Multiple sequence alignment - TraesCS2D01G307400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G307400 chr2D 100.000 5533 0 0 1 5533 394123773 394118241 0.000000e+00 10218.0
1 TraesCS2D01G307400 chr2D 96.327 245 6 3 5292 5533 544908207 544908451 3.110000e-107 399.0
2 TraesCS2D01G307400 chr2D 94.915 177 9 0 4807 4983 315491312 315491136 1.520000e-70 278.0
3 TraesCS2D01G307400 chr2D 86.275 51 7 0 4378 4428 420309865 420309815 7.740000e-04 56.5
4 TraesCS2D01G307400 chr2B 88.090 2628 112 69 21 2526 465830531 465827983 0.000000e+00 2933.0
5 TraesCS2D01G307400 chr2B 97.132 1290 30 4 3448 4736 465827008 465825725 0.000000e+00 2170.0
6 TraesCS2D01G307400 chr2B 90.371 727 41 10 2668 3371 465827905 465827185 0.000000e+00 928.0
7 TraesCS2D01G307400 chr2B 87.302 315 11 7 4983 5297 465823494 465823209 3.190000e-87 333.0
8 TraesCS2D01G307400 chr2B 91.979 187 10 2 4801 4983 771215133 771215318 1.980000e-64 257.0
9 TraesCS2D01G307400 chr2B 97.561 82 2 0 4723 4804 465823567 465823486 2.080000e-29 141.0
10 TraesCS2D01G307400 chr2A 96.242 1304 36 6 3449 4741 532087171 532085870 0.000000e+00 2124.0
11 TraesCS2D01G307400 chr2A 91.467 1043 52 25 432 1450 532090210 532089181 0.000000e+00 1399.0
12 TraesCS2D01G307400 chr2A 89.859 710 37 9 2680 3371 532087976 532087284 0.000000e+00 880.0
13 TraesCS2D01G307400 chr2A 93.346 541 14 11 1998 2526 532088611 532088081 0.000000e+00 780.0
14 TraesCS2D01G307400 chr2A 91.304 437 13 10 1 434 532090650 532090236 1.730000e-159 573.0
15 TraesCS2D01G307400 chr2A 87.037 378 14 17 1530 1876 532089136 532088763 1.440000e-105 394.0
16 TraesCS2D01G307400 chr2A 90.032 311 14 4 5004 5297 532085841 532085531 2.420000e-103 387.0
17 TraesCS2D01G307400 chr4D 81.436 738 127 7 3729 4458 63044361 63043626 3.690000e-166 595.0
18 TraesCS2D01G307400 chr4D 96.639 238 6 2 5298 5533 16788499 16788262 1.440000e-105 394.0
19 TraesCS2D01G307400 chr4B 81.030 738 130 7 3729 4458 93409084 93408349 3.720000e-161 579.0
20 TraesCS2D01G307400 chr4B 91.189 227 20 0 1217 1443 93412245 93412019 5.380000e-80 309.0
21 TraesCS2D01G307400 chr4A 81.055 739 126 13 3730 4458 533261409 533262143 1.340000e-160 577.0
22 TraesCS2D01G307400 chr4A 91.630 227 19 0 1217 1443 533258397 533258623 1.160000e-81 315.0
23 TraesCS2D01G307400 chr6D 97.899 238 3 2 5298 5533 75896972 75897209 1.430000e-110 411.0
24 TraesCS2D01G307400 chr6D 96.624 237 6 2 5298 5533 77807343 77807108 5.200000e-105 392.0
25 TraesCS2D01G307400 chr7D 96.250 240 7 2 5296 5533 573371743 573371504 5.200000e-105 392.0
26 TraesCS2D01G307400 chr7D 92.857 182 6 5 4807 4983 452688188 452688009 1.980000e-64 257.0
27 TraesCS2D01G307400 chr5D 96.234 239 7 2 5297 5533 437207584 437207346 1.870000e-104 390.0
28 TraesCS2D01G307400 chr5D 95.455 242 8 3 5295 5533 502667077 502667318 3.130000e-102 383.0
29 TraesCS2D01G307400 chr5D 89.637 193 14 3 4799 4991 319144780 319144594 1.990000e-59 241.0
30 TraesCS2D01G307400 chr3D 96.203 237 7 2 5298 5532 14023728 14023492 2.420000e-103 387.0
31 TraesCS2D01G307400 chr3D 89.163 203 13 4 4799 4993 600530994 600531195 1.540000e-60 244.0
32 TraesCS2D01G307400 chrUn 95.417 240 9 2 5296 5533 137732968 137733207 1.120000e-101 381.0
33 TraesCS2D01G307400 chrUn 85.580 319 44 2 4141 4458 478813213 478812896 3.190000e-87 333.0
34 TraesCS2D01G307400 chrUn 90.052 191 13 5 4791 4979 369332788 369332974 5.540000e-60 243.0
35 TraesCS2D01G307400 chr5A 93.923 181 8 2 4807 4985 74676078 74676257 2.540000e-68 270.0
36 TraesCS2D01G307400 chr1A 90.052 191 13 5 4791 4979 588184700 588184886 5.540000e-60 243.0
37 TraesCS2D01G307400 chr1A 90.052 191 13 5 4791 4979 588191422 588191608 5.540000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G307400 chr2D 394118241 394123773 5532 True 10218.000000 10218 100.000000 1 5533 1 chr2D.!!$R2 5532
1 TraesCS2D01G307400 chr2B 465823209 465830531 7322 True 1301.000000 2933 92.091200 21 5297 5 chr2B.!!$R1 5276
2 TraesCS2D01G307400 chr2A 532085531 532090650 5119 True 933.857143 2124 91.326714 1 5297 7 chr2A.!!$R1 5296
3 TraesCS2D01G307400 chr4D 63043626 63044361 735 True 595.000000 595 81.436000 3729 4458 1 chr4D.!!$R2 729
4 TraesCS2D01G307400 chr4B 93408349 93412245 3896 True 444.000000 579 86.109500 1217 4458 2 chr4B.!!$R1 3241
5 TraesCS2D01G307400 chr4A 533258397 533262143 3746 False 446.000000 577 86.342500 1217 4458 2 chr4A.!!$F1 3241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 589 0.764369 TGTTGACCTGGGAGCTGACT 60.764 55.0 0.00 0.0 0.0 3.41 F
1450 1541 0.107116 GAGCTCTCGGTACTCCTCCA 60.107 60.0 6.43 0.0 0.0 3.86 F
2549 2971 0.033504 ATCAACTCAGAACACGCCGT 59.966 50.0 0.00 0.0 0.0 5.68 F
4295 6446 0.033991 TCGGCTTCTACCTCAGCTCT 60.034 55.0 0.00 0.0 36.2 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 2953 0.179094 AACGGCGTGTTCTGAGTTGA 60.179 50.0 15.70 0.00 35.27 3.18 R
3152 3648 0.257328 TCAGCAGGACCAAAACCACA 59.743 50.0 0.00 0.00 0.00 4.17 R
4440 6594 0.036164 TTGTACCACCTTGCGCAGAT 59.964 50.0 11.31 0.00 0.00 2.90 R
5446 9794 0.037605 CATACGATCTAACCGGGCCC 60.038 60.0 13.57 13.57 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 64 9.625747 TGGTGCAAAATCTGTCAAATATATCTA 57.374 29.630 0.00 0.00 0.00 1.98
228 232 3.847602 CCTGCCTCAGCTCTCCCG 61.848 72.222 0.00 0.00 40.80 5.14
229 233 2.757508 CTGCCTCAGCTCTCCCGA 60.758 66.667 0.00 0.00 40.80 5.14
230 234 2.757508 TGCCTCAGCTCTCCCGAG 60.758 66.667 0.00 0.00 40.80 4.63
231 235 2.441164 GCCTCAGCTCTCCCGAGA 60.441 66.667 0.00 0.00 39.74 4.04
232 236 2.055042 GCCTCAGCTCTCCCGAGAA 61.055 63.158 0.00 0.00 39.74 2.87
233 237 1.813192 CCTCAGCTCTCCCGAGAAC 59.187 63.158 0.00 0.00 39.74 3.01
234 238 0.967887 CCTCAGCTCTCCCGAGAACA 60.968 60.000 0.00 0.00 39.74 3.18
235 239 0.891373 CTCAGCTCTCCCGAGAACAA 59.109 55.000 0.00 0.00 39.74 2.83
236 240 1.480137 CTCAGCTCTCCCGAGAACAAT 59.520 52.381 0.00 0.00 39.74 2.71
237 241 2.690497 CTCAGCTCTCCCGAGAACAATA 59.310 50.000 0.00 0.00 39.74 1.90
238 242 3.300388 TCAGCTCTCCCGAGAACAATAT 58.700 45.455 0.00 0.00 39.74 1.28
239 243 3.706594 TCAGCTCTCCCGAGAACAATATT 59.293 43.478 0.00 0.00 39.74 1.28
240 244 3.806521 CAGCTCTCCCGAGAACAATATTG 59.193 47.826 14.01 14.01 39.74 1.90
241 245 3.452627 AGCTCTCCCGAGAACAATATTGT 59.547 43.478 15.47 15.47 39.74 2.71
242 246 3.804873 GCTCTCCCGAGAACAATATTGTC 59.195 47.826 21.02 14.03 39.74 3.18
243 247 4.442192 GCTCTCCCGAGAACAATATTGTCT 60.442 45.833 21.02 17.98 39.74 3.41
244 248 5.665459 CTCTCCCGAGAACAATATTGTCTT 58.335 41.667 21.02 12.28 41.31 3.01
261 265 6.672266 TTGTCTTGAGAGAGAACCAATACT 57.328 37.500 0.00 0.00 30.90 2.12
262 266 6.672266 TGTCTTGAGAGAGAACCAATACTT 57.328 37.500 0.00 0.00 31.07 2.24
347 351 9.312904 ACATCAATTCCACTATATTTTATGGGG 57.687 33.333 0.00 0.00 32.73 4.96
348 352 9.312904 CATCAATTCCACTATATTTTATGGGGT 57.687 33.333 0.00 0.00 32.73 4.95
349 353 8.934023 TCAATTCCACTATATTTTATGGGGTC 57.066 34.615 0.00 0.00 32.73 4.46
350 354 8.506921 TCAATTCCACTATATTTTATGGGGTCA 58.493 33.333 0.00 0.00 32.73 4.02
351 355 9.312904 CAATTCCACTATATTTTATGGGGTCAT 57.687 33.333 0.00 0.00 37.40 3.06
352 356 9.533831 AATTCCACTATATTTTATGGGGTCATC 57.466 33.333 0.00 0.00 34.96 2.92
353 357 7.640577 TCCACTATATTTTATGGGGTCATCA 57.359 36.000 0.00 0.00 34.96 3.07
393 397 0.881796 GGCTGTGGTTTTAGCTGTCC 59.118 55.000 0.00 0.00 39.80 4.02
456 491 6.793492 AGCAGTAATCTCAGTCAAAACTTC 57.207 37.500 0.00 0.00 31.71 3.01
469 504 4.036380 GTCAAAACTTCGGTCAGGAAACAT 59.964 41.667 0.00 0.00 0.00 2.71
470 505 4.642885 TCAAAACTTCGGTCAGGAAACATT 59.357 37.500 0.00 0.00 0.00 2.71
489 528 7.588143 AACATTTTCTCTCTATCTGAACGTG 57.412 36.000 0.00 0.00 0.00 4.49
506 545 1.802960 CGTGCTCTGCTTCAGTCAATT 59.197 47.619 0.00 0.00 32.61 2.32
509 548 3.072211 TGCTCTGCTTCAGTCAATTCAG 58.928 45.455 0.00 0.00 32.61 3.02
550 589 0.764369 TGTTGACCTGGGAGCTGACT 60.764 55.000 0.00 0.00 0.00 3.41
561 600 2.346739 GCTGACTGCTGGCTGAGT 59.653 61.111 7.54 0.00 38.95 3.41
564 603 1.609061 GCTGACTGCTGGCTGAGTTTA 60.609 52.381 7.54 0.00 38.95 2.01
565 604 2.344950 CTGACTGCTGGCTGAGTTTAG 58.655 52.381 6.47 0.00 0.00 1.85
566 605 1.970640 TGACTGCTGGCTGAGTTTAGA 59.029 47.619 6.47 0.00 0.00 2.10
567 606 2.568956 TGACTGCTGGCTGAGTTTAGAT 59.431 45.455 6.47 0.00 0.00 1.98
568 607 3.008375 TGACTGCTGGCTGAGTTTAGATT 59.992 43.478 6.47 0.00 0.00 2.40
