Multiple sequence alignment - TraesCS2D01G307200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G307200 chr2D 100.000 3679 0 0 1 3679 394052149 394048471 0.000000e+00 6794.0
1 TraesCS2D01G307200 chr2D 94.253 87 5 0 3538 3624 298698892 298698978 2.300000e-27 134.0
2 TraesCS2D01G307200 chr2B 92.804 2140 112 13 1081 3208 465655114 465653005 0.000000e+00 3061.0
3 TraesCS2D01G307200 chr2B 85.290 639 71 16 456 1085 465656057 465655433 4.010000e-179 638.0
4 TraesCS2D01G307200 chr2B 87.174 460 41 8 3224 3679 465653017 465652572 1.180000e-139 507.0
5 TraesCS2D01G307200 chr6D 85.831 367 38 12 72 431 316102306 316101947 9.640000e-101 377.0
6 TraesCS2D01G307200 chr6D 87.129 101 10 2 3535 3632 382702864 382702964 1.080000e-20 111.0
7 TraesCS2D01G307200 chr1D 85.014 367 41 12 72 431 58567767 58568126 9.710000e-96 361.0
8 TraesCS2D01G307200 chr1D 80.000 290 39 14 521 796 416141601 416141317 2.900000e-46 196.0
9 TraesCS2D01G307200 chr1D 87.234 94 12 0 3532 3625 252473236 252473143 1.400000e-19 108.0
10 TraesCS2D01G307200 chr5B 84.890 364 44 7 72 431 333252731 333253087 1.260000e-94 357.0
11 TraesCS2D01G307200 chr5D 84.848 363 44 8 73 431 404471005 404470650 4.520000e-94 355.0
12 TraesCS2D01G307200 chr5D 80.709 254 36 7 505 749 10033172 10032923 6.270000e-43 185.0
13 TraesCS2D01G307200 chr5D 80.709 254 36 7 505 749 10034811 10034562 6.270000e-43 185.0
14 TraesCS2D01G307200 chr5D 78.571 126 16 4 509 623 482005497 482005372 5.100000e-09 73.1
15 TraesCS2D01G307200 chr3D 83.056 360 42 12 72 427 548716494 548716150 3.570000e-80 309.0
16 TraesCS2D01G307200 chr3D 90.909 88 8 0 3538 3625 329496866 329496953 6.450000e-23 119.0
17 TraesCS2D01G307200 chr3D 84.259 108 10 7 3538 3641 309688759 309688655 8.410000e-17 99.0
18 TraesCS2D01G307200 chr3D 100.000 34 0 0 39 72 548716556 548716523 3.070000e-06 63.9
19 TraesCS2D01G307200 chr7D 82.337 368 46 14 73 432 631956300 631955944 5.970000e-78 302.0
20 TraesCS2D01G307200 chr7D 83.197 244 26 6 509 737 16909405 16909648 3.720000e-50 209.0
21 TraesCS2D01G307200 chr7D 79.457 258 44 6 132 386 388908569 388908820 1.360000e-39 174.0
22 TraesCS2D01G307200 chr7D 86.290 124 16 1 131 253 153131982 153132105 2.300000e-27 134.0
23 TraesCS2D01G307200 chr7D 100.000 34 0 0 39 72 582057972 582057939 3.070000e-06 63.9
24 TraesCS2D01G307200 chr7D 94.872 39 1 1 34 72 631956367 631956330 3.970000e-05 60.2
25 TraesCS2D01G307200 chr4D 82.016 367 53 9 74 435 23075207 23074849 2.150000e-77 300.0
26 TraesCS2D01G307200 chr4D 88.764 89 10 0 3534 3622 464801059 464800971 3.880000e-20 110.0
27 TraesCS2D01G307200 chr1B 82.258 372 41 16 72 434 38888526 38888171 7.720000e-77 298.0
28 TraesCS2D01G307200 chr1B 80.973 226 34 8 508 728 497823326 497823547 1.760000e-38 171.0
29 TraesCS2D01G307200 chr5A 82.162 370 42 17 72 431 579919039 579918684 2.780000e-76 296.0
30 TraesCS2D01G307200 chr7B 81.270 315 45 13 128 431 613257631 613257320 3.670000e-60 243.0
31 TraesCS2D01G307200 chr7B 80.579 242 32 8 508 738 591119202 591118965 4.880000e-39 172.0
32 TraesCS2D01G307200 chr7B 80.498 241 29 9 509 738 591205528 591205295 6.320000e-38 169.0
33 TraesCS2D01G307200 chr7B 87.629 97 11 1 3529 3625 324888867 324888962 1.080000e-20 111.0
34 TraesCS2D01G307200 chr7B 85.714 98 13 1 3525 3622 232259600 232259696 6.500000e-18 102.0
35 TraesCS2D01G307200 chr7B 94.872 39 1 1 34 72 115203430 115203467 3.970000e-05 60.2
36 TraesCS2D01G307200 chr6A 84.937 239 28 7 157 392 46695429 46695662 6.140000e-58 235.0
37 TraesCS2D01G307200 chr6A 83.838 198 27 4 535 728 121662501 121662697 2.260000e-42 183.0
38 TraesCS2D01G307200 chr3B 84.492 187 26 3 544 728 813745919 813745734 8.120000e-42 182.0
39 TraesCS2D01G307200 chr3B 85.065 154 20 2 124 276 526735467 526735316 1.770000e-33 154.0
40 TraesCS2D01G307200 chr3A 83.838 198 25 7 535 728 515729962 515730156 8.120000e-42 182.0
41 TraesCS2D01G307200 chr3A 83.333 126 10 4 501 615 593174944 593174819 5.020000e-19 106.0
42 TraesCS2D01G307200 chr7A 84.906 106 14 2 3525 3629 63332476 63332372 5.020000e-19 106.0
43 TraesCS2D01G307200 chr7A 100.000 29 0 0 432 460 446084636 446084608 2.000000e-03 54.7
44 TraesCS2D01G307200 chr2A 80.672 119 14 6 701 815 385698419 385698532 2.350000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G307200 chr2D 394048471 394052149 3678 True 6794 6794 100.000000 1 3679 1 chr2D.!!$R1 3678
1 TraesCS2D01G307200 chr2B 465652572 465656057 3485 True 1402 3061 88.422667 456 3679 3 chr2B.!!$R1 3223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 576 0.040157 ATGAACGCATGCACACACAC 60.040 50.0 19.57 2.06 32.31 3.82 F
610 613 0.098025 CTTCGAGAGACTGAGTCGGC 59.902 60.0 6.99 3.72 41.84 5.54 F
2083 2416 0.109781 GTAACCTGTGCAATGTGCCG 60.110 55.0 0.00 0.00 44.23 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2210 0.102120 GGATCACCAGAGAGACTGCG 59.898 60.0 0.00 0.0 44.52 5.18 R
2105 2438 0.248621 GCAAGGCATACCATTGCGTC 60.249 55.0 4.15 0.0 43.71 5.19 R
2907 3251 0.460109 CACAACGAGGATCATGGCGA 60.460 55.0 0.00 0.0 33.17 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.671251 ATCGTAGTAGGAGCAGCAGC 59.329 55.000 0.00 0.00 42.56 5.25
21 22 0.679960 TCGTAGTAGGAGCAGCAGCA 60.680 55.000 3.17 0.00 45.49 4.41
22 23 0.248825 CGTAGTAGGAGCAGCAGCAG 60.249 60.000 3.17 0.00 45.49 4.24
23 24 0.529555 GTAGTAGGAGCAGCAGCAGC 60.530 60.000 3.17 0.46 45.49 5.25
24 25 0.972471 TAGTAGGAGCAGCAGCAGCA 60.972 55.000 12.92 0.00 45.49 4.41
25 26 1.376424 GTAGGAGCAGCAGCAGCAA 60.376 57.895 12.92 0.00 45.49 3.91
26 27 1.376424 TAGGAGCAGCAGCAGCAAC 60.376 57.895 12.92 4.13 45.49 4.17
27 28 2.115734 TAGGAGCAGCAGCAGCAACA 62.116 55.000 12.92 0.00 45.49 3.33
28 29 2.558286 GGAGCAGCAGCAGCAACAA 61.558 57.895 12.92 0.00 45.49 2.83
29 30 1.371389 GAGCAGCAGCAGCAACAAC 60.371 57.895 12.92 0.00 45.49 3.32
30 31 2.067091 GAGCAGCAGCAGCAACAACA 62.067 55.000 12.92 0.00 45.49 3.33
31 32 1.227031 GCAGCAGCAGCAACAACAA 60.227 52.632 4.63 0.00 45.49 2.83
32 33 1.485032 GCAGCAGCAGCAACAACAAC 61.485 55.000 4.63 0.00 45.49 3.32
33 34 0.179132 CAGCAGCAGCAACAACAACA 60.179 50.000 3.17 0.00 45.49 3.33
34 35 0.531657 AGCAGCAGCAACAACAACAA 59.468 45.000 3.17 0.00 45.49 2.83
35 36 0.646895 GCAGCAGCAACAACAACAAC 59.353 50.000 0.00 0.00 41.58 3.32
36 37 1.993542 CAGCAGCAACAACAACAACA 58.006 45.000 0.00 0.00 0.00 3.33
37 38 2.335752 CAGCAGCAACAACAACAACAA 58.664 42.857 0.00 0.00 0.00 2.83
38 39 2.092524 CAGCAGCAACAACAACAACAAC 59.907 45.455 0.00 0.00 0.00 3.32
39 40 2.064762 GCAGCAACAACAACAACAACA 58.935 42.857 0.00 0.00 0.00 3.33
40 41 2.092524 GCAGCAACAACAACAACAACAG 59.907 45.455 0.00 0.00 0.00 3.16
41 42 3.573598 CAGCAACAACAACAACAACAGA 58.426 40.909 0.00 0.00 0.00 3.41
42 43 3.986572 CAGCAACAACAACAACAACAGAA 59.013 39.130 0.00 0.00 0.00 3.02
43 44 4.447054 CAGCAACAACAACAACAACAGAAA 59.553 37.500 0.00 0.00 0.00 2.52
44 45 5.120519 CAGCAACAACAACAACAACAGAAAT 59.879 36.000 0.00 0.00 0.00 2.17
45 46 5.700373 AGCAACAACAACAACAACAGAAATT 59.300 32.000 0.00 0.00 0.00 1.82
46 47 5.789512 GCAACAACAACAACAACAGAAATTG 59.210 36.000 0.00 0.00 35.59 2.32
47 48 5.529014 ACAACAACAACAACAGAAATTGC 57.471 34.783 0.00 0.00 32.47 3.56
48 49 5.237048 ACAACAACAACAACAGAAATTGCT 58.763 33.333 0.00 0.00 32.47 3.91
49 50 5.700373 ACAACAACAACAACAGAAATTGCTT 59.300 32.000 0.00 0.00 32.47 3.91
50 51 6.204495 ACAACAACAACAACAGAAATTGCTTT 59.796 30.769 0.00 0.00 32.47 3.51
51 52 6.799926 ACAACAACAACAGAAATTGCTTTT 57.200 29.167 0.00 0.00 32.47 2.27
52 53 6.601264 ACAACAACAACAGAAATTGCTTTTG 58.399 32.000 10.30 10.30 33.08 2.44
