268
12 TraesCS2D01G307600 chr2B 82.072 251 28 9 2826 3076 209135497 209135730 1.430000e-46 198
13 TraesCS2D01G307600 chr5B 86.035 623 68 11 2457 3077 493087897 493087292 0.000000e+00 651
14 TraesCS2D01G307600 chr5B 84.220 564 68 9 2519 3077 430286104 430285557 4.470000e-146 529
15 TraesCS2D01G307600 chr1D 94.805 385 17 3 1 384 226833540 226833158 1.210000e-166 597
16 TraesCS2D01G307600 chr1D 92.208 385 24 6 1 385 461042323 461041945 2.070000e-149 540
17 TraesCS2D01G307600 chr5A 83.876 645 74 14 2434 3077 194768581 194767966 7.280000e-164 588
18 TraesCS2D01G307600 chr5A 81.961 255 30 8 2823 3077 154481972 154481734 1.110000e-47 202
19 TraesCS2D01G307600 chr6D 93.506 385 21 4 1 384 35497988 35497607 2.640000e-158 569
20 TraesCS2D01G307600 chr6D 90.909 385 33 2 1 384 31845380 31844997 3.480000e-142 516
21 TraesCS2D01G307600 chr6D 84.806 283 32 5 2716 2997 465352196 465351924 2.310000e-69 274
22 TraesCS2D01G307600 chr4D 93.506 385 19 5 1 384 118419361 118418982 9.480000e-158 568
23 TraesCS2D01G307600 chr5D 93.247 385 19 6 1 384 509975546 509975168 1.590000e-155 560
24 TraesCS2D01G307600 chr5D 91.429 385 29 4 1 384 458756482 458756863 5.790000e-145 525
25 TraesCS2D01G307600 chr6A 85.932 526 59 7 2553 3077 97749424 97748913 1.240000e-151 547
26 TraesCS2D01G307600 chr6A 84.046 351 47 8 2436 2781 78028208 78028554 4.870000e-86 329
27 TraesCS2D01G307600 chr1B 91.406 384 27 6 2 384 649197276 649196898 7.490000e-144 521
28 TraesCS2D01G307600 chr4A 84.900 351 44 8 2436 2781 94766856 94767202 4.840000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G307600 chr2D 394535499 394542014 6515 True 12033.000000 12033 100.000000 1 6516 1 chr2D.!!$R1 6515
1 TraesCS2D01G307600 chr2D 30416825 30417409 584 False 625.000000 625 86.116000 2471 3066 1 chr2D.!!$F2 595
2 TraesCS2D01G307600 chr2D 463922370 463922919 549 False 560.000000 560 85.159000 2519 3079 1 chr2D.!!$F4 560
3 TraesCS2D01G307600 chr2A 532491243 532496729 5486 True 4221.000000 6296 93.749500 736 6116 2 chr2A.!!$R1 5380
4 TraesCS2D01G307600 chr2A 702297895 702298485 590 False 636.000000 636 86.039000 2918 3531 1 chr2A.!!$F1 613
5 TraesCS2D01G307600 chr2B 466189143 466195610 6467 True 3047.666667 5552 93.747667 383 6481 3 chr2B.!!$R1 6098
6 TraesCS2D01G307600 chr2B 671352627 671353226 599 False 584.000000 584 84.480000 2918 3531 1 chr2B.!!$F2 613
7 TraesCS2D01G307600 chr5B 493087292 493087897 605 True 651.000000 651 86.035000 2457 3077 1 chr5B.!!$R2 620
8 TraesCS2D01G307600 chr5B 430285557 430286104 547 True 529.000000 529 84.220000 2519 3077 1 chr5B.!!$R1 558
9 TraesCS2D01G307600 chr5A 194767966 194768581 615 True 588.000000 588 83.876000 2434 3077 1 chr5A.!!$R2 643
10 TraesCS2D01G307600 chr6A 97748913 97749424 511 True 547.000000 547 85.932000 2553 3077 1 chr6A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.039911 AGAGACTCCGGCAGTAGGTT 59.960 55.0 0.00 0.0 34.41 3.50 F
575 576 0.105709 CTCCCCTCTCCTCCTCCTTC 60.106 65.0 0.00 0.0 0.00 3.46 F
673 1004 0.381801 CAAGCCAACACACACCTCAC 59.618 55.0 0.00 0.0 0.00 3.51 F
677 1008 0.535102 CCAACACACACCTCACCCTC 60.535 60.0 0.00 0.0 0.00 4.30 F
679 1010 0.694444 AACACACACCTCACCCTCCT 60.694 55.0 0.00 0.0 0.00 3.69 F
1109 1453 0.854218 TTGGGGGAACTGCTTTGGTA 59.146 50.0 0.00 0.0 0.00 3.25 F
2571 3065 0.246635 GTCCTGAGCCGCAAGAACTA 59.753 55.0 0.00 0.0 43.02 2.24 F
3311 3869 0.958822 AAAATGGTGAGTTGCGGGTC 59.041 50.0 0.00 0.0 0.00 4.46 F
4388 4978 0.250295 TGGTTCCAGAACTTGCTCCG 60.250 55.0 10.19 0.0 40.94 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1876 0.525455 TCGATTGACTGGATCACGCG 60.525 55.000 3.53 3.53 36.92 6.01 R
1674 2025 0.944386 CCCAACTGAAGTGTCCGTTG 59.056 55.000 4.58 4.58 44.30 4.10 R
2094 2460 2.224314 GTCAAGCTGCTGGTTTGTAGAC 59.776 50.000 1.35 6.63 37.41 2.59 R
2201 2567 3.141398 CAAGCAAAGAGGTTACAGCAGA 58.859 45.455 0.00 0.00 35.88 4.26 R
2562 3056 3.317993 TGGTGCCTTTTTCTAGTTCTTGC 59.682 43.478 0.00 0.00 0.00 4.01 R
3021 3565 1.563879 CCAGACAGAGGGAGAGAGAGA 59.436 57.143 0.00 0.00 0.00 3.10 R
3692 4282 0.457443 GCCATCCCAGTTAAGCAAGC 59.543 55.000 0.00 0.00 0.00 4.01 R
4595 5185 0.034059 CTCGAGCCTGTTGTGGTTCT 59.966 55.000 0.00 0.00 35.55 3.01 R
5765 6381 1.001815 GTAGCAAGCAACGAAGGCAAA 60.002 47.619 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.841595 GGGGAGAGTGTAGGGGATG 58.158 63.158 0.00 0.00 0.00 3.51
19 20 0.264955 GGGGAGAGTGTAGGGGATGA 59.735 60.000 0.00 0.00 0.00 2.92
20 21 1.710816 GGGAGAGTGTAGGGGATGAG 58.289 60.000 0.00 0.00 0.00 2.90
21 22 1.218196 GGGAGAGTGTAGGGGATGAGA 59.782 57.143 0.00 0.00 0.00 3.27
22 23 2.593026 GGAGAGTGTAGGGGATGAGAG 58.407 57.143 0.00 0.00 0.00 3.20
23 24 2.175931 GGAGAGTGTAGGGGATGAGAGA 59.824 54.545 0.00 0.00 0.00 3.10
24 25 3.486383 GAGAGTGTAGGGGATGAGAGAG 58.514 54.545 0.00 0.00 0.00 3.20
25 26 2.176798 AGAGTGTAGGGGATGAGAGAGG 59.823 54.545 0.00 0.00 0.00 3.69
26 27 1.219213 AGTGTAGGGGATGAGAGAGGG 59.781 57.143 0.00 0.00 0.00 4.30
27 28 0.105453 TGTAGGGGATGAGAGAGGGC 60.105 60.000 0.00 0.00 0.00 5.19
28 29 1.153989 TAGGGGATGAGAGAGGGCG 59.846 63.158 0.00 0.00 0.00 6.13
29 30 1.361176 TAGGGGATGAGAGAGGGCGA 61.361 60.000 0.00 0.00 0.00 5.54
30 31 2.206536 GGGGATGAGAGAGGGCGAG 61.207 68.421 0.00 0.00 0.00 5.03
31 32 1.456705 GGGATGAGAGAGGGCGAGT 60.457 63.158 0.00 0.00 0.00 4.18
32 33 1.045911 GGGATGAGAGAGGGCGAGTT 61.046 60.000 0.00 0.00 0.00 3.01
33 34 0.103937 GGATGAGAGAGGGCGAGTTG 59.896 60.000 0.00 0.00 0.00 3.16
34 35 0.103937 GATGAGAGAGGGCGAGTTGG 59.896 60.000 0.00 0.00 0.00 3.77
35 36 0.324738 ATGAGAGAGGGCGAGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
36 37 0.967887 TGAGAGAGGGCGAGTTGGAG 60.968 60.000 0.00 0.00 0.00 3.86
37 38 2.185608 GAGAGGGCGAGTTGGAGC 59.814 66.667 0.00 0.00 0.00 4.70
38 39 2.604686 AGAGGGCGAGTTGGAGCA 60.605 61.111 0.00 0.00 34.54 4.26
39 40 2.172483 GAGAGGGCGAGTTGGAGCAA 62.172 60.000 0.00 0.00 34.54 3.91
40 41 2.032681 AGGGCGAGTTGGAGCAAC 59.967 61.111 0.00 0.00 43.83 4.17
51 52 3.996480 GTTGGAGCAACTACTCTGTTCT 58.004 45.455 0.00 0.00 40.73 3.01
52 53 4.381411 GTTGGAGCAACTACTCTGTTCTT 58.619 43.478 0.00 0.00 40.73 2.52
53 54 4.258702 TGGAGCAACTACTCTGTTCTTC 57.741 45.455 0.00 0.00 36.87 2.87
54 55 3.246619 GGAGCAACTACTCTGTTCTTCG 58.753 50.000 0.00 0.00 36.87 3.79
55 56 3.305471 GGAGCAACTACTCTGTTCTTCGT 60.305 47.826 0.00 0.00 36.87 3.85
56 57 3.643763 AGCAACTACTCTGTTCTTCGTG 58.356 45.455 0.00 0.00 0.00 4.35
57 58 2.731976 GCAACTACTCTGTTCTTCGTGG 59.268 50.000 0.00 0.00 0.00 4.94
58 59 3.799232 GCAACTACTCTGTTCTTCGTGGT 60.799 47.826 0.00 0.00 0.00 4.16
59 60 4.558095 GCAACTACTCTGTTCTTCGTGGTA 60.558 45.833 0.00 0.00 0.00 3.25
60 61 5.154932 CAACTACTCTGTTCTTCGTGGTAG 58.845 45.833 0.00 0.00 33.62 3.18
61 62 3.757493 ACTACTCTGTTCTTCGTGGTAGG 59.243 47.826 0.00 0.00 32.24 3.18
62 63 1.893801 ACTCTGTTCTTCGTGGTAGGG 59.106 52.381 0.00 0.00 0.00 3.53
63 64 1.204941 CTCTGTTCTTCGTGGTAGGGG 59.795 57.143 0.00 0.00 0.00 4.79
64 65 0.249398 CTGTTCTTCGTGGTAGGGGG 59.751 60.000 0.00 0.00 0.00 5.40
65 66 1.078637 GTTCTTCGTGGTAGGGGGC 60.079 63.158 0.00 0.00 0.00 5.80
66 67 2.652095 TTCTTCGTGGTAGGGGGCG 61.652 63.158 0.00 0.00 0.00 6.13
67 68 4.157120 CTTCGTGGTAGGGGGCGG 62.157 72.222 0.00 0.00 0.00 6.13
117 118 2.202905 CGGCCCGCGGTTTGTATA 60.203 61.111 26.12 0.00 0.00 1.47
118 119 1.595929 CGGCCCGCGGTTTGTATAT 60.596 57.895 26.12 0.00 0.00 0.86
119 120 1.837538 CGGCCCGCGGTTTGTATATG 61.838 60.000 26.12 6.10 0.00 1.78
120 121 1.281656 GCCCGCGGTTTGTATATGC 59.718 57.895 26.12 13.15 0.00 3.14
121 122 1.946267 CCCGCGGTTTGTATATGCC 59.054 57.895 26.12 0.00 0.00 4.40
122 123 1.512156 CCCGCGGTTTGTATATGCCC 61.512 60.000 26.12 0.00 0.00 5.36
123 124 0.816018 CCGCGGTTTGTATATGCCCA 60.816 55.000 19.50 0.00 0.00 5.36
124 125 0.306533 CGCGGTTTGTATATGCCCAC 59.693 55.000 0.00 0.00 0.00 4.61
125 126 1.384525 GCGGTTTGTATATGCCCACA 58.615 50.000 0.00 0.00 0.00 4.17
126 127 1.064952 GCGGTTTGTATATGCCCACAC 59.935 52.381 0.00 0.00 0.00 3.82
127 128 1.673920 CGGTTTGTATATGCCCACACC 59.326 52.381 0.00 0.00 0.00 4.16
128 129 2.028876 GGTTTGTATATGCCCACACCC 58.971 52.381 0.00 0.00 0.00 4.61
129 130 2.357777 GGTTTGTATATGCCCACACCCT 60.358 50.000 0.00 0.00 0.00 4.34