569 608 4.006319 GACTGCTGGCTGAGTTTAGATTT 58.994 43.478 6.47 0.00 0.00 2.17
570 609 4.006319 ACTGCTGGCTGAGTTTAGATTTC 58.994 43.478 6.47 0.00 0.00 2.17
571 610 3.347216 TGCTGGCTGAGTTTAGATTTCC 58.653 45.455 0.00 0.00 0.00 3.13
573 612 3.758554 GCTGGCTGAGTTTAGATTTCCAA 59.241 43.478 0.00 0.00 0.00 3.53
578 617 5.123027 GGCTGAGTTTAGATTTCCAACAGAG 59.877 44.000 0.00 0.00 0.00 3.35
594 634 2.289072 ACAGAGAAGGAACACACATCGG 60.289 50.000 0.00 0.00 0.00 4.18
854 917 2.959071 GAGCAGAGTCATCGCCGC 60.959 66.667 0.00 0.00 0.00 6.53
948 1030 1.140589 CAGAGCTAGCGGTGACTGG 59.859 63.158 9.55 0.00 0.00 4.00
992 1074 2.672908 CTAACCCGGTTGACCCCC 59.327 66.667 13.43 0.00 0.00 5.40
1110 1192 1.742761 CCGTCTTCGTCCTAGGTACA 58.257 55.000 9.08 0.00 35.01 2.90
1382 1473 3.144193 CTCGGCGGCTTCCTCTCT 61.144 66.667 7.21 0.00 0.00 3.10
1450 1541 0.107116 GAGCTCTCGGTACTCCTCCA 60.107 60.000 6.43 0.00 0.00 3.86
1451 1542 0.394625 AGCTCTCGGTACTCCTCCAC 60.395 60.000 0.00 0.00 0.00 4.02
1453 1544 1.134159 GCTCTCGGTACTCCTCCACTA 60.134 57.143 0.00 0.00 0.00 2.74
1456 1547 2.106166 TCTCGGTACTCCTCCACTATCC 59.894 54.545 0.00 0.00 0.00 2.59
1457 1548 2.106857 CTCGGTACTCCTCCACTATCCT 59.893 54.545 0.00 0.00 0.00 3.24
1459 1550 3.053095 TCGGTACTCCTCCACTATCCTTT 60.053 47.826 0.00 0.00 0.00 3.11
1464 1555 3.777522 ACTCCTCCACTATCCTTTCCTTG 59.222 47.826 0.00 0.00 0.00 3.61
1487 1578 9.237187 CTTGCTCACAATCTATATACTCCTAGA 57.763 37.037 0.00 0.00 34.61 2.43
1520 1611 1.289530 ACTAGGAAGGAGTGGCTAGCT 59.710 52.381 15.72 0.00 0.00 3.32
1522 1613 1.153269 GGAAGGAGTGGCTAGCTGC 60.153 63.158 15.72 7.80 41.94 5.25
1524 1615 0.461693 GAAGGAGTGGCTAGCTGCAG 60.462 60.000 15.72 10.11 45.15 4.41
1525 1616 1.197430 AAGGAGTGGCTAGCTGCAGT 61.197 55.000 16.64 7.88 45.15 4.40
1526 1617 1.449246 GGAGTGGCTAGCTGCAGTG 60.449 63.158 16.64 7.33 45.15 3.66
1527 1618 1.593787 GAGTGGCTAGCTGCAGTGA 59.406 57.895 16.64 2.32 45.15 3.41
1609 1890 4.094294 CGTGTGAGAGTGTTTTTCCTTTGA 59.906 41.667 0.00 0.00 0.00 2.69
1618 1899 2.265589 TTTTCCTTTGAGACCGACCC 57.734 50.000 0.00 0.00 0.00 4.46
1813 2127 2.832129 TGTTTGTTGTTGTTGGGGCTTA 59.168 40.909 0.00 0.00 0.00 3.09
1827 2141 2.035449 GGGGCTTACCTGAAAACAACAC 59.965 50.000 0.00 0.00 40.03 3.32
1862 2176 4.819105 TGTGCTAGTGTTACTTGCCTAT 57.181 40.909 11.66 0.00 44.40 2.57
1864 2178 4.935205 TGTGCTAGTGTTACTTGCCTATTG 59.065 41.667 11.66 0.00 44.40 1.90
1866 2180 5.411669 GTGCTAGTGTTACTTGCCTATTGTT 59.588 40.000 11.66 0.00 44.40 2.83
1867 2181 6.001460 TGCTAGTGTTACTTGCCTATTGTTT 58.999 36.000 11.66 0.00 44.40 2.83
1868 2182 7.118680 GTGCTAGTGTTACTTGCCTATTGTTTA 59.881 37.037 11.66 0.00 44.40 2.01
1869 2183 7.118680 TGCTAGTGTTACTTGCCTATTGTTTAC 59.881 37.037 11.66 0.00 44.40 2.01
1870 2184 7.333672 GCTAGTGTTACTTGCCTATTGTTTACT 59.666 37.037 4.43 0.00 40.28 2.24
1871 2185 9.216117 CTAGTGTTACTTGCCTATTGTTTACTT 57.784 33.333 0.00 0.00 0.00 2.24
1872 2186 7.871853 AGTGTTACTTGCCTATTGTTTACTTG 58.128 34.615 0.00 0.00 0.00 3.16
1873 2187 7.717875 AGTGTTACTTGCCTATTGTTTACTTGA 59.282 33.333 0.00 0.00 0.00 3.02
1874 2188 7.801783 GTGTTACTTGCCTATTGTTTACTTGAC 59.198 37.037 0.00 0.00 0.00 3.18
1876 2190 6.560253 ACTTGCCTATTGTTTACTTGACAG 57.440 37.500 0.00 0.00 0.00 3.51
1880 2194 6.058833 TGCCTATTGTTTACTTGACAGTTGA 58.941 36.000 0.00 0.00 34.06 3.18
1887 2201 6.869695 TGTTTACTTGACAGTTGACACTCTA 58.130 36.000 0.00 0.00 34.06 2.43
1888 2202 6.978659 TGTTTACTTGACAGTTGACACTCTAG 59.021 38.462 0.00 0.00 34.06 2.43
1889 2203 6.710597 TTACTTGACAGTTGACACTCTAGT 57.289 37.500 0.00 0.00 34.06 2.57
1906 2220 5.830991 ACTCTAGTTATCCTAGGCACTTCTG 59.169 44.000 2.96 2.80 43.00 3.02
1918 2232 4.570930 AGGCACTTCTGTCTTTTACTAGC 58.429 43.478 0.00 0.00 27.25 3.42
1920 2234 4.755123 GGCACTTCTGTCTTTTACTAGCAA 59.245 41.667 0.00 0.00 0.00 3.91
1921 2235 5.238650 GGCACTTCTGTCTTTTACTAGCAAA 59.761 40.000 0.00 0.00 0.00 3.68
1923 2237 7.363431 GCACTTCTGTCTTTTACTAGCAAAAT 58.637 34.615 1.33 0.00 0.00 1.82
1929 2243 7.878127 TCTGTCTTTTACTAGCAAAATACAGCT 59.122 33.333 26.75 0.71 44.29 4.24
1983 2304 4.217550 TGGAAACATGGAATCGAAGAAACC 59.782 41.667 0.00 0.00 35.44 3.27
1988 2309 4.827284 ACATGGAATCGAAGAAACCAAACT 59.173 37.500 0.00 0.00 45.26 2.66
1989 2310 5.301805 ACATGGAATCGAAGAAACCAAACTT 59.698 36.000 0.00 0.00 45.26 2.66
1990 2311 6.488683 ACATGGAATCGAAGAAACCAAACTTA 59.511 34.615 0.00 0.00 45.26 2.24
2044 2448 8.200364 ACATATGCTTTGCAATGGATTTTTAC 57.800 30.769 21.43 1.00 43.62 2.01
2272 2685 2.125350 CCAGTTCTCCAGCTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
2523 2945 6.490040 TCCTATTGCAAGGGTAAGAATAATGC 59.510 38.462 17.27 0.00 37.24 3.56
2524 2946 6.491403 CCTATTGCAAGGGTAAGAATAATGCT 59.509 38.462 4.94 0.00 33.66 3.79
2526 2948 5.581126 TGCAAGGGTAAGAATAATGCTTG 57.419 39.130 0.00 0.00 33.66 4.01
2528 2950 5.893255 TGCAAGGGTAAGAATAATGCTTGAT 59.107 36.000 0.00 0.00 33.66 2.57
2529 2951 6.183360 TGCAAGGGTAAGAATAATGCTTGATG 60.183 38.462 0.00 0.00 33.66 3.07
2531 2953 7.255730 GCAAGGGTAAGAATAATGCTTGATGAT 60.256 37.037 0.00 0.00 0.00 2.45
2532 2954 7.992754 AGGGTAAGAATAATGCTTGATGATC 57.007 36.000 0.00 0.00 0.00 2.92
2533 2955 7.520798 AGGGTAAGAATAATGCTTGATGATCA 58.479 34.615 0.00 0.00 0.00 2.92
2535 2957 8.078596 GGGTAAGAATAATGCTTGATGATCAAC 58.921 37.037 3.29 0.00 32.21 3.18
2536 2958 8.844244 GGTAAGAATAATGCTTGATGATCAACT 58.156 33.333 3.29 0.00 32.21 3.16
2537 2959 9.875675 GTAAGAATAATGCTTGATGATCAACTC 57.124 33.333 3.29 0.09 32.21 3.01
2538 2960 8.515695 AAGAATAATGCTTGATGATCAACTCA 57.484 30.769 3.29 5.87 38.53 3.41
2540 2962 7.991460 AGAATAATGCTTGATGATCAACTCAGA 59.009 33.333 3.29 0.00 37.28 3.27
2541 2963 8.515695 AATAATGCTTGATGATCAACTCAGAA 57.484 30.769 3.29 0.00 37.28 3.02
2543 2965 4.644498 TGCTTGATGATCAACTCAGAACA 58.356 39.130 3.29 0.00 37.28 3.18
2544 2966 4.453478 TGCTTGATGATCAACTCAGAACAC 59.547 41.667 3.29 0.00 37.28 3.32
2549 2971 0.033504 ATCAACTCAGAACACGCCGT 59.966 50.000 0.00 0.00 0.00 5.68
2550 2972 0.179094 TCAACTCAGAACACGCCGTT 60.179 50.000 0.00 0.00 41.86 4.44
2560 2982 2.380084 ACACGCCGTTCTGATTATGT 57.620 45.000 0.00 0.00 0.00 2.29
2561 2983 3.513680 ACACGCCGTTCTGATTATGTA 57.486 42.857 0.00 0.00 0.00 2.29
2563 2985 3.119245 ACACGCCGTTCTGATTATGTACT 60.119 43.478 0.00 0.00 0.00 2.73
2564 2986 4.096833 ACACGCCGTTCTGATTATGTACTA 59.903 41.667 0.00 0.00 0.00 1.82
2565 2987 4.440103 CACGCCGTTCTGATTATGTACTAC 59.560 45.833 0.00 0.00 0.00 2.73
2569 2991 5.233689 GCCGTTCTGATTATGTACTACCAAC 59.766 44.000 0.00 0.00 0.00 3.77
2571 2993 6.696148 CCGTTCTGATTATGTACTACCAACTC 59.304 42.308 0.00 0.00 0.00 3.01
2572 2994 6.414109 CGTTCTGATTATGTACTACCAACTCG 59.586 42.308 0.00 0.00 0.00 4.18
2573 2995 6.387041 TCTGATTATGTACTACCAACTCGG 57.613 41.667 0.00 0.00 42.50 4.63
2574 2996 5.301045 TCTGATTATGTACTACCAACTCGGG 59.699 44.000 0.00 0.00 40.22 5.14
2590 3012 6.183360 CCAACTCGGGTTCACTTCACTATATA 60.183 42.308 0.00 0.00 32.73 0.86
2591 3013 7.434492 CAACTCGGGTTCACTTCACTATATAT 58.566 38.462 0.00 0.00 32.73 0.86
2594 3016 9.970553 ACTCGGGTTCACTTCACTATATATATA 57.029 33.333 2.49 2.49 0.00 0.86
2778 3244 4.187694 GTCAAACATCTCCTTCCTGCTAG 58.812 47.826 0.00 0.00 0.00 3.42
2783 3249 5.505181 ACATCTCCTTCCTGCTAGAAAAA 57.495 39.130 0.00 0.00 0.00 1.94
2833 3299 6.942576 ACTGCAGTATATCCAAGAACTTTTGT 59.057 34.615 20.16 0.00 0.00 2.83
2857 3323 6.595326 GTCAAGACAAATGATCTGGTCACATA 59.405 38.462 0.00 0.00 40.28 2.29
2863 3329 8.442632 ACAAATGATCTGGTCACATAACTATG 57.557 34.615 0.00 0.00 40.28 2.23
2890 3363 8.164733 TCCCTCTAGTACTCTATGGTTAGATTG 58.835 40.741 0.00 0.00 33.98 2.67
3014 3490 3.329520 TGGGGCCATATGATAGGTACAAC 59.670 47.826 4.39 0.00 0.00 3.32
3133 3626 7.307811 GGTTTGTGACTTATTGACTGTTAGGAC 60.308 40.741 0.00 0.00 0.00 3.85
3141 3634 3.364889 TGACTGTTAGGACGTCAGTTG 57.635 47.619 18.91 4.56 41.58 3.16
3203 3699 4.937201 ACTGACTGCGGATTATGTATGA 57.063 40.909 0.00 0.00 0.00 2.15
3205 3701 5.858381 ACTGACTGCGGATTATGTATGATT 58.142 37.500 0.00 0.00 0.00 2.57
3206 3702 6.291377 ACTGACTGCGGATTATGTATGATTT 58.709 36.000 0.00 0.00 0.00 2.17
3207 3703 6.203530 ACTGACTGCGGATTATGTATGATTTG 59.796 38.462 0.00 0.00 0.00 2.32
3208 3704 5.049474 TGACTGCGGATTATGTATGATTTGC 60.049 40.000 0.00 0.00 0.00 3.68
3209 3705 5.065914 ACTGCGGATTATGTATGATTTGCT 58.934 37.500 0.00 0.00 0.00 3.91
3210 3706 5.049198 ACTGCGGATTATGTATGATTTGCTG 60.049 40.000 0.00 0.00 0.00 4.41