53 54 5.799681 ACAACAACAGAAATTGCTTTTGG 57.200 34.783 15.32 2.96 31.55 3.28
54 55 5.486526 ACAACAACAGAAATTGCTTTTGGA 58.513 33.333 15.32 0.00 31.55 3.53
55 56 5.581874 ACAACAACAGAAATTGCTTTTGGAG 59.418 36.000 15.32 9.93 31.55 3.86
56 57 4.696455 ACAACAGAAATTGCTTTTGGAGG 58.304 39.130 15.32 0.00 31.55 4.30
57 58 3.391506 ACAGAAATTGCTTTTGGAGGC 57.608 42.857 0.00 0.00 0.00 4.70
58 59 2.037641 ACAGAAATTGCTTTTGGAGGCC 59.962 45.455 0.00 0.00 0.00 5.19
59 60 1.273327 AGAAATTGCTTTTGGAGGCCG 59.727 47.619 0.00 0.00 0.00 6.13
60 61 1.272212 GAAATTGCTTTTGGAGGCCGA 59.728 47.619 0.00 0.00 0.00 5.54
61 62 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.00 0.00 4.63
62 63 1.598701 ATTGCTTTTGGAGGCCGAGC 61.599 55.000 0.00 2.19 0.00 5.03
63 64 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
64 65 2.402572 GCTTTTGGAGGCCGAGCTC 61.403 63.158 2.73 2.73 0.00 4.09
65 66 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
66 67 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
68 69 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
69 70 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
70 71 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
71 72 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
72 73 3.157252 GGCCGAGCTCCATGGAGA 61.157 66.667 40.29 9.63 44.53 3.71
73 74 2.735772 GGCCGAGCTCCATGGAGAA 61.736 63.158 40.29 8.81 44.53 2.87
74 75 1.221840 GCCGAGCTCCATGGAGAAA 59.778 57.895 40.29 8.41 44.53 2.52
75 76 0.392998 GCCGAGCTCCATGGAGAAAA 60.393 55.000 40.29 8.00 44.53 2.29
76 77 1.748591 GCCGAGCTCCATGGAGAAAAT 60.749 52.381 40.29 23.80 44.53 1.82
77 78 2.648059 CCGAGCTCCATGGAGAAAATT 58.352 47.619 40.29 21.04 44.53 1.82
78 79 2.615912 CCGAGCTCCATGGAGAAAATTC 59.384 50.000 40.29 25.61 44.53 2.17
79 80 3.273434 CGAGCTCCATGGAGAAAATTCA 58.727 45.455 40.29 4.80 44.53 2.57
80 81 3.691118 CGAGCTCCATGGAGAAAATTCAA 59.309 43.478 40.29 4.01 44.53 2.69
81 82 4.156556 CGAGCTCCATGGAGAAAATTCAAA 59.843 41.667 40.29 3.45 44.53 2.69
82 83 5.163581 CGAGCTCCATGGAGAAAATTCAAAT 60.164 40.000 40.29 14.56 44.53 2.32
83 84 6.616237 AGCTCCATGGAGAAAATTCAAATT 57.384 33.333 40.29 7.13 44.53 1.82
84 85 7.012661 AGCTCCATGGAGAAAATTCAAATTT 57.987 32.000 40.29 6.79 44.53 1.82
86 87 7.940688 AGCTCCATGGAGAAAATTCAAATTTTT 59.059 29.630 40.29 5.45 45.70 1.94
87 88 9.218440 GCTCCATGGAGAAAATTCAAATTTTTA 57.782 29.630 40.29 0.93 45.70 1.52
140 141 7.572523 TCCAAAAATAGATGAAGGCATAGTG 57.427 36.000 0.00 0.00 34.11 2.74
141 142 6.039717 TCCAAAAATAGATGAAGGCATAGTGC 59.960 38.462 0.00 0.00 44.08 4.40
165 166 5.681105 CACAAGTGTGTAAATTTTCAGGACG 59.319 40.000 3.17 0.00 40.96 4.79
166 167 5.587043 ACAAGTGTGTAAATTTTCAGGACGA 59.413 36.000 0.00 0.00 35.72 4.20
167 168 6.094325 ACAAGTGTGTAAATTTTCAGGACGAA 59.906 34.615 0.00 0.00 35.72 3.85
168 169 6.687081 AGTGTGTAAATTTTCAGGACGAAA 57.313 33.333 0.00 0.00 41.95 3.46
169 170 7.272037 AGTGTGTAAATTTTCAGGACGAAAT 57.728 32.000 0.00 0.00 43.12 2.17
170 171 8.385898 AGTGTGTAAATTTTCAGGACGAAATA 57.614 30.769 0.00 0.00 43.12 1.40
171 172 8.287503 AGTGTGTAAATTTTCAGGACGAAATAC 58.712 33.333 0.00 0.00 43.12 1.89
172 173 7.267600 GTGTGTAAATTTTCAGGACGAAATACG 59.732 37.037 0.00 0.00 43.12 3.06
184 185 3.836229 CGAAATACGTCGAAATGAGGG 57.164 47.619 0.00 0.00 43.86 4.30
185 186 2.034001 CGAAATACGTCGAAATGAGGGC 60.034 50.000 0.00 0.00 43.86 5.19
186 187 1.949465 AATACGTCGAAATGAGGGCC 58.051 50.000 0.00 0.00 36.79 5.80
187 188 0.249322 ATACGTCGAAATGAGGGCCG 60.249 55.000 0.00 0.00 36.79 6.13
188 189 1.597797 TACGTCGAAATGAGGGCCGT 61.598 55.000 0.00 0.00 36.79 5.68
189 190 2.452813 CGTCGAAATGAGGGCCGTG 61.453 63.158 0.65 0.00 0.00 4.94
190 191 2.435938 TCGAAATGAGGGCCGTGC 60.436 61.111 0.65 0.00 0.00 5.34
191 192 2.745884 CGAAATGAGGGCCGTGCA 60.746 61.111 0.65 0.90 0.00 4.57
192 193 2.331893 CGAAATGAGGGCCGTGCAA 61.332 57.895 0.65 0.00 0.00 4.08
193 194 1.861542 CGAAATGAGGGCCGTGCAAA 61.862 55.000 0.65 0.00 0.00 3.68
194 195 0.316841 GAAATGAGGGCCGTGCAAAA 59.683 50.000 0.65 0.00 0.00 2.44
195 196 0.755686 AAATGAGGGCCGTGCAAAAA 59.244 45.000 0.65 0.00 0.00 1.94
222 223 9.927668 AGGAAAATATGAGGTTTTTAACACATG 57.072 29.630 0.00 0.00 34.02 3.21
223 224 9.921637 GGAAAATATGAGGTTTTTAACACATGA 57.078 29.630 0.00 0.00 34.02 3.07
241 242 9.631257 AACACATGATACTATTCATCATCCAAA 57.369 29.630 0.00 0.00 40.37 3.28
242 243 9.631257 ACACATGATACTATTCATCATCCAAAA 57.369 29.630 0.00 0.00 40.37 2.44
243 244 9.888878 CACATGATACTATTCATCATCCAAAAC 57.111 33.333 0.00 0.00 40.37 2.43
244 245 9.071276 ACATGATACTATTCATCATCCAAAACC 57.929 33.333 0.00 0.00 40.37 3.27
245 246 9.070179 CATGATACTATTCATCATCCAAAACCA 57.930 33.333 0.00 0.00 40.37 3.67
246 247 9.818270 ATGATACTATTCATCATCCAAAACCAT 57.182 29.630 0.00 0.00 38.47 3.55
247 248 9.070179 TGATACTATTCATCATCCAAAACCATG 57.930 33.333 0.00 0.00 0.00 3.66
248 249 9.288576 GATACTATTCATCATCCAAAACCATGA 57.711 33.333 0.00 0.00 33.55 3.07
249 250 7.959658 ACTATTCATCATCCAAAACCATGAA 57.040 32.000 0.00 0.00 37.75 2.57
250 251 8.543293 ACTATTCATCATCCAAAACCATGAAT 57.457 30.769 9.68 9.68 43.42 2.57
251 252 8.984855 ACTATTCATCATCCAAAACCATGAATT 58.015 29.630 9.96 0.00 39.92 2.17
252 253 9.826574 CTATTCATCATCCAAAACCATGAATTT 57.173 29.630 9.96 0.00 39.92 1.82
253 254 8.726870 ATTCATCATCCAAAACCATGAATTTC 57.273 30.769 0.00 0.00 39.92 2.17
254 255 7.484993 TCATCATCCAAAACCATGAATTTCT 57.515 32.000 0.00 0.00 32.76 2.52
255 256 7.549839 TCATCATCCAAAACCATGAATTTCTC 58.450 34.615 0.00 0.00 32.76 2.87
256 257 7.398047 TCATCATCCAAAACCATGAATTTCTCT 59.602 33.333 0.00 0.00 32.76 3.10
257 258 7.543359 TCATCCAAAACCATGAATTTCTCTT 57.457 32.000 0.00 0.00 0.00 2.85
258 259 7.965718 TCATCCAAAACCATGAATTTCTCTTT 58.034 30.769 0.00 0.00 0.00 2.52
259 260 8.431222 TCATCCAAAACCATGAATTTCTCTTTT 58.569 29.630 0.00 0.00 0.00 2.27
260 261 9.059260 CATCCAAAACCATGAATTTCTCTTTTT 57.941 29.630 0.00 0.00 0.00 1.94
278 279 4.902443 TTTTTGTACAGGTCGCATTTCA 57.098 36.364 0.00 0.00 0.00 2.69
279 280 4.902443 TTTTGTACAGGTCGCATTTCAA 57.098 36.364 0.00 0.00 0.00 2.69
280 281 5.446143 TTTTGTACAGGTCGCATTTCAAT 57.554 34.783 0.00 0.00 0.00 2.57
281 282 4.418013 TTGTACAGGTCGCATTTCAATG 57.582 40.909 0.00 0.00 39.40 2.82
305 306 9.941325 ATGCATTTCATCCTAAAATTTTACACA 57.059 25.926 6.54 0.00 0.00 3.72
306 307 9.202273 TGCATTTCATCCTAAAATTTTACACAC 57.798 29.630 6.54 0.00 0.00 3.82
307 308 9.202273 GCATTTCATCCTAAAATTTTACACACA 57.798 29.630 6.54 0.00 0.00 3.72
320 321 9.691362 AAATTTTACACACAAATACCTCACATC 57.309 29.630 0.00 0.00 0.00 3.06
321 322 6.811253 TTTACACACAAATACCTCACATCC 57.189 37.500 0.00 0.00 0.00 3.51
322 323 4.640771 ACACACAAATACCTCACATCCT 57.359 40.909 0.00 0.00 0.00 3.24
323 324 4.985538 ACACACAAATACCTCACATCCTT 58.014 39.130 0.00 0.00 0.00 3.36
324 325 4.761739 ACACACAAATACCTCACATCCTTG 59.238 41.667 0.00 0.00 0.00 3.61
325 326 4.761739 CACACAAATACCTCACATCCTTGT 59.238 41.667 0.00 0.00 36.15 3.16
326 327 5.937540 CACACAAATACCTCACATCCTTGTA 59.062 40.000 0.00 0.00 33.76 2.41
327 328 5.938125 ACACAAATACCTCACATCCTTGTAC 59.062 40.000 0.00 0.00 33.76 2.90
328 329 6.173339 CACAAATACCTCACATCCTTGTACT 58.827 40.000 0.00 0.00 33.76 2.73
329 330 6.655003 CACAAATACCTCACATCCTTGTACTT 59.345 38.462 0.00 0.00 33.76 2.24
330 331 6.655003 ACAAATACCTCACATCCTTGTACTTG 59.345 38.462 0.00 0.00 33.76 3.16
331 332 6.374417 AATACCTCACATCCTTGTACTTGT 57.626 37.500 0.00 0.00 33.76 3.16
332 333 7.490657 AATACCTCACATCCTTGTACTTGTA 57.509 36.000 0.00 0.00 33.76 2.41
333 334 5.148651 ACCTCACATCCTTGTACTTGTAC 57.851 43.478 4.14 4.14 33.76 2.90