130 131 3.117813 GGTTTGTATATGCCCACACCCTA 60.118 47.826 0.00 0.00 0.00 3.53
131 132 3.849563 TTGTATATGCCCACACCCTAC 57.150 47.619 0.00 0.00 0.00 3.18
132 133 2.051692 TGTATATGCCCACACCCTACC 58.948 52.381 0.00 0.00 0.00 3.18
133 134 1.001633 GTATATGCCCACACCCTACCG 59.998 57.143 0.00 0.00 0.00 4.02
134 135 2.052047 ATATGCCCACACCCTACCGC 62.052 60.000 0.00 0.00 0.00 5.68
137 138 4.096003 CCCACACCCTACCGCCAG 62.096 72.222 0.00 0.00 0.00 4.85
138 139 3.000819 CCACACCCTACCGCCAGA 61.001 66.667 0.00 0.00 0.00 3.86
139 140 2.579201 CACACCCTACCGCCAGAG 59.421 66.667 0.00 0.00 0.00 3.35
140 141 1.982395 CACACCCTACCGCCAGAGA 60.982 63.158 0.00 0.00 0.00 3.10
141 142 1.982938 ACACCCTACCGCCAGAGAC 60.983 63.158 0.00 0.00 0.00 3.36
142 143 1.682684 CACCCTACCGCCAGAGACT 60.683 63.158 0.00 0.00 0.00 3.24
143 144 1.380112 ACCCTACCGCCAGAGACTC 60.380 63.158 0.00 0.00 0.00 3.36
144 145 2.128507 CCCTACCGCCAGAGACTCC 61.129 68.421 0.00 0.00 0.00 3.85
145 146 2.482333 CCTACCGCCAGAGACTCCG 61.482 68.421 0.00 0.00 0.00 4.63
146 147 2.439701 TACCGCCAGAGACTCCGG 60.440 66.667 14.76 14.76 45.80 5.14
149 150 4.504916 CGCCAGAGACTCCGGCAG 62.505 72.222 25.78 16.02 46.60 4.85
150 151 3.386237 GCCAGAGACTCCGGCAGT 61.386 66.667 22.51 0.47 45.52 4.40
151 152 2.052690 GCCAGAGACTCCGGCAGTA 61.053 63.158 22.51 0.00 45.52 2.74
152 153 2.010582 GCCAGAGACTCCGGCAGTAG 62.011 65.000 22.51 0.00 45.52 2.57
153 154 1.388065 CCAGAGACTCCGGCAGTAGG 61.388 65.000 0.00 0.00 34.41 3.18
154 155 0.681564 CAGAGACTCCGGCAGTAGGT 60.682 60.000 0.00 0.00 34.41 3.08
155 156 0.039911 AGAGACTCCGGCAGTAGGTT 59.960 55.000 0.00 0.00 34.41 3.50
156 157 0.456628 GAGACTCCGGCAGTAGGTTC 59.543 60.000 0.00 0.00 34.41 3.62
157 158 0.251653 AGACTCCGGCAGTAGGTTCA 60.252 55.000 0.00 0.00 34.41 3.18
158 159 0.173708 GACTCCGGCAGTAGGTTCAG 59.826 60.000 0.00 0.00 34.41 3.02
159 160 0.251653 ACTCCGGCAGTAGGTTCAGA 60.252 55.000 0.00 0.00 31.37 3.27
160 161 0.173708 CTCCGGCAGTAGGTTCAGAC 59.826 60.000 0.00 0.00 0.00 3.51
161 162 0.541063 TCCGGCAGTAGGTTCAGACA 60.541 55.000 0.00 0.00 0.00 3.41
162 163 0.537188 CCGGCAGTAGGTTCAGACAT 59.463 55.000 0.00 0.00 0.00 3.06
163 164 1.471676 CCGGCAGTAGGTTCAGACATC 60.472 57.143 0.00 0.00 0.00 3.06
164 165 1.471676 CGGCAGTAGGTTCAGACATCC 60.472 57.143 0.00 0.00 0.00 3.51
165 166 1.834263 GGCAGTAGGTTCAGACATCCT 59.166 52.381 0.00 0.00 35.60 3.24
166 167 3.031736 GGCAGTAGGTTCAGACATCCTA 58.968 50.000 0.00 0.00 33.34 2.94
169 170 3.712091 GTAGGTTCAGACATCCTACCG 57.288 52.381 8.81 0.00 44.43 4.02
170 171 0.824759 AGGTTCAGACATCCTACCGC 59.175 55.000 0.00 0.00 34.09 5.68
171 172 0.179081 GGTTCAGACATCCTACCGCC 60.179 60.000 0.00 0.00 0.00 6.13
172 173 0.527817 GTTCAGACATCCTACCGCCG 60.528 60.000 0.00 0.00 0.00 6.46
173 174 1.672854 TTCAGACATCCTACCGCCGG 61.673 60.000 0.00 0.00 0.00 6.13
174 175 2.838225 AGACATCCTACCGCCGGG 60.838 66.667 8.57 0.00 40.11 5.73
188 189 4.514577 CGGGTGGAGCAGCGGTAG 62.515 72.222 0.00 0.00 32.08 3.18
189 190 4.162690 GGGTGGAGCAGCGGTAGG 62.163 72.222 0.00 0.00 32.08 3.18
190 191 4.162690 GGTGGAGCAGCGGTAGGG 62.163 72.222 0.00 0.00 0.00 3.53
191 192 3.391382 GTGGAGCAGCGGTAGGGT 61.391 66.667 0.00 0.00 0.00 4.34
192 193 3.390521 TGGAGCAGCGGTAGGGTG 61.391 66.667 0.00 0.00 46.88 4.61
193 194 3.391382 GGAGCAGCGGTAGGGTGT 61.391 66.667 0.00 0.00 45.88 4.16
194 195 2.125512 GAGCAGCGGTAGGGTGTG 60.126 66.667 0.00 0.00 45.88 3.82
195 196 2.603473 AGCAGCGGTAGGGTGTGA 60.603 61.111 0.00 0.00 45.88 3.58
196 197 2.434359 GCAGCGGTAGGGTGTGAC 60.434 66.667 0.00 0.00 45.88 3.67
197 198 2.126071 CAGCGGTAGGGTGTGACG 60.126 66.667 0.00 0.00 39.31 4.35
198 199 3.379445 AGCGGTAGGGTGTGACGG 61.379 66.667 0.00 0.00 0.00 4.79
199 200 3.376078 GCGGTAGGGTGTGACGGA 61.376 66.667 0.00 0.00 0.00 4.69
200 201 2.882876 CGGTAGGGTGTGACGGAG 59.117 66.667 0.00 0.00 0.00 4.63
201 202 2.707849 CGGTAGGGTGTGACGGAGG 61.708 68.421 0.00 0.00 0.00 4.30
202 203 2.356780 GGTAGGGTGTGACGGAGGG 61.357 68.421 0.00 0.00 0.00 4.30
203 204 2.038329 TAGGGTGTGACGGAGGGG 59.962 66.667 0.00 0.00 0.00 4.79
204 205 3.612115 TAGGGTGTGACGGAGGGGG 62.612 68.421 0.00 0.00 0.00 5.40
207 208 4.699522 GTGTGACGGAGGGGGCAC 62.700 72.222 0.00 0.00 0.00 5.01
224 225 3.700961 CGGAGGCCGTTATCGTTG 58.299 61.111 0.00 0.00 42.73 4.10
225 226 2.522638 CGGAGGCCGTTATCGTTGC 61.523 63.158 0.00 0.00 42.73 4.17
226 227 1.153429 GGAGGCCGTTATCGTTGCT 60.153 57.895 0.00 0.00 35.01 3.91
227 228 1.429148 GGAGGCCGTTATCGTTGCTG 61.429 60.000 0.00 0.00 35.01 4.41
228 229 0.459585 GAGGCCGTTATCGTTGCTGA 60.460 55.000 0.00 0.00 35.01 4.26
229 230 0.178068 AGGCCGTTATCGTTGCTGAT 59.822 50.000 0.00 0.00 35.01 2.90
230 231 0.304705 GGCCGTTATCGTTGCTGATG 59.695 55.000 0.00 0.00 35.01 3.07
231 232 1.006832 GCCGTTATCGTTGCTGATGT 58.993 50.000 0.00 0.00 35.01 3.06
232 233 1.267532 GCCGTTATCGTTGCTGATGTG 60.268 52.381 0.00 0.00 35.01 3.21
233 234 1.327460 CCGTTATCGTTGCTGATGTGG 59.673 52.381 0.00 0.00 35.01 4.17
234 235 2.267426 CGTTATCGTTGCTGATGTGGA 58.733 47.619 0.00 0.00 0.00 4.02
235 236 2.029244 CGTTATCGTTGCTGATGTGGAC 59.971 50.000 0.00 0.00 0.00 4.02
236 237 3.000041 GTTATCGTTGCTGATGTGGACA 59.000 45.455 0.00 0.00 0.00 4.02
237 238 2.183478 ATCGTTGCTGATGTGGACAA 57.817 45.000 0.00 0.00 0.00 3.18
238 239 1.511850 TCGTTGCTGATGTGGACAAG 58.488 50.000 0.00 0.00 0.00 3.16
239 240 1.202639 TCGTTGCTGATGTGGACAAGT 60.203 47.619 0.00 0.00 0.00 3.16
240 241 1.603802 CGTTGCTGATGTGGACAAGTT 59.396 47.619 0.00 0.00 0.00 2.66
241 242 2.033299 CGTTGCTGATGTGGACAAGTTT 59.967 45.455 0.00 0.00 0.00 2.66
242 243 3.374745 GTTGCTGATGTGGACAAGTTTG 58.625 45.455 0.00 0.00 0.00 2.93
243 244 1.337703 TGCTGATGTGGACAAGTTTGC 59.662 47.619 0.00 0.00 0.00 3.68
244 245 1.610522 GCTGATGTGGACAAGTTTGCT 59.389 47.619 0.00 0.00 0.00 3.91
245 246 2.813754 GCTGATGTGGACAAGTTTGCTA 59.186 45.455 0.00 0.00 0.00 3.49
246 247 3.365364 GCTGATGTGGACAAGTTTGCTAC 60.365 47.826 0.00 0.00 0.00 3.58
247 248 3.146066 TGATGTGGACAAGTTTGCTACC 58.854 45.455 0.00 0.00 0.00 3.18
248 249 1.588674 TGTGGACAAGTTTGCTACCG 58.411 50.000 0.00 0.00 0.00 4.02
249 250 0.237498 GTGGACAAGTTTGCTACCGC 59.763 55.000 0.00 0.00 0.00 5.68
250 251 0.887387 TGGACAAGTTTGCTACCGCC 60.887 55.000 0.00 0.00 34.43 6.13
251 252 1.495951 GACAAGTTTGCTACCGCCG 59.504 57.895 0.00 0.00 34.43 6.46
252 253 2.175811 CAAGTTTGCTACCGCCGC 59.824 61.111 0.00 0.00 34.43 6.53
253 254 2.281208 AAGTTTGCTACCGCCGCA 60.281 55.556 0.00 0.00 35.22 5.69
254 255 2.325082 AAGTTTGCTACCGCCGCAG 61.325 57.895 0.00 0.00 38.80 5.18
268 269 4.208686 GCAGGTCTCGGCGGTAGG 62.209 72.222 7.21 0.00 0.00 3.18
269 270 4.208686 CAGGTCTCGGCGGTAGGC 62.209 72.222 7.21 0.00 42.51 3.93
270 271 4.444081 AGGTCTCGGCGGTAGGCT 62.444 66.667 7.21 0.00 42.94 4.58
271 272 2.517875 GGTCTCGGCGGTAGGCTA 60.518 66.667 7.21 0.00 42.94 3.93
272 273 1.902432 GGTCTCGGCGGTAGGCTAT 60.902 63.158 7.21 0.00 42.94 2.97
273 274 0.607489 GGTCTCGGCGGTAGGCTATA 60.607 60.000 7.21 0.00 42.94 1.31
274 275 1.461559 GTCTCGGCGGTAGGCTATAT 58.538 55.000 7.21 0.00 42.94 0.86
275 276 1.132643 GTCTCGGCGGTAGGCTATATG 59.867 57.143 7.21 0.00 42.94 1.78
276 277 1.003928 TCTCGGCGGTAGGCTATATGA 59.996 52.381 7.21 0.00 42.94 2.15
277 278 2.025155 CTCGGCGGTAGGCTATATGAT 58.975 52.381 7.21 0.00 42.94 2.45
278 279 2.022195 TCGGCGGTAGGCTATATGATC 58.978 52.381 7.21 0.00 42.94 2.92
279 280 1.067212 CGGCGGTAGGCTATATGATCC 59.933 57.143 0.00 0.00 42.94 3.36
280 281 2.389715 GGCGGTAGGCTATATGATCCT 58.610 52.381 0.00 0.00 42.94 3.24
281 282 3.563223 GGCGGTAGGCTATATGATCCTA 58.437 50.000 0.00 0.00 42.94 2.94
285 286 4.571372 GTAGGCTATATGATCCTACCGC 57.429 50.000 14.23 0.00 43.98 5.68
286 287 2.389715 AGGCTATATGATCCTACCGCC 58.610 52.381 9.86 9.86 36.58 6.13
287 288 2.108168 GGCTATATGATCCTACCGCCA 58.892 52.381 11.90 0.00 36.37 5.69
288 289 2.101582 GGCTATATGATCCTACCGCCAG 59.898 54.545 11.90 0.00 36.37 4.85
289 290 2.101582 GCTATATGATCCTACCGCCAGG 59.898 54.545 0.00 0.00 45.13 4.45
290 291 0.905357 ATATGATCCTACCGCCAGGC 59.095 55.000 0.00 0.00 42.76 4.85
291 292 1.192146 TATGATCCTACCGCCAGGCC 61.192 60.000 5.63 0.00 42.76 5.19
292 293 3.942439 GATCCTACCGCCAGGCCC 61.942 72.222 5.63 0.00 42.76 5.80
336 337 9.586435 AAATCAGATCCCAAAATATTTTCGAAC 57.414 29.630 10.53 8.17 0.00 3.95