3232 3728 0.518636 ACGTGTGCTGATGTGCAATC 59.481 50.000 0.00 0.00 45.12 2.67
3272 3768 3.376234 CAGCATTGGTTCGAGATGACAAT 59.624 43.478 4.88 0.00 32.43 2.71
3371 4415 6.707440 TTGACACAGAAATGTACAATTGGT 57.293 33.333 10.83 0.00 31.24 3.67
3372 4416 7.809546 TTGACACAGAAATGTACAATTGGTA 57.190 32.000 10.83 0.00 31.24 3.25
3373 4417 7.433708 TGACACAGAAATGTACAATTGGTAG 57.566 36.000 10.83 0.00 31.24 3.18
3375 4419 8.151596 TGACACAGAAATGTACAATTGGTAGTA 58.848 33.333 10.83 0.00 31.24 1.82
3376 4420 8.547967 ACACAGAAATGTACAATTGGTAGTAG 57.452 34.615 10.83 0.00 31.13 2.57
3377 4421 7.606456 ACACAGAAATGTACAATTGGTAGTAGG 59.394 37.037 10.83 0.00 31.13 3.18
3378 4422 6.598064 ACAGAAATGTACAATTGGTAGTAGGC 59.402 38.462 10.83 0.00 31.13 3.93
3379 4423 5.815740 AGAAATGTACAATTGGTAGTAGGCG 59.184 40.000 10.83 0.00 31.13 5.52
3380 4424 4.748277 ATGTACAATTGGTAGTAGGCGT 57.252 40.909 10.83 0.00 31.13 5.68
3385 4875 1.180029 ATTGGTAGTAGGCGTCGTGT 58.820 50.000 0.00 0.00 0.00 4.49
3388 4878 0.098376 GGTAGTAGGCGTCGTGTCAG 59.902 60.000 0.00 0.00 0.00 3.51
3391 4881 1.085091 AGTAGGCGTCGTGTCAGTAG 58.915 55.000 0.00 0.00 0.00 2.57
3408 4898 8.119226 GTGTCAGTAGCATTTACATCAGATTTC 58.881 37.037 0.00 0.00 0.00 2.17
3418 4908 6.925610 TTACATCAGATTTCGCTATTTGCT 57.074 33.333 0.00 0.00 40.11 3.91
3432 4922 1.817357 TTTGCTGCTGATCCTGACTG 58.183 50.000 0.00 0.00 0.00 3.51
3439 4929 2.289257 TGCTGATCCTGACTGACTTGTG 60.289 50.000 0.00 0.00 0.00 3.33
3440 4930 2.289320 GCTGATCCTGACTGACTTGTGT 60.289 50.000 0.00 0.00 0.00 3.72
3441 4931 3.056536 GCTGATCCTGACTGACTTGTGTA 60.057 47.826 0.00 0.00 0.00 2.90
3442 4932 4.561530 GCTGATCCTGACTGACTTGTGTAA 60.562 45.833 0.00 0.00 0.00 2.41
3443 4933 4.883083 TGATCCTGACTGACTTGTGTAAC 58.117 43.478 0.00 0.00 37.35 2.50
3601 5459 3.017323 CCGCATCCATCGTTCTGC 58.983 61.111 0.00 0.00 0.00 4.26
3618 5476 0.689055 TGCTGACCAGATTGCTCTGT 59.311 50.000 0.47 0.00 46.33 3.41
3621 5479 2.619147 CTGACCAGATTGCTCTGTCTG 58.381 52.381 2.63 2.60 46.33 3.51
4169 6320 2.668280 GCAGTTCCTCGTGTTCGGC 61.668 63.158 0.00 0.00 37.69 5.54
4295 6446 0.033991 TCGGCTTCTACCTCAGCTCT 60.034 55.000 0.00 0.00 36.20 4.09
4440 6594 3.306364 GCTCAACTTCTTCTGCTACCTGA 60.306 47.826 0.00 0.00 0.00 3.86
4445 6599 3.118811 ACTTCTTCTGCTACCTGATCTGC 60.119 47.826 0.00 0.00 0.00 4.26
4539 6693 2.109774 AGGAGATCAGCTGAAGACCTG 58.890 52.381 26.68 0.00 0.00 4.00
4710 6870 8.526218 CATATGTATGCTAGTTCTACCACAAG 57.474 38.462 0.00 0.00 0.00 3.16
4743 9074 8.429641 TCTTCAGTAAACTTATTTCAGACACCT 58.570 33.333 0.00 0.00 0.00 4.00
4748 9079 3.412386 ACTTATTTCAGACACCTGTGGC 58.588 45.455 1.91 0.00 41.16 5.01
4808 9139 5.871396 ACAGATAGGATGTTGATACCGTT 57.129 39.130 0.00 0.00 0.00 4.44
4809 9140 6.235231 ACAGATAGGATGTTGATACCGTTT 57.765 37.500 0.00 0.00 0.00 3.60
4810 9141 6.049149 ACAGATAGGATGTTGATACCGTTTG 58.951 40.000 0.00 0.00 0.00 2.93
4811 9142 6.049149 CAGATAGGATGTTGATACCGTTTGT 58.951 40.000 0.00 0.00 0.00 2.83
4812 9143 6.201044 CAGATAGGATGTTGATACCGTTTGTC 59.799 42.308 0.00 0.00 0.00 3.18
4813 9144 4.553330 AGGATGTTGATACCGTTTGTCT 57.447 40.909 0.00 0.00 0.00 3.41
4814 9145 5.670792 AGGATGTTGATACCGTTTGTCTA 57.329 39.130 0.00 0.00 0.00 2.59
4815 9146 6.045072 AGGATGTTGATACCGTTTGTCTAA 57.955 37.500 0.00 0.00 0.00 2.10
4816 9147 6.650120 AGGATGTTGATACCGTTTGTCTAAT 58.350 36.000 0.00 0.00 0.00 1.73
4817 9148 7.110155 AGGATGTTGATACCGTTTGTCTAATT 58.890 34.615 0.00 0.00 0.00 1.40
4818 9149 7.280205 AGGATGTTGATACCGTTTGTCTAATTC 59.720 37.037 0.00 0.00 0.00 2.17
4819 9150 7.065324 GGATGTTGATACCGTTTGTCTAATTCA 59.935 37.037 0.00 0.00 0.00 2.57
4820 9151 7.124347 TGTTGATACCGTTTGTCTAATTCAC 57.876 36.000 0.00 0.00 0.00 3.18
4821 9152 6.706716 TGTTGATACCGTTTGTCTAATTCACA 59.293 34.615 0.00 0.00 0.00 3.58
4822 9153 7.389330 TGTTGATACCGTTTGTCTAATTCACAT 59.611 33.333 0.00 0.00 0.00 3.21
4823 9154 7.534085 TGATACCGTTTGTCTAATTCACATC 57.466 36.000 0.00 0.00 0.00 3.06
4824 9155 7.327975 TGATACCGTTTGTCTAATTCACATCT 58.672 34.615 0.00 0.00 0.00 2.90
4825 9156 5.862924 ACCGTTTGTCTAATTCACATCTG 57.137 39.130 0.00 0.00 0.00 2.90
4826 9157 4.695455 ACCGTTTGTCTAATTCACATCTGG 59.305 41.667 0.00 0.00 0.00 3.86
4827 9158 4.935205 CCGTTTGTCTAATTCACATCTGGA 59.065 41.667 0.00 0.00 0.00 3.86
4828 9159 5.586243 CCGTTTGTCTAATTCACATCTGGAT 59.414 40.000 0.00 0.00 0.00 3.41
4829 9160 6.457392 CCGTTTGTCTAATTCACATCTGGATG 60.457 42.308 8.81 8.81 44.15 3.51
4859 9190 9.733556 TTTAAGAATGTTACATCTAAGCTTCCA 57.266 29.630 0.00 0.00 0.00 3.53
4860 9191 7.617041 AAGAATGTTACATCTAAGCTTCCAC 57.383 36.000 0.00 0.00 0.00 4.02
4861 9192 6.711277 AGAATGTTACATCTAAGCTTCCACA 58.289 36.000 0.00 0.00 0.00 4.17
4862 9193 7.168219 AGAATGTTACATCTAAGCTTCCACAA 58.832 34.615 0.00 0.00 0.00 3.33
4863 9194 7.665559 AGAATGTTACATCTAAGCTTCCACAAA 59.334 33.333 0.00 0.00 0.00 2.83
4864 9195 7.944729 ATGTTACATCTAAGCTTCCACAAAT 57.055 32.000 0.00 0.00 0.00 2.32
4865 9196 9.461312 AATGTTACATCTAAGCTTCCACAAATA 57.539 29.630 0.00 0.00 0.00 1.40
4866 9197 9.632638 ATGTTACATCTAAGCTTCCACAAATAT 57.367 29.630 0.00 0.00 0.00 1.28
4874 9205 9.791801 TCTAAGCTTCCACAAATATATAATGCA 57.208 29.630 0.00 0.00 0.00 3.96
4876 9207 6.917533 AGCTTCCACAAATATATAATGCAGC 58.082 36.000 0.00 0.00 0.00 5.25
4877 9208 6.491062 AGCTTCCACAAATATATAATGCAGCA 59.509 34.615 0.00 0.00 0.00 4.41
4878 9209 7.014518 AGCTTCCACAAATATATAATGCAGCAA 59.985 33.333 0.00 0.00 0.00 3.91
4879 9210 7.115378 GCTTCCACAAATATATAATGCAGCAAC 59.885 37.037 0.00 0.00 0.00 4.17
4880 9211 7.579761 TCCACAAATATATAATGCAGCAACA 57.420 32.000 0.00 0.00 0.00 3.33
4881 9212 8.005192 TCCACAAATATATAATGCAGCAACAA 57.995 30.769 0.00 0.00 0.00 2.83
4882 9213 8.136800 TCCACAAATATATAATGCAGCAACAAG 58.863 33.333 0.00 0.00 0.00 3.16
4883 9214 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
4884 9215 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
4932 9263 2.225019 CACAAACAGAGTGGACATCAGC 59.775 50.000 0.00 0.00 33.43 4.26
4933 9264 2.105477 ACAAACAGAGTGGACATCAGCT 59.895 45.455 0.00 0.00 0.00 4.24
4934 9265 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
4935 9266 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
4936 9267 3.883830 ACAGAGTGGACATCAGCTTAG 57.116 47.619 0.00 0.00 0.00 2.18
4937 9268 3.435275 ACAGAGTGGACATCAGCTTAGA 58.565 45.455 0.00 0.00 0.00 2.10
4938 9269 4.029520 ACAGAGTGGACATCAGCTTAGAT 58.970 43.478 0.00 0.00 0.00 1.98
4979 9310 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
4980 9311 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
4981 9312 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
4982 9313 2.043115 AGATGTGTCCTAGACAGACCCA 59.957 50.000 0.00 0.00 43.57 4.51
4983 9314 2.623418 TGTGTCCTAGACAGACCCAT 57.377 50.000 0.00 0.00 43.57 4.00
4984 9315 2.179427 TGTGTCCTAGACAGACCCATG 58.821 52.381 0.00 0.00 43.57 3.66
4985 9316 2.180276 GTGTCCTAGACAGACCCATGT 58.820 52.381 0.00 0.00 43.57 3.21
4986 9317 2.567615 GTGTCCTAGACAGACCCATGTT 59.432 50.000 0.00 0.00 43.57 2.71
4987 9318 2.567169 TGTCCTAGACAGACCCATGTTG 59.433 50.000 0.00 0.00 37.67 3.33
4988 9319 2.832129 GTCCTAGACAGACCCATGTTGA 59.168 50.000 0.00 0.00 32.25 3.18
4989 9320 3.452627 GTCCTAGACAGACCCATGTTGAT 59.547 47.826 0.00 0.00 32.25 2.57
4990 9321 4.649674 GTCCTAGACAGACCCATGTTGATA 59.350 45.833 0.00 0.00 32.25 2.15
4991 9322 5.128827 GTCCTAGACAGACCCATGTTGATAA 59.871 44.000 0.00 0.00 32.25 1.75
4992 9323 5.905331 TCCTAGACAGACCCATGTTGATAAT 59.095 40.000 0.00 0.00 32.25 1.28
4993 9324 5.994054 CCTAGACAGACCCATGTTGATAATG 59.006 44.000 0.00 0.00 32.25 1.90
4994 9325 5.441718 AGACAGACCCATGTTGATAATGT 57.558 39.130 0.00 0.00 32.25 2.71
4995 9326 6.560003 AGACAGACCCATGTTGATAATGTA 57.440 37.500 0.00 0.00 32.25 2.29
4996 9327 6.957631 AGACAGACCCATGTTGATAATGTAA 58.042 36.000 0.00 0.00 32.25 2.41
4997 9328 6.823689 AGACAGACCCATGTTGATAATGTAAC 59.176 38.462 0.00 0.00 32.25 2.50
4998 9329 5.885912 ACAGACCCATGTTGATAATGTAACC 59.114 40.000 0.00 0.00 0.00 2.85
5070 9401 6.543100 TCAGAACACATAATGCATGCAAGATA 59.457 34.615 26.68 17.89 38.29 1.98
5074 9405 7.149569 ACACATAATGCATGCAAGATATACC 57.850 36.000 26.68 0.00 38.29 2.73
5090 9421 7.358770 AGATATACCTATCATAGCCAAGCAG 57.641 40.000 0.00 0.00 36.90 4.24
5097 9434 4.913335 ATCATAGCCAAGCAGTTCAATG 57.087 40.909 0.00 0.00 0.00 2.82
5148 9485 6.583050 GGTCATTCACTATGCTCGATAAGTAC 59.417 42.308 0.00 0.00 34.06 2.73