334 335 4.591498 ACCTCACATCCTTGTACTTGTACA 59.409 41.667 9.28 9.28 33.76 2.90
335 336 5.071250 ACCTCACATCCTTGTACTTGTACAA 59.929 40.000 20.66 20.66 37.59 2.41
336 337 6.173339 CCTCACATCCTTGTACTTGTACAAT 58.827 40.000 21.73 8.93 39.00 2.71
337 338 6.655003 CCTCACATCCTTGTACTTGTACAATT 59.345 38.462 21.73 6.20 39.00 2.32
338 339 7.174946 CCTCACATCCTTGTACTTGTACAATTT 59.825 37.037 21.73 10.43 39.00 1.82
339 340 8.458573 TCACATCCTTGTACTTGTACAATTTT 57.541 30.769 21.73 10.16 39.00 1.82
340 341 8.908903 TCACATCCTTGTACTTGTACAATTTTT 58.091 29.630 21.73 8.81 39.00 1.94
364 365 8.854614 TTTTTCCAGATTTTCTTGAAACCAAA 57.145 26.923 3.93 0.00 37.71 3.28
365 366 8.854614 TTTTCCAGATTTTCTTGAAACCAAAA 57.145 26.923 3.93 0.00 37.71 2.44
366 367 8.854614 TTTCCAGATTTTCTTGAAACCAAAAA 57.145 26.923 0.00 0.00 34.48 1.94
367 368 9.460019 TTTCCAGATTTTCTTGAAACCAAAAAT 57.540 25.926 0.00 0.00 34.48 1.82
368 369 9.460019 TTCCAGATTTTCTTGAAACCAAAAATT 57.540 25.926 0.00 0.00 26.93 1.82
369 370 9.460019 TCCAGATTTTCTTGAAACCAAAAATTT 57.540 25.926 0.00 0.00 0.00 1.82
370 371 9.505995 CCAGATTTTCTTGAAACCAAAAATTTG 57.494 29.630 0.00 0.00 37.90 2.32
415 416 2.517650 CCTCTATGAAGGCCGAGAAC 57.482 55.000 0.00 0.00 0.00 3.01
416 417 1.069358 CCTCTATGAAGGCCGAGAACC 59.931 57.143 0.00 0.00 0.00 3.62
417 418 1.757118 CTCTATGAAGGCCGAGAACCA 59.243 52.381 0.00 0.00 0.00 3.67
418 419 2.168521 CTCTATGAAGGCCGAGAACCAA 59.831 50.000 0.00 0.00 0.00 3.67
419 420 2.569853 TCTATGAAGGCCGAGAACCAAA 59.430 45.455 0.00 0.00 0.00 3.28
420 421 2.286365 ATGAAGGCCGAGAACCAAAA 57.714 45.000 0.00 0.00 0.00 2.44
421 422 1.314730 TGAAGGCCGAGAACCAAAAC 58.685 50.000 0.00 0.00 0.00 2.43
422 423 1.314730 GAAGGCCGAGAACCAAAACA 58.685 50.000 0.00 0.00 0.00 2.83
423 424 1.001706 GAAGGCCGAGAACCAAAACAC 60.002 52.381 0.00 0.00 0.00 3.32
424 425 0.822121 AGGCCGAGAACCAAAACACC 60.822 55.000 0.00 0.00 0.00 4.16
425 426 1.104577 GGCCGAGAACCAAAACACCA 61.105 55.000 0.00 0.00 0.00 4.17
426 427 0.958822 GCCGAGAACCAAAACACCAT 59.041 50.000 0.00 0.00 0.00 3.55
427 428 1.068541 GCCGAGAACCAAAACACCATC 60.069 52.381 0.00 0.00 0.00 3.51
428 429 1.539827 CCGAGAACCAAAACACCATCC 59.460 52.381 0.00 0.00 0.00 3.51
429 430 2.504367 CGAGAACCAAAACACCATCCT 58.496 47.619 0.00 0.00 0.00 3.24
430 431 2.484264 CGAGAACCAAAACACCATCCTC 59.516 50.000 0.00 0.00 0.00 3.71
431 432 3.756117 GAGAACCAAAACACCATCCTCT 58.244 45.455 0.00 0.00 0.00 3.69
432 433 4.562757 CGAGAACCAAAACACCATCCTCTA 60.563 45.833 0.00 0.00 0.00 2.43
433 434 4.911390 AGAACCAAAACACCATCCTCTAG 58.089 43.478 0.00 0.00 0.00 2.43
434 435 4.351111 AGAACCAAAACACCATCCTCTAGT 59.649 41.667 0.00 0.00 0.00 2.57
435 436 5.546499 AGAACCAAAACACCATCCTCTAGTA 59.454 40.000 0.00 0.00 0.00 1.82
436 437 5.422214 ACCAAAACACCATCCTCTAGTAG 57.578 43.478 0.00 0.00 0.00 2.57
437 438 4.844655 ACCAAAACACCATCCTCTAGTAGT 59.155 41.667 0.00 0.00 0.00 2.73
438 439 6.021030 ACCAAAACACCATCCTCTAGTAGTA 58.979 40.000 0.00 0.00 0.00 1.82
439 440 6.154706 ACCAAAACACCATCCTCTAGTAGTAG 59.845 42.308 0.00 0.00 0.00 2.57
440 441 6.154706 CCAAAACACCATCCTCTAGTAGTAGT 59.845 42.308 4.51 0.00 0.00 2.73
441 442 7.341256 CCAAAACACCATCCTCTAGTAGTAGTA 59.659 40.741 4.51 0.00 0.00 1.82
442 443 8.407064 CAAAACACCATCCTCTAGTAGTAGTAG 58.593 40.741 5.75 5.75 0.00 2.57
443 444 5.623169 ACACCATCCTCTAGTAGTAGTAGC 58.377 45.833 7.10 0.00 0.00 3.58
444 445 5.132312 ACACCATCCTCTAGTAGTAGTAGCA 59.868 44.000 7.10 0.00 0.00 3.49
445 446 5.703592 CACCATCCTCTAGTAGTAGTAGCAG 59.296 48.000 7.10 6.02 0.00 4.24
446 447 4.698304 CCATCCTCTAGTAGTAGTAGCAGC 59.302 50.000 7.10 0.00 0.00 5.25
447 448 5.309638 CATCCTCTAGTAGTAGTAGCAGCA 58.690 45.833 7.10 0.00 0.00 4.41
448 449 5.369409 TCCTCTAGTAGTAGTAGCAGCAA 57.631 43.478 7.10 0.00 0.00 3.91
449 450 5.124645 TCCTCTAGTAGTAGTAGCAGCAAC 58.875 45.833 7.10 0.00 0.00 4.17
450 451 4.882427 CCTCTAGTAGTAGTAGCAGCAACA 59.118 45.833 7.10 0.00 0.00 3.33
451 452 5.008217 CCTCTAGTAGTAGTAGCAGCAACAG 59.992 48.000 7.10 0.00 0.00 3.16
452 453 5.498393 TCTAGTAGTAGTAGCAGCAACAGT 58.502 41.667 7.10 0.00 0.00 3.55
453 454 6.647229 TCTAGTAGTAGTAGCAGCAACAGTA 58.353 40.000 7.10 0.00 0.00 2.74
454 455 5.821516 AGTAGTAGTAGCAGCAACAGTAG 57.178 43.478 0.00 0.00 0.00 2.57
462 463 6.797454 AGTAGCAGCAACAGTAGTAGTAATC 58.203 40.000 0.00 0.00 0.00 1.75
466 467 7.782049 AGCAGCAACAGTAGTAGTAATCATAA 58.218 34.615 0.00 0.00 0.00 1.90
535 537 7.773864 TTTTAACACAGTACAATCGAAGTCA 57.226 32.000 0.00 0.00 0.00 3.41
556 559 4.402474 TCACTCACATACACTCACCCTATG 59.598 45.833 0.00 0.00 0.00 2.23
573 576 0.040157 ATGAACGCATGCACACACAC 60.040 50.000 19.57 2.06 32.31 3.82
575 578 1.785041 GAACGCATGCACACACACCT 61.785 55.000 19.57 0.00 0.00 4.00
578 581 0.110238 CGCATGCACACACACCTTAC 60.110 55.000 19.57 0.00 0.00 2.34
580 583 0.881118 CATGCACACACACCTTACCC 59.119 55.000 0.00 0.00 0.00 3.69
594 597 2.104963 CCTTACCCCTATGAGCACCTTC 59.895 54.545 0.00 0.00 0.00 3.46
595 598 1.410004 TACCCCTATGAGCACCTTCG 58.590 55.000 0.00 0.00 0.00 3.79
606 609 0.885196 GCACCTTCGAGAGACTGAGT 59.115 55.000 0.00 0.00 41.84 3.41
607 610 1.135517 GCACCTTCGAGAGACTGAGTC 60.136 57.143 3.98 3.98 41.84 3.36
609 612 0.730265 CCTTCGAGAGACTGAGTCGG 59.270 60.000 6.99 0.00 41.84 4.79
610 613 0.098025 CTTCGAGAGACTGAGTCGGC 59.902 60.000 6.99 3.72 41.84 5.54
615 618 2.539953 CGAGAGACTGAGTCGGCATAAC 60.540 54.545 6.99 0.00 37.67 1.89
630 633 7.716998 AGTCGGCATAACATCTTGAAAATCTAT 59.283 33.333 0.00 0.00 0.00 1.98
639 642 7.968246 ACATCTTGAAAATCTATGAAGTCACG 58.032 34.615 0.00 0.00 0.00 4.35
641 644 7.582435 TCTTGAAAATCTATGAAGTCACGAC 57.418 36.000 0.00 0.00 0.00 4.34
644 647 6.687604 TGAAAATCTATGAAGTCACGACAGA 58.312 36.000 0.00 0.00 0.00 3.41
662 665 2.254350 CGTCTTGCAGTCGACGGA 59.746 61.111 20.25 8.64 46.61 4.69
665 668 0.784778 GTCTTGCAGTCGACGGAAAG 59.215 55.000 25.50 25.50 0.00 2.62
675 678 0.966370 CGACGGAAAGGTCTCCTCCT 60.966 60.000 0.00 0.00 39.84 3.69
676 679 0.533032 GACGGAAAGGTCTCCTCCTG 59.467 60.000 0.00 0.00 37.93 3.86
690 693 0.994995 CTCCTGCTGAACGAACATCG 59.005 55.000 0.00 0.00 46.93 3.84
692 695 1.057822 CTGCTGAACGAACATCGCG 59.942 57.895 0.00 0.00 45.12 5.87
699 702 2.125673 CGAACATCGCGGGAAGGT 60.126 61.111 6.13 0.00 31.14 3.50
700 703 1.740296 CGAACATCGCGGGAAGGTT 60.740 57.895 18.44 18.44 31.14 3.50
728 731 5.779529 AAATTCAGGAATAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
733 736 4.214758 TCAGGAATAATGCGAGCATCAATG 59.785 41.667 11.26 5.44 35.31 2.82
735 738 4.214971 AGGAATAATGCGAGCATCAATGTC 59.785 41.667 11.26 5.15 35.31 3.06
736 739 4.023792 GGAATAATGCGAGCATCAATGTCA 60.024 41.667 11.26 0.00 35.31 3.58
739 742 4.380841 AATGCGAGCATCAATGTCAAAT 57.619 36.364 11.26 0.00 35.31 2.32
742 745 5.307926 TGCGAGCATCAATGTCAAATTTA 57.692 34.783 0.00 0.00 33.17 1.40
743 746 5.893687 TGCGAGCATCAATGTCAAATTTAT 58.106 33.333 0.00 0.00 33.17 1.40
745 748 7.479150 TGCGAGCATCAATGTCAAATTTATAA 58.521 30.769 0.00 0.00 33.17 0.98
747 750 7.645340 GCGAGCATCAATGTCAAATTTATAACT 59.355 33.333 0.00 0.00 33.17 2.24
781 786 2.434702 ACCGTTGTCCTCCTTATCATCC 59.565 50.000 0.00 0.00 0.00 3.51
784 789 3.871594 CGTTGTCCTCCTTATCATCCAAC 59.128 47.826 0.00 0.00 0.00 3.77
807 812 4.772100 CCATAGGTTGGTCCATCAAAAAGT 59.228 41.667 0.00 0.00 40.99 2.66
808 813 5.336690 CCATAGGTTGGTCCATCAAAAAGTG 60.337 44.000 0.00 0.00 40.99 3.16
811 816 4.469586 AGGTTGGTCCATCAAAAAGTGTTT 59.530 37.500 0.00 0.00 39.02 2.83
942 949 1.767692 CCAGCCCAGGTAGTTGGTT 59.232 57.895 0.00 0.00 36.45 3.67
948 955 2.940083 GCCCAGGTAGTTGGTTTCTAGC 60.940 54.545 0.00 0.00 36.45 3.42