337 338 6.781138 TCAGATCCCAAAATATTTTCGAACG 58.219 36.000 10.53 0.00 0.00 3.95
338 339 6.596106 TCAGATCCCAAAATATTTTCGAACGA 59.404 34.615 10.53 7.46 0.00 3.85
339 340 6.907212 CAGATCCCAAAATATTTTCGAACGAG 59.093 38.462 10.53 0.00 0.00 4.18
340 341 5.554822 TCCCAAAATATTTTCGAACGAGG 57.445 39.130 10.53 7.24 0.00 4.63
341 342 4.396790 TCCCAAAATATTTTCGAACGAGGG 59.603 41.667 17.99 17.99 0.00 4.30
342 343 4.157105 CCCAAAATATTTTCGAACGAGGGT 59.843 41.667 10.53 0.00 0.00 4.34
343 344 5.336134 CCCAAAATATTTTCGAACGAGGGTT 60.336 40.000 10.53 0.00 39.63 4.11
344 345 6.127952 CCCAAAATATTTTCGAACGAGGGTTA 60.128 38.462 10.53 0.00 36.24 2.85
345 346 7.306953 CCAAAATATTTTCGAACGAGGGTTAA 58.693 34.615 10.53 0.00 36.24 2.01
346 347 7.483691 CCAAAATATTTTCGAACGAGGGTTAAG 59.516 37.037 10.53 0.00 36.24 1.85
347 348 7.910441 AAATATTTTCGAACGAGGGTTAAGA 57.090 32.000 0.00 0.00 36.24 2.10
348 349 8.502105 AAATATTTTCGAACGAGGGTTAAGAT 57.498 30.769 0.00 0.00 36.24 2.40
349 350 7.710766 ATATTTTCGAACGAGGGTTAAGATC 57.289 36.000 0.00 0.00 36.24 2.75
350 351 3.515330 TTCGAACGAGGGTTAAGATCC 57.485 47.619 0.00 0.00 36.24 3.36
351 352 2.731572 TCGAACGAGGGTTAAGATCCT 58.268 47.619 0.00 0.00 36.24 3.24
352 353 2.426024 TCGAACGAGGGTTAAGATCCTG 59.574 50.000 0.00 0.00 36.24 3.86
353 354 2.426024 CGAACGAGGGTTAAGATCCTGA 59.574 50.000 0.00 0.00 36.24 3.86
354 355 3.068307 CGAACGAGGGTTAAGATCCTGAT 59.932 47.826 0.00 0.00 36.24 2.90
355 356 4.441634 CGAACGAGGGTTAAGATCCTGATT 60.442 45.833 0.00 0.00 36.24 2.57
356 357 5.429130 GAACGAGGGTTAAGATCCTGATTT 58.571 41.667 0.00 0.00 36.24 2.17
357 358 5.437191 ACGAGGGTTAAGATCCTGATTTT 57.563 39.130 0.00 0.00 32.74 1.82
358 359 5.186198 ACGAGGGTTAAGATCCTGATTTTG 58.814 41.667 0.00 0.00 32.74 2.44
359 360 5.186198 CGAGGGTTAAGATCCTGATTTTGT 58.814 41.667 0.00 0.00 32.74 2.83
360 361 5.648092 CGAGGGTTAAGATCCTGATTTTGTT 59.352 40.000 0.00 0.00 32.74 2.83
361 362 6.151144 CGAGGGTTAAGATCCTGATTTTGTTT 59.849 38.462 0.00 0.00 32.74 2.83
362 363 7.232118 AGGGTTAAGATCCTGATTTTGTTTG 57.768 36.000 0.00 0.00 31.11 2.93
363 364 7.010160 AGGGTTAAGATCCTGATTTTGTTTGA 58.990 34.615 0.00 0.00 31.11 2.69
364 365 7.508977 AGGGTTAAGATCCTGATTTTGTTTGAA 59.491 33.333 0.00 0.00 31.11 2.69
365 366 8.147704 GGGTTAAGATCCTGATTTTGTTTGAAA 58.852 33.333 0.00 0.00 0.00 2.69
366 367 9.541143 GGTTAAGATCCTGATTTTGTTTGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
369 370 8.667076 AAGATCCTGATTTTGTTTGAAAAAGG 57.333 30.769 0.00 0.00 32.81 3.11
370 371 7.219322 AGATCCTGATTTTGTTTGAAAAAGGG 58.781 34.615 0.00 0.00 32.81 3.95
371 372 6.306643 TCCTGATTTTGTTTGAAAAAGGGT 57.693 33.333 0.00 0.00 32.81 4.34
372 373 6.345298 TCCTGATTTTGTTTGAAAAAGGGTC 58.655 36.000 0.00 0.00 32.81 4.46
373 374 6.070538 TCCTGATTTTGTTTGAAAAAGGGTCA 60.071 34.615 0.00 0.00 32.81 4.02
374 375 6.597280 CCTGATTTTGTTTGAAAAAGGGTCAA 59.403 34.615 0.00 0.00 32.81 3.18
375 376 7.120432 CCTGATTTTGTTTGAAAAAGGGTCAAA 59.880 33.333 0.00 0.00 41.50 2.69
376 377 8.396272 TGATTTTGTTTGAAAAAGGGTCAAAA 57.604 26.923 1.42 4.93 44.35 2.44
377 378 8.293157 TGATTTTGTTTGAAAAAGGGTCAAAAC 58.707 29.630 1.42 0.00 44.35 2.43
378 379 7.568199 TTTTGTTTGAAAAAGGGTCAAAACA 57.432 28.000 1.42 0.00 44.35 2.83
379 380 6.546972 TTGTTTGAAAAAGGGTCAAAACAC 57.453 33.333 1.42 0.00 44.35 3.32
380 381 4.686554 TGTTTGAAAAAGGGTCAAAACACG 59.313 37.500 1.42 0.00 44.35 4.49
381 382 4.785511 TTGAAAAAGGGTCAAAACACGA 57.214 36.364 0.00 0.00 32.13 4.35
432 433 2.325393 CTTATCCGCCCAGACCCACC 62.325 65.000 0.00 0.00 0.00 4.61
469 470 4.496927 CCGCACCCGTACCCGTAC 62.497 72.222 0.00 0.00 0.00 3.67
470 471 3.746889 CGCACCCGTACCCGTACA 61.747 66.667 5.88 0.00 35.87 2.90
471 472 2.182537 GCACCCGTACCCGTACAG 59.817 66.667 5.88 0.00 35.87 2.74
472 473 2.182537 CACCCGTACCCGTACAGC 59.817 66.667 5.88 0.00 35.87 4.40
473 474 3.443045 ACCCGTACCCGTACAGCG 61.443 66.667 5.88 0.00 35.87 5.18
565 566 4.179599 CCCCTCCCCTCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
566 567 4.179599 CCCTCCCCTCCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
567 568 3.039526 CCTCCCCTCCCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
568 569 2.612251 CTCCCCTCCCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
569 570 3.036959 TCCCCTCCCCTCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
570 571 3.039526 CCCCTCCCCTCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
571 572 2.612251 CCCTCCCCTCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
572 573 2.612251 CCTCCCCTCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
573 574 2.018086 CCTCCCCTCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
574 575 1.598856 CCTCCCCTCTCCTCCTCCTT 61.599 65.000 0.00 0.00 0.00 3.36
575 576 0.105709 CTCCCCTCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
576 577 1.456705 CCCCTCTCCTCCTCCTTCG 60.457 68.421 0.00 0.00 0.00 3.79
577 578 1.615814 CCCTCTCCTCCTCCTTCGA 59.384 63.158 0.00 0.00 0.00 3.71
578 579 0.753848 CCCTCTCCTCCTCCTTCGAC 60.754 65.000 0.00 0.00 0.00 4.20
579 580 0.753848 CCTCTCCTCCTCCTTCGACC 60.754 65.000 0.00 0.00 0.00 4.79
580 581 1.077644 TCTCCTCCTCCTTCGACCG 60.078 63.158 0.00 0.00 0.00 4.79
581 582 2.754658 TCCTCCTCCTTCGACCGC 60.755 66.667 0.00 0.00 0.00 5.68
582 583 4.194720 CCTCCTCCTTCGACCGCG 62.195 72.222 0.00 0.00 39.35 6.46
583 584 3.132139 CTCCTCCTTCGACCGCGA 61.132 66.667 8.23 0.00 46.33 5.87
618 949 1.809567 GCTGTCAAAACCCAGCCCAG 61.810 60.000 0.24 0.00 46.55 4.45
661 992 0.903942 GCATCCAAATCCCAAGCCAA 59.096 50.000 0.00 0.00 0.00 4.52
673 1004 0.381801 CAAGCCAACACACACCTCAC 59.618 55.000 0.00 0.00 0.00 3.51
674 1005 0.751643 AAGCCAACACACACCTCACC 60.752 55.000 0.00 0.00 0.00 4.02
675 1006 2.193536 GCCAACACACACCTCACCC 61.194 63.158 0.00 0.00 0.00 4.61
676 1007 1.531748 CCAACACACACCTCACCCT 59.468 57.895 0.00 0.00 0.00 4.34
677 1008 0.535102 CCAACACACACCTCACCCTC 60.535 60.000 0.00 0.00 0.00 4.30
678 1009 0.535102 CAACACACACCTCACCCTCC 60.535 60.000 0.00 0.00 0.00 4.30
679 1010 0.694444 AACACACACCTCACCCTCCT 60.694 55.000 0.00 0.00 0.00 3.69
680 1011 1.122019 ACACACACCTCACCCTCCTC 61.122 60.000 0.00 0.00 0.00 3.71
681 1012 1.536662 ACACACCTCACCCTCCTCC 60.537 63.158 0.00 0.00 0.00 4.30
682 1013 1.229336 CACACCTCACCCTCCTCCT 60.229 63.158 0.00 0.00 0.00 3.69
683 1014 1.079438 ACACCTCACCCTCCTCCTC 59.921 63.158 0.00 0.00 0.00 3.71
684 1015 1.687493 CACCTCACCCTCCTCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
685 1016 1.864559 ACCTCACCCTCCTCCTCCT 60.865 63.158 0.00 0.00 0.00 3.69
686 1017 1.075600 CCTCACCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
687 1018 1.075600 CTCACCCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
688 1019 1.547755 TCACCCTCCTCCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
728 1059 1.682684 CTACACGCCACCTCCTCCT 60.683 63.158 0.00 0.00 0.00 3.69
729 1060 1.668101 CTACACGCCACCTCCTCCTC 61.668 65.000 0.00 0.00 0.00 3.71
730 1061 3.775654 CACGCCACCTCCTCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
929 1273 1.299468 GTCGAGGCTAGCACATCGG 60.299 63.158 26.01 13.90 35.91 4.18
949 1293 1.093159 GAGGAGCTCTCGGTTTCGTA 58.907 55.000 14.64 0.00 37.69 3.43
1058 1402 1.153449 CGATTTGCCGCCCTCTGTA 60.153 57.895 0.00 0.00 0.00 2.74
1109 1453 0.854218 TTGGGGGAACTGCTTTGGTA 59.146 50.000 0.00 0.00 0.00 3.25
1121 1465 4.709886 ACTGCTTTGGTAAAAAGTTGGTCT 59.290 37.500 0.30 0.00 0.00 3.85
1145 1489 6.698380 TGGTTTCTCTCTCATGGTAAGTTAC 58.302 40.000 4.32 4.32 0.00 2.50
1146 1490 6.497259 TGGTTTCTCTCTCATGGTAAGTTACT 59.503 38.462 12.65 0.00 0.00 2.24
1147 1491 7.672660 TGGTTTCTCTCTCATGGTAAGTTACTA 59.327 37.037 12.65 7.27 0.00 1.82
1148 1492 8.529476 GGTTTCTCTCTCATGGTAAGTTACTAA 58.471 37.037 12.65 2.62 0.00 2.24
1149 1493 9.575783 GTTTCTCTCTCATGGTAAGTTACTAAG 57.424 37.037 12.65 4.25 0.00 2.18
1151 1495 8.880991 TCTCTCTCATGGTAAGTTACTAAGTT 57.119 34.615 12.65 0.00 0.00 2.66
1152 1496 9.970553 TCTCTCTCATGGTAAGTTACTAAGTTA 57.029 33.333 12.65 0.00 0.00 2.24
1154 1498 9.186837 TCTCTCATGGTAAGTTACTAAGTTAGG 57.813 37.037 14.36 0.00 0.00 2.69
1155 1499 7.779073 TCTCATGGTAAGTTACTAAGTTAGGC 58.221 38.462 14.36 4.42 0.00 3.93
1156 1500 7.618512 TCTCATGGTAAGTTACTAAGTTAGGCT 59.381 37.037 14.36 6.49 0.00 4.58