5154 9491 8.760103 TCACTATGCTCGATAAGTACTACTAG 57.240 38.462 0.00 0.00 0.00 2.57
5155 9492 7.331440 TCACTATGCTCGATAAGTACTACTAGC 59.669 40.741 0.00 5.17 0.00 3.42
5297 9645 3.465871 CTTCTTCAGGCTATCCTTCAGC 58.534 50.000 0.00 0.00 41.93 4.26
5298 9646 1.410517 TCTTCAGGCTATCCTTCAGCG 59.589 52.381 0.00 0.00 41.93 5.18
5299 9647 1.137872 CTTCAGGCTATCCTTCAGCGT 59.862 52.381 0.00 0.00 41.93 5.07
5300 9648 1.195115 TCAGGCTATCCTTCAGCGTT 58.805 50.000 0.00 0.00 41.93 4.84
5301 9649 1.555075 TCAGGCTATCCTTCAGCGTTT 59.445 47.619 0.00 0.00 41.93 3.60
5302 9650 1.936547 CAGGCTATCCTTCAGCGTTTC 59.063 52.381 0.00 0.00 41.93 2.78
5303 9651 1.834263 AGGCTATCCTTCAGCGTTTCT 59.166 47.619 0.00 0.00 40.66 2.52
5304 9652 1.936547 GGCTATCCTTCAGCGTTTCTG 59.063 52.381 0.00 0.00 44.21 3.02
5305 9653 1.328986 GCTATCCTTCAGCGTTTCTGC 59.671 52.381 0.00 0.00 42.56 4.26
5307 9655 1.731720 ATCCTTCAGCGTTTCTGCTC 58.268 50.000 0.00 0.00 45.23 4.26
5308 9656 0.320771 TCCTTCAGCGTTTCTGCTCC 60.321 55.000 0.00 0.00 45.23 4.70
5309 9657 1.630244 CCTTCAGCGTTTCTGCTCCG 61.630 60.000 0.00 0.00 45.23 4.63
5310 9658 1.630244 CTTCAGCGTTTCTGCTCCGG 61.630 60.000 0.00 0.00 45.23 5.14
5311 9659 2.357517 CAGCGTTTCTGCTCCGGT 60.358 61.111 0.00 0.00 45.23 5.28
5312 9660 2.357517 AGCGTTTCTGCTCCGGTG 60.358 61.111 0.00 0.00 42.95 4.94
5313 9661 4.090057 GCGTTTCTGCTCCGGTGC 62.090 66.667 21.41 21.41 0.00 5.01
5314 9662 2.357517 CGTTTCTGCTCCGGTGCT 60.358 61.111 27.24 0.00 0.00 4.40
5315 9663 2.383527 CGTTTCTGCTCCGGTGCTC 61.384 63.158 27.24 12.35 0.00 4.26
5316 9664 2.035442 GTTTCTGCTCCGGTGCTCC 61.035 63.158 27.24 8.50 0.00 4.70
5317 9665 3.254024 TTTCTGCTCCGGTGCTCCC 62.254 63.158 27.24 1.06 0.00 4.30
5337 9685 3.114616 CTGGCTGAACGCGAGGTG 61.115 66.667 15.93 0.78 40.38 4.00
5338 9686 4.680237 TGGCTGAACGCGAGGTGG 62.680 66.667 15.93 0.00 40.44 4.61
5339 9687 4.373116 GGCTGAACGCGAGGTGGA 62.373 66.667 15.93 0.00 40.44 4.02
5340 9688 2.357034 GCTGAACGCGAGGTGGAA 60.357 61.111 15.93 0.00 0.00 3.53
5341 9689 1.959226 GCTGAACGCGAGGTGGAAA 60.959 57.895 15.93 0.00 0.00 3.13
5342 9690 1.503818 GCTGAACGCGAGGTGGAAAA 61.504 55.000 15.93 0.00 0.00 2.29
5343 9691 0.941542 CTGAACGCGAGGTGGAAAAA 59.058 50.000 15.93 0.00 0.00 1.94
5344 9692 0.658897 TGAACGCGAGGTGGAAAAAC 59.341 50.000 15.93 0.00 0.00 2.43
5345 9693 0.658897 GAACGCGAGGTGGAAAAACA 59.341 50.000 15.93 0.00 0.00 2.83
5346 9694 0.379316 AACGCGAGGTGGAAAAACAC 59.621 50.000 15.93 0.00 40.60 3.32
5347 9695 0.745128 ACGCGAGGTGGAAAAACACA 60.745 50.000 15.93 0.00 43.08 3.72
5348 9696 0.591170 CGCGAGGTGGAAAAACACAT 59.409 50.000 0.00 0.00 43.08 3.21
5349 9697 1.399727 CGCGAGGTGGAAAAACACATC 60.400 52.381 0.00 1.35 45.69 3.06
5352 9700 3.537793 GAGGTGGAAAAACACATCGAC 57.462 47.619 0.00 0.00 41.46 4.20
5353 9701 1.871039 AGGTGGAAAAACACATCGACG 59.129 47.619 0.00 0.00 43.08 5.12
5354 9702 1.069500 GGTGGAAAAACACATCGACGG 60.069 52.381 0.00 0.00 43.08 4.79
5355 9703 0.589223 TGGAAAAACACATCGACGGC 59.411 50.000 0.00 0.00 0.00 5.68
5356 9704 0.109919 GGAAAAACACATCGACGGCC 60.110 55.000 0.00 0.00 0.00 6.13
5357 9705 0.589223 GAAAAACACATCGACGGCCA 59.411 50.000 2.24 0.00 0.00 5.36
5358 9706 0.591170 AAAAACACATCGACGGCCAG 59.409 50.000 2.24 0.00 0.00 4.85
5359 9707 1.234615 AAAACACATCGACGGCCAGG 61.235 55.000 2.24 0.00 0.00 4.45
5360 9708 2.107041 AAACACATCGACGGCCAGGA 62.107 55.000 2.24 0.00 0.00 3.86
5361 9709 1.899437 AACACATCGACGGCCAGGAT 61.899 55.000 2.24 0.00 0.00 3.24
5362 9710 1.884464 CACATCGACGGCCAGGATG 60.884 63.158 20.29 20.29 42.45 3.51
5363 9711 2.058001 ACATCGACGGCCAGGATGA 61.058 57.895 25.83 8.31 39.89 2.92
5364 9712 1.143838 CATCGACGGCCAGGATGAA 59.856 57.895 18.18 0.00 39.89 2.57
5365 9713 1.144057 ATCGACGGCCAGGATGAAC 59.856 57.895 2.24 0.00 39.69 3.18
5366 9714 2.311688 ATCGACGGCCAGGATGAACC 62.312 60.000 2.24 0.00 39.69 3.62
5367 9715 2.668632 GACGGCCAGGATGAACCA 59.331 61.111 2.24 0.00 39.69 3.67
5368 9716 1.002624 GACGGCCAGGATGAACCAA 60.003 57.895 2.24 0.00 39.69 3.67
5369 9717 0.608035 GACGGCCAGGATGAACCAAA 60.608 55.000 2.24 0.00 39.69 3.28
5370 9718 0.178975 ACGGCCAGGATGAACCAAAA 60.179 50.000 2.24 0.00 39.69 2.44
5371 9719 0.965439 CGGCCAGGATGAACCAAAAA 59.035 50.000 2.24 0.00 39.69 1.94
5372 9720 1.067635 CGGCCAGGATGAACCAAAAAG 60.068 52.381 2.24 0.00 39.69 2.27
5373 9721 1.276138 GGCCAGGATGAACCAAAAAGG 59.724 52.381 0.00 0.00 39.69 3.11
5386 9734 4.434713 CCAAAAAGGTTCATAACGAGGG 57.565 45.455 0.00 0.00 0.00 4.30
5387 9735 3.192633 CCAAAAAGGTTCATAACGAGGGG 59.807 47.826 0.00 0.00 0.00 4.79
5388 9736 2.124277 AAAGGTTCATAACGAGGGGC 57.876 50.000 0.00 0.00 0.00 5.80
5389 9737 0.988832 AAGGTTCATAACGAGGGGCA 59.011 50.000 0.00 0.00 0.00 5.36
5390 9738 0.252197 AGGTTCATAACGAGGGGCAC 59.748 55.000 0.00 0.00 0.00 5.01
5391 9739 1.087771 GGTTCATAACGAGGGGCACG 61.088 60.000 0.00 0.00 0.00 5.34
5392 9740 0.108520 GTTCATAACGAGGGGCACGA 60.109 55.000 0.00 0.00 34.70 4.35
5393 9741 0.828022 TTCATAACGAGGGGCACGAT 59.172 50.000 0.00 0.00 34.70 3.73
5394 9742 0.387929 TCATAACGAGGGGCACGATC 59.612 55.000 0.00 0.00 34.70 3.69
5395 9743 0.939577 CATAACGAGGGGCACGATCG 60.940 60.000 14.88 14.88 42.04 3.69
5397 9745 3.823330 ACGAGGGGCACGATCGTC 61.823 66.667 19.84 13.04 45.92 4.20
5398 9746 3.518998 CGAGGGGCACGATCGTCT 61.519 66.667 19.84 12.61 0.00 4.18
5399 9747 2.893398 GAGGGGCACGATCGTCTT 59.107 61.111 19.84 3.44 0.00 3.01
5400 9748 1.218316 GAGGGGCACGATCGTCTTT 59.782 57.895 19.84 2.22 0.00 2.52
5401 9749 1.079127 AGGGGCACGATCGTCTTTG 60.079 57.895 19.84 8.54 0.00 2.77
5402 9750 1.375523 GGGGCACGATCGTCTTTGT 60.376 57.895 19.84 0.00 0.00 2.83
5403 9751 0.953960 GGGGCACGATCGTCTTTGTT 60.954 55.000 19.84 0.00 0.00 2.83
5404 9752 0.165944 GGGCACGATCGTCTTTGTTG 59.834 55.000 19.84 6.52 0.00 3.33
5405 9753 0.452784 GGCACGATCGTCTTTGTTGC 60.453 55.000 19.84 16.47 0.00 4.17
5406 9754 0.452784 GCACGATCGTCTTTGTTGCC 60.453 55.000 19.84 0.00 0.00 4.52
5407 9755 0.165944 CACGATCGTCTTTGTTGCCC 59.834 55.000 19.84 0.00 0.00 5.36
5408 9756 0.953960 ACGATCGTCTTTGTTGCCCC 60.954 55.000 16.60 0.00 0.00 5.80
5409 9757 1.644786 CGATCGTCTTTGTTGCCCCC 61.645 60.000 7.03 0.00 0.00 5.40
5410 9758 1.644786 GATCGTCTTTGTTGCCCCCG 61.645 60.000 0.00 0.00 0.00 5.73
5411 9759 4.038080 CGTCTTTGTTGCCCCCGC 62.038 66.667 0.00 0.00 0.00 6.13
5412 9760 4.038080 GTCTTTGTTGCCCCCGCG 62.038 66.667 0.00 0.00 38.08 6.46
5413 9761 4.572571 TCTTTGTTGCCCCCGCGT 62.573 61.111 4.92 0.00 38.08 6.01
5414 9762 2.670251 CTTTGTTGCCCCCGCGTA 60.670 61.111 4.92 0.00 38.08 4.42
5415 9763 2.973316 CTTTGTTGCCCCCGCGTAC 61.973 63.158 4.92 0.00 38.08 3.67
5416 9764 3.769369 TTTGTTGCCCCCGCGTACA 62.769 57.895 4.92 0.00 38.08 2.90
5417 9765 4.690719 TGTTGCCCCCGCGTACAG 62.691 66.667 4.92 0.00 38.08 2.74
5427 9775 3.807538 GCGTACAGCCGTCGAGGA 61.808 66.667 6.70 0.00 45.00 3.71
5428 9776 2.403987 CGTACAGCCGTCGAGGAG 59.596 66.667 6.70 0.00 45.00 3.69
5429 9777 2.102553 GTACAGCCGTCGAGGAGC 59.897 66.667 6.70 8.46 45.00 4.70
5430 9778 3.138798 TACAGCCGTCGAGGAGCC 61.139 66.667 6.70 0.00 45.00 4.70
5437 9785 3.151022 GTCGAGGAGCCCTGGGAG 61.151 72.222 19.27 0.00 31.76 4.30
5438 9786 4.465446 TCGAGGAGCCCTGGGAGG 62.465 72.222 19.27 0.00 31.76 4.30
5457 9805 4.211502 CCGTACGGGCCCGGTTAG 62.212 72.222 44.99 31.15 44.69 2.34
5458 9806 3.140141 CGTACGGGCCCGGTTAGA 61.140 66.667 44.99 23.25 44.69 2.10
5459 9807 2.492773 CGTACGGGCCCGGTTAGAT 61.493 63.158 44.99 27.21 44.69 1.98
5460 9808 1.365267 GTACGGGCCCGGTTAGATC 59.635 63.158 44.99 22.90 44.69 2.75
5461 9809 2.195567 TACGGGCCCGGTTAGATCG 61.196 63.158 44.99 19.50 44.69 3.69
5462 9810 2.909457 TACGGGCCCGGTTAGATCGT 62.909 60.000 44.99 24.92 44.69 3.73
5463 9811 2.195567 CGGGCCCGGTTAGATCGTA 61.196 63.158 37.42 0.00 35.56 3.43
5464 9812 1.530013 CGGGCCCGGTTAGATCGTAT 61.530 60.000 37.42 0.00 35.56 3.06
5465 9813 0.037605 GGGCCCGGTTAGATCGTATG 60.038 60.000 5.69 0.00 0.00 2.39
5466 9814 0.669625 GGCCCGGTTAGATCGTATGC 60.670 60.000 0.00 0.00 0.00 3.14
5467 9815 0.669625 GCCCGGTTAGATCGTATGCC 60.670 60.000 0.00 0.00 0.00 4.40
5468 9816 0.037605 CCCGGTTAGATCGTATGCCC 60.038 60.000 0.00 0.00 0.00 5.36
5469 9817 0.388134 CCGGTTAGATCGTATGCCCG 60.388 60.000 0.00 0.00 0.00 6.13
5470 9818 0.594602 CGGTTAGATCGTATGCCCGA 59.405 55.000 0.00 0.00 41.73 5.14
5471 9819 1.665161 CGGTTAGATCGTATGCCCGAC 60.665 57.143 0.00 0.00 40.08 4.79