949 956 2.572104 CCCAGGTAGTTGGTTTCTAGCT 59.428 50.000 0.00 0.00 43.86 3.32
950 957 3.369576 CCCAGGTAGTTGGTTTCTAGCTC 60.370 52.174 0.00 0.00 42.04 4.09
951 958 3.512680 CAGGTAGTTGGTTTCTAGCTCG 58.487 50.000 0.00 0.00 42.04 5.03
1007 1016 1.467190 AAACCCTCCCCCACCATCA 60.467 57.895 0.00 0.00 0.00 3.07
1008 1017 0.855400 AAACCCTCCCCCACCATCAT 60.855 55.000 0.00 0.00 0.00 2.45
1072 1081 0.888736 CTTGAACGGATGTGGTGGCA 60.889 55.000 0.00 0.00 0.00 4.92
1085 1094 0.543749 GGTGGCAAGCTACTCCTCAT 59.456 55.000 8.45 0.00 0.00 2.90
1086 1095 1.762957 GGTGGCAAGCTACTCCTCATA 59.237 52.381 8.45 0.00 0.00 2.15
1087 1096 2.483889 GGTGGCAAGCTACTCCTCATAC 60.484 54.545 8.45 0.00 0.00 2.39
1118 1451 3.712187 GGAGATTTCTCGGCTTAGTGAG 58.288 50.000 1.67 0.00 43.76 3.51
1149 1482 3.075005 ACTCGCGTGGCTATGGGT 61.075 61.111 13.32 0.00 0.00 4.51
1152 1485 2.890474 CGCGTGGCTATGGGTGTC 60.890 66.667 0.00 0.00 0.00 3.67
1447 1780 2.526888 TCGAGATTACCACTGGGAGT 57.473 50.000 0.00 0.00 38.05 3.85
1504 1837 1.228657 GGCGCAAGTTCGAGGACTTT 61.229 55.000 10.83 0.00 37.76 2.66
1529 1862 0.588252 CAACCTGCTCTTGTTCCACG 59.412 55.000 0.00 0.00 0.00 4.94
1557 1890 1.134788 CGCGTCCTTGGATAAGTTCCT 60.135 52.381 0.00 0.00 45.68 3.36
1568 1901 7.310671 CCTTGGATAAGTTCCTGCTATATGCTA 60.311 40.741 0.00 0.00 45.68 3.49
1571 1904 7.038659 GGATAAGTTCCTGCTATATGCTAGTG 58.961 42.308 0.00 0.00 41.78 2.74
1574 1907 5.080337 AGTTCCTGCTATATGCTAGTGCTA 58.920 41.667 0.00 0.00 43.37 3.49
1575 1908 5.047660 AGTTCCTGCTATATGCTAGTGCTAC 60.048 44.000 0.00 0.00 43.37 3.58
1597 1930 3.426568 GCCTGTGCACTTCGCCTC 61.427 66.667 19.41 0.00 41.33 4.70
1600 1933 3.573772 CTGTGCACTTCGCCTCCGA 62.574 63.158 19.41 0.00 42.66 4.55
1637 1970 3.184541 GTGCGACGTGGTATCAAATACT 58.815 45.455 0.00 0.00 36.04 2.12
1651 1984 3.525609 TCAAATACTGCCCCCAAGTGATA 59.474 43.478 0.00 0.00 0.00 2.15
1702 2035 2.103094 TCAGTTTCCTCATATGGGAGCG 59.897 50.000 3.44 0.38 34.06 5.03
1710 2043 3.553922 CCTCATATGGGAGCGAGTTCTTC 60.554 52.174 3.44 0.00 33.47 2.87
1717 2050 2.509561 GCGAGTTCTTCCCGCCTC 60.510 66.667 0.00 0.00 42.77 4.70
1723 2056 0.241213 GTTCTTCCCGCCTCAAAAGC 59.759 55.000 0.00 0.00 0.00 3.51
1733 2066 2.608752 CGCCTCAAAAGCTTGCATCTTT 60.609 45.455 0.00 8.22 35.47 2.52
1748 2081 7.012704 GCTTGCATCTTTATGGTTTCTATCTGA 59.987 37.037 0.00 0.00 33.38 3.27
1762 2095 3.938963 TCTATCTGAACAACCAATTCGCC 59.061 43.478 0.00 0.00 0.00 5.54
1768 2101 1.135315 CAACCAATTCGCCGAGCTG 59.865 57.895 0.00 0.00 0.00 4.24
1776 2109 3.184683 CGCCGAGCTGCTCTGTTC 61.185 66.667 25.59 11.49 0.00 3.18
1822 2155 4.681421 CTCAGGAGCTGCGTCAAA 57.319 55.556 0.00 0.00 0.00 2.69
1844 2177 9.581099 TCAAAGGTTTTCAAGAAATTAAGTCAC 57.419 29.630 0.00 0.00 0.00 3.67
1861 2194 2.031682 GTCACGCACATTGAAGAAGCTT 60.032 45.455 0.00 0.00 0.00 3.74
1864 2197 2.358898 ACGCACATTGAAGAAGCTTGTT 59.641 40.909 8.85 8.85 0.00 2.83
1877 2210 1.140816 GCTTGTTGTCGACTCCTGTC 58.859 55.000 17.92 0.00 39.70 3.51
1917 2250 2.512974 GGTTATCGTGGCACCCCG 60.513 66.667 12.86 0.00 0.00 5.73
1972 2305 4.084013 GGATGCTATTCCAACGGTATTTCG 60.084 45.833 0.00 0.00 35.72 3.46
1984 2317 7.040271 TCCAACGGTATTTCGATATATGAGACA 60.040 37.037 0.00 0.00 0.00 3.41
2005 2338 3.501062 CAGCTTCTCTTGTGAAAGCATCA 59.499 43.478 8.80 0.00 35.05 3.07
2030 2363 5.336150 TCATTTGCTTTGTCTTGGTGAAA 57.664 34.783 0.00 0.00 0.00 2.69
2045 2378 8.829612 GTCTTGGTGAAACATTCAATTTGAAAT 58.170 29.630 15.34 4.90 40.12 2.17
2046 2379 8.828644 TCTTGGTGAAACATTCAATTTGAAATG 58.171 29.630 15.34 14.88 40.12 2.32
2083 2416 0.109781 GTAACCTGTGCAATGTGCCG 60.110 55.000 0.00 0.00 44.23 5.69
2090 2423 0.179156 GTGCAATGTGCCGAATCTGG 60.179 55.000 0.00 0.00 44.23 3.86
2105 2438 0.744874 TCTGGAGCTATCGGGTTTCG 59.255 55.000 0.00 0.00 40.90 3.46
2192 2526 5.741011 TCCCATGTGTTCCTAACAGATTAC 58.259 41.667 0.12 0.00 42.04 1.89
2209 2543 5.356190 CAGATTACCTGTTCATCTTGCACAT 59.644 40.000 0.00 0.00 38.10 3.21
2214 2548 4.256110 CCTGTTCATCTTGCACATGAGTA 58.744 43.478 0.00 0.00 31.84 2.59
2216 2550 5.356190 CCTGTTCATCTTGCACATGAGTAAT 59.644 40.000 0.00 0.00 31.84 1.89
2245 2579 6.833839 TGAATTGACCGTTAAATAAGGTTCG 58.166 36.000 0.00 0.00 38.57 3.95
2337 2671 9.961265 CAATACTATACATCAGTAAAAGGACGA 57.039 33.333 0.00 0.00 32.47 4.20
2341 2675 8.692710 ACTATACATCAGTAAAAGGACGAATCA 58.307 33.333 0.00 0.00 33.13 2.57
2344 2678 7.308782 ACATCAGTAAAAGGACGAATCATTC 57.691 36.000 0.00 0.00 0.00 2.67
2359 2693 7.669438 CGAATCATTCGCTGTTAATTTGATT 57.331 32.000 6.90 0.00 46.97 2.57
2360 2694 7.758388 CGAATCATTCGCTGTTAATTTGATTC 58.242 34.615 6.90 11.24 46.97 2.52
2361 2695 7.641411 CGAATCATTCGCTGTTAATTTGATTCT 59.359 33.333 6.90 0.00 46.97 2.40
2362 2696 9.294030 GAATCATTCGCTGTTAATTTGATTCTT 57.706 29.630 12.98 0.00 42.02 2.52
2368 2702 9.554724 TTCGCTGTTAATTTGATTCTTAATGTC 57.445 29.630 0.00 0.00 0.00 3.06
2449 2783 1.212616 GATGCTCGTTGAGGAATCGG 58.787 55.000 0.00 0.00 32.99 4.18
2521 2855 7.036996 TGTTTGCTTGATAAATGTGAACTCA 57.963 32.000 0.00 0.00 0.00 3.41
2523 2857 7.434897 TGTTTGCTTGATAAATGTGAACTCAAC 59.565 33.333 0.00 0.00 0.00 3.18
2552 2896 1.792367 GGACGCTTTGTTCAAAATGCC 59.208 47.619 0.00 0.00 0.00 4.40
2618 2962 5.722021 ACCTTTTTATGTTTACTGGCCTG 57.278 39.130 8.29 8.29 0.00 4.85
2622 2966 6.015434 CCTTTTTATGTTTACTGGCCTGTCTT 60.015 38.462 19.71 6.11 0.00 3.01
2626 2970 4.901197 TGTTTACTGGCCTGTCTTATGA 57.099 40.909 19.71 0.00 0.00 2.15
2641 2985 8.180267 CCTGTCTTATGATTTGTTTAGCTTCTG 58.820 37.037 0.00 0.00 0.00 3.02
2683 3027 6.486657 CCTGTCAAAAGTTTCCAGTAGAATCA 59.513 38.462 8.31 0.00 33.44 2.57
2685 3029 6.017109 TGTCAAAAGTTTCCAGTAGAATCAGC 60.017 38.462 0.00 0.00 33.44 4.26
2707 3051 3.071206 GAGGGGCAGCTCGTGAGA 61.071 66.667 0.00 0.00 39.12 3.27
2748 3092 4.069304 CGACAGGACCAAAATACTTTCCA 58.931 43.478 0.00 0.00 0.00 3.53
2754 3098 3.826729 GACCAAAATACTTTCCAGTGCCT 59.173 43.478 0.00 0.00 34.06 4.75
2765 3109 0.595095 CCAGTGCCTGAAGTTGAAGC 59.405 55.000 4.00 0.00 32.44 3.86
2782 3126 7.390027 AGTTGAAGCTCATAGAAGTTGTGTAT 58.610 34.615 0.00 0.00 0.00 2.29
2907 3251 5.880332 ACTTTCATCATGCGTATGGTAACTT 59.120 36.000 13.77 0.00 34.97 2.66
2910 3254 2.198406 TCATGCGTATGGTAACTTCGC 58.802 47.619 13.77 7.58 45.17 4.70
2925 3269 0.249120 TTCGCCATGATCCTCGTTGT 59.751 50.000 0.00 0.00 0.00 3.32
2929 3273 1.675714 GCCATGATCCTCGTTGTGTCA 60.676 52.381 0.00 0.00 0.00 3.58
2981 3325 9.781633 TTAATTTGCTAGTACTGGTACTTCAAA 57.218 29.630 24.76 24.76 43.35 2.69
2983 3327 7.486802 TTTGCTAGTACTGGTACTTCAAAAC 57.513 36.000 22.78 10.24 43.35 2.43
2984 3328 6.164417 TGCTAGTACTGGTACTTCAAAACA 57.836 37.500 16.95 6.11 43.35 2.83
2985 3329 6.220930 TGCTAGTACTGGTACTTCAAAACAG 58.779 40.000 16.95 8.81 43.35 3.16
2987 3331 5.625568 AGTACTGGTACTTCAAAACAGGT 57.374 39.130 7.51 0.00 43.35 4.00
2988 3332 5.365619 AGTACTGGTACTTCAAAACAGGTG 58.634 41.667 7.51 0.00 43.35 4.00
2990 3334 4.850680 ACTGGTACTTCAAAACAGGTGAA 58.149 39.130 0.00 0.00 33.63 3.18
2991 3335 5.258051 ACTGGTACTTCAAAACAGGTGAAA 58.742 37.500 0.00 0.00 34.68 2.69
2992 3336 5.891551 ACTGGTACTTCAAAACAGGTGAAAT 59.108 36.000 0.00 0.00 34.68 2.17
3045 3389 9.066939 GTATAATATTCTCACTACAGCACATCG 57.933 37.037 0.00 0.00 0.00 3.84
3054 3398 1.750018 CAGCACATCGAATGGGGCA 60.750 57.895 11.22 0.00 37.22 5.36
3055 3399 1.105167 CAGCACATCGAATGGGGCAT 61.105 55.000 11.22 0.00 37.22 4.40
3061 3405 2.439507 ACATCGAATGGGGCATAGAAGT 59.560 45.455 0.00 0.00 33.60 3.01
3092 3436 4.822896 TGTATTCACTTTGTTACCCGCTTT 59.177 37.500 0.00 0.00 0.00 3.51