1157 1501 8.142485 TCATGGTAAGTTACTAAGTTAGGCTT 57.858 34.615 14.36 15.22 41.05 4.35
1158 1502 8.255905 TCATGGTAAGTTACTAAGTTAGGCTTC 58.744 37.037 14.36 8.82 38.57 3.86
1159 1503 6.624423 TGGTAAGTTACTAAGTTAGGCTTCG 58.376 40.000 14.36 0.00 38.57 3.79
1160 1504 5.518128 GGTAAGTTACTAAGTTAGGCTTCGC 59.482 44.000 14.36 10.51 38.57 4.70
1170 1514 4.785453 GGCTTCGCCCCCAGACTG 62.785 72.222 0.00 0.00 44.06 3.51
1171 1515 3.706373 GCTTCGCCCCCAGACTGA 61.706 66.667 3.32 0.00 0.00 3.41
1172 1516 2.581354 CTTCGCCCCCAGACTGAG 59.419 66.667 3.32 0.00 0.00 3.35
1173 1517 3.003173 TTCGCCCCCAGACTGAGG 61.003 66.667 3.32 0.00 0.00 3.86
1198 1542 4.113354 CTGAGGCGGTAGTTGATTAAGTC 58.887 47.826 0.00 0.00 0.00 3.01
1241 1585 2.663119 GCTTGTGCAGAAAAATTAGCGG 59.337 45.455 0.00 0.00 39.41 5.52
1243 1587 3.829886 TGTGCAGAAAAATTAGCGGAG 57.170 42.857 0.00 0.00 0.00 4.63
1263 1607 4.486090 GAGCTTCATGTAACTTGAGTCGA 58.514 43.478 0.00 0.00 0.00 4.20
1264 1608 5.078411 AGCTTCATGTAACTTGAGTCGAT 57.922 39.130 0.00 0.00 0.00 3.59
1265 1609 4.867047 AGCTTCATGTAACTTGAGTCGATG 59.133 41.667 0.00 0.00 0.00 3.84
1266 1610 4.493220 GCTTCATGTAACTTGAGTCGATGC 60.493 45.833 0.00 0.00 0.00 3.91
1267 1611 3.521560 TCATGTAACTTGAGTCGATGCC 58.478 45.455 0.00 0.00 0.00 4.40
1268 1612 1.990799 TGTAACTTGAGTCGATGCCG 58.009 50.000 0.00 0.00 37.07 5.69
1269 1613 1.542472 TGTAACTTGAGTCGATGCCGA 59.458 47.619 0.00 0.00 43.35 5.54
1284 1628 7.956420 TCGATGCCGATTAGTAAACATAATT 57.044 32.000 0.00 0.00 40.30 1.40
1285 1629 7.792925 TCGATGCCGATTAGTAAACATAATTG 58.207 34.615 0.00 0.00 40.30 2.32
1286 1630 7.439955 TCGATGCCGATTAGTAAACATAATTGT 59.560 33.333 0.00 0.00 40.30 2.71
1367 1712 4.816925 AGTAAATCGCCCTCTATTCAAAGC 59.183 41.667 0.00 0.00 0.00 3.51
1374 1719 3.242870 GCCCTCTATTCAAAGCAATCACG 60.243 47.826 0.00 0.00 0.00 4.35
1500 1847 3.066380 TGGAGTGACGTGAATTGTGATG 58.934 45.455 0.00 0.00 0.00 3.07
1505 1852 2.480037 TGACGTGAATTGTGATGCACTC 59.520 45.455 0.00 0.00 39.34 3.51
1542 1893 0.924090 GACGCGTGATCCAGTCAATC 59.076 55.000 20.70 0.00 38.90 2.67
1626 1977 1.745232 TGAATCCGTATGGTGGCAAC 58.255 50.000 0.00 0.00 36.30 4.17
1629 1980 2.038387 ATCCGTATGGTGGCAACTTC 57.962 50.000 3.27 0.00 36.30 3.01
1674 2025 5.874810 TGATGCGCTAATGATAAATAGGACC 59.125 40.000 9.73 0.00 0.00 4.46
1812 2169 2.481441 ACCATGTATCTTGGCCTCTGA 58.519 47.619 3.32 0.00 37.81 3.27
1817 2174 4.574674 TGTATCTTGGCCTCTGATGTTT 57.425 40.909 3.32 0.00 0.00 2.83
1832 2189 6.763355 TCTGATGTTTCTGTTCTAAAGCTCT 58.237 36.000 0.00 0.00 0.00 4.09
2044 2410 8.671921 TCTCATTTGATCAATTCTTCTTGCTAC 58.328 33.333 9.40 0.00 0.00 3.58
2190 2556 0.965866 TAGAGCTCCGGGTCAGTGTG 60.966 60.000 10.93 0.00 41.89 3.82
2197 2563 3.408634 CTCCGGGTCAGTGTGTTTTTAT 58.591 45.455 0.00 0.00 0.00 1.40
2201 2567 3.813166 CGGGTCAGTGTGTTTTTATCTGT 59.187 43.478 0.00 0.00 0.00 3.41
2208 2574 5.008019 CAGTGTGTTTTTATCTGTCTGCTGT 59.992 40.000 0.00 0.00 0.00 4.40
2249 2615 2.576191 TCTGGGAAATGGTTGGTCTAGG 59.424 50.000 0.00 0.00 0.00 3.02
2571 3065 0.246635 GTCCTGAGCCGCAAGAACTA 59.753 55.000 0.00 0.00 43.02 2.24
3020 3564 8.479313 TCATTACTTCATGACTATGTGTGAAC 57.521 34.615 0.00 0.00 35.73 3.18
3021 3565 8.314021 TCATTACTTCATGACTATGTGTGAACT 58.686 33.333 0.00 0.00 35.73 3.01
3311 3869 0.958822 AAAATGGTGAGTTGCGGGTC 59.041 50.000 0.00 0.00 0.00 4.46
3692 4282 8.661352 AATTCACCCAACTAATGTTTCTTTTG 57.339 30.769 0.00 0.00 33.52 2.44
3693 4283 5.596845 TCACCCAACTAATGTTTCTTTTGC 58.403 37.500 0.00 0.00 33.52 3.68
3694 4284 5.362430 TCACCCAACTAATGTTTCTTTTGCT 59.638 36.000 0.00 0.00 33.52 3.91
3798 4388 1.817209 CTTACCGGGCCTCTCTGAC 59.183 63.158 6.32 0.00 0.00 3.51
4052 4642 1.227556 GTATTGGGAGCACGCCGAT 60.228 57.895 0.00 0.00 0.00 4.18
4388 4978 0.250295 TGGTTCCAGAACTTGCTCCG 60.250 55.000 10.19 0.00 40.94 4.63
4397 4987 2.029918 AGAACTTGCTCCGAAATTTGGC 60.030 45.455 0.00 0.00 0.00 4.52
4419 5009 5.578727 GGCAAGATATATGAACTCCTTAGCG 59.421 44.000 0.00 0.00 0.00 4.26
4595 5185 3.243359 AGCCAAACCCTCTCATTTTCA 57.757 42.857 0.00 0.00 0.00 2.69
4598 5188 3.573967 GCCAAACCCTCTCATTTTCAGAA 59.426 43.478 0.00 0.00 0.00 3.02
4802 5392 4.662468 TGAGATAAGATCTGCTGTGGAC 57.338 45.455 0.00 0.00 40.38 4.02
5088 5678 6.896021 TTCCTCCTCTAGGTAATTATGACG 57.104 41.667 0.00 0.00 46.62 4.35
5149 5739 7.236432 AGCTATATGGGTATGTTGATCTTCACT 59.764 37.037 0.00 0.00 0.00 3.41
5592 6184 2.029649 GGAAATTGCCCATGATCATCCG 60.030 50.000 4.86 0.00 0.00 4.18
5704 6319 2.756829 TCTGGCATTTCGTGACGTTTA 58.243 42.857 4.40 0.00 39.40 2.01
5765 6381 4.560128 CAGTATGCATATTGCCGTAGACT 58.440 43.478 15.30 1.22 44.23 3.24
5917 6543 5.457799 CGGTGGTTAGTATGTTTCTGTATCG 59.542 44.000 0.00 0.00 0.00 2.92
5994 6620 4.832266 TGTGTTTTATGGTCTTTGGCATCT 59.168 37.500 0.00 0.00 0.00 2.90
5995 6621 5.163513 GTGTTTTATGGTCTTTGGCATCTG 58.836 41.667 0.00 0.00 0.00 2.90
6055 6681 1.420430 TTCGTTTCCTGAGGTCCAGT 58.580 50.000 0.00 0.00 41.33 4.00
6073 6699 2.100749 CAGTGTGAGGTATGTCGGCATA 59.899 50.000 5.41 5.41 36.58 3.14
6074 6700 2.965831 AGTGTGAGGTATGTCGGCATAT 59.034 45.455 13.70 0.00 39.49 1.78
6085 6711 2.756400 GGCATATGATCGCCCCCA 59.244 61.111 6.97 0.00 42.82 4.96
6135 6763 2.935481 CACCAGGGGAAGGCAGGA 60.935 66.667 0.00 0.00 0.00 3.86
6151 6779 2.686915 GCAGGAAATGTCTCTTCCATGG 59.313 50.000 4.97 4.97 44.19 3.66
6152 6780 3.623203 GCAGGAAATGTCTCTTCCATGGA 60.623 47.826 11.44 11.44 44.19 3.41
6157 6785 1.274703 TGTCTCTTCCATGGAGGGCC 61.275 60.000 22.65 11.64 38.24 5.80
6160 6788 2.037620 CTCTTCCATGGAGGGCCTCG 62.038 65.000 26.54 13.32 38.24 4.63
6168 6796 2.046217 GAGGGCCTCGTTTGGGTC 60.046 66.667 19.53 0.00 0.00 4.46
6176 6804 1.403780 CCTCGTTTGGGTCGTAGGAAG 60.404 57.143 0.00 0.00 32.06 3.46
6179 6807 2.102925 TCGTTTGGGTCGTAGGAAGTTT 59.897 45.455 0.00 0.00 0.00 2.66
6234 6862 3.638160 TGAAAGCCATTTGGATCATAGGC 59.362 43.478 0.00 0.00 42.31 3.93
6244 6872 1.202313 GGATCATAGGCTCGCGATACC 60.202 57.143 10.36 15.18 0.00 2.73
6248 6876 2.061773 CATAGGCTCGCGATACCAAAG 58.938 52.381 25.05 12.96 0.00 2.77
6278 6906 3.491342 GAATCCTTTCCTATGCTTCCCC 58.509 50.000 0.00 0.00 0.00 4.81
6279 6907 1.979809 TCCTTTCCTATGCTTCCCCA 58.020 50.000 0.00 0.00 0.00 4.96
6314 6942 5.620206 TCTTCTTAACATGAGCTCAAACCA 58.380 37.500 22.50 3.82 0.00 3.67
6324 6952 6.663093 ACATGAGCTCAAACCATATTTTACCA 59.337 34.615 22.50 0.00 0.00 3.25
6350 6980 5.376854 TTTAGAAGTCCAATGCTCTTTGC 57.623 39.130 0.00 0.00 43.25 3.68
6391 7021 9.923143 TCTCTCGTCAATACTTGAAATTTTCTA 57.077 29.630 10.33 2.24 42.15 2.10
6403 7033 9.003658 ACTTGAAATTTTCTATGTTCGTCATCT 57.996 29.630 10.33 0.00 37.91 2.90
6404 7034 9.270576 CTTGAAATTTTCTATGTTCGTCATCTG 57.729 33.333 10.33 0.00 37.91 2.90
6405 7035 8.322906 TGAAATTTTCTATGTTCGTCATCTGT 57.677 30.769 10.33 0.00 37.91 3.41
6406 7036 8.229811 TGAAATTTTCTATGTTCGTCATCTGTG 58.770 33.333 10.33 0.00 37.91 3.66
6407 7037 7.672983 AATTTTCTATGTTCGTCATCTGTGT 57.327 32.000 0.00 0.00 37.91 3.72
6411 7041 6.693315 TCTATGTTCGTCATCTGTGTATCA 57.307 37.500 0.00 0.00 37.91 2.15
6412 7042 7.277174 TCTATGTTCGTCATCTGTGTATCAT 57.723 36.000 0.00 0.00 37.91 2.45
6413 7043 7.363431 TCTATGTTCGTCATCTGTGTATCATC 58.637 38.462 0.00 0.00 37.91 2.92
6414 7044 4.682787 TGTTCGTCATCTGTGTATCATCC 58.317 43.478 0.00 0.00 0.00 3.51
6415 7045 3.626028 TCGTCATCTGTGTATCATCCG 57.374 47.619 0.00 0.00 0.00 4.18
6416 7046 3.211045 TCGTCATCTGTGTATCATCCGA 58.789 45.455 0.00 0.00 0.00 4.55
6417 7047 3.630312 TCGTCATCTGTGTATCATCCGAA 59.370 43.478 0.00 0.00 0.00 4.30
6418 7048 3.977579 CGTCATCTGTGTATCATCCGAAG 59.022 47.826 0.00 0.00 0.00 3.79
6446 7093 4.188247 TCAGTTCTAGTGGGATTTCACG 57.812 45.455 0.00 0.00 42.10 4.35
6481 7128 5.191124 TCCCACTCCTACTTTTCCCTATTTC 59.809 44.000 0.00 0.00 0.00 2.17
6482 7129 5.191921 CCCACTCCTACTTTTCCCTATTTCT 59.808 44.000 0.00 0.00 0.00 2.52
6483 7130 6.386050 CCCACTCCTACTTTTCCCTATTTCTA 59.614 42.308 0.00 0.00 0.00 2.10
6484 7131 7.273712 CCACTCCTACTTTTCCCTATTTCTAC 58.726 42.308 0.00 0.00 0.00 2.59
6485 7132 6.979238 CACTCCTACTTTTCCCTATTTCTACG 59.021 42.308 0.00 0.00 0.00 3.51
6486 7133 6.666980 ACTCCTACTTTTCCCTATTTCTACGT 59.333 38.462 0.00 0.00 0.00 3.57
6487 7134 7.179872 ACTCCTACTTTTCCCTATTTCTACGTT 59.820 37.037 0.00 0.00 0.00 3.99