5472 9820 1.336609 GGTTAGATCGTATGCCCGACC 60.337 57.143 0.00 0.00 40.08 4.79
5473 9821 0.594602 TTAGATCGTATGCCCGACCG 59.405 55.000 0.00 0.00 40.08 4.79
5474 9822 0.535780 TAGATCGTATGCCCGACCGT 60.536 55.000 0.00 0.00 40.08 4.83
5475 9823 0.535780 AGATCGTATGCCCGACCGTA 60.536 55.000 0.00 0.00 40.08 4.02
5476 9824 0.524862 GATCGTATGCCCGACCGTAT 59.475 55.000 0.00 0.00 40.08 3.06
5477 9825 1.739466 GATCGTATGCCCGACCGTATA 59.261 52.381 0.00 0.00 40.08 1.47
5478 9826 0.874390 TCGTATGCCCGACCGTATAC 59.126 55.000 0.00 0.00 30.63 1.47
5479 9827 0.453282 CGTATGCCCGACCGTATACG 60.453 60.000 18.40 18.40 41.28 3.06
5480 9828 0.593128 GTATGCCCGACCGTATACGT 59.407 55.000 22.87 11.67 37.74 3.57
5481 9829 1.804151 GTATGCCCGACCGTATACGTA 59.196 52.381 22.87 0.00 37.74 3.57
5482 9830 1.538047 ATGCCCGACCGTATACGTAT 58.462 50.000 22.87 13.54 37.74 3.06
5483 9831 1.317613 TGCCCGACCGTATACGTATT 58.682 50.000 22.87 7.68 37.74 1.89
5484 9832 1.680735 TGCCCGACCGTATACGTATTT 59.319 47.619 22.87 5.19 37.74 1.40
5485 9833 2.053627 GCCCGACCGTATACGTATTTG 58.946 52.381 22.87 10.31 37.74 2.32
5486 9834 2.543653 GCCCGACCGTATACGTATTTGT 60.544 50.000 22.87 13.39 37.74 2.83
5487 9835 3.304391 GCCCGACCGTATACGTATTTGTA 60.304 47.826 22.87 0.00 37.74 2.41
5488 9836 4.615912 GCCCGACCGTATACGTATTTGTAT 60.616 45.833 22.87 0.00 38.54 2.29
5489 9837 5.391523 GCCCGACCGTATACGTATTTGTATA 60.392 44.000 22.87 0.00 36.48 1.47
5490 9838 6.677920 GCCCGACCGTATACGTATTTGTATAT 60.678 42.308 22.87 0.00 38.98 0.86
5491 9839 6.688385 CCCGACCGTATACGTATTTGTATATG 59.312 42.308 22.87 6.39 41.12 1.78
5495 9843 6.486657 CGTATACGTATTTGTATATGGCGG 57.513 41.667 17.16 0.00 39.22 6.13
5496 9844 5.052172 CGTATACGTATTTGTATATGGCGGC 60.052 44.000 17.16 0.00 39.22 6.53
5497 9845 3.114668 ACGTATTTGTATATGGCGGCA 57.885 42.857 16.34 16.34 0.00 5.69
5498 9846 3.670625 ACGTATTTGTATATGGCGGCAT 58.329 40.909 28.47 28.47 0.00 4.40
5499 9847 4.069304 ACGTATTTGTATATGGCGGCATT 58.931 39.130 30.54 18.83 0.00 3.56
5500 9848 4.517453 ACGTATTTGTATATGGCGGCATTT 59.483 37.500 30.54 23.81 0.00 2.32
5501 9849 5.086058 CGTATTTGTATATGGCGGCATTTC 58.914 41.667 30.54 19.20 0.00 2.17
5502 9850 3.617540 TTTGTATATGGCGGCATTTCG 57.382 42.857 30.54 0.00 0.00 3.46
5503 9851 2.248280 TGTATATGGCGGCATTTCGT 57.752 45.000 30.54 15.51 0.00 3.85
5504 9852 1.870402 TGTATATGGCGGCATTTCGTG 59.130 47.619 30.54 0.00 0.00 4.35
5512 9860 3.158813 GCATTTCGTGCGTGCGTG 61.159 61.111 1.25 0.00 45.23 5.34
5513 9861 2.499520 CATTTCGTGCGTGCGTGG 60.500 61.111 1.25 0.00 0.00 4.94
5514 9862 2.663520 ATTTCGTGCGTGCGTGGA 60.664 55.556 1.25 0.00 0.00 4.02
5515 9863 2.248135 ATTTCGTGCGTGCGTGGAA 61.248 52.632 1.25 0.00 0.00 3.53
5516 9864 2.438385 ATTTCGTGCGTGCGTGGAAC 62.438 55.000 1.25 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 232 8.868916 GTTCTCTCTCAAGACAATATTGTTCTC 58.131 37.037 21.63 9.77 42.43 2.87
229 233 7.821846 GGTTCTCTCTCAAGACAATATTGTTCT 59.178 37.037 21.63 16.14 42.43 3.01
230 234 7.604164 TGGTTCTCTCTCAAGACAATATTGTTC 59.396 37.037 21.63 14.36 42.43 3.18
231 235 7.453393 TGGTTCTCTCTCAAGACAATATTGTT 58.547 34.615 21.63 9.50 42.43 2.83
232 236 7.009179 TGGTTCTCTCTCAAGACAATATTGT 57.991 36.000 20.93 20.93 45.65 2.71
233 237 7.912056 TTGGTTCTCTCTCAAGACAATATTG 57.088 36.000 14.01 14.01 0.00 1.90
234 238 9.606631 GTATTGGTTCTCTCTCAAGACAATATT 57.393 33.333 0.00 0.00 33.19 1.28
235 239 8.986991 AGTATTGGTTCTCTCTCAAGACAATAT 58.013 33.333 0.00 0.00 35.74 1.28
236 240 8.367660 AGTATTGGTTCTCTCTCAAGACAATA 57.632 34.615 0.00 0.00 35.74 1.90
237 241 7.251321 AGTATTGGTTCTCTCTCAAGACAAT 57.749 36.000 0.00 0.00 35.74 2.71
238 242 6.672266 AGTATTGGTTCTCTCTCAAGACAA 57.328 37.500 0.00 0.00 35.74 3.18
239 243 6.672266 AAGTATTGGTTCTCTCTCAAGACA 57.328 37.500 0.00 0.00 35.74 3.41
240 244 6.128418 GCAAAGTATTGGTTCTCTCTCAAGAC 60.128 42.308 0.00 0.00 37.02 3.01
241 245 5.934625 GCAAAGTATTGGTTCTCTCTCAAGA 59.065 40.000 0.00 0.00 37.02 3.02
242 246 5.702670 TGCAAAGTATTGGTTCTCTCTCAAG 59.297 40.000 0.00 0.00 37.02 3.02
243 247 5.470098 GTGCAAAGTATTGGTTCTCTCTCAA 59.530 40.000 0.00 0.00 37.02 3.02
244 248 4.997395 GTGCAAAGTATTGGTTCTCTCTCA 59.003 41.667 0.00 0.00 37.02 3.27
278 282 2.027605 AGACAGTGACACGGTGCG 59.972 61.111 16.35 0.00 0.00 5.34
343 347 5.036916 AGGATAACTACTTTGATGACCCCA 58.963 41.667 0.00 0.00 0.00 4.96
347 351 6.253727 CACGACAGGATAACTACTTTGATGAC 59.746 42.308 0.00 0.00 0.00 3.06
348 352 6.071560 ACACGACAGGATAACTACTTTGATGA 60.072 38.462 0.00 0.00 0.00 2.92
349 353 6.035005 CACACGACAGGATAACTACTTTGATG 59.965 42.308 0.00 0.00 0.00 3.07
350 354 6.100004 CACACGACAGGATAACTACTTTGAT 58.900 40.000 0.00 0.00 0.00 2.57
351 355 5.466819 CACACGACAGGATAACTACTTTGA 58.533 41.667 0.00 0.00 0.00 2.69
352 356 4.625742 CCACACGACAGGATAACTACTTTG 59.374 45.833 0.00 0.00 0.00 2.77
353 357 4.817517 CCACACGACAGGATAACTACTTT 58.182 43.478 0.00 0.00 0.00 2.66
393 397 4.999950 ACTTATCAGTGAGGAGCTTGTTTG 59.000 41.667 0.00 0.00 0.00 2.93
430 434 6.963796 AGTTTTGACTGAGATTACTGCTTTG 58.036 36.000 0.00 0.00 0.00 2.77
433 437 5.406780 CGAAGTTTTGACTGAGATTACTGCT 59.593 40.000 0.00 0.00 0.00 4.24
434 438 5.389935 CCGAAGTTTTGACTGAGATTACTGC 60.390 44.000 0.00 0.00 0.00 4.40
435 439 5.696724 ACCGAAGTTTTGACTGAGATTACTG 59.303 40.000 0.00 0.00 0.00 2.74
437 441 5.694910 TGACCGAAGTTTTGACTGAGATTAC 59.305 40.000 0.00 0.00 0.00 1.89
438 442 5.849510 TGACCGAAGTTTTGACTGAGATTA 58.150 37.500 0.00 0.00 0.00 1.75
456 491 4.319177 AGAGAGAAAATGTTTCCTGACCG 58.681 43.478 0.00 0.00 0.00 4.79
469 504 5.184096 AGAGCACGTTCAGATAGAGAGAAAA 59.816 40.000 0.00 0.00 0.00 2.29
470 505 4.702612 AGAGCACGTTCAGATAGAGAGAAA 59.297 41.667 0.00 0.00 0.00 2.52
489 528 3.332919 TCTGAATTGACTGAAGCAGAGC 58.667 45.455 0.82 0.00 35.18 4.09
550 589 3.244875 TGGAAATCTAAACTCAGCCAGCA 60.245 43.478 0.00 0.00 0.00 4.41
556 595 7.118971 CCTTCTCTGTTGGAAATCTAAACTCAG 59.881 40.741 0.00 0.00 0.00 3.35
561 600 7.228706 GTGTTCCTTCTCTGTTGGAAATCTAAA 59.771 37.037 0.00 0.00 40.94 1.85
564 603 5.066593 GTGTTCCTTCTCTGTTGGAAATCT 58.933 41.667 0.00 0.00 40.94 2.40
565 604 4.821805 TGTGTTCCTTCTCTGTTGGAAATC 59.178 41.667 0.00 0.00 40.94 2.17
566 605 4.580580 GTGTGTTCCTTCTCTGTTGGAAAT 59.419 41.667 0.00 0.00 40.94 2.17
567 606 3.945285 GTGTGTTCCTTCTCTGTTGGAAA 59.055 43.478 0.00 0.00 40.94 3.13
568 607 3.054728 TGTGTGTTCCTTCTCTGTTGGAA 60.055 43.478 0.00 0.00 37.51 3.53
569 608 2.503765 TGTGTGTTCCTTCTCTGTTGGA 59.496 45.455 0.00 0.00 0.00 3.53
570 609 2.917933 TGTGTGTTCCTTCTCTGTTGG 58.082 47.619 0.00 0.00 0.00 3.77
571 610 3.185188 CGATGTGTGTTCCTTCTCTGTTG 59.815 47.826 0.00 0.00 0.00 3.33
573 612 2.289072 CCGATGTGTGTTCCTTCTCTGT 60.289 50.000 0.00 0.00 0.00 3.41
578 617 0.321653 AGGCCGATGTGTGTTCCTTC 60.322 55.000 0.00 0.00 0.00 3.46
594 634 1.508088 CTCGAATTGTTGGGCAGGC 59.492 57.895 0.00 0.00 0.00 4.85
682 729 2.183046 GTGAGGAGCCGCTGAGTC 59.817 66.667 0.00 0.00 0.00 3.36
690 737 2.583593 GCGATCGTGTGAGGAGCC 60.584 66.667 17.81 0.00 0.00 4.70
968 1050 0.609662 TCAACCGGGTTAGGTAGCAC 59.390 55.000 12.95 0.00 45.21 4.40
992 1074 2.414481 CTCTCAACGTCCATGCTTTCTG 59.586 50.000 0.00 0.00 0.00 3.02
1110 1192 5.692928 ACTTGATGTAGGTAGGAGTACGAT 58.307 41.667 0.00 0.00 0.00 3.73
1382 1473 2.052690 GCAGCCGAGGTAGGAGTCA 61.053 63.158 0.00 0.00 0.00 3.41
1450 1541 4.640771 TTGTGAGCAAGGAAAGGATAGT 57.359 40.909 0.00 0.00 0.00 2.12
1451 1542 5.435291 AGATTGTGAGCAAGGAAAGGATAG 58.565 41.667 0.00 0.00 38.10 2.08
1453 1544 4.313020 AGATTGTGAGCAAGGAAAGGAT 57.687 40.909 0.00 0.00 38.10 3.24
1456 1547 9.202273 GAGTATATAGATTGTGAGCAAGGAAAG 57.798 37.037 0.00 0.00 38.10 2.62
1457 1548 8.150945 GGAGTATATAGATTGTGAGCAAGGAAA 58.849 37.037 0.00 0.00 38.10 3.13
1459 1550 7.013220 AGGAGTATATAGATTGTGAGCAAGGA 58.987 38.462 0.00 0.00 38.10 3.36
1464 1555 9.238368 AGTTCTAGGAGTATATAGATTGTGAGC 57.762 37.037 0.00 0.00 0.00 4.26
1487 1578 5.075493 TCCTTCCTAGTCGAGTTTGTAGTT 58.925 41.667 0.00 0.00 0.00 2.24
1520 1611 2.203139 CCGTTGGTGGTCACTGCA 60.203 61.111 0.93 0.00 0.00 4.41
1522 1613 2.508928 ACCCGTTGGTGGTCACTG 59.491 61.111 0.93 0.00 45.58 3.66
1609 1890 1.056660 AACAGTCAATGGGTCGGTCT 58.943 50.000 0.00 0.00 0.00 3.85
1618 1899 6.196353 CCTTTACGTGAAAACAACAGTCAATG 59.804 38.462 0.00 0.00 0.00 2.82
1675 1956 1.686800 GCATGGTGATTGGGGCCTT 60.687 57.895 0.84 0.00 0.00 4.35