3095 3439 2.359531 TCACTTTGTTACCCGCTTTTGG 59.640 45.455 0.00 0.00 0.00 3.28
3099 3443 1.600023 TGTTACCCGCTTTTGGACTG 58.400 50.000 0.00 0.00 0.00 3.51
3136 3480 9.208022 TGCTAGTATGTTTATGCATAATCTGAC 57.792 33.333 19.51 17.64 33.67 3.51
3151 3495 5.914085 AATCTGACGCTCTGTTATAATGC 57.086 39.130 0.00 0.00 0.00 3.56
3162 3506 6.417044 GCTCTGTTATAATGCTGATGCTTTTG 59.583 38.462 0.00 0.00 40.48 2.44
3166 3510 9.309516 CTGTTATAATGCTGATGCTTTTGAATT 57.690 29.630 0.00 0.00 40.48 2.17
3193 3537 2.092646 TGCGGTGGTGGATAAAGCTAAT 60.093 45.455 0.00 0.00 0.00 1.73
3195 3539 3.804036 CGGTGGTGGATAAAGCTAATCA 58.196 45.455 10.29 0.00 0.00 2.57
3196 3540 4.196193 CGGTGGTGGATAAAGCTAATCAA 58.804 43.478 10.29 0.00 0.00 2.57
3197 3541 4.821805 CGGTGGTGGATAAAGCTAATCAAT 59.178 41.667 10.29 0.00 0.00 2.57
3198 3542 5.299279 CGGTGGTGGATAAAGCTAATCAATT 59.701 40.000 10.29 0.00 0.00 2.32
3199 3543 6.507023 GGTGGTGGATAAAGCTAATCAATTG 58.493 40.000 0.00 0.00 0.00 2.32
3200 3544 6.096846 GGTGGTGGATAAAGCTAATCAATTGT 59.903 38.462 5.13 0.00 0.00 2.71
3201 3545 7.363793 GGTGGTGGATAAAGCTAATCAATTGTT 60.364 37.037 5.13 2.21 0.00 2.83
3202 3546 8.682710 GTGGTGGATAAAGCTAATCAATTGTTA 58.317 33.333 5.13 3.25 0.00 2.41
3203 3547 8.902806 TGGTGGATAAAGCTAATCAATTGTTAG 58.097 33.333 16.84 16.84 33.36 2.34
3210 3554 5.796279 GCTAATCAATTGTTAGCGCATTC 57.204 39.130 24.10 0.00 43.00 2.67
3211 3555 5.514279 GCTAATCAATTGTTAGCGCATTCT 58.486 37.500 24.10 0.00 43.00 2.40
3212 3556 5.973565 GCTAATCAATTGTTAGCGCATTCTT 59.026 36.000 24.10 0.00 43.00 2.52
3213 3557 7.132213 GCTAATCAATTGTTAGCGCATTCTTA 58.868 34.615 24.10 0.26 43.00 2.10
3214 3558 7.805071 GCTAATCAATTGTTAGCGCATTCTTAT 59.195 33.333 24.10 0.00 43.00 1.73
3215 3559 9.669353 CTAATCAATTGTTAGCGCATTCTTATT 57.331 29.630 11.47 0.00 0.00 1.40
3216 3560 8.931385 AATCAATTGTTAGCGCATTCTTATTT 57.069 26.923 11.47 0.00 0.00 1.40
3217 3561 8.931385 ATCAATTGTTAGCGCATTCTTATTTT 57.069 26.923 11.47 0.00 0.00 1.82
3218 3562 8.755696 TCAATTGTTAGCGCATTCTTATTTTT 57.244 26.923 11.47 0.00 0.00 1.94
3219 3563 8.859156 TCAATTGTTAGCGCATTCTTATTTTTC 58.141 29.630 11.47 0.00 0.00 2.29
3220 3564 8.863049 CAATTGTTAGCGCATTCTTATTTTTCT 58.137 29.630 11.47 0.00 0.00 2.52
3221 3565 7.795431 TTGTTAGCGCATTCTTATTTTTCTG 57.205 32.000 11.47 0.00 0.00 3.02
3222 3566 6.321717 TGTTAGCGCATTCTTATTTTTCTGG 58.678 36.000 11.47 0.00 0.00 3.86
3235 3579 1.398692 TTTCTGGAAAAGTTGGCGCT 58.601 45.000 7.64 0.00 0.00 5.92
3249 3593 0.880718 GGCGCTAAGTGTCCCTATGC 60.881 60.000 7.64 0.00 0.00 3.14
3264 3608 7.014422 GTGTCCCTATGCAAACTATAGTACTCT 59.986 40.741 5.65 0.00 0.00 3.24
3278 3622 9.672673 ACTATAGTACTCTACTAAAACCGAACA 57.327 33.333 2.75 0.00 43.82 3.18
3320 3664 5.708230 TGTAGAACAAGTCTTGGTTTTGTGT 59.292 36.000 16.85 0.00 37.84 3.72
3378 3723 6.990798 TCACAGATGCATAATTTCCAAACAA 58.009 32.000 0.00 0.00 0.00 2.83
3382 3727 8.723311 ACAGATGCATAATTTCCAAACAAAATG 58.277 29.630 0.00 0.00 0.00 2.32
3391 3736 7.989416 ATTTCCAAACAAAATGATGCTGATT 57.011 28.000 0.00 0.00 0.00 2.57
3405 3750 6.845302 TGATGCTGATTTACACAAGAATGTC 58.155 36.000 0.00 0.00 37.82 3.06
3437 3782 3.185246 AGTTAGAATGTGATGGCGAGG 57.815 47.619 0.00 0.00 0.00 4.63
3439 3784 3.704566 AGTTAGAATGTGATGGCGAGGTA 59.295 43.478 0.00 0.00 0.00 3.08
3440 3785 4.161565 AGTTAGAATGTGATGGCGAGGTAA 59.838 41.667 0.00 0.00 0.00 2.85
3447 3792 1.112113 GATGGCGAGGTAAGAGTGGA 58.888 55.000 0.00 0.00 0.00 4.02
3462 3807 2.163412 GAGTGGAGTGAGCTAGTGACTG 59.837 54.545 0.00 0.00 0.00 3.51
3498 3843 8.548877 ACTGTGGAATGATGTAACTAGGTTATT 58.451 33.333 0.00 0.00 30.49 1.40
3499 3844 9.396022 CTGTGGAATGATGTAACTAGGTTATTT 57.604 33.333 0.00 0.00 30.49 1.40
3525 3870 9.737427 TTTTTGTATCAGCAAACGAAATTAAGA 57.263 25.926 0.00 0.00 37.98 2.10
3527 3872 9.554724 TTTGTATCAGCAAACGAAATTAAGATC 57.445 29.630 0.00 0.00 33.91 2.75
3528 3873 8.492673 TGTATCAGCAAACGAAATTAAGATCT 57.507 30.769 0.00 0.00 0.00 2.75
3529 3874 8.390354 TGTATCAGCAAACGAAATTAAGATCTG 58.610 33.333 0.00 0.00 0.00 2.90
3561 3906 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
3563 3908 6.013639 ACTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
3565 3910 5.514136 CCCTCCGTCCCATAATATAAAAGCA 60.514 44.000 0.00 0.00 0.00 3.91
3569 3914 8.106247 TCCGTCCCATAATATAAAAGCATTTC 57.894 34.615 0.00 0.00 37.28 2.17
3570 3915 7.021196 CCGTCCCATAATATAAAAGCATTTCG 58.979 38.462 0.00 0.00 37.28 3.46
3572 3917 7.094975 CGTCCCATAATATAAAAGCATTTCGGA 60.095 37.037 0.00 0.00 37.28 4.55
3573 3918 8.021396 GTCCCATAATATAAAAGCATTTCGGAC 58.979 37.037 0.00 0.00 37.28 4.79
3574 3919 7.721842 TCCCATAATATAAAAGCATTTCGGACA 59.278 33.333 0.00 0.00 37.28 4.02
3575 3920 7.807907 CCCATAATATAAAAGCATTTCGGACAC 59.192 37.037 0.00 0.00 37.28 3.67
3576 3921 8.567948 CCATAATATAAAAGCATTTCGGACACT 58.432 33.333 0.00 0.00 37.28 3.55
3579 3924 8.500753 AATATAAAAGCATTTCGGACACTACA 57.499 30.769 0.00 0.00 37.28 2.74
3580 3925 4.483476 AAAAGCATTTCGGACACTACAC 57.517 40.909 0.00 0.00 37.28 2.90
3621 3966 4.736611 ATATTACAGGACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
3622 3967 2.431954 TTACAGGACGGAGGGAGTAG 57.568 55.000 0.00 0.00 0.00 2.57
3623 3968 1.293062 TACAGGACGGAGGGAGTAGT 58.707 55.000 0.00 0.00 0.00 2.73
3630 3975 6.183361 ACAGGACGGAGGGAGTAGTATAATTA 60.183 42.308 0.00 0.00 0.00 1.40
3635 3980 5.349809 GGAGGGAGTAGTATAATTATGCGC 58.650 45.833 8.28 0.00 0.00 6.09
3661 4009 4.261322 GGATAGCGACATACACTTCGGTTA 60.261 45.833 0.67 0.00 43.03 2.85
3665 4013 3.183754 CGACATACACTTCGGTTATGCA 58.816 45.455 0.00 0.00 0.00 3.96
3669 4017 4.570772 ACATACACTTCGGTTATGCATGTC 59.429 41.667 10.16 1.75 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067821 GCTGCTGCTCCTACTACGATT 59.932 52.381 8.53 0.00 36.03 3.34
1 2 0.671251 GCTGCTGCTCCTACTACGAT 59.329 55.000 8.53 0.00 36.03 3.73
2 3 0.679960 TGCTGCTGCTCCTACTACGA 60.680 55.000 17.00 0.00 40.48 3.43
3 4 0.248825 CTGCTGCTGCTCCTACTACG 60.249 60.000 17.00 0.00 40.48 3.51
4 5 0.529555 GCTGCTGCTGCTCCTACTAC 60.530 60.000 22.10 0.00 40.48 2.73
5 6 0.972471 TGCTGCTGCTGCTCCTACTA 60.972 55.000 27.67 7.14 40.48 1.82
6 7 1.834856 TTGCTGCTGCTGCTCCTACT 61.835 55.000 27.67 0.00 40.48 2.57
7 8 1.376424 TTGCTGCTGCTGCTCCTAC 60.376 57.895 27.67 3.30 40.48 3.18
8 9 1.376424 GTTGCTGCTGCTGCTCCTA 60.376 57.895 27.67 8.85 40.48 2.94
9 10 2.672307 GTTGCTGCTGCTGCTCCT 60.672 61.111 27.67 0.00 40.48 3.69
10 11 2.558286 TTGTTGCTGCTGCTGCTCC 61.558 57.895 27.67 19.17 40.48 4.70
11 12 1.371389 GTTGTTGCTGCTGCTGCTC 60.371 57.895 27.67 20.91 40.48 4.26
12 13 1.669049 TTGTTGTTGCTGCTGCTGCT 61.669 50.000 27.67 0.00 40.48 4.24
13 14 1.227031 TTGTTGTTGCTGCTGCTGC 60.227 52.632 22.51 22.51 40.48 5.25
14 15 0.179132 TGTTGTTGTTGCTGCTGCTG 60.179 50.000 17.00 0.77 40.48 4.41
15 16 0.531657 TTGTTGTTGTTGCTGCTGCT 59.468 45.000 17.00 0.00 40.48 4.24
16 17 0.646895 GTTGTTGTTGTTGCTGCTGC 59.353 50.000 8.89 8.89 40.20 5.25
17 18 1.993542 TGTTGTTGTTGTTGCTGCTG 58.006 45.000 0.00 0.00 0.00 4.41
18 19 2.288702 TGTTGTTGTTGTTGTTGCTGCT 60.289 40.909 0.00 0.00 0.00 4.24
19 20 2.064762 TGTTGTTGTTGTTGTTGCTGC 58.935 42.857 0.00 0.00 0.00 5.25
20 21 3.573598 TCTGTTGTTGTTGTTGTTGCTG 58.426 40.909 0.00 0.00 0.00 4.41
21 22 3.932545 TCTGTTGTTGTTGTTGTTGCT 57.067 38.095 0.00 0.00 0.00 3.91
22 23 4.981389 TTTCTGTTGTTGTTGTTGTTGC 57.019 36.364 0.00 0.00 0.00 4.17
23 24 5.789512 GCAATTTCTGTTGTTGTTGTTGTTG 59.210 36.000 0.00 0.00 0.00 3.33
24 25 5.700373 AGCAATTTCTGTTGTTGTTGTTGTT 59.300 32.000 0.00 0.00 0.00 2.83
25 26 5.237048 AGCAATTTCTGTTGTTGTTGTTGT 58.763 33.333 0.00 0.00 0.00 3.32