6488 7135 7.910584 TCCTACTTTTCCCTATTTCTACGTTT 58.089 34.615 0.00 0.00 0.00 3.60
6489 7136 8.377799 TCCTACTTTTCCCTATTTCTACGTTTT 58.622 33.333 0.00 0.00 0.00 2.43
6490 7137 8.663025 CCTACTTTTCCCTATTTCTACGTTTTC 58.337 37.037 0.00 0.00 0.00 2.29
6491 7138 9.211485 CTACTTTTCCCTATTTCTACGTTTTCA 57.789 33.333 0.00 0.00 0.00 2.69
6492 7139 8.454570 ACTTTTCCCTATTTCTACGTTTTCAA 57.545 30.769 0.00 0.00 0.00 2.69
6493 7140 8.905850 ACTTTTCCCTATTTCTACGTTTTCAAA 58.094 29.630 0.00 0.00 0.00 2.69
6494 7141 9.908152 CTTTTCCCTATTTCTACGTTTTCAAAT 57.092 29.630 0.00 0.00 0.00 2.32
6497 7144 9.902196 TTCCCTATTTCTACGTTTTCAAATTTC 57.098 29.630 0.00 0.00 0.00 2.17
6498 7145 9.292195 TCCCTATTTCTACGTTTTCAAATTTCT 57.708 29.630 0.00 0.00 0.00 2.52
6499 7146 9.908152 CCCTATTTCTACGTTTTCAAATTTCTT 57.092 29.630 0.00 0.00 0.00 2.52
6505 7152 9.458374 TTCTACGTTTTCAAATTTCTTCAATCC 57.542 29.630 0.00 0.00 0.00 3.01
6506 7153 8.625651 TCTACGTTTTCAAATTTCTTCAATCCA 58.374 29.630 0.00 0.00 0.00 3.41
6507 7154 9.243637 CTACGTTTTCAAATTTCTTCAATCCAA 57.756 29.630 0.00 0.00 0.00 3.53
6508 7155 8.661352 ACGTTTTCAAATTTCTTCAATCCAAT 57.339 26.923 0.00 0.00 0.00 3.16
6509 7156 9.108284 ACGTTTTCAAATTTCTTCAATCCAATT 57.892 25.926 0.00 0.00 0.00 2.32
6514 7161 9.927668 TTCAAATTTCTTCAATCCAATTAGTCC 57.072 29.630 0.00 0.00 0.00 3.85
6515 7162 9.312904 TCAAATTTCTTCAATCCAATTAGTCCT 57.687 29.630 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.264955 TCATCCCCTACACTCTCCCC 59.735 60.000 0.00 0.00 0.00 4.81
1 2 1.218196 TCTCATCCCCTACACTCTCCC 59.782 57.143 0.00 0.00 0.00 4.30
2 3 2.175931 TCTCTCATCCCCTACACTCTCC 59.824 54.545 0.00 0.00 0.00 3.71
3 4 3.486383 CTCTCTCATCCCCTACACTCTC 58.514 54.545 0.00 0.00 0.00 3.20
4 5 2.176798 CCTCTCTCATCCCCTACACTCT 59.823 54.545 0.00 0.00 0.00 3.24
5 6 2.593026 CCTCTCTCATCCCCTACACTC 58.407 57.143 0.00 0.00 0.00 3.51
6 7 1.219213 CCCTCTCTCATCCCCTACACT 59.781 57.143 0.00 0.00 0.00 3.55
7 8 1.710816 CCCTCTCTCATCCCCTACAC 58.289 60.000 0.00 0.00 0.00 2.90
8 9 0.105453 GCCCTCTCTCATCCCCTACA 60.105 60.000 0.00 0.00 0.00 2.74
9 10 1.182385 CGCCCTCTCTCATCCCCTAC 61.182 65.000 0.00 0.00 0.00 3.18
10 11 1.153989 CGCCCTCTCTCATCCCCTA 59.846 63.158 0.00 0.00 0.00 3.53
11 12 2.123077 CGCCCTCTCTCATCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
12 13 2.123251 TCGCCCTCTCTCATCCCC 60.123 66.667 0.00 0.00 0.00 4.81
13 14 1.045911 AACTCGCCCTCTCTCATCCC 61.046 60.000 0.00 0.00 0.00 3.85
14 15 0.103937 CAACTCGCCCTCTCTCATCC 59.896 60.000 0.00 0.00 0.00 3.51
15 16 0.103937 CCAACTCGCCCTCTCTCATC 59.896 60.000 0.00 0.00 0.00 2.92
16 17 0.324738 TCCAACTCGCCCTCTCTCAT 60.325 55.000 0.00 0.00 0.00 2.90
17 18 0.967887 CTCCAACTCGCCCTCTCTCA 60.968 60.000 0.00 0.00 0.00 3.27
18 19 1.813192 CTCCAACTCGCCCTCTCTC 59.187 63.158 0.00 0.00 0.00 3.20
19 20 2.355193 GCTCCAACTCGCCCTCTCT 61.355 63.158 0.00 0.00 0.00 3.10
20 21 2.172483 TTGCTCCAACTCGCCCTCTC 62.172 60.000 0.00 0.00 0.00 3.20
21 22 2.217038 TTGCTCCAACTCGCCCTCT 61.217 57.895 0.00 0.00 0.00 3.69
22 23 2.035442 GTTGCTCCAACTCGCCCTC 61.035 63.158 1.09 0.00 40.73 4.30
23 24 2.032681 GTTGCTCCAACTCGCCCT 59.967 61.111 1.09 0.00 40.73 5.19
30 31 3.996480 AGAACAGAGTAGTTGCTCCAAC 58.004 45.455 0.00 0.00 43.83 3.77
31 32 4.632153 GAAGAACAGAGTAGTTGCTCCAA 58.368 43.478 0.00 0.00 36.20 3.53
32 33 3.305403 CGAAGAACAGAGTAGTTGCTCCA 60.305 47.826 0.00 0.00 36.20 3.86
33 34 3.246619 CGAAGAACAGAGTAGTTGCTCC 58.753 50.000 0.00 0.00 36.20 4.70
34 35 3.670991 CACGAAGAACAGAGTAGTTGCTC 59.329 47.826 0.00 0.00 35.82 4.26
35 36 3.553096 CCACGAAGAACAGAGTAGTTGCT 60.553 47.826 0.00 0.00 0.00 3.91
36 37 2.731976 CCACGAAGAACAGAGTAGTTGC 59.268 50.000 0.00 0.00 0.00 4.17
37 38 3.978687 ACCACGAAGAACAGAGTAGTTG 58.021 45.455 0.00 0.00 0.00 3.16
38 39 4.217983 CCTACCACGAAGAACAGAGTAGTT 59.782 45.833 0.00 0.00 0.00 2.24
39 40 3.757493 CCTACCACGAAGAACAGAGTAGT 59.243 47.826 0.00 0.00 0.00 2.73
40 41 3.128938 CCCTACCACGAAGAACAGAGTAG 59.871 52.174 0.00 0.00 0.00 2.57
41 42 3.087031 CCCTACCACGAAGAACAGAGTA 58.913 50.000 0.00 0.00 0.00 2.59
42 43 1.893801 CCCTACCACGAAGAACAGAGT 59.106 52.381 0.00 0.00 0.00 3.24
43 44 1.204941 CCCCTACCACGAAGAACAGAG 59.795 57.143 0.00 0.00 0.00 3.35
44 45 1.263356 CCCCTACCACGAAGAACAGA 58.737 55.000 0.00 0.00 0.00 3.41
45 46 0.249398 CCCCCTACCACGAAGAACAG 59.751 60.000 0.00 0.00 0.00 3.16
46 47 1.833787 GCCCCCTACCACGAAGAACA 61.834 60.000 0.00 0.00 0.00 3.18
47 48 1.078637 GCCCCCTACCACGAAGAAC 60.079 63.158 0.00 0.00 0.00 3.01
48 49 2.652095 CGCCCCCTACCACGAAGAA 61.652 63.158 0.00 0.00 0.00 2.52
49 50 3.072468 CGCCCCCTACCACGAAGA 61.072 66.667 0.00 0.00 0.00 2.87
50 51 4.157120 CCGCCCCCTACCACGAAG 62.157 72.222 0.00 0.00 0.00 3.79
100 101 1.595929 ATATACAAACCGCGGGCCG 60.596 57.895 31.76 24.35 0.00 6.13
101 102 1.946267 CATATACAAACCGCGGGCC 59.054 57.895 31.76 0.00 0.00 5.80
102 103 1.281656 GCATATACAAACCGCGGGC 59.718 57.895 31.76 15.99 0.00 6.13
103 104 1.512156 GGGCATATACAAACCGCGGG 61.512 60.000 31.76 14.78 0.00 6.13
104 105 0.816018 TGGGCATATACAAACCGCGG 60.816 55.000 26.86 26.86 0.00 6.46
105 106 0.306533 GTGGGCATATACAAACCGCG 59.693 55.000 0.00 0.00 0.00 6.46
106 107 1.064952 GTGTGGGCATATACAAACCGC 59.935 52.381 0.00 0.00 0.00 5.68
107 108 1.673920 GGTGTGGGCATATACAAACCG 59.326 52.381 0.00 0.00 35.43 4.44
108 109 2.028876 GGGTGTGGGCATATACAAACC 58.971 52.381 5.43 5.43 42.99 3.27
109 110 3.012934 AGGGTGTGGGCATATACAAAC 57.987 47.619 0.00 0.00 0.00 2.93
110 111 3.117813 GGTAGGGTGTGGGCATATACAAA 60.118 47.826 0.00 0.00 0.00 2.83
111 112 2.440253 GGTAGGGTGTGGGCATATACAA 59.560 50.000 0.00 0.00 0.00 2.41
112 113 2.051692 GGTAGGGTGTGGGCATATACA 58.948 52.381 0.00 0.00 0.00 2.29
113 114 1.001633 CGGTAGGGTGTGGGCATATAC 59.998 57.143 0.00 0.00 0.00 1.47
114 115 1.344065 CGGTAGGGTGTGGGCATATA 58.656 55.000 0.00 0.00 0.00 0.86
115 116 2.052047 GCGGTAGGGTGTGGGCATAT 62.052 60.000 0.00 0.00 0.00 1.78
116 117 2.737881 GCGGTAGGGTGTGGGCATA 61.738 63.158 0.00 0.00 0.00 3.14
117 118 4.109675 GCGGTAGGGTGTGGGCAT 62.110 66.667 0.00 0.00 0.00 4.40
120 121 4.096003 CTGGCGGTAGGGTGTGGG 62.096 72.222 0.00 0.00 0.00 4.61
121 122 3.000819 TCTGGCGGTAGGGTGTGG 61.001 66.667 0.00 0.00 0.00 4.17
122 123 1.982395 TCTCTGGCGGTAGGGTGTG 60.982 63.158 0.00 0.00 0.00 3.82
123 124 1.982938 GTCTCTGGCGGTAGGGTGT 60.983 63.158 0.00 0.00 0.00 4.16
124 125 1.668101 GAGTCTCTGGCGGTAGGGTG 61.668 65.000 0.00 0.00 0.00 4.61
125 126 1.380112 GAGTCTCTGGCGGTAGGGT 60.380 63.158 0.00 0.00 0.00 4.34
126 127 2.128507 GGAGTCTCTGGCGGTAGGG 61.129 68.421 0.00 0.00 0.00 3.53
127 128 2.482333 CGGAGTCTCTGGCGGTAGG 61.482 68.421 0.11 0.00 0.00 3.18
128 129 2.482333 CCGGAGTCTCTGGCGGTAG 61.482 68.421 14.98 0.00 35.89 3.18
129 130 2.439701 CCGGAGTCTCTGGCGGTA 60.440 66.667 14.98 0.00 35.89 4.02
134 135 1.388065 CCTACTGCCGGAGTCTCTGG 61.388 65.000 21.91 21.91 45.82 3.86
135 136 0.681564 ACCTACTGCCGGAGTCTCTG 60.682 60.000 5.05 1.20 35.96 3.35
136 137 0.039911 AACCTACTGCCGGAGTCTCT 59.960 55.000 5.05 0.00 35.96 3.10
137 138 0.456628 GAACCTACTGCCGGAGTCTC 59.543 60.000 5.05 0.00 35.96 3.36
138 139 0.251653 TGAACCTACTGCCGGAGTCT 60.252 55.000 5.05 0.00 35.96 3.24
139 140 0.173708 CTGAACCTACTGCCGGAGTC 59.826 60.000 5.05 0.00 35.96 3.36
140 141 0.251653 TCTGAACCTACTGCCGGAGT 60.252 55.000 5.05 8.84 38.88 3.85
141 142 0.173708 GTCTGAACCTACTGCCGGAG 59.826 60.000 5.05 1.84 0.00 4.63
142 143 0.541063 TGTCTGAACCTACTGCCGGA 60.541 55.000 5.05 0.00 0.00 5.14
143 144 0.537188 ATGTCTGAACCTACTGCCGG 59.463 55.000 0.00 0.00 0.00 6.13
144 145 1.471676 GGATGTCTGAACCTACTGCCG 60.472 57.143 0.00 0.00 0.00 5.69
145 146 1.834263 AGGATGTCTGAACCTACTGCC 59.166 52.381 0.00 0.00 31.78 4.85
150 151 2.029623 GCGGTAGGATGTCTGAACCTA 58.970 52.381 0.00 0.00 35.52 3.08
151 152 0.824759 GCGGTAGGATGTCTGAACCT 59.175 55.000 0.00 0.00 37.76 3.50
152 153 0.179081 GGCGGTAGGATGTCTGAACC 60.179 60.000 0.00 0.00 0.00 3.62
153 154 0.527817 CGGCGGTAGGATGTCTGAAC 60.528 60.000 0.00 0.00 0.00 3.18
154 155 1.672854 CCGGCGGTAGGATGTCTGAA 61.673 60.000 19.97 0.00 0.00 3.02
155 156 2.125326 CCGGCGGTAGGATGTCTGA 61.125 63.158 19.97 0.00 0.00 3.27
156 157 2.417516 CCGGCGGTAGGATGTCTG 59.582 66.667 19.97 0.00 0.00 3.51
157 158 2.838225 CCCGGCGGTAGGATGTCT 60.838 66.667 26.32 0.00 0.00 3.41