1676 1957 2.042639 GCATGGTGATTGGGGCCT 60.043 61.111 0.84 0.00 0.00 5.19
1813 2127 1.340211 TGGGACGTGTTGTTTTCAGGT 60.340 47.619 0.00 0.00 36.77 4.00
1827 2141 1.308998 AGCACAACTTTCTTGGGACG 58.691 50.000 0.00 0.00 0.00 4.79
1862 2176 6.170506 AGAGTGTCAACTGTCAAGTAAACAA 58.829 36.000 0.00 0.00 36.52 2.83
1864 2178 6.979238 ACTAGAGTGTCAACTGTCAAGTAAAC 59.021 38.462 0.00 0.00 36.52 2.01
1866 2180 6.710597 ACTAGAGTGTCAACTGTCAAGTAA 57.289 37.500 0.00 0.00 36.52 2.24
1867 2181 6.710597 AACTAGAGTGTCAACTGTCAAGTA 57.289 37.500 0.00 0.00 36.52 2.24
1868 2182 5.599999 AACTAGAGTGTCAACTGTCAAGT 57.400 39.130 0.00 0.00 36.52 3.16
1869 2183 6.809196 GGATAACTAGAGTGTCAACTGTCAAG 59.191 42.308 0.00 0.00 36.52 3.02
1870 2184 6.493802 AGGATAACTAGAGTGTCAACTGTCAA 59.506 38.462 0.00 0.00 36.52 3.18
1871 2185 6.010850 AGGATAACTAGAGTGTCAACTGTCA 58.989 40.000 0.00 0.00 36.52 3.58
1872 2186 6.518208 AGGATAACTAGAGTGTCAACTGTC 57.482 41.667 0.00 0.00 36.52 3.51
1887 2201 4.615513 AGACAGAAGTGCCTAGGATAACT 58.384 43.478 14.75 9.68 0.00 2.24
1888 2202 5.346181 AAGACAGAAGTGCCTAGGATAAC 57.654 43.478 14.75 7.29 0.00 1.89
1889 2203 6.374417 AAAAGACAGAAGTGCCTAGGATAA 57.626 37.500 14.75 0.00 0.00 1.75
1906 2220 9.678941 AAAAGCTGTATTTTGCTAGTAAAAGAC 57.321 29.630 26.90 26.90 40.37 3.01
1954 2268 8.972458 TCTTCGATTCCATGTTTCCATTAATA 57.028 30.769 0.00 0.00 0.00 0.98
1966 2287 5.376854 AGTTTGGTTTCTTCGATTCCATG 57.623 39.130 0.00 0.00 0.00 3.66
2011 2412 6.422701 CCATTGCAAAGCATATGTATTTCTGG 59.577 38.462 1.71 0.00 38.76 3.86
2013 2414 7.350744 TCCATTGCAAAGCATATGTATTTCT 57.649 32.000 1.71 0.00 38.76 2.52
2021 2422 9.754382 CTAGTAAAAATCCATTGCAAAGCATAT 57.246 29.630 1.71 0.00 38.76 1.78
2022 2423 8.748412 ACTAGTAAAAATCCATTGCAAAGCATA 58.252 29.630 1.71 0.00 38.76 3.14
2023 2424 7.614494 ACTAGTAAAAATCCATTGCAAAGCAT 58.386 30.769 1.71 0.00 38.76 3.79
2044 2448 6.574350 CCCTGAGGACAAAACATACTACTAG 58.426 44.000 0.00 0.00 33.47 2.57
2052 2456 2.158475 TGAAGCCCTGAGGACAAAACAT 60.158 45.455 0.00 0.00 33.47 2.71
2523 2945 4.435253 GCGTGTTCTGAGTTGATCATCAAG 60.435 45.833 0.00 3.89 37.00 3.02
2524 2946 3.433274 GCGTGTTCTGAGTTGATCATCAA 59.567 43.478 0.00 0.00 37.28 2.57
2526 2948 2.349886 GGCGTGTTCTGAGTTGATCATC 59.650 50.000 0.00 0.00 37.28 2.92
2528 2950 1.795768 GGCGTGTTCTGAGTTGATCA 58.204 50.000 0.00 0.00 36.21 2.92
2529 2951 0.716108 CGGCGTGTTCTGAGTTGATC 59.284 55.000 0.00 0.00 0.00 2.92
2531 2953 0.179094 AACGGCGTGTTCTGAGTTGA 60.179 50.000 15.70 0.00 35.27 3.18
2532 2954 2.307363 AACGGCGTGTTCTGAGTTG 58.693 52.632 15.70 0.00 35.27 3.16
2533 2955 4.848685 AACGGCGTGTTCTGAGTT 57.151 50.000 15.70 0.00 35.27 3.01
2540 2962 2.695359 ACATAATCAGAACGGCGTGTT 58.305 42.857 15.70 0.00 45.61 3.32
2541 2963 2.380084 ACATAATCAGAACGGCGTGT 57.620 45.000 15.70 3.46 0.00 4.49
2543 2965 3.795623 AGTACATAATCAGAACGGCGT 57.204 42.857 6.77 6.77 0.00 5.68
2544 2966 3.979495 GGTAGTACATAATCAGAACGGCG 59.021 47.826 4.80 4.80 0.00 6.46
2549 2971 6.183360 CCCGAGTTGGTAGTACATAATCAGAA 60.183 42.308 2.06 0.00 35.15 3.02
2550 2972 5.301045 CCCGAGTTGGTAGTACATAATCAGA 59.699 44.000 2.06 0.00 35.15 3.27
2551 2973 5.068723 ACCCGAGTTGGTAGTACATAATCAG 59.931 44.000 2.06 0.00 36.67 2.90
2553 2975 5.526506 ACCCGAGTTGGTAGTACATAATC 57.473 43.478 2.06 0.00 36.67 1.75
2555 2977 4.771577 TGAACCCGAGTTGGTAGTACATAA 59.228 41.667 2.06 0.00 37.76 1.90
2556 2978 4.158394 GTGAACCCGAGTTGGTAGTACATA 59.842 45.833 2.06 0.00 37.76 2.29
2560 2982 2.880443 AGTGAACCCGAGTTGGTAGTA 58.120 47.619 0.00 0.00 37.76 1.82
2561 2983 1.713297 AGTGAACCCGAGTTGGTAGT 58.287 50.000 0.00 0.00 37.76 2.73
2563 2985 2.040939 TGAAGTGAACCCGAGTTGGTA 58.959 47.619 0.00 0.00 37.76 3.25
2564 2986 0.834612 TGAAGTGAACCCGAGTTGGT 59.165 50.000 0.00 0.00 41.55 3.67
2565 2987 1.202651 AGTGAAGTGAACCCGAGTTGG 60.203 52.381 0.00 0.00 35.94 3.77
2668 3090 7.014702 CGCAAAGTTTGTCAGTTGAAATTTTT 58.985 30.769 16.70 0.00 0.00 1.94
2669 3091 6.533185 CGCAAAGTTTGTCAGTTGAAATTTT 58.467 32.000 16.70 0.00 0.00 1.82
2670 3092 5.445806 GCGCAAAGTTTGTCAGTTGAAATTT 60.446 36.000 16.70 0.00 0.00 1.82
2671 3093 4.032786 GCGCAAAGTTTGTCAGTTGAAATT 59.967 37.500 16.70 0.00 0.00 1.82
2673 3095 2.920490 GCGCAAAGTTTGTCAGTTGAAA 59.080 40.909 16.70 0.00 0.00 2.69
2676 3098 1.906757 TGCGCAAAGTTTGTCAGTTG 58.093 45.000 8.16 2.48 0.00 3.16
2677 3099 2.869233 ATGCGCAAAGTTTGTCAGTT 57.131 40.000 17.11 0.00 0.00 3.16
2802 3268 7.950684 AGTTCTTGGATATACTGCAGTATCCTA 59.049 37.037 36.39 28.86 44.33 2.94
2804 3270 6.998802 AGTTCTTGGATATACTGCAGTATCC 58.001 40.000 36.39 32.93 44.29 2.59
2820 3286 7.035004 TCATTTGTCTTGACAAAAGTTCTTGG 58.965 34.615 25.99 12.33 42.04 3.61
2833 3299 4.971939 TGTGACCAGATCATTTGTCTTGA 58.028 39.130 0.00 0.00 40.28 3.02
2850 3316 6.963083 ACTAGAGGGACATAGTTATGTGAC 57.037 41.667 9.38 3.02 46.20 3.67
2857 3323 7.073981 ACCATAGAGTACTAGAGGGACATAGTT 59.926 40.741 12.78 0.00 34.21 2.24
2863 3329 7.077050 TCTAACCATAGAGTACTAGAGGGAC 57.923 44.000 12.78 0.00 33.17 4.46
2890 3363 7.015389 AGTCTACCCACTATTTCAAGTATAGCC 59.985 40.741 0.00 0.00 0.00 3.93
2896 3369 7.793948 ACTAAGTCTACCCACTATTTCAAGT 57.206 36.000 0.00 0.00 0.00 3.16
2908 3381 5.320549 TGATGACGAAACTAAGTCTACCC 57.679 43.478 0.00 0.00 38.16 3.69
3014 3490 5.505654 CGGGGCAAGCAAATATGTAAACTAG 60.506 44.000 0.00 0.00 0.00 2.57
3133 3626 2.246397 CTGCGCACACAACTGACG 59.754 61.111 5.66 0.00 0.00 4.35
3141 3634 2.612219 AAAACCACAGCTGCGCACAC 62.612 55.000 15.27 0.59 0.00 3.82
3152 3648 0.257328 TCAGCAGGACCAAAACCACA 59.743 50.000 0.00 0.00 0.00 4.17
3155 3651 2.161609 CGTTATCAGCAGGACCAAAACC 59.838 50.000 0.00 0.00 0.00 3.27
3156 3652 3.071479 TCGTTATCAGCAGGACCAAAAC 58.929 45.455 0.00 0.00 0.00 2.43
3157 3653 3.071479 GTCGTTATCAGCAGGACCAAAA 58.929 45.455 0.00 0.00 0.00 2.44
3203 3699 0.308684 CAGCACACGTGACAGCAAAT 59.691 50.000 25.01 4.81 0.00 2.32
3205 3701 0.532640 ATCAGCACACGTGACAGCAA 60.533 50.000 25.01 14.56 0.00 3.91
3206 3702 1.069596 ATCAGCACACGTGACAGCA 59.930 52.632 25.01 8.53 0.00 4.41
3207 3703 1.224069 ACATCAGCACACGTGACAGC 61.224 55.000 25.01 21.52 0.00 4.40
3208 3704 0.509929 CACATCAGCACACGTGACAG 59.490 55.000 25.01 12.58 0.00 3.51
3209 3705 1.498043 GCACATCAGCACACGTGACA 61.498 55.000 25.01 0.60 0.00 3.58
3210 3706 1.205064 GCACATCAGCACACGTGAC 59.795 57.895 25.01 13.92 0.00 3.67
3244 3740 5.294306 TCATCTCGAACCAATGCTGAATAAC 59.706 40.000 0.00 0.00 0.00 1.89
3272 3768 4.341366 TCATTGTTTGCACAGAGAGAGA 57.659 40.909 0.00 0.00 33.22 3.10
3371 4415 2.274437 CTACTGACACGACGCCTACTA 58.726 52.381 0.00 0.00 0.00 1.82
3372 4416 1.085091 CTACTGACACGACGCCTACT 58.915 55.000 0.00 0.00 0.00 2.57
3373 4417 0.522915 GCTACTGACACGACGCCTAC 60.523 60.000 0.00 0.00 0.00 3.18
3375 4419 1.595993 ATGCTACTGACACGACGCCT 61.596 55.000 0.00 0.00 0.00 5.52
3376 4420 0.736325 AATGCTACTGACACGACGCC 60.736 55.000 0.00 0.00 0.00 5.68
3377 4421 1.068474 AAATGCTACTGACACGACGC 58.932 50.000 0.00 0.00 0.00 5.19
3378 4422 3.239254 TGTAAATGCTACTGACACGACG 58.761 45.455 0.00 0.00 0.00 5.12
3379 4423 4.862574 TGATGTAAATGCTACTGACACGAC 59.137 41.667 0.00 0.00 0.00 4.34
3380 4424 5.066968 TGATGTAAATGCTACTGACACGA 57.933 39.130 0.00 0.00 0.00 4.35
3385 4875 6.018751 GCGAAATCTGATGTAAATGCTACTGA 60.019 38.462 0.00 0.00 0.00 3.41
3388 4878 6.292389 AGCGAAATCTGATGTAAATGCTAC 57.708 37.500 0.00 0.00 0.00 3.58
3391 4881 7.357859 GCAAATAGCGAAATCTGATGTAAATGC 60.358 37.037 0.00 0.00 0.00 3.56
3418 4908 1.973515 ACAAGTCAGTCAGGATCAGCA 59.026 47.619 0.00 0.00 0.00 4.41
3432 4922 8.289618 TGCAGAATTTAGAATGTTACACAAGTC 58.710 33.333 0.00 0.00 0.00 3.01
3439 4929 7.145932 ACACCTGCAGAATTTAGAATGTTAC 57.854 36.000 17.39 0.00 0.00 2.50
3440 4930 7.360861 CGAACACCTGCAGAATTTAGAATGTTA 60.361 37.037 17.39 0.00 0.00 2.41
3441 4931 6.568462 CGAACACCTGCAGAATTTAGAATGTT 60.568 38.462 17.39 10.44 0.00 2.71
3442 4932 5.106555 CGAACACCTGCAGAATTTAGAATGT 60.107 40.000 17.39 0.00 0.00 2.71
3443 4933 5.106555 ACGAACACCTGCAGAATTTAGAATG 60.107 40.000 17.39 0.00 0.00 2.67
3444 4934 5.003804 ACGAACACCTGCAGAATTTAGAAT 58.996 37.500 17.39 0.00 0.00 2.40
3445 4935 4.385825 ACGAACACCTGCAGAATTTAGAA 58.614 39.130 17.39 0.00 0.00 2.10
3601 5459 2.233186 TCAGACAGAGCAATCTGGTCAG 59.767 50.000 9.85 3.05 46.52 3.51
3618 5476 1.040646 AGGACGCAGAACAACTCAGA 58.959 50.000 0.00 0.00 0.00 3.27
3621 5479 1.140816 GTCAGGACGCAGAACAACTC 58.859 55.000 0.00 0.00 0.00 3.01