26 27 5.783100 AGCAATTTCTGTTGTTGTTGTTG 57.217 34.783 0.00 0.00 0.00 3.33
27 28 6.799926 AAAGCAATTTCTGTTGTTGTTGTT 57.200 29.167 0.00 0.00 0.00 2.83
28 29 6.348376 CCAAAAGCAATTTCTGTTGTTGTTGT 60.348 34.615 7.17 0.00 36.41 3.32
29 30 6.022821 CCAAAAGCAATTTCTGTTGTTGTTG 58.977 36.000 7.17 0.00 37.31 3.33
30 31 5.936956 TCCAAAAGCAATTTCTGTTGTTGTT 59.063 32.000 7.17 0.00 30.99 2.83
31 32 5.486526 TCCAAAAGCAATTTCTGTTGTTGT 58.513 33.333 7.17 0.00 30.99 3.32
32 33 5.006941 CCTCCAAAAGCAATTTCTGTTGTTG 59.993 40.000 7.17 0.53 30.99 3.33
33 34 5.118286 CCTCCAAAAGCAATTTCTGTTGTT 58.882 37.500 7.17 0.00 30.99 2.83
34 35 4.696455 CCTCCAAAAGCAATTTCTGTTGT 58.304 39.130 7.17 0.00 30.99 3.32
35 36 3.495753 GCCTCCAAAAGCAATTTCTGTTG 59.504 43.478 1.34 1.34 32.39 3.33
36 37 3.494924 GGCCTCCAAAAGCAATTTCTGTT 60.495 43.478 0.00 0.00 0.00 3.16
37 38 2.037641 GGCCTCCAAAAGCAATTTCTGT 59.962 45.455 0.00 0.00 0.00 3.41
38 39 2.691927 GGCCTCCAAAAGCAATTTCTG 58.308 47.619 0.00 0.00 0.00 3.02
39 40 1.273327 CGGCCTCCAAAAGCAATTTCT 59.727 47.619 0.00 0.00 0.00 2.52
40 41 1.272212 TCGGCCTCCAAAAGCAATTTC 59.728 47.619 0.00 0.00 0.00 2.17
41 42 1.273327 CTCGGCCTCCAAAAGCAATTT 59.727 47.619 0.00 0.00 0.00 1.82
42 43 0.890683 CTCGGCCTCCAAAAGCAATT 59.109 50.000 0.00 0.00 0.00 2.32
43 44 1.598701 GCTCGGCCTCCAAAAGCAAT 61.599 55.000 0.00 0.00 33.21 3.56
44 45 2.268076 GCTCGGCCTCCAAAAGCAA 61.268 57.895 0.00 0.00 33.21 3.91
45 46 2.672996 GCTCGGCCTCCAAAAGCA 60.673 61.111 0.00 0.00 33.21 3.91
46 47 2.360475 AGCTCGGCCTCCAAAAGC 60.360 61.111 0.00 0.00 0.00 3.51
47 48 3.896479 GAGCTCGGCCTCCAAAAG 58.104 61.111 0.00 0.00 0.00 2.27
53 54 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
54 55 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
55 56 2.257409 TTTCTCCATGGAGCTCGGCC 62.257 60.000 33.39 0.00 41.71 6.13
56 57 0.392998 TTTTCTCCATGGAGCTCGGC 60.393 55.000 33.39 0.00 41.71 5.54
57 58 2.338577 ATTTTCTCCATGGAGCTCGG 57.661 50.000 33.39 13.90 41.71 4.63
58 59 3.273434 TGAATTTTCTCCATGGAGCTCG 58.727 45.455 33.39 14.29 41.71 5.03
59 60 5.649782 TTTGAATTTTCTCCATGGAGCTC 57.350 39.130 33.39 22.65 41.71 4.09
60 61 6.616237 AATTTGAATTTTCTCCATGGAGCT 57.384 33.333 33.39 16.55 41.71 4.09
61 62 7.677454 AAAATTTGAATTTTCTCCATGGAGC 57.323 32.000 33.39 19.94 43.12 4.70
114 115 9.288576 CACTATGCCTTCATCTATTTTTGGATA 57.711 33.333 0.00 0.00 34.22 2.59
115 116 7.255730 GCACTATGCCTTCATCTATTTTTGGAT 60.256 37.037 0.00 0.00 37.42 3.41
116 117 6.039717 GCACTATGCCTTCATCTATTTTTGGA 59.960 38.462 0.00 0.00 37.42 3.53
117 118 6.183360 TGCACTATGCCTTCATCTATTTTTGG 60.183 38.462 0.00 0.00 44.23 3.28
118 119 6.694411 GTGCACTATGCCTTCATCTATTTTTG 59.306 38.462 10.32 0.00 44.23 2.44
119 120 6.377996 TGTGCACTATGCCTTCATCTATTTTT 59.622 34.615 19.41 0.00 44.23 1.94
120 121 5.887598 TGTGCACTATGCCTTCATCTATTTT 59.112 36.000 19.41 0.00 44.23 1.82
121 122 5.439721 TGTGCACTATGCCTTCATCTATTT 58.560 37.500 19.41 0.00 44.23 1.40
122 123 5.039920 TGTGCACTATGCCTTCATCTATT 57.960 39.130 19.41 0.00 44.23 1.73
123 124 4.694760 TGTGCACTATGCCTTCATCTAT 57.305 40.909 19.41 0.00 44.23 1.98
124 125 4.080919 ACTTGTGCACTATGCCTTCATCTA 60.081 41.667 19.41 0.00 44.23 1.98
125 126 3.276857 CTTGTGCACTATGCCTTCATCT 58.723 45.455 19.41 0.00 44.23 2.90
126 127 3.012518 ACTTGTGCACTATGCCTTCATC 58.987 45.455 19.41 0.00 44.23 2.92
127 128 2.751259 CACTTGTGCACTATGCCTTCAT 59.249 45.455 19.41 0.00 44.23 2.57
128 129 2.153645 CACTTGTGCACTATGCCTTCA 58.846 47.619 19.41 0.00 44.23 3.02
129 130 2.095567 CACACTTGTGCACTATGCCTTC 60.096 50.000 19.41 0.00 44.23 3.46
130 131 1.881973 CACACTTGTGCACTATGCCTT 59.118 47.619 19.41 0.00 44.23 4.35
131 132 1.527034 CACACTTGTGCACTATGCCT 58.473 50.000 19.41 0.00 44.23 4.75
141 142 7.888839 TTCGTCCTGAAAATTTACACACTTGTG 60.889 37.037 7.84 7.84 41.84 3.33
142 143 5.587043 TCGTCCTGAAAATTTACACACTTGT 59.413 36.000 0.00 0.00 40.02 3.16
143 144 6.055231 TCGTCCTGAAAATTTACACACTTG 57.945 37.500 0.00 0.00 0.00 3.16
144 145 6.687081 TTCGTCCTGAAAATTTACACACTT 57.313 33.333 0.00 0.00 32.37 3.16
145 146 6.687081 TTTCGTCCTGAAAATTTACACACT 57.313 33.333 0.00 0.00 43.46 3.55
164 165 2.034001 GCCCTCATTTCGACGTATTTCG 60.034 50.000 0.00 0.00 46.00 3.46
165 166 2.287103 GGCCCTCATTTCGACGTATTTC 59.713 50.000 0.00 0.00 0.00 2.17
166 167 2.285977 GGCCCTCATTTCGACGTATTT 58.714 47.619 0.00 0.00 0.00 1.40
167 168 1.805120 CGGCCCTCATTTCGACGTATT 60.805 52.381 0.00 0.00 0.00 1.89
168 169 0.249322 CGGCCCTCATTTCGACGTAT 60.249 55.000 0.00 0.00 0.00 3.06
169 170 1.140161 CGGCCCTCATTTCGACGTA 59.860 57.895 0.00 0.00 0.00 3.57
170 171 2.125673 CGGCCCTCATTTCGACGT 60.126 61.111 0.00 0.00 0.00 4.34
171 172 2.125673 ACGGCCCTCATTTCGACG 60.126 61.111 0.00 0.00 0.00 5.12
172 173 2.750888 GCACGGCCCTCATTTCGAC 61.751 63.158 0.00 0.00 0.00 4.20
173 174 2.435938 GCACGGCCCTCATTTCGA 60.436 61.111 0.00 0.00 0.00 3.71
174 175 1.861542 TTTGCACGGCCCTCATTTCG 61.862 55.000 0.00 0.00 0.00 3.46
175 176 0.316841 TTTTGCACGGCCCTCATTTC 59.683 50.000 0.00 0.00 0.00 2.17
176 177 0.755686 TTTTTGCACGGCCCTCATTT 59.244 45.000 0.00 0.00 0.00 2.32
177 178 2.435418 TTTTTGCACGGCCCTCATT 58.565 47.368 0.00 0.00 0.00 2.57
178 179 4.189539 TTTTTGCACGGCCCTCAT 57.810 50.000 0.00 0.00 0.00 2.90
196 197 9.927668 CATGTGTTAAAAACCTCATATTTTCCT 57.072 29.630 0.00 0.00 31.62 3.36
197 198 9.921637 TCATGTGTTAAAAACCTCATATTTTCC 57.078 29.630 0.00 0.00 31.62 3.13
215 216 9.631257 TTTGGATGATGAATAGTATCATGTGTT 57.369 29.630 5.30 0.00 43.37 3.32
216 217 9.631257 TTTTGGATGATGAATAGTATCATGTGT 57.369 29.630 5.30 0.00 43.37 3.72
217 218 9.888878 GTTTTGGATGATGAATAGTATCATGTG 57.111 33.333 5.30 0.00 43.37 3.21
218 219 9.071276 GGTTTTGGATGATGAATAGTATCATGT 57.929 33.333 5.30 0.00 43.37 3.21
219 220 9.070179 TGGTTTTGGATGATGAATAGTATCATG 57.930 33.333 5.30 0.00 43.37 3.07
220 221 9.818270 ATGGTTTTGGATGATGAATAGTATCAT 57.182 29.630 0.00 0.00 45.35 2.45
221 222 9.070179 CATGGTTTTGGATGATGAATAGTATCA 57.930 33.333 0.00 0.00 38.76 2.15
222 223 9.288576 TCATGGTTTTGGATGATGAATAGTATC 57.711 33.333 0.00 0.00 0.00 2.24
223 224 9.645128 TTCATGGTTTTGGATGATGAATAGTAT 57.355 29.630 0.00 0.00 30.05 2.12
224 225 9.645128 ATTCATGGTTTTGGATGATGAATAGTA 57.355 29.630 0.00 0.00 40.37 1.82
225 226 7.959658 TTCATGGTTTTGGATGATGAATAGT 57.040 32.000 0.00 0.00 30.05 2.12
226 227 9.826574 AAATTCATGGTTTTGGATGATGAATAG 57.173 29.630 0.00 0.00 40.97 1.73
227 228 9.820725 GAAATTCATGGTTTTGGATGATGAATA 57.179 29.630 0.00 0.00 40.97 1.75
228 229 8.545472 AGAAATTCATGGTTTTGGATGATGAAT 58.455 29.630 0.00 0.00 42.72 2.57
229 230 7.909518 AGAAATTCATGGTTTTGGATGATGAA 58.090 30.769 0.00 0.00 37.42 2.57
230 231 7.398047 AGAGAAATTCATGGTTTTGGATGATGA 59.602 33.333 0.00 0.00 0.00 2.92
231 232 7.553334 AGAGAAATTCATGGTTTTGGATGATG 58.447 34.615 0.00 0.00 0.00 3.07
232 233 7.729124 AGAGAAATTCATGGTTTTGGATGAT 57.271 32.000 0.00 0.00 0.00 2.45
233 234 7.543359 AAGAGAAATTCATGGTTTTGGATGA 57.457 32.000 0.00 0.00 0.00 2.92
234 235 8.611654 AAAAGAGAAATTCATGGTTTTGGATG 57.388 30.769 0.00 0.00 0.00 3.51
257 258 4.902443 TGAAATGCGACCTGTACAAAAA 57.098 36.364 0.00 0.00 0.00 1.94
258 259 4.902443 TTGAAATGCGACCTGTACAAAA 57.098 36.364 0.00 0.00 0.00 2.44
259 260 4.793071 CATTGAAATGCGACCTGTACAAA 58.207 39.130 0.00 0.00 0.00 2.83
260 261 4.418013 CATTGAAATGCGACCTGTACAA 57.582 40.909 0.00 0.00 0.00 2.41
279 280 9.941325 TGTGTAAAATTTTAGGATGAAATGCAT 57.059 25.926 10.92 0.00 36.98 3.96
280 281 9.202273 GTGTGTAAAATTTTAGGATGAAATGCA 57.798 29.630 10.92 0.00 36.98 3.96
281 282 9.202273 TGTGTGTAAAATTTTAGGATGAAATGC 57.798 29.630 10.92 0.00 33.28 3.56