158 159 3.152400 ACCCGGCGGTAGGATGTC 61.152 66.667 26.32 0.00 42.18 3.06
159 160 3.467226 CACCCGGCGGTAGGATGT 61.467 66.667 26.32 11.55 42.04 3.06
160 161 4.235762 CCACCCGGCGGTAGGATG 62.236 72.222 26.32 13.95 42.04 3.51
161 162 4.468769 TCCACCCGGCGGTAGGAT 62.469 66.667 26.60 5.41 42.04 3.24
171 172 4.514577 CTACCGCTGCTCCACCCG 62.515 72.222 0.00 0.00 0.00 5.28
172 173 4.162690 CCTACCGCTGCTCCACCC 62.163 72.222 0.00 0.00 0.00 4.61
173 174 4.162690 CCCTACCGCTGCTCCACC 62.163 72.222 0.00 0.00 0.00 4.61
174 175 3.391382 ACCCTACCGCTGCTCCAC 61.391 66.667 0.00 0.00 0.00 4.02
175 176 3.390521 CACCCTACCGCTGCTCCA 61.391 66.667 0.00 0.00 0.00 3.86
176 177 3.391382 ACACCCTACCGCTGCTCC 61.391 66.667 0.00 0.00 0.00 4.70
177 178 2.125512 CACACCCTACCGCTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
178 179 2.603473 TCACACCCTACCGCTGCT 60.603 61.111 0.00 0.00 0.00 4.24
179 180 2.434359 GTCACACCCTACCGCTGC 60.434 66.667 0.00 0.00 0.00 5.25
180 181 2.126071 CGTCACACCCTACCGCTG 60.126 66.667 0.00 0.00 0.00 5.18
181 182 3.379445 CCGTCACACCCTACCGCT 61.379 66.667 0.00 0.00 0.00 5.52
182 183 3.352338 CTCCGTCACACCCTACCGC 62.352 68.421 0.00 0.00 0.00 5.68
183 184 2.707849 CCTCCGTCACACCCTACCG 61.708 68.421 0.00 0.00 0.00 4.02
184 185 2.356780 CCCTCCGTCACACCCTACC 61.357 68.421 0.00 0.00 0.00 3.18
185 186 2.356780 CCCCTCCGTCACACCCTAC 61.357 68.421 0.00 0.00 0.00 3.18
186 187 2.038329 CCCCTCCGTCACACCCTA 59.962 66.667 0.00 0.00 0.00 3.53
190 191 4.699522 GTGCCCCCTCCGTCACAC 62.700 72.222 0.00 0.00 0.00 3.82
208 209 1.153429 AGCAACGATAACGGCCTCC 60.153 57.895 0.00 0.00 44.46 4.30
209 210 0.459585 TCAGCAACGATAACGGCCTC 60.460 55.000 0.00 0.00 44.46 4.70
210 211 0.178068 ATCAGCAACGATAACGGCCT 59.822 50.000 0.00 0.00 44.46 5.19
211 212 0.304705 CATCAGCAACGATAACGGCC 59.695 55.000 0.00 0.00 44.46 6.13
212 213 1.006832 ACATCAGCAACGATAACGGC 58.993 50.000 0.00 0.00 44.46 5.68
213 214 1.327460 CCACATCAGCAACGATAACGG 59.673 52.381 0.00 0.00 44.46 4.44
214 215 2.029244 GTCCACATCAGCAACGATAACG 59.971 50.000 0.00 0.00 45.75 3.18
215 216 3.000041 TGTCCACATCAGCAACGATAAC 59.000 45.455 0.00 0.00 0.00 1.89
216 217 3.326836 TGTCCACATCAGCAACGATAA 57.673 42.857 0.00 0.00 0.00 1.75
217 218 3.261580 CTTGTCCACATCAGCAACGATA 58.738 45.455 0.00 0.00 0.00 2.92
218 219 2.079158 CTTGTCCACATCAGCAACGAT 58.921 47.619 0.00 0.00 0.00 3.73
219 220 1.202639 ACTTGTCCACATCAGCAACGA 60.203 47.619 0.00 0.00 0.00 3.85
220 221 1.229428 ACTTGTCCACATCAGCAACG 58.771 50.000 0.00 0.00 0.00 4.10
221 222 3.374745 CAAACTTGTCCACATCAGCAAC 58.625 45.455 0.00 0.00 0.00 4.17
222 223 2.223782 GCAAACTTGTCCACATCAGCAA 60.224 45.455 0.00 0.00 0.00 3.91
223 224 1.337703 GCAAACTTGTCCACATCAGCA 59.662 47.619 0.00 0.00 0.00 4.41
224 225 1.610522 AGCAAACTTGTCCACATCAGC 59.389 47.619 0.00 0.00 0.00 4.26
225 226 3.189287 GGTAGCAAACTTGTCCACATCAG 59.811 47.826 0.00 0.00 0.00 2.90
226 227 3.146066 GGTAGCAAACTTGTCCACATCA 58.854 45.455 0.00 0.00 0.00 3.07
227 228 2.159627 CGGTAGCAAACTTGTCCACATC 59.840 50.000 0.00 0.00 0.00 3.06
228 229 2.151202 CGGTAGCAAACTTGTCCACAT 58.849 47.619 0.00 0.00 0.00 3.21
229 230 1.588674 CGGTAGCAAACTTGTCCACA 58.411 50.000 0.00 0.00 0.00 4.17
230 231 0.237498 GCGGTAGCAAACTTGTCCAC 59.763 55.000 0.00 0.00 44.35 4.02
231 232 2.624169 GCGGTAGCAAACTTGTCCA 58.376 52.632 0.00 0.00 44.35 4.02
242 243 4.874977 GAGACCTGCGGCGGTAGC 62.875 72.222 9.78 7.76 37.42 3.58
243 244 4.554363 CGAGACCTGCGGCGGTAG 62.554 72.222 9.78 2.23 37.42 3.18
251 252 4.208686 CCTACCGCCGAGACCTGC 62.209 72.222 0.00 0.00 0.00 4.85
252 253 4.208686 GCCTACCGCCGAGACCTG 62.209 72.222 0.00 0.00 0.00 4.00
253 254 2.354755 ATAGCCTACCGCCGAGACCT 62.355 60.000 0.00 0.00 38.78 3.85
254 255 0.607489 TATAGCCTACCGCCGAGACC 60.607 60.000 0.00 0.00 38.78 3.85
255 256 1.132643 CATATAGCCTACCGCCGAGAC 59.867 57.143 0.00 0.00 38.78 3.36
256 257 1.003928 TCATATAGCCTACCGCCGAGA 59.996 52.381 0.00 0.00 38.78 4.04
257 258 1.460504 TCATATAGCCTACCGCCGAG 58.539 55.000 0.00 0.00 38.78 4.63
258 259 2.022195 GATCATATAGCCTACCGCCGA 58.978 52.381 0.00 0.00 38.78 5.54
259 260 1.067212 GGATCATATAGCCTACCGCCG 59.933 57.143 0.00 0.00 38.78 6.46
260 261 2.389715 AGGATCATATAGCCTACCGCC 58.610 52.381 0.00 0.00 44.19 6.13
265 266 3.053170 TGGCGGTAGGATCATATAGCCTA 60.053 47.826 25.57 15.32 44.19 3.93
267 268 2.101582 CTGGCGGTAGGATCATATAGCC 59.898 54.545 21.53 21.53 43.26 3.93
268 269 2.101582 CCTGGCGGTAGGATCATATAGC 59.898 54.545 8.05 8.05 40.42 2.97
269 270 2.101582 GCCTGGCGGTAGGATCATATAG 59.898 54.545 1.35 0.00 40.42 1.31
270 271 2.108168 GCCTGGCGGTAGGATCATATA 58.892 52.381 1.35 0.00 40.42 0.86
271 272 0.905357 GCCTGGCGGTAGGATCATAT 59.095 55.000 1.35 0.00 40.42 1.78
272 273 1.192146 GGCCTGGCGGTAGGATCATA 61.192 60.000 13.40 0.00 40.42 2.15
273 274 2.520536 GGCCTGGCGGTAGGATCAT 61.521 63.158 13.40 0.00 40.42 2.45
274 275 3.161450 GGCCTGGCGGTAGGATCA 61.161 66.667 13.40 0.00 40.42 2.92
275 276 3.942439 GGGCCTGGCGGTAGGATC 61.942 72.222 13.40 0.00 40.42 3.36
291 292 3.577334 TTTTGCCTACCGCCAGGGG 62.577 63.158 0.00 0.00 43.47 4.79
292 293 1.605165 TTTTTGCCTACCGCCAGGG 60.605 57.895 3.06 0.00 43.47 4.45
293 294 4.089105 TTTTTGCCTACCGCCAGG 57.911 55.556 0.00 0.00 45.13 4.45
310 311 9.586435 GTTCGAAAATATTTTGGGATCTGATTT 57.414 29.630 17.98 0.00 0.00 2.17
311 312 7.915397 CGTTCGAAAATATTTTGGGATCTGATT 59.085 33.333 17.98 0.00 0.00 2.57
312 313 7.282224 TCGTTCGAAAATATTTTGGGATCTGAT 59.718 33.333 17.98 0.00 0.00 2.90
313 314 6.596106 TCGTTCGAAAATATTTTGGGATCTGA 59.404 34.615 17.98 8.44 0.00 3.27
314 315 6.781138 TCGTTCGAAAATATTTTGGGATCTG 58.219 36.000 17.98 6.48 0.00 2.90
315 316 6.038271 CCTCGTTCGAAAATATTTTGGGATCT 59.962 38.462 17.98 0.00 0.00 2.75
316 317 6.199393 CCTCGTTCGAAAATATTTTGGGATC 58.801 40.000 17.98 11.96 0.00 3.36
317 318 5.067283 CCCTCGTTCGAAAATATTTTGGGAT 59.933 40.000 17.98 0.00 29.58 3.85
318 319 4.396790 CCCTCGTTCGAAAATATTTTGGGA 59.603 41.667 17.98 8.93 29.58 4.37
319 320 4.157105 ACCCTCGTTCGAAAATATTTTGGG 59.843 41.667 17.98 19.61 32.62 4.12
320 321 5.305139 ACCCTCGTTCGAAAATATTTTGG 57.695 39.130 17.98 16.21 0.00 3.28
321 322 8.231837 TCTTAACCCTCGTTCGAAAATATTTTG 58.768 33.333 17.98 10.28 33.17 2.44
322 323 8.326680 TCTTAACCCTCGTTCGAAAATATTTT 57.673 30.769 13.24 13.24 33.17 1.82
323 324 7.910441 TCTTAACCCTCGTTCGAAAATATTT 57.090 32.000 0.00 0.00 33.17 1.40
324 325 7.226128 GGATCTTAACCCTCGTTCGAAAATATT 59.774 37.037 0.00 0.00 33.17 1.28
325 326 6.704937 GGATCTTAACCCTCGTTCGAAAATAT 59.295 38.462 0.00 0.00 33.17 1.28
326 327 6.044682 GGATCTTAACCCTCGTTCGAAAATA 58.955 40.000 0.00 0.00 33.17 1.40
327 328 4.874396 GGATCTTAACCCTCGTTCGAAAAT 59.126 41.667 0.00 0.00 33.17 1.82
328 329 4.020839 AGGATCTTAACCCTCGTTCGAAAA 60.021 41.667 0.00 0.00 33.17 2.29
329 330 3.512724 AGGATCTTAACCCTCGTTCGAAA 59.487 43.478 0.00 0.00 33.17 3.46
330 331 3.094572 AGGATCTTAACCCTCGTTCGAA 58.905 45.455 0.00 0.00 33.17 3.71
331 332 2.426024 CAGGATCTTAACCCTCGTTCGA 59.574 50.000 0.00 0.00 33.17 3.71
332 333 2.426024 TCAGGATCTTAACCCTCGTTCG 59.574 50.000 0.00 0.00 33.17 3.95
333 334 4.674281 ATCAGGATCTTAACCCTCGTTC 57.326 45.455 0.00 0.00 33.17 3.95
334 335 5.437191 AAATCAGGATCTTAACCCTCGTT 57.563 39.130 0.00 0.00 35.90 3.85
335 336 5.186198 CAAAATCAGGATCTTAACCCTCGT 58.814 41.667 0.00 0.00 0.00 4.18
336 337 5.186198 ACAAAATCAGGATCTTAACCCTCG 58.814 41.667 0.00 0.00 0.00 4.63
337 338 7.176690 TCAAACAAAATCAGGATCTTAACCCTC 59.823 37.037 0.00 0.00 0.00 4.30
338 339 7.010160 TCAAACAAAATCAGGATCTTAACCCT 58.990 34.615 0.00 0.00 0.00 4.34
339 340 7.227049 TCAAACAAAATCAGGATCTTAACCC 57.773 36.000 0.00 0.00 0.00 4.11
340 341 9.541143 TTTTCAAACAAAATCAGGATCTTAACC 57.459 29.630 0.00 0.00 0.00 2.85
343 344 9.762933 CCTTTTTCAAACAAAATCAGGATCTTA 57.237 29.630 0.00 0.00 0.00 2.10
344 345 7.716560 CCCTTTTTCAAACAAAATCAGGATCTT 59.283 33.333 0.00 0.00 0.00 2.40
345 346 7.147497 ACCCTTTTTCAAACAAAATCAGGATCT 60.147 33.333 0.00 0.00 0.00 2.75
346 347 6.992123 ACCCTTTTTCAAACAAAATCAGGATC 59.008 34.615 0.00 0.00 0.00 3.36
347 348 6.899089 ACCCTTTTTCAAACAAAATCAGGAT 58.101 32.000 0.00 0.00 0.00 3.24
348 349 6.070538 TGACCCTTTTTCAAACAAAATCAGGA 60.071 34.615 0.00 0.00 0.00 3.86