3714 5859 2.742372 CTCCGGCTTCGTGTTGGG 60.742 66.667 0.00 0.00 0.00 4.12
3715 5860 1.738099 CTCTCCGGCTTCGTGTTGG 60.738 63.158 0.00 0.00 0.00 3.77
4169 6320 2.738147 GGTGAACATCTCCGACACG 58.262 57.895 0.00 0.00 33.08 4.49
4295 6446 3.533105 ACCGTCGTCACCAGCACA 61.533 61.111 0.00 0.00 0.00 4.57
4440 6594 0.036164 TTGTACCACCTTGCGCAGAT 59.964 50.000 11.31 0.00 0.00 2.90
4445 6599 1.148310 CAGAGTTGTACCACCTTGCG 58.852 55.000 0.00 0.00 0.00 4.85
4539 6693 3.550437 ATACAGGTTCAGTCTCCATGC 57.450 47.619 0.00 0.00 0.00 4.06
4710 6870 9.162764 TGAAATAAGTTTACTGAAGACTATGCC 57.837 33.333 0.00 0.00 0.00 4.40
4743 9074 2.168106 GCATATTTCCATGTTGGCCACA 59.832 45.455 3.88 7.85 40.71 4.17
4748 9079 5.279255 TCCATTGCATATTTCCATGTTGG 57.721 39.130 0.00 0.00 39.43 3.77
4804 9135 4.935205 TCCAGATGTGAATTAGACAAACGG 59.065 41.667 0.00 0.00 0.00 4.44
4805 9136 6.481134 CATCCAGATGTGAATTAGACAAACG 58.519 40.000 0.00 0.00 34.23 3.60
4833 9164 9.733556 TGGAAGCTTAGATGTAACATTCTTAAA 57.266 29.630 0.00 0.00 0.00 1.52
4834 9165 9.162764 GTGGAAGCTTAGATGTAACATTCTTAA 57.837 33.333 0.00 0.00 0.00 1.85
4835 9166 8.318412 TGTGGAAGCTTAGATGTAACATTCTTA 58.682 33.333 0.00 0.00 0.00 2.10
4836 9167 7.168219 TGTGGAAGCTTAGATGTAACATTCTT 58.832 34.615 0.00 0.00 0.00 2.52
4837 9168 6.711277 TGTGGAAGCTTAGATGTAACATTCT 58.289 36.000 0.00 0.00 0.00 2.40
4838 9169 6.985188 TGTGGAAGCTTAGATGTAACATTC 57.015 37.500 0.00 0.00 0.00 2.67
4839 9170 7.759489 TTTGTGGAAGCTTAGATGTAACATT 57.241 32.000 0.00 0.00 0.00 2.71
4840 9171 7.944729 ATTTGTGGAAGCTTAGATGTAACAT 57.055 32.000 0.00 0.00 0.00 2.71
4848 9179 9.791801 TGCATTATATATTTGTGGAAGCTTAGA 57.208 29.630 0.00 0.00 0.00 2.10
4850 9181 8.514594 GCTGCATTATATATTTGTGGAAGCTTA 58.485 33.333 0.00 0.00 0.00 3.09
4851 9182 7.014518 TGCTGCATTATATATTTGTGGAAGCTT 59.985 33.333 0.00 0.00 0.00 3.74
4852 9183 6.491062 TGCTGCATTATATATTTGTGGAAGCT 59.509 34.615 0.00 0.00 0.00 3.74
4853 9184 6.680810 TGCTGCATTATATATTTGTGGAAGC 58.319 36.000 0.00 0.00 0.00 3.86
4854 9185 8.136800 TGTTGCTGCATTATATATTTGTGGAAG 58.863 33.333 1.84 0.00 0.00 3.46
4855 9186 8.005192 TGTTGCTGCATTATATATTTGTGGAA 57.995 30.769 1.84 0.00 0.00 3.53
4856 9187 7.579761 TGTTGCTGCATTATATATTTGTGGA 57.420 32.000 1.84 0.00 0.00 4.02
4857 9188 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
4858 9189 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
4911 9242 2.225019 GCTGATGTCCACTCTGTTTGTG 59.775 50.000 0.00 0.00 35.39 3.33
4912 9243 2.105477 AGCTGATGTCCACTCTGTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
4913 9244 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
4914 9245 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
4915 9246 3.834813 TCTAAGCTGATGTCCACTCTGTT 59.165 43.478 0.00 0.00 0.00 3.16
4916 9247 3.435275 TCTAAGCTGATGTCCACTCTGT 58.565 45.455 0.00 0.00 0.00 3.41
4917 9248 4.370049 CATCTAAGCTGATGTCCACTCTG 58.630 47.826 5.99 0.00 39.05 3.35
4918 9249 4.669206 CATCTAAGCTGATGTCCACTCT 57.331 45.455 5.99 0.00 39.05 3.24
4956 9287 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
4957 9288 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
4958 9289 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
4959 9290 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
4960 9291 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
4961 9292 2.043115 TGGGTCTGTCTAGGACACATCT 59.957 50.000 0.00 0.00 41.46 2.90
4962 9293 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
4963 9294 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
4965 9296 2.180276 ACATGGGTCTGTCTAGGACAC 58.820 52.381 0.00 0.00 37.67 3.67
4966 9297 2.567169 CAACATGGGTCTGTCTAGGACA 59.433 50.000 0.00 0.43 40.50 4.02
4967 9298 2.832129 TCAACATGGGTCTGTCTAGGAC 59.168 50.000 0.00 0.00 0.00 3.85
4968 9299 3.184382 TCAACATGGGTCTGTCTAGGA 57.816 47.619 0.00 0.00 0.00 2.94
4969 9300 5.614324 TTATCAACATGGGTCTGTCTAGG 57.386 43.478 0.00 0.00 0.00 3.02
4970 9301 6.586344 ACATTATCAACATGGGTCTGTCTAG 58.414 40.000 0.00 0.00 0.00 2.43
4971 9302 6.560003 ACATTATCAACATGGGTCTGTCTA 57.440 37.500 0.00 0.00 0.00 2.59
4972 9303 5.441718 ACATTATCAACATGGGTCTGTCT 57.558 39.130 0.00 0.00 0.00 3.41
4973 9304 6.038271 GGTTACATTATCAACATGGGTCTGTC 59.962 42.308 0.00 0.00 0.00 3.51
4974 9305 5.885912 GGTTACATTATCAACATGGGTCTGT 59.114 40.000 0.00 0.00 0.00 3.41
4975 9306 5.007626 CGGTTACATTATCAACATGGGTCTG 59.992 44.000 0.00 0.00 0.00 3.51
4976 9307 5.123227 CGGTTACATTATCAACATGGGTCT 58.877 41.667 0.00 0.00 0.00 3.85
4977 9308 4.261031 GCGGTTACATTATCAACATGGGTC 60.261 45.833 0.00 0.00 0.00 4.46
4978 9309 3.630312 GCGGTTACATTATCAACATGGGT 59.370 43.478 0.00 0.00 0.00 4.51
4979 9310 3.004315 GGCGGTTACATTATCAACATGGG 59.996 47.826 0.00 0.00 0.00 4.00
4980 9311 3.303725 CGGCGGTTACATTATCAACATGG 60.304 47.826 0.00 0.00 0.00 3.66
4981 9312 3.558006 TCGGCGGTTACATTATCAACATG 59.442 43.478 7.21 0.00 0.00 3.21
4982 9313 3.799366 TCGGCGGTTACATTATCAACAT 58.201 40.909 7.21 0.00 0.00 2.71
4983 9314 3.191669 CTCGGCGGTTACATTATCAACA 58.808 45.455 7.21 0.00 0.00 3.33
4984 9315 2.033151 GCTCGGCGGTTACATTATCAAC 60.033 50.000 7.21 0.00 0.00 3.18
4985 9316 2.206750 GCTCGGCGGTTACATTATCAA 58.793 47.619 7.21 0.00 0.00 2.57
4986 9317 1.137282 TGCTCGGCGGTTACATTATCA 59.863 47.619 7.21 0.00 0.00 2.15
4987 9318 1.525619 GTGCTCGGCGGTTACATTATC 59.474 52.381 7.21 0.00 0.00 1.75
4988 9319 1.134640 TGTGCTCGGCGGTTACATTAT 60.135 47.619 7.21 0.00 0.00 1.28
4989 9320 0.246910 TGTGCTCGGCGGTTACATTA 59.753 50.000 7.21 0.00 0.00 1.90
4990 9321 0.604243 TTGTGCTCGGCGGTTACATT 60.604 50.000 7.21 0.00 0.00 2.71
4991 9322 0.604243 TTTGTGCTCGGCGGTTACAT 60.604 50.000 7.21 0.00 0.00 2.29
4992 9323 1.227586 TTTGTGCTCGGCGGTTACA 60.228 52.632 7.21 7.00 0.00 2.41
4993 9324 1.205820 GTTTGTGCTCGGCGGTTAC 59.794 57.895 7.21 4.16 0.00 2.50
4994 9325 1.962306 GGTTTGTGCTCGGCGGTTA 60.962 57.895 7.21 0.00 0.00 2.85
4995 9326 3.284449 GGTTTGTGCTCGGCGGTT 61.284 61.111 7.21 0.00 0.00 4.44
4996 9327 4.250305 AGGTTTGTGCTCGGCGGT 62.250 61.111 7.21 0.00 0.00 5.68
4997 9328 3.423154 GAGGTTTGTGCTCGGCGG 61.423 66.667 7.21 0.00 0.00 6.13
4998 9329 3.423154 GGAGGTTTGTGCTCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
5070 9401 5.307976 TGAACTGCTTGGCTATGATAGGTAT 59.692 40.000 1.11 0.00 0.00 2.73
5074 9405 5.530171 ACATTGAACTGCTTGGCTATGATAG 59.470 40.000 0.00 0.00 0.00 2.08
5127 9464 8.624367 AGTAGTACTTATCGAGCATAGTGAAT 57.376 34.615 0.00 0.00 0.00 2.57
5148 9485 4.358494 ACTTCGTAACTGCTGCTAGTAG 57.642 45.455 3.05 3.05 33.91 2.57
5154 9491 1.871039 TGGAAACTTCGTAACTGCTGC 59.129 47.619 0.00 0.00 0.00 5.25
5155 9492 2.480419 CCTGGAAACTTCGTAACTGCTG 59.520 50.000 0.00 0.00 0.00 4.41
5297 9645 2.357517 AGCACCGGAGCAGAAACG 60.358 61.111 26.04 0.00 36.85 3.60
5298 9646 2.035442 GGAGCACCGGAGCAGAAAC 61.035 63.158 26.04 10.79 36.85 2.78
5299 9647 2.347490 GGAGCACCGGAGCAGAAA 59.653 61.111 26.04 0.00 36.85 2.52
5300 9648 3.706373 GGGAGCACCGGAGCAGAA 61.706 66.667 26.04 0.00 36.85 3.02
5320 9668 3.114616 CACCTCGCGTTCAGCCAG 61.115 66.667 5.77 0.00 44.76 4.85
5321 9669 4.680237 CCACCTCGCGTTCAGCCA 62.680 66.667 5.77 0.00 44.76 4.75
5322 9670 3.876589 TTCCACCTCGCGTTCAGCC 62.877 63.158 5.77 0.00 44.76 4.85
5323 9671 1.503818 TTTTCCACCTCGCGTTCAGC 61.504 55.000 5.77 0.00 43.95 4.26
5324 9672 0.941542 TTTTTCCACCTCGCGTTCAG 59.058 50.000 5.77 0.00 0.00 3.02
5325 9673 0.658897 GTTTTTCCACCTCGCGTTCA 59.341 50.000 5.77 0.00 0.00 3.18
5326 9674 0.658897 TGTTTTTCCACCTCGCGTTC 59.341 50.000 5.77 0.00 0.00 3.95
5327 9675 0.379316 GTGTTTTTCCACCTCGCGTT 59.621 50.000 5.77 0.00 0.00 4.84
5328 9676 0.745128 TGTGTTTTTCCACCTCGCGT 60.745 50.000 5.77 0.00 34.35 6.01
5329 9677 0.591170 ATGTGTTTTTCCACCTCGCG 59.409 50.000 0.00 0.00 34.35 5.87
5330 9678 1.399727 CGATGTGTTTTTCCACCTCGC 60.400 52.381 6.16 0.00 43.12 5.03
5331 9679 2.594529 CGATGTGTTTTTCCACCTCG 57.405 50.000 4.99 4.99 43.45 4.63
5332 9680 2.096417 CGTCGATGTGTTTTTCCACCTC 60.096 50.000 0.00 0.00 34.35 3.85
5333 9681 1.871039 CGTCGATGTGTTTTTCCACCT 59.129 47.619 0.00 0.00 34.35 4.00
5334 9682 1.069500 CCGTCGATGTGTTTTTCCACC 60.069 52.381 3.52 0.00 34.35 4.61
5335 9683 1.662026 GCCGTCGATGTGTTTTTCCAC 60.662 52.381 3.52 0.00 35.86 4.02
5336 9684 0.589223 GCCGTCGATGTGTTTTTCCA 59.411 50.000 3.52 0.00 0.00 3.53
5337 9685 0.109919 GGCCGTCGATGTGTTTTTCC 60.110 55.000 3.52 0.00 0.00 3.13