294 295 9.691362 GATGTGAGGTATTTGTGTGTAAAATTT 57.309 29.630 0.00 0.00 0.00 1.82
295 296 8.303876 GGATGTGAGGTATTTGTGTGTAAAATT 58.696 33.333 0.00 0.00 0.00 1.82
296 297 7.669722 AGGATGTGAGGTATTTGTGTGTAAAAT 59.330 33.333 0.00 0.00 0.00 1.82
297 298 7.001674 AGGATGTGAGGTATTTGTGTGTAAAA 58.998 34.615 0.00 0.00 0.00 1.52
298 299 6.539173 AGGATGTGAGGTATTTGTGTGTAAA 58.461 36.000 0.00 0.00 0.00 2.01
299 300 6.121776 AGGATGTGAGGTATTTGTGTGTAA 57.878 37.500 0.00 0.00 0.00 2.41
300 301 5.755409 AGGATGTGAGGTATTTGTGTGTA 57.245 39.130 0.00 0.00 0.00 2.90
301 302 4.640771 AGGATGTGAGGTATTTGTGTGT 57.359 40.909 0.00 0.00 0.00 3.72
302 303 4.761739 ACAAGGATGTGAGGTATTTGTGTG 59.238 41.667 0.00 0.00 38.69 3.82
303 304 4.985538 ACAAGGATGTGAGGTATTTGTGT 58.014 39.130 0.00 0.00 38.69 3.72
304 305 6.173339 AGTACAAGGATGTGAGGTATTTGTG 58.827 40.000 0.00 0.00 40.84 3.33
305 306 6.374417 AGTACAAGGATGTGAGGTATTTGT 57.626 37.500 0.00 0.00 40.84 2.83
306 307 6.655003 ACAAGTACAAGGATGTGAGGTATTTG 59.345 38.462 0.00 0.00 40.84 2.32
307 308 6.779860 ACAAGTACAAGGATGTGAGGTATTT 58.220 36.000 0.00 0.00 40.84 1.40
308 309 6.374417 ACAAGTACAAGGATGTGAGGTATT 57.626 37.500 0.00 0.00 40.84 1.89
309 310 6.439375 TGTACAAGTACAAGGATGTGAGGTAT 59.561 38.462 10.42 0.00 42.49 2.73
310 311 5.776208 TGTACAAGTACAAGGATGTGAGGTA 59.224 40.000 10.42 0.00 42.49 3.08
311 312 4.591498 TGTACAAGTACAAGGATGTGAGGT 59.409 41.667 10.42 0.00 42.49 3.85
312 313 5.147330 TGTACAAGTACAAGGATGTGAGG 57.853 43.478 10.42 0.00 42.49 3.86
339 340 8.854614 TTTGGTTTCAAGAAAATCTGGAAAAA 57.145 26.923 10.66 2.09 45.19 1.94
340 341 8.854614 TTTTGGTTTCAAGAAAATCTGGAAAA 57.145 26.923 10.66 0.00 45.19 2.29
341 342 8.854614 TTTTTGGTTTCAAGAAAATCTGGAAA 57.145 26.923 5.94 5.94 42.47 3.13
342 343 9.460019 AATTTTTGGTTTCAAGAAAATCTGGAA 57.540 25.926 0.00 0.00 34.75 3.53
343 344 9.460019 AAATTTTTGGTTTCAAGAAAATCTGGA 57.540 25.926 0.00 0.00 32.01 3.86
344 345 9.505995 CAAATTTTTGGTTTCAAGAAAATCTGG 57.494 29.630 0.00 0.00 32.01 3.86
396 397 1.069358 GGTTCTCGGCCTTCATAGAGG 59.931 57.143 0.00 0.00 39.93 3.69
397 398 1.757118 TGGTTCTCGGCCTTCATAGAG 59.243 52.381 0.00 0.00 0.00 2.43
398 399 1.860641 TGGTTCTCGGCCTTCATAGA 58.139 50.000 0.00 0.00 0.00 1.98
399 400 2.691409 TTGGTTCTCGGCCTTCATAG 57.309 50.000 0.00 0.00 0.00 2.23
400 401 3.078837 GTTTTGGTTCTCGGCCTTCATA 58.921 45.455 0.00 0.00 0.00 2.15
401 402 1.886542 GTTTTGGTTCTCGGCCTTCAT 59.113 47.619 0.00 0.00 0.00 2.57
402 403 1.314730 GTTTTGGTTCTCGGCCTTCA 58.685 50.000 0.00 0.00 0.00 3.02
403 404 1.001706 GTGTTTTGGTTCTCGGCCTTC 60.002 52.381 0.00 0.00 0.00 3.46
404 405 1.029681 GTGTTTTGGTTCTCGGCCTT 58.970 50.000 0.00 0.00 0.00 4.35
405 406 0.822121 GGTGTTTTGGTTCTCGGCCT 60.822 55.000 0.00 0.00 0.00 5.19
406 407 1.104577 TGGTGTTTTGGTTCTCGGCC 61.105 55.000 0.00 0.00 0.00 6.13
407 408 0.958822 ATGGTGTTTTGGTTCTCGGC 59.041 50.000 0.00 0.00 0.00 5.54
408 409 1.539827 GGATGGTGTTTTGGTTCTCGG 59.460 52.381 0.00 0.00 0.00 4.63
409 410 2.484264 GAGGATGGTGTTTTGGTTCTCG 59.516 50.000 0.00 0.00 0.00 4.04
410 411 3.756117 AGAGGATGGTGTTTTGGTTCTC 58.244 45.455 0.00 0.00 0.00 2.87
411 412 3.884037 AGAGGATGGTGTTTTGGTTCT 57.116 42.857 0.00 0.00 0.00 3.01
412 413 4.652822 ACTAGAGGATGGTGTTTTGGTTC 58.347 43.478 0.00 0.00 0.00 3.62
413 414 4.724279 ACTAGAGGATGGTGTTTTGGTT 57.276 40.909 0.00 0.00 0.00 3.67
414 415 4.844655 ACTACTAGAGGATGGTGTTTTGGT 59.155 41.667 0.00 0.00 0.00 3.67
415 416 5.422214 ACTACTAGAGGATGGTGTTTTGG 57.578 43.478 0.00 0.00 0.00 3.28
416 417 7.171630 ACTACTACTAGAGGATGGTGTTTTG 57.828 40.000 0.00 0.00 0.00 2.44
417 418 7.068470 GCTACTACTACTAGAGGATGGTGTTTT 59.932 40.741 0.00 0.00 0.00 2.43
418 419 6.546772 GCTACTACTACTAGAGGATGGTGTTT 59.453 42.308 0.00 0.00 0.00 2.83
419 420 6.063404 GCTACTACTACTAGAGGATGGTGTT 58.937 44.000 0.00 0.00 0.00 3.32
420 421 5.132312 TGCTACTACTACTAGAGGATGGTGT 59.868 44.000 0.00 0.00 0.00 4.16
421 422 5.622180 TGCTACTACTACTAGAGGATGGTG 58.378 45.833 0.00 0.00 0.00 4.17
422 423 5.746656 GCTGCTACTACTACTAGAGGATGGT 60.747 48.000 0.00 0.00 0.00 3.55
423 424 4.698304 GCTGCTACTACTACTAGAGGATGG 59.302 50.000 0.00 0.00 0.00 3.51
424 425 5.309638 TGCTGCTACTACTACTAGAGGATG 58.690 45.833 0.00 0.00 0.00 3.51
425 426 5.570205 TGCTGCTACTACTACTAGAGGAT 57.430 43.478 0.00 0.00 0.00 3.24
426 427 5.124645 GTTGCTGCTACTACTACTAGAGGA 58.875 45.833 6.98 0.00 0.00 3.71
427 428 4.882427 TGTTGCTGCTACTACTACTAGAGG 59.118 45.833 14.81 0.00 0.00 3.69
428 429 5.587043 ACTGTTGCTGCTACTACTACTAGAG 59.413 44.000 14.81 3.85 0.00 2.43
429 430 5.498393 ACTGTTGCTGCTACTACTACTAGA 58.502 41.667 14.81 0.00 0.00 2.43
430 431 5.821516 ACTGTTGCTGCTACTACTACTAG 57.178 43.478 14.81 5.13 0.00 2.57
431 432 6.413052 ACTACTGTTGCTGCTACTACTACTA 58.587 40.000 14.81 0.00 0.00 1.82
432 433 5.254901 ACTACTGTTGCTGCTACTACTACT 58.745 41.667 14.81 0.00 0.00 2.57
433 434 5.564048 ACTACTGTTGCTGCTACTACTAC 57.436 43.478 14.81 0.00 0.00 2.73
434 435 6.413052 ACTACTACTGTTGCTGCTACTACTA 58.587 40.000 14.81 2.00 0.00 1.82
435 436 5.254901 ACTACTACTGTTGCTGCTACTACT 58.745 41.667 14.81 0.99 0.00 2.57
436 437 5.564048 ACTACTACTGTTGCTGCTACTAC 57.436 43.478 14.81 2.46 0.00 2.73
437 438 7.555195 TGATTACTACTACTGTTGCTGCTACTA 59.445 37.037 14.81 0.22 0.00 1.82
438 439 6.377429 TGATTACTACTACTGTTGCTGCTACT 59.623 38.462 14.81 0.00 0.00 2.57
439 440 6.561614 TGATTACTACTACTGTTGCTGCTAC 58.438 40.000 7.29 7.29 0.00 3.58
440 441 6.769134 TGATTACTACTACTGTTGCTGCTA 57.231 37.500 0.00 0.00 0.00 3.49
441 442 5.661056 TGATTACTACTACTGTTGCTGCT 57.339 39.130 0.00 0.00 0.00 4.24
442 443 8.420374 TTTATGATTACTACTACTGTTGCTGC 57.580 34.615 0.00 0.00 0.00 5.25
519 521 4.546570 TGTGAGTGACTTCGATTGTACTG 58.453 43.478 0.00 0.00 0.00 2.74
529 531 4.238514 GGTGAGTGTATGTGAGTGACTTC 58.761 47.826 0.00 0.00 0.00 3.01
535 537 4.610333 TCATAGGGTGAGTGTATGTGAGT 58.390 43.478 0.00 0.00 31.80 3.41
556 559 1.370414 GGTGTGTGTGCATGCGTTC 60.370 57.895 14.09 6.79 0.00 3.95
573 576 1.807814 AGGTGCTCATAGGGGTAAGG 58.192 55.000 0.00 0.00 0.00 2.69
575 578 1.760613 CGAAGGTGCTCATAGGGGTAA 59.239 52.381 0.00 0.00 0.00 2.85
578 581 0.390860 CTCGAAGGTGCTCATAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
580 583 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
594 597 1.300481 TATGCCGACTCAGTCTCTCG 58.700 55.000 2.61 0.00 0.00 4.04
595 598 2.423892 TGTTATGCCGACTCAGTCTCTC 59.576 50.000 2.61 0.00 0.00 3.20
606 609 7.714813 TCATAGATTTTCAAGATGTTATGCCGA 59.285 33.333 0.00 0.00 0.00 5.54
607 610 7.864686 TCATAGATTTTCAAGATGTTATGCCG 58.135 34.615 0.00 0.00 0.00 5.69
615 618 8.113062 GTCGTGACTTCATAGATTTTCAAGATG 58.887 37.037 0.00 0.00 0.00 2.90
639 642 2.425278 CGACTGCAAGACGTCTGTC 58.575 57.895 20.85 19.63 46.52 3.51
650 653 1.006571 GACCTTTCCGTCGACTGCA 60.007 57.895 14.70 0.00 0.00 4.41
662 665 1.349357 GTTCAGCAGGAGGAGACCTTT 59.651 52.381 0.00 0.00 38.32 3.11
665 668 1.216710 CGTTCAGCAGGAGGAGACC 59.783 63.158 0.00 0.00 0.00 3.85
675 678 2.379634 CCGCGATGTTCGTTCAGCA 61.380 57.895 8.23 0.00 42.81 4.41
676 679 2.395690 CCGCGATGTTCGTTCAGC 59.604 61.111 8.23 0.00 42.81 4.26
690 693 5.066968 TGAATTTATTTCAACCTTCCCGC 57.933 39.130 0.00 0.00 41.38 6.13
692 695 6.850752 TCCTGAATTTATTTCAACCTTCCC 57.149 37.500 0.00 0.00 43.64 3.97
699 702 9.734620 CTCGCATTATTCCTGAATTTATTTCAA 57.265 29.630 0.00 0.00 43.64 2.69
700 703 7.862372 GCTCGCATTATTCCTGAATTTATTTCA 59.138 33.333 0.00 0.00 42.09 2.69
722 725 9.507280 AAGTTATAAATTTGACATTGATGCTCG 57.493 29.630 0.00 0.00 0.00 5.03
728 731 8.592809 AGCCCAAAGTTATAAATTTGACATTGA 58.407 29.630 30.16 0.00 44.19 2.57