349 350 6.112058 TGACCCTTTTTCAAACAAAATCAGG 58.888 36.000 0.00 0.00 0.00 3.86
350 351 7.608308 TTGACCCTTTTTCAAACAAAATCAG 57.392 32.000 0.00 0.00 29.89 2.90
351 352 7.986085 TTTGACCCTTTTTCAAACAAAATCA 57.014 28.000 0.00 0.00 37.91 2.57
352 353 8.293157 TGTTTTGACCCTTTTTCAAACAAAATC 58.707 29.630 0.00 0.00 41.55 2.17
353 354 8.079203 GTGTTTTGACCCTTTTTCAAACAAAAT 58.921 29.630 0.00 0.00 41.55 1.82
354 355 7.418408 GTGTTTTGACCCTTTTTCAAACAAAA 58.582 30.769 0.00 0.00 41.55 2.44
355 356 6.292919 CGTGTTTTGACCCTTTTTCAAACAAA 60.293 34.615 0.00 0.00 41.55 2.83
356 357 5.177696 CGTGTTTTGACCCTTTTTCAAACAA 59.822 36.000 0.00 0.00 41.55 2.83
357 358 4.686554 CGTGTTTTGACCCTTTTTCAAACA 59.313 37.500 0.00 0.00 41.55 2.83
358 359 4.924462 TCGTGTTTTGACCCTTTTTCAAAC 59.076 37.500 0.00 0.00 41.55 2.93
359 360 5.135508 TCGTGTTTTGACCCTTTTTCAAA 57.864 34.783 0.00 0.00 40.42 2.69
360 361 4.785511 TCGTGTTTTGACCCTTTTTCAA 57.214 36.364 0.00 0.00 0.00 2.69
361 362 4.785511 TTCGTGTTTTGACCCTTTTTCA 57.214 36.364 0.00 0.00 0.00 2.69
362 363 5.445407 GCTTTTCGTGTTTTGACCCTTTTTC 60.445 40.000 0.00 0.00 0.00 2.29
363 364 4.390603 GCTTTTCGTGTTTTGACCCTTTTT 59.609 37.500 0.00 0.00 0.00 1.94
364 365 3.930229 GCTTTTCGTGTTTTGACCCTTTT 59.070 39.130 0.00 0.00 0.00 2.27
365 366 3.056465 TGCTTTTCGTGTTTTGACCCTTT 60.056 39.130 0.00 0.00 0.00 3.11
366 367 2.494073 TGCTTTTCGTGTTTTGACCCTT 59.506 40.909 0.00 0.00 0.00 3.95
367 368 2.096248 TGCTTTTCGTGTTTTGACCCT 58.904 42.857 0.00 0.00 0.00 4.34
368 369 2.190161 GTGCTTTTCGTGTTTTGACCC 58.810 47.619 0.00 0.00 0.00 4.46
369 370 1.843753 CGTGCTTTTCGTGTTTTGACC 59.156 47.619 0.00 0.00 0.00 4.02
370 371 1.843753 CCGTGCTTTTCGTGTTTTGAC 59.156 47.619 0.00 0.00 0.00 3.18
371 372 1.202200 CCCGTGCTTTTCGTGTTTTGA 60.202 47.619 0.00 0.00 0.00 2.69
372 373 1.196200 CCCGTGCTTTTCGTGTTTTG 58.804 50.000 0.00 0.00 0.00 2.44
373 374 0.526739 GCCCGTGCTTTTCGTGTTTT 60.527 50.000 0.00 0.00 33.53 2.43
374 375 1.065109 GCCCGTGCTTTTCGTGTTT 59.935 52.632 0.00 0.00 33.53 2.83
375 376 2.115911 TGCCCGTGCTTTTCGTGTT 61.116 52.632 0.00 0.00 38.71 3.32
376 377 2.515057 TGCCCGTGCTTTTCGTGT 60.515 55.556 0.00 0.00 38.71 4.49
377 378 2.051345 GTGCCCGTGCTTTTCGTG 60.051 61.111 0.00 0.00 38.71 4.35
378 379 3.284449 GGTGCCCGTGCTTTTCGT 61.284 61.111 0.00 0.00 38.71 3.85
379 380 4.038080 GGGTGCCCGTGCTTTTCG 62.038 66.667 0.00 0.00 38.71 3.46
380 381 2.022240 TTTGGGTGCCCGTGCTTTTC 62.022 55.000 2.44 0.00 39.42 2.29
381 382 1.406860 ATTTGGGTGCCCGTGCTTTT 61.407 50.000 2.44 0.00 39.42 2.27
414 415 2.372074 GGTGGGTCTGGGCGGATAA 61.372 63.158 0.00 0.00 0.00 1.75
550 551 3.039526 AGGAGAGGGGAGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
559 560 0.753848 GTCGAAGGAGGAGGAGAGGG 60.754 65.000 0.00 0.00 0.00 4.30
563 564 2.776913 GCGGTCGAAGGAGGAGGAG 61.777 68.421 0.00 0.00 0.00 3.69
564 565 2.754658 GCGGTCGAAGGAGGAGGA 60.755 66.667 0.00 0.00 0.00 3.71
565 566 4.194720 CGCGGTCGAAGGAGGAGG 62.195 72.222 0.00 0.00 38.10 4.30
566 567 3.132139 TCGCGGTCGAAGGAGGAG 61.132 66.667 6.13 0.00 42.44 3.69
592 593 2.127232 GTTTTGACAGCGAGCGGC 60.127 61.111 0.00 0.00 44.05 6.53
593 594 2.556287 GGTTTTGACAGCGAGCGG 59.444 61.111 0.00 0.00 0.00 5.52
594 595 2.175184 CTGGGTTTTGACAGCGAGCG 62.175 60.000 0.00 0.00 0.00 5.03
595 596 1.576421 CTGGGTTTTGACAGCGAGC 59.424 57.895 0.00 0.00 0.00 5.03
618 949 0.109504 GACTGAGTCGACTGGTCTGC 60.110 60.000 25.58 7.85 0.00 4.26
661 992 1.074471 AGGAGGGTGAGGTGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
673 1004 2.612251 GGAGGAGGAGGAGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
674 1005 2.018086 AGGGAGGAGGAGGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
675 1006 1.541672 GAGGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
676 1007 2.015726 GGAGGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
677 1008 2.018086 AGGAGGGAGGAGGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
678 1009 1.541672 GAGGAGGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
679 1010 2.015726 GGAGGAGGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
680 1011 2.018086 AGGAGGAGGGAGGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
681 1012 1.292941 TGAGGAGGAGGGAGGAGGAG 61.293 65.000 0.00 0.00 0.00 3.69
682 1013 1.230650 TGAGGAGGAGGGAGGAGGA 60.231 63.158 0.00 0.00 0.00 3.71
683 1014 1.075600 GTGAGGAGGAGGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
684 1015 1.075600 GGTGAGGAGGAGGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
685 1016 1.862138 TGGTGAGGAGGAGGGAGGA 60.862 63.158 0.00 0.00 0.00 3.71
686 1017 1.687493 GTGGTGAGGAGGAGGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
687 1018 1.079256 TGTGGTGAGGAGGAGGGAG 59.921 63.158 0.00 0.00 0.00 4.30
688 1019 1.229209 GTGTGGTGAGGAGGAGGGA 60.229 63.158 0.00 0.00 0.00 4.20
929 1273 1.139947 CGAAACCGAGAGCTCCTCC 59.860 63.158 10.93 0.00 38.71 4.30
1058 1402 1.736032 GCATAGACGGAAACTGCGACT 60.736 52.381 0.00 0.00 39.49 4.18
1092 1436 2.003937 TTTACCAAAGCAGTTCCCCC 57.996 50.000 0.00 0.00 0.00 5.40
1109 1453 5.510430 AGAGAGAAACCAGACCAACTTTTT 58.490 37.500 0.00 0.00 0.00 1.94
1121 1465 5.825593 AACTTACCATGAGAGAGAAACCA 57.174 39.130 0.00 0.00 0.00 3.67
1155 1499 2.581354 CTCAGTCTGGGGGCGAAG 59.419 66.667 0.00 0.00 0.00 3.79
1156 1500 3.003173 CCTCAGTCTGGGGGCGAA 61.003 66.667 11.40 0.00 33.20 4.70
1166 1510 2.716017 CCGCCTCAGACCCTCAGTC 61.716 68.421 0.00 0.00 46.71 3.51
1167 1511 2.151307 TACCGCCTCAGACCCTCAGT 62.151 60.000 0.00 0.00 0.00 3.41
1168 1512 1.379977 TACCGCCTCAGACCCTCAG 60.380 63.158 0.00 0.00 0.00 3.35
1169 1513 1.379977 CTACCGCCTCAGACCCTCA 60.380 63.158 0.00 0.00 0.00 3.86
1170 1514 0.971447 AACTACCGCCTCAGACCCTC 60.971 60.000 0.00 0.00 0.00 4.30
1171 1515 1.078710 AACTACCGCCTCAGACCCT 59.921 57.895 0.00 0.00 0.00 4.34
1172 1516 1.218316 CAACTACCGCCTCAGACCC 59.782 63.158 0.00 0.00 0.00 4.46
1173 1517 0.824759 ATCAACTACCGCCTCAGACC 59.175 55.000 0.00 0.00 0.00 3.85
1174 1518 2.674796 AATCAACTACCGCCTCAGAC 57.325 50.000 0.00 0.00 0.00 3.51
1175 1519 3.767673 ACTTAATCAACTACCGCCTCAGA 59.232 43.478 0.00 0.00 0.00 3.27
1181 1525 3.617263 CCACTGACTTAATCAACTACCGC 59.383 47.826 0.00 0.00 36.69 5.68
1198 1542 0.888619 TCAACTAGCCGAGTCCACTG 59.111 55.000 0.00 0.00 37.44 3.66
1241 1585 4.486090 TCGACTCAAGTTACATGAAGCTC 58.514 43.478 0.00 0.00 0.00 4.09
1243 1587 4.493220 GCATCGACTCAAGTTACATGAAGC 60.493 45.833 0.00 0.00 0.00 3.86
1250 1594 2.273370 TCGGCATCGACTCAAGTTAC 57.727 50.000 0.00 0.00 40.88 2.50
1264 1608 8.286800 GCATACAATTATGTTTACTAATCGGCA 58.713 33.333 0.00 0.00 41.05 5.69
1265 1609 7.749126 GGCATACAATTATGTTTACTAATCGGC 59.251 37.037 0.00 0.00 41.05 5.54
1266 1610 8.779303 TGGCATACAATTATGTTTACTAATCGG 58.221 33.333 0.00 0.00 41.05 4.18
1267 1611 9.811655 CTGGCATACAATTATGTTTACTAATCG 57.188 33.333 0.00 0.00 41.05 3.34
1268 1612 9.612620 GCTGGCATACAATTATGTTTACTAATC 57.387 33.333 0.00 0.00 41.05 1.75
1269 1613 8.576442 GGCTGGCATACAATTATGTTTACTAAT 58.424 33.333 0.00 0.00 41.05 1.73
1270 1614 7.777910 AGGCTGGCATACAATTATGTTTACTAA 59.222 33.333 3.38 0.00 41.05 2.24
1271 1615 7.228507 CAGGCTGGCATACAATTATGTTTACTA 59.771 37.037 6.61 0.00 41.05 1.82
1272 1616 6.039717 CAGGCTGGCATACAATTATGTTTACT 59.960 38.462 6.61 0.00 41.05 2.24
1273 1617 6.183360 ACAGGCTGGCATACAATTATGTTTAC 60.183 38.462 20.34 0.00 41.05 2.01
1274 1618 5.890985 ACAGGCTGGCATACAATTATGTTTA 59.109 36.000 20.34 0.00 41.05 2.01
1275 1619 4.711355 ACAGGCTGGCATACAATTATGTTT 59.289 37.500 20.34 0.00 41.05 2.83
1276 1620 4.280819 ACAGGCTGGCATACAATTATGTT 58.719 39.130 20.34 0.00 41.05 2.71
1277 1621 3.885297 GACAGGCTGGCATACAATTATGT 59.115 43.478 17.39 0.00 43.74 2.29
1278 1622 3.254166 GGACAGGCTGGCATACAATTATG 59.746 47.826 24.18 0.00 38.57 1.90
1279 1623 3.117550 TGGACAGGCTGGCATACAATTAT 60.118 43.478 24.18 0.00 0.00 1.28
1280 1624 2.240921 TGGACAGGCTGGCATACAATTA 59.759 45.455 24.18 0.00 0.00 1.40
1281 1625 1.005805 TGGACAGGCTGGCATACAATT 59.994 47.619 24.18 0.00 0.00 2.32
1282 1626 0.625316 TGGACAGGCTGGCATACAAT 59.375 50.000 24.18 0.00 0.00 2.71
1283 1627 0.625316 ATGGACAGGCTGGCATACAA 59.375 50.000 24.18 1.77 0.00 2.41
1284 1628 0.625316 AATGGACAGGCTGGCATACA 59.375 50.000 24.18 11.74 0.00 2.29