5338 9686 0.589223 TGGCCGTCGATGTGTTTTTC 59.411 50.000 3.52 0.00 0.00 2.29
5339 9687 0.591170 CTGGCCGTCGATGTGTTTTT 59.409 50.000 3.52 0.00 0.00 1.94
5340 9688 1.234615 CCTGGCCGTCGATGTGTTTT 61.235 55.000 3.52 0.00 0.00 2.43
5341 9689 1.671054 CCTGGCCGTCGATGTGTTT 60.671 57.895 3.52 0.00 0.00 2.83
5342 9690 1.899437 ATCCTGGCCGTCGATGTGTT 61.899 55.000 3.52 0.00 0.00 3.32
5343 9691 2.359169 ATCCTGGCCGTCGATGTGT 61.359 57.895 3.52 0.00 0.00 3.72
5344 9692 1.884464 CATCCTGGCCGTCGATGTG 60.884 63.158 15.11 0.00 30.86 3.21
5345 9693 1.613317 TTCATCCTGGCCGTCGATGT 61.613 55.000 20.04 0.00 35.83 3.06
5346 9694 1.143838 TTCATCCTGGCCGTCGATG 59.856 57.895 16.56 16.56 35.71 3.84
5347 9695 1.144057 GTTCATCCTGGCCGTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
5348 9696 2.577059 GTTCATCCTGGCCGTCGA 59.423 61.111 0.00 0.00 0.00 4.20
5349 9697 2.511600 GGTTCATCCTGGCCGTCG 60.512 66.667 0.00 0.00 0.00 5.12
5350 9698 0.608035 TTTGGTTCATCCTGGCCGTC 60.608 55.000 0.00 0.00 37.07 4.79
5351 9699 0.178975 TTTTGGTTCATCCTGGCCGT 60.179 50.000 0.00 0.00 37.07 5.68
5352 9700 0.965439 TTTTTGGTTCATCCTGGCCG 59.035 50.000 0.00 0.00 37.07 6.13
5353 9701 1.276138 CCTTTTTGGTTCATCCTGGCC 59.724 52.381 0.00 0.00 37.07 5.36
5354 9702 2.749280 CCTTTTTGGTTCATCCTGGC 57.251 50.000 0.00 0.00 37.07 4.85
5365 9713 3.192633 CCCCTCGTTATGAACCTTTTTGG 59.807 47.826 0.00 0.00 42.93 3.28
5366 9714 3.366985 GCCCCTCGTTATGAACCTTTTTG 60.367 47.826 0.00 0.00 0.00 2.44
5367 9715 2.823747 GCCCCTCGTTATGAACCTTTTT 59.176 45.455 0.00 0.00 0.00 1.94
5368 9716 2.224917 TGCCCCTCGTTATGAACCTTTT 60.225 45.455 0.00 0.00 0.00 2.27
5369 9717 1.353022 TGCCCCTCGTTATGAACCTTT 59.647 47.619 0.00 0.00 0.00 3.11
5370 9718 0.988832 TGCCCCTCGTTATGAACCTT 59.011 50.000 0.00 0.00 0.00 3.50
5371 9719 0.252197 GTGCCCCTCGTTATGAACCT 59.748 55.000 0.00 0.00 0.00 3.50
5372 9720 1.087771 CGTGCCCCTCGTTATGAACC 61.088 60.000 0.00 0.00 0.00 3.62
5373 9721 0.108520 TCGTGCCCCTCGTTATGAAC 60.109 55.000 0.00 0.00 0.00 3.18
5374 9722 0.828022 ATCGTGCCCCTCGTTATGAA 59.172 50.000 0.00 0.00 0.00 2.57
5375 9723 0.387929 GATCGTGCCCCTCGTTATGA 59.612 55.000 0.00 0.00 0.00 2.15
5376 9724 0.939577 CGATCGTGCCCCTCGTTATG 60.940 60.000 7.03 0.00 0.00 1.90
5377 9725 1.362717 CGATCGTGCCCCTCGTTAT 59.637 57.895 7.03 0.00 0.00 1.89
5378 9726 1.996786 GACGATCGTGCCCCTCGTTA 61.997 60.000 28.12 0.00 44.89 3.18
5379 9727 3.352338 GACGATCGTGCCCCTCGTT 62.352 63.158 28.12 0.00 44.89 3.85
5381 9729 2.558554 AAAGACGATCGTGCCCCTCG 62.559 60.000 28.12 0.00 38.34 4.63
5382 9730 1.084370 CAAAGACGATCGTGCCCCTC 61.084 60.000 28.12 10.05 0.00 4.30
5383 9731 1.079127 CAAAGACGATCGTGCCCCT 60.079 57.895 28.12 13.68 0.00 4.79
5384 9732 0.953960 AACAAAGACGATCGTGCCCC 60.954 55.000 28.12 11.29 0.00 5.80
5385 9733 0.165944 CAACAAAGACGATCGTGCCC 59.834 55.000 28.12 11.69 0.00 5.36
5386 9734 0.452784 GCAACAAAGACGATCGTGCC 60.453 55.000 28.12 12.52 0.00 5.01
5387 9735 0.452784 GGCAACAAAGACGATCGTGC 60.453 55.000 28.12 19.94 0.00 5.34
5388 9736 0.165944 GGGCAACAAAGACGATCGTG 59.834 55.000 28.12 13.87 39.74 4.35
5389 9737 0.953960 GGGGCAACAAAGACGATCGT 60.954 55.000 22.97 22.97 39.74 3.73
5390 9738 1.644786 GGGGGCAACAAAGACGATCG 61.645 60.000 14.88 14.88 39.74 3.69
5391 9739 1.644786 CGGGGGCAACAAAGACGATC 61.645 60.000 0.00 0.00 39.74 3.69
5392 9740 1.674322 CGGGGGCAACAAAGACGAT 60.674 57.895 0.00 0.00 39.74 3.73
5393 9741 2.281208 CGGGGGCAACAAAGACGA 60.281 61.111 0.00 0.00 39.74 4.20
5394 9742 4.038080 GCGGGGGCAACAAAGACG 62.038 66.667 0.00 0.00 39.74 4.18
5395 9743 4.038080 CGCGGGGGCAACAAAGAC 62.038 66.667 0.00 0.00 39.74 3.01
5396 9744 3.179888 TACGCGGGGGCAACAAAGA 62.180 57.895 12.47 0.00 39.74 2.52
5397 9745 2.670251 TACGCGGGGGCAACAAAG 60.670 61.111 12.47 0.00 39.74 2.77
5398 9746 2.979120 GTACGCGGGGGCAACAAA 60.979 61.111 12.47 0.00 39.74 2.83
5399 9747 4.251771 TGTACGCGGGGGCAACAA 62.252 61.111 12.47 0.00 39.74 2.83
5400 9748 4.690719 CTGTACGCGGGGGCAACA 62.691 66.667 12.47 3.84 39.74 3.33
5410 9758 3.736482 CTCCTCGACGGCTGTACGC 62.736 68.421 0.00 1.72 37.37 4.42
5411 9759 2.403987 CTCCTCGACGGCTGTACG 59.596 66.667 0.00 4.59 40.31 3.67
5412 9760 2.102553 GCTCCTCGACGGCTGTAC 59.897 66.667 0.00 0.00 0.00 2.90
5413 9761 3.138798 GGCTCCTCGACGGCTGTA 61.139 66.667 0.00 0.00 0.00 2.74
5420 9768 3.151022 CTCCCAGGGCTCCTCGAC 61.151 72.222 0.00 0.00 0.00 4.20
5421 9769 4.465446 CCTCCCAGGGCTCCTCGA 62.465 72.222 0.00 0.00 0.00 4.04
5441 9789 2.412037 GATCTAACCGGGCCCGTACG 62.412 65.000 40.52 28.35 37.81 3.67
5442 9790 1.365267 GATCTAACCGGGCCCGTAC 59.635 63.158 40.52 19.54 37.81 3.67
5443 9791 2.195567 CGATCTAACCGGGCCCGTA 61.196 63.158 40.52 26.69 37.81 4.02
5444 9792 2.909457 TACGATCTAACCGGGCCCGT 62.909 60.000 40.52 27.05 37.81 5.28
5445 9793 1.530013 ATACGATCTAACCGGGCCCG 61.530 60.000 37.99 37.99 39.44 6.13
5446 9794 0.037605 CATACGATCTAACCGGGCCC 60.038 60.000 13.57 13.57 0.00 5.80
5447 9795 0.669625 GCATACGATCTAACCGGGCC 60.670 60.000 6.32 0.00 0.00 5.80
5448 9796 0.669625 GGCATACGATCTAACCGGGC 60.670 60.000 6.32 0.00 0.00 6.13
5449 9797 0.037605 GGGCATACGATCTAACCGGG 60.038 60.000 6.32 0.00 0.00 5.73
5450 9798 0.388134 CGGGCATACGATCTAACCGG 60.388 60.000 0.00 0.00 36.45 5.28
5451 9799 0.594602 TCGGGCATACGATCTAACCG 59.405 55.000 0.00 0.00 38.06 4.44
5452 9800 1.336609 GGTCGGGCATACGATCTAACC 60.337 57.143 0.00 0.00 45.47 2.85
5453 9801 1.665161 CGGTCGGGCATACGATCTAAC 60.665 57.143 6.43 0.00 45.47 2.34
5454 9802 0.594602 CGGTCGGGCATACGATCTAA 59.405 55.000 6.43 0.00 45.47 2.10
5455 9803 0.535780 ACGGTCGGGCATACGATCTA 60.536 55.000 6.43 0.00 45.47 1.98
5456 9804 0.535780 TACGGTCGGGCATACGATCT 60.536 55.000 6.43 0.00 45.47 2.75
5457 9805 0.524862 ATACGGTCGGGCATACGATC 59.475 55.000 0.00 0.00 45.47 3.69
5458 9806 1.470098 GTATACGGTCGGGCATACGAT 59.530 52.381 0.00 0.00 45.47 3.73
5459 9807 0.874390 GTATACGGTCGGGCATACGA 59.126 55.000 0.00 0.00 41.13 3.43
5460 9808 0.453282 CGTATACGGTCGGGCATACG 60.453 60.000 17.61 14.69 39.93 3.06
5461 9809 0.593128 ACGTATACGGTCGGGCATAC 59.407 55.000 27.62 0.00 44.95 2.39
5462 9810 2.177394 TACGTATACGGTCGGGCATA 57.823 50.000 27.62 7.01 44.95 3.14
5463 9811 1.538047 ATACGTATACGGTCGGGCAT 58.462 50.000 27.62 7.99 44.95 4.40
5464 9812 1.317613 AATACGTATACGGTCGGGCA 58.682 50.000 27.62 5.59 44.95 5.36
5465 9813 2.053627 CAAATACGTATACGGTCGGGC 58.946 52.381 27.62 0.00 44.95 6.13
5466 9814 3.354089 ACAAATACGTATACGGTCGGG 57.646 47.619 27.62 16.31 44.95 5.14
5467 9815 6.688385 CCATATACAAATACGTATACGGTCGG 59.312 42.308 27.62 15.35 44.95 4.79
5468 9816 6.195244 GCCATATACAAATACGTATACGGTCG 59.805 42.308 27.62 13.90 39.04 4.79
5469 9817 6.195244 CGCCATATACAAATACGTATACGGTC 59.805 42.308 27.62 3.61 39.04 4.79
5470 9818 6.029607 CGCCATATACAAATACGTATACGGT 58.970 40.000 27.62 17.54 39.04 4.83
5471 9819 5.456497 CCGCCATATACAAATACGTATACGG 59.544 44.000 27.62 12.80 39.56 4.02
5472 9820 5.052172 GCCGCCATATACAAATACGTATACG 60.052 44.000 23.24 23.24 46.33 3.06
5473 9821 5.806502 TGCCGCCATATACAAATACGTATAC 59.193 40.000 8.83 0.00 37.20 1.47
5474 9822 5.963594 TGCCGCCATATACAAATACGTATA 58.036 37.500 8.83 0.00 38.39 1.47
5475 9823 4.823157 TGCCGCCATATACAAATACGTAT 58.177 39.130 1.14 1.14 36.13 3.06
5476 9824 4.254402 TGCCGCCATATACAAATACGTA 57.746 40.909 0.00 0.00 0.00 3.57
5477 9825 3.114668 TGCCGCCATATACAAATACGT 57.885 42.857 0.00 0.00 0.00 3.57
5478 9826 4.678509 AATGCCGCCATATACAAATACG 57.321 40.909 0.00 0.00 0.00 3.06
5479 9827 5.086058 CGAAATGCCGCCATATACAAATAC 58.914 41.667 0.00 0.00 0.00 1.89
5480 9828 4.757657 ACGAAATGCCGCCATATACAAATA 59.242 37.500 0.00 0.00 0.00 1.40
5481 9829 3.568007 ACGAAATGCCGCCATATACAAAT 59.432 39.130 0.00 0.00 0.00 2.32
5482 9830 2.946329 ACGAAATGCCGCCATATACAAA 59.054 40.909 0.00 0.00 0.00 2.83
5483 9831 2.289274 CACGAAATGCCGCCATATACAA 59.711 45.455 0.00 0.00 0.00 2.41
5484 9832 1.870402 CACGAAATGCCGCCATATACA 59.130 47.619 0.00 0.00 0.00 2.29
5485 9833 2.594529 CACGAAATGCCGCCATATAC 57.405 50.000 0.00 0.00 0.00 1.47
5496 9844 2.436997 TTCCACGCACGCACGAAATG 62.437 55.000 4.54 0.00 36.70 2.32
5497 9845 2.248135 TTCCACGCACGCACGAAAT 61.248 52.632 4.54 0.00 36.70 2.17
5498 9846 2.890961 TTCCACGCACGCACGAAA 60.891 55.556 4.54 0.00 36.70 3.46
5499 9847 3.632107 GTTCCACGCACGCACGAA 61.632 61.111 4.54 0.00 36.70 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.