1285 1629 1.767759 AAATGGACAGGCTGGCATAC 58.232 50.000 24.18 5.28 0.00 2.39
1286 1630 2.101783 CAAAATGGACAGGCTGGCATA 58.898 47.619 24.18 11.12 0.00 3.14
1367 1712 1.684142 TTGCGCAAACATCGTGATTG 58.316 45.000 22.78 4.45 33.90 2.67
1374 1719 5.393962 ACTAGAGAAAATTGCGCAAACATC 58.606 37.500 28.81 22.78 0.00 3.06
1487 1834 1.131126 GGGAGTGCATCACAATTCACG 59.869 52.381 0.00 0.00 34.65 4.35
1525 1876 0.525455 TCGATTGACTGGATCACGCG 60.525 55.000 3.53 3.53 36.92 6.01
1542 1893 8.883731 AGTCACAAGAATATCCATACTTTTTCG 58.116 33.333 0.00 0.00 0.00 3.46
1601 1952 3.880490 GCCACCATACGGATTCAACATAA 59.120 43.478 0.00 0.00 35.59 1.90
1603 1954 2.297701 GCCACCATACGGATTCAACAT 58.702 47.619 0.00 0.00 35.59 2.71
1626 1977 4.445452 AAAATACTGCCATGTGCTGAAG 57.555 40.909 16.14 5.62 41.11 3.02
1629 1980 5.893687 TCAATAAAATACTGCCATGTGCTG 58.106 37.500 10.16 10.16 43.93 4.41
1674 2025 0.944386 CCCAACTGAAGTGTCCGTTG 59.056 55.000 4.58 4.58 44.30 4.10
1757 2110 4.156182 GCTTTCTAAATTTCCCGTTGTCG 58.844 43.478 0.00 0.00 0.00 4.35
1763 2116 7.312899 ACACTATTTGCTTTCTAAATTTCCCG 58.687 34.615 0.00 0.00 0.00 5.14
1764 2117 7.484959 CGACACTATTTGCTTTCTAAATTTCCC 59.515 37.037 0.00 0.00 0.00 3.97
1812 2169 7.118971 GTGATCAGAGCTTTAGAACAGAAACAT 59.881 37.037 0.00 0.00 0.00 2.71
1817 2174 4.774726 AGGTGATCAGAGCTTTAGAACAGA 59.225 41.667 0.00 0.00 0.00 3.41
2094 2460 2.224314 GTCAAGCTGCTGGTTTGTAGAC 59.776 50.000 1.35 6.63 37.41 2.59
2190 2556 6.651225 AGAGGTTACAGCAGACAGATAAAAAC 59.349 38.462 0.00 0.00 0.00 2.43
2197 2563 3.803715 GCAAAGAGGTTACAGCAGACAGA 60.804 47.826 0.00 0.00 0.00 3.41
2201 2567 3.141398 CAAGCAAAGAGGTTACAGCAGA 58.859 45.455 0.00 0.00 35.88 4.26
2208 2574 3.391296 AGACACTCCAAGCAAAGAGGTTA 59.609 43.478 2.53 0.00 35.88 2.85
2249 2615 9.443283 CAAAGAATAACATTTCTAGCTGCATAC 57.557 33.333 1.02 0.00 34.89 2.39
2562 3056 3.317993 TGGTGCCTTTTTCTAGTTCTTGC 59.682 43.478 0.00 0.00 0.00 4.01
2571 3065 4.677182 AGGAATGTATGGTGCCTTTTTCT 58.323 39.130 0.00 0.00 0.00 2.52
3020 3564 2.421952 CCAGACAGAGGGAGAGAGAGAG 60.422 59.091 0.00 0.00 0.00 3.20
3021 3565 1.563879 CCAGACAGAGGGAGAGAGAGA 59.436 57.143 0.00 0.00 0.00 3.10
3311 3869 2.232452 CCTCATATGCCTCCTTACTCCG 59.768 54.545 0.00 0.00 0.00 4.63
3692 4282 0.457443 GCCATCCCAGTTAAGCAAGC 59.543 55.000 0.00 0.00 0.00 4.01
3693 4283 1.838112 TGCCATCCCAGTTAAGCAAG 58.162 50.000 0.00 0.00 0.00 4.01
3694 4284 2.291475 TGATGCCATCCCAGTTAAGCAA 60.291 45.455 1.49 0.00 33.35 3.91
3770 4360 2.853235 GCCCGGTAAGCCTTATACAT 57.147 50.000 0.00 0.00 0.00 2.29
3798 4388 6.694411 CAGATTGACTTGTTCTGGAAACAAAG 59.306 38.462 5.03 2.92 42.06 2.77
4052 4642 2.092968 GCCCATAGAGATGTTGACACCA 60.093 50.000 0.00 0.00 0.00 4.17
4388 4978 8.854117 AGGAGTTCATATATCTTGCCAAATTTC 58.146 33.333 0.00 0.00 0.00 2.17
4397 4987 5.578727 GGCGCTAAGGAGTTCATATATCTTG 59.421 44.000 7.64 0.00 0.00 3.02
4419 5009 7.900782 ACCACATATATTAATCGTAACAGGC 57.099 36.000 0.00 0.00 0.00 4.85
4489 5079 7.504238 ACTCAAGGATAATGGACTAGACTACAG 59.496 40.741 0.00 0.00 0.00 2.74
4595 5185 0.034059 CTCGAGCCTGTTGTGGTTCT 59.966 55.000 0.00 0.00 35.55 3.01
4598 5188 2.743718 CCTCGAGCCTGTTGTGGT 59.256 61.111 6.99 0.00 0.00 4.16
4763 5353 9.674824 CTTATCTCAATTCCAAATAATCTGCAC 57.325 33.333 0.00 0.00 0.00 4.57
5088 5678 1.467920 CTCTTCCAACTGCCATTCCC 58.532 55.000 0.00 0.00 0.00 3.97
5149 5739 2.886523 CAAACATCTCCTCCAACTTGCA 59.113 45.455 0.00 0.00 0.00 4.08
5223 5813 5.662456 AGCATCATATCATCCTCTTCATCG 58.338 41.667 0.00 0.00 0.00 3.84
5704 6319 1.196808 CGCATAAAACAACTGGCGACT 59.803 47.619 0.00 0.00 46.65 4.18
5765 6381 1.001815 GTAGCAAGCAACGAAGGCAAA 60.002 47.619 0.00 0.00 0.00 3.68
5816 6432 4.998672 TCAATTCGTACAGGTACCCAAAAG 59.001 41.667 8.74 0.00 32.61 2.27
5817 6433 4.970711 TCAATTCGTACAGGTACCCAAAA 58.029 39.130 8.74 0.00 32.61 2.44
5917 6543 3.181478 CCACGAGGGAGAAAGGTATACAC 60.181 52.174 5.01 0.00 40.01 2.90
5994 6620 6.151985 TCTCTAAAAGAACAAAAAGGCACACA 59.848 34.615 0.00 0.00 0.00 3.72
5995 6621 6.560711 TCTCTAAAAGAACAAAAAGGCACAC 58.439 36.000 0.00 0.00 0.00 3.82
6055 6681 2.962421 TCATATGCCGACATACCTCACA 59.038 45.455 0.00 0.00 41.50 3.58
6073 6699 1.987807 CTCCAGTTGGGGGCGATCAT 61.988 60.000 0.00 0.00 37.22 2.45
6074 6700 2.609299 TCCAGTTGGGGGCGATCA 60.609 61.111 0.00 0.00 37.22 2.92
6085 6711 2.239400 GTTTAAAGGCAGGCTCCAGTT 58.761 47.619 0.00 0.00 0.00 3.16
6135 6763 2.357569 GCCCTCCATGGAAGAGACATTT 60.358 50.000 17.00 0.00 38.35 2.32
6151 6779 2.046217 GACCCAAACGAGGCCCTC 60.046 66.667 0.00 0.00 0.00 4.30
6152 6780 4.016706 CGACCCAAACGAGGCCCT 62.017 66.667 0.00 0.00 0.00 5.19
6157 6785 1.271656 ACTTCCTACGACCCAAACGAG 59.728 52.381 0.00 0.00 34.70 4.18
6160 6788 2.551032 CCAAACTTCCTACGACCCAAAC 59.449 50.000 0.00 0.00 0.00 2.93
6168 6796 4.575885 TCAAATCCTCCAAACTTCCTACG 58.424 43.478 0.00 0.00 0.00 3.51
6176 6804 9.725019 AATCCTTAAATTTCAAATCCTCCAAAC 57.275 29.630 0.00 0.00 0.00 2.93
6218 6846 1.808945 GCGAGCCTATGATCCAAATGG 59.191 52.381 0.00 0.00 0.00 3.16
6234 6862 4.680110 CCATAGTAACTTTGGTATCGCGAG 59.320 45.833 16.66 0.54 29.93 5.03
6236 6864 4.613944 TCCATAGTAACTTTGGTATCGCG 58.386 43.478 0.00 0.00 34.84 5.87
6273 6901 9.934784 TTAAGAAGATTCATATGAAATGGGGAA 57.065 29.630 21.50 8.57 37.61 3.97
6303 6931 9.435688 AAAAATGGTAAAATATGGTTTGAGCTC 57.564 29.630 6.82 6.82 0.00 4.09
6350 6980 2.673258 GAGAGAGGGTAAAGAGAGGGG 58.327 57.143 0.00 0.00 0.00 4.79
6391 7021 5.292765 GGATGATACACAGATGACGAACAT 58.707 41.667 0.00 0.00 42.47 2.71
6393 7023 3.731216 CGGATGATACACAGATGACGAAC 59.269 47.826 0.00 0.00 0.00 3.95
6395 7025 3.211045 TCGGATGATACACAGATGACGA 58.789 45.455 0.00 0.00 0.00 4.20
6396 7026 3.626028 TCGGATGATACACAGATGACG 57.374 47.619 0.00 0.00 0.00 4.35
6397 7027 4.202161 ACCTTCGGATGATACACAGATGAC 60.202 45.833 0.00 0.00 0.00 3.06
6398 7028 3.960755 ACCTTCGGATGATACACAGATGA 59.039 43.478 0.00 0.00 0.00 2.92
6399 7029 4.327982 ACCTTCGGATGATACACAGATG 57.672 45.455 0.00 0.00 0.00 2.90
6400 7030 6.672266 AATACCTTCGGATGATACACAGAT 57.328 37.500 0.00 0.00 0.00 2.90
6401 7031 6.479972 AAATACCTTCGGATGATACACAGA 57.520 37.500 0.00 0.00 0.00 3.41
6402 7032 6.761242 TGAAAATACCTTCGGATGATACACAG 59.239 38.462 0.00 0.00 0.00 3.66
6403 7033 6.645306 TGAAAATACCTTCGGATGATACACA 58.355 36.000 0.00 0.00 0.00 3.72
6404 7034 6.761714 ACTGAAAATACCTTCGGATGATACAC 59.238 38.462 0.00 0.00 35.58 2.90
6405 7035 6.884832 ACTGAAAATACCTTCGGATGATACA 58.115 36.000 0.00 0.00 35.58 2.29
6406 7036 7.711339 AGAACTGAAAATACCTTCGGATGATAC 59.289 37.037 0.00 0.00 35.58 2.24
6407 7037 7.792032 AGAACTGAAAATACCTTCGGATGATA 58.208 34.615 0.00 0.00 35.58 2.15
6411 7041 7.042335 CACTAGAACTGAAAATACCTTCGGAT 58.958 38.462 0.00 0.00 35.58 4.18
6412 7042 6.395629 CACTAGAACTGAAAATACCTTCGGA 58.604 40.000 0.00 0.00 35.58 4.55
6413 7043 5.581085 CCACTAGAACTGAAAATACCTTCGG 59.419 44.000 0.00 0.00 37.65 4.30
6414 7044 5.581085 CCCACTAGAACTGAAAATACCTTCG 59.419 44.000 0.00 0.00 0.00 3.79
6415 7045 6.708285 TCCCACTAGAACTGAAAATACCTTC 58.292 40.000 0.00 0.00 0.00 3.46
6416 7046 6.697641 TCCCACTAGAACTGAAAATACCTT 57.302 37.500 0.00 0.00 0.00 3.50
6417 7047 6.893020 ATCCCACTAGAACTGAAAATACCT 57.107 37.500 0.00 0.00 0.00 3.08
6418 7048 7.610305 TGAAATCCCACTAGAACTGAAAATACC 59.390 37.037 0.00 0.00 0.00 2.73
6431 7078 3.880047 TGTACCGTGAAATCCCACTAG 57.120 47.619 0.00 0.00 35.02 2.57
6432 7079 3.770388 TCATGTACCGTGAAATCCCACTA 59.230 43.478 0.00 0.00 35.02 2.74
6433 7080 2.569853 TCATGTACCGTGAAATCCCACT 59.430 45.455 0.00 0.00 35.02 4.00
6434 7081 2.676342 GTCATGTACCGTGAAATCCCAC 59.324 50.000 0.00 0.00 30.77 4.61
6435 7082 2.303311 TGTCATGTACCGTGAAATCCCA 59.697 45.455 0.00 0.00 30.77 4.37
6436 7083 2.980568 TGTCATGTACCGTGAAATCCC 58.019 47.619 0.00 0.00 30.77 3.85
6446 7093 2.119495 AGGAGTGGGATGTCATGTACC 58.881 52.381 0.00 0.00 0.00 3.34
6481 7128 8.795786 TGGATTGAAGAAATTTGAAAACGTAG 57.204 30.769 0.00 0.00 0.00 3.51
6482 7129 9.757227 ATTGGATTGAAGAAATTTGAAAACGTA 57.243 25.926 0.00 0.00 0.00 3.57
6483 7130 8.661352 ATTGGATTGAAGAAATTTGAAAACGT 57.339 26.923 0.00 0.00 0.00 3.99
6488 7135 9.927668 GGACTAATTGGATTGAAGAAATTTGAA 57.072 29.630 0.00 0.00 0.00 2.69
6489 7136 9.312904 AGGACTAATTGGATTGAAGAAATTTGA 57.687 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.