733 736 6.071051 TCCCAGCCCAAAGTTATAAATTTGAC 60.071 38.462 30.16 22.97 44.19 3.18
735 738 6.293004 TCCCAGCCCAAAGTTATAAATTTG 57.707 37.500 24.54 24.54 41.95 2.32
736 739 7.070696 GGTATCCCAGCCCAAAGTTATAAATTT 59.929 37.037 5.11 5.11 0.00 1.82
739 742 5.451354 GGTATCCCAGCCCAAAGTTATAAA 58.549 41.667 0.00 0.00 0.00 1.40
742 745 2.158667 CGGTATCCCAGCCCAAAGTTAT 60.159 50.000 0.00 0.00 0.00 1.89
743 746 1.210967 CGGTATCCCAGCCCAAAGTTA 59.789 52.381 0.00 0.00 0.00 2.24
745 748 1.205460 ACGGTATCCCAGCCCAAAGT 61.205 55.000 0.00 0.00 0.00 2.66
747 750 0.322997 CAACGGTATCCCAGCCCAAA 60.323 55.000 0.00 0.00 0.00 3.28
763 768 4.200092 GGTTGGATGATAAGGAGGACAAC 58.800 47.826 0.00 0.00 36.99 3.32
764 769 3.849574 TGGTTGGATGATAAGGAGGACAA 59.150 43.478 0.00 0.00 0.00 3.18
766 771 4.713792 ATGGTTGGATGATAAGGAGGAC 57.286 45.455 0.00 0.00 0.00 3.85
897 904 6.183360 CCATGTGGGTTCTCTTTTTGTTTTTG 60.183 38.462 0.00 0.00 0.00 2.44
926 933 1.446016 AGAAACCAACTACCTGGGCT 58.554 50.000 0.00 0.00 41.16 5.19
942 949 3.497640 GGTAATACGAGAGCGAGCTAGAA 59.502 47.826 0.00 0.00 41.64 2.10
948 955 0.385723 GCGGGTAATACGAGAGCGAG 60.386 60.000 0.00 0.00 41.64 5.03
949 956 0.816825 AGCGGGTAATACGAGAGCGA 60.817 55.000 0.00 0.00 41.64 4.93
950 957 0.870393 TAGCGGGTAATACGAGAGCG 59.130 55.000 0.00 0.00 44.79 5.03
951 958 1.199558 CCTAGCGGGTAATACGAGAGC 59.800 57.143 0.00 0.00 0.00 4.09
975 984 0.975556 GGGTTTGGGGAATGGCGAAT 60.976 55.000 0.00 0.00 0.00 3.34
976 985 1.608046 GGGTTTGGGGAATGGCGAA 60.608 57.895 0.00 0.00 0.00 4.70
977 986 2.036572 GGGTTTGGGGAATGGCGA 59.963 61.111 0.00 0.00 0.00 5.54
978 987 2.037208 AGGGTTTGGGGAATGGCG 59.963 61.111 0.00 0.00 0.00 5.69
979 988 1.685765 GGAGGGTTTGGGGAATGGC 60.686 63.158 0.00 0.00 0.00 4.40
980 989 1.001631 GGGAGGGTTTGGGGAATGG 59.998 63.158 0.00 0.00 0.00 3.16
1007 1016 3.665675 GACCGGTGGCGCTTGAGAT 62.666 63.158 14.63 0.00 0.00 2.75
1008 1017 4.373116 GACCGGTGGCGCTTGAGA 62.373 66.667 14.63 0.00 0.00 3.27
1050 1059 2.325082 ACCACATCCGTTCAAGCGC 61.325 57.895 0.00 0.00 0.00 5.92
1057 1066 2.268076 GCTTGCCACCACATCCGTT 61.268 57.895 0.00 0.00 0.00 4.44
1072 1081 1.041437 GGCCGTATGAGGAGTAGCTT 58.959 55.000 0.00 0.00 0.00 3.74
1085 1094 0.396695 AAATCTCCGAGGAGGCCGTA 60.397 55.000 18.16 0.00 42.20 4.02
1086 1095 1.677637 GAAATCTCCGAGGAGGCCGT 61.678 60.000 18.16 2.80 42.20 5.68
1087 1096 1.068250 GAAATCTCCGAGGAGGCCG 59.932 63.158 18.16 0.00 42.20 6.13
1149 1482 4.404394 TGATTATTCTTACGCTCTGGGACA 59.596 41.667 0.00 0.00 0.00 4.02
1152 1485 5.601662 TCTTGATTATTCTTACGCTCTGGG 58.398 41.667 0.00 0.00 0.00 4.45
1475 1808 0.107945 AACTTGCGCCATCTCTCCTC 60.108 55.000 4.18 0.00 0.00 3.71
1504 1837 1.136828 ACAAGAGCAGGTTGGTGGTA 58.863 50.000 0.00 0.00 0.00 3.25
1529 1862 0.669318 TCCAAGGACGCGACATTGTC 60.669 55.000 27.87 9.16 31.01 3.18
1568 1901 1.290324 CACAGGCACGAGTAGCACT 59.710 57.895 0.00 0.00 0.00 4.40
1597 1930 2.036475 CACCCATCTATCCAAGTCTCGG 59.964 54.545 0.00 0.00 0.00 4.63
1600 1933 1.414181 CGCACCCATCTATCCAAGTCT 59.586 52.381 0.00 0.00 0.00 3.24
1637 1970 2.196742 ATCTCTATCACTTGGGGGCA 57.803 50.000 0.00 0.00 0.00 5.36
1668 2001 1.126846 GAAACTGAATGCGAGGACACG 59.873 52.381 0.00 0.00 0.00 4.49
1670 2003 1.347707 AGGAAACTGAATGCGAGGACA 59.652 47.619 0.00 0.00 41.13 4.02
1702 2035 1.807142 CTTTTGAGGCGGGAAGAACTC 59.193 52.381 0.00 0.00 0.00 3.01
1710 2043 1.880819 ATGCAAGCTTTTGAGGCGGG 61.881 55.000 0.00 0.00 34.52 6.13
1723 2056 8.442632 TCAGATAGAAACCATAAAGATGCAAG 57.557 34.615 0.00 0.00 0.00 4.01
1733 2066 8.877864 AATTGGTTGTTCAGATAGAAACCATA 57.122 30.769 6.42 0.00 43.29 2.74
1748 2081 0.889186 AGCTCGGCGAATTGGTTGTT 60.889 50.000 12.13 0.00 0.00 2.83
1762 2095 2.507992 CCGGAACAGAGCAGCTCG 60.508 66.667 16.99 13.76 35.36 5.03
1818 2151 9.581099 GTGACTTAATTTCTTGAAAACCTTTGA 57.419 29.630 0.00 0.00 0.00 2.69
1822 2155 6.183360 TGCGTGACTTAATTTCTTGAAAACCT 60.183 34.615 0.00 0.00 0.00 3.50
1844 2177 2.693797 ACAAGCTTCTTCAATGTGCG 57.306 45.000 0.00 0.00 0.00 5.34
1877 2210 0.102120 GGATCACCAGAGAGACTGCG 59.898 60.000 0.00 0.00 44.52 5.18
1881 2214 0.457851 CACCGGATCACCAGAGAGAC 59.542 60.000 9.46 0.00 35.59 3.36
1917 2250 1.732259 CCAGTTGGAGATACGCAACAC 59.268 52.381 0.00 0.00 37.39 3.32
1924 2257 7.607991 CCATATGAAATACCCAGTTGGAGATAC 59.392 40.741 3.65 0.00 37.39 2.24
1984 2317 3.748083 TGATGCTTTCACAAGAGAAGCT 58.252 40.909 8.53 0.00 30.57 3.74
2005 2338 5.916318 TCACCAAGACAAAGCAAATGAATT 58.084 33.333 0.00 0.00 0.00 2.17
2030 2363 7.254387 CCGTTGTTGACATTTCAAATTGAATGT 60.254 33.333 17.29 17.29 43.52 2.71
2045 2378 0.878523 CCGAGAAGCCGTTGTTGACA 60.879 55.000 0.00 0.00 0.00 3.58
2046 2379 0.878961 ACCGAGAAGCCGTTGTTGAC 60.879 55.000 0.00 0.00 0.00 3.18
2083 2416 3.394719 GAAACCCGATAGCTCCAGATTC 58.605 50.000 0.00 0.00 0.00 2.52
2105 2438 0.248621 GCAAGGCATACCATTGCGTC 60.249 55.000 4.15 0.00 43.71 5.19
2166 2500 4.843728 TCTGTTAGGAACACATGGGAATC 58.156 43.478 0.00 0.00 36.25 2.52
2192 2526 3.079578 ACTCATGTGCAAGATGAACAGG 58.920 45.455 10.15 0.00 46.72 4.00
2216 2550 8.798402 ACCTTATTTAACGGTCAATTCAATTGA 58.202 29.630 8.85 8.85 46.30 2.57
2320 2654 7.308782 GAATGATTCGTCCTTTTACTGATGT 57.691 36.000 0.00 0.00 0.00 3.06
2344 2678 8.894409 TGACATTAAGAATCAAATTAACAGCG 57.106 30.769 0.00 0.00 0.00 5.18
2345 2679 9.294030 CCTGACATTAAGAATCAAATTAACAGC 57.706 33.333 0.00 0.00 0.00 4.40
2363 2697 9.865321 CTCAATTGTCAAAATATTCCTGACATT 57.135 29.630 23.63 19.41 46.45 2.71
2364 2698 9.028284 ACTCAATTGTCAAAATATTCCTGACAT 57.972 29.630 23.63 13.55 46.45 3.06
2365 2699 8.298854 CACTCAATTGTCAAAATATTCCTGACA 58.701 33.333 21.08 21.08 45.78 3.58
2366 2700 8.514594 TCACTCAATTGTCAAAATATTCCTGAC 58.485 33.333 17.69 17.69 39.93 3.51
2367 2701 8.634335 TCACTCAATTGTCAAAATATTCCTGA 57.366 30.769 5.13 0.00 0.00 3.86
2368 2702 9.297586 CATCACTCAATTGTCAAAATATTCCTG 57.702 33.333 5.13 0.00 0.00 3.86
2382 2716 8.752766 AACTGAATTTAAGCATCACTCAATTG 57.247 30.769 0.00 0.00 0.00 2.32
2463 2797 5.362430 TGACAAGGTTTGCAGGTTAGAAAAT 59.638 36.000 0.00 0.00 0.00 1.82
2467 2801 3.118038 AGTGACAAGGTTTGCAGGTTAGA 60.118 43.478 0.00 0.00 0.00 2.10
2546 2890 2.397044 TCTCCAAACAAGGGGCATTT 57.603 45.000 0.00 0.00 0.00 2.32
2552 2896 2.820197 GGTAAGCTTCTCCAAACAAGGG 59.180 50.000 0.00 0.00 0.00 3.95
2604 2948 5.435686 TCATAAGACAGGCCAGTAAACAT 57.564 39.130 5.01 0.00 0.00 2.71
2610 2954 4.307032 ACAAATCATAAGACAGGCCAGT 57.693 40.909 5.01 1.34 0.00 4.00
2615 2959 8.180267 CAGAAGCTAAACAAATCATAAGACAGG 58.820 37.037 0.00 0.00 0.00 4.00
2618 2962 8.721478 TGTCAGAAGCTAAACAAATCATAAGAC 58.279 33.333 0.00 0.00 0.00 3.01
2622 2966 8.791327 TCATGTCAGAAGCTAAACAAATCATA 57.209 30.769 0.00 0.00 0.00 2.15
2626 2970 8.345724 AGATTCATGTCAGAAGCTAAACAAAT 57.654 30.769 0.00 0.00 41.98 2.32
2641 2985 3.679389 ACAGGACCACAAGATTCATGTC 58.321 45.455 0.00 0.00 28.46 3.06
2683 3027 3.322318 GAGCTGCCCCTCTTTCGCT 62.322 63.158 0.00 0.00 0.00 4.93
2685 3029 2.510238 CGAGCTGCCCCTCTTTCG 60.510 66.667 0.00 0.00 0.00 3.46
2731 3075 3.056821 GGCACTGGAAAGTATTTTGGTCC 60.057 47.826 0.00 0.00 39.27 4.46
2748 3092 1.141657 TGAGCTTCAACTTCAGGCACT 59.858 47.619 0.00 0.00 43.88 4.40
2754 3098 6.203530 CACAACTTCTATGAGCTTCAACTTCA 59.796 38.462 0.00 0.00 0.00 3.02
2765 3109 6.322456 TCCTCCTCATACACAACTTCTATGAG 59.678 42.308 6.85 6.85 41.66 2.90
2782 3126 1.273781 TGGTGATCATGGTCCTCCTCA 60.274 52.381 15.27 0.88 34.23 3.86
2817 3161 1.214305 CCTCCTCCCAATTCCCCACA 61.214 60.000 0.00 0.00 0.00 4.17
2873 3217 6.866480 ACGCATGATGAAAGTTTTAATCCAT 58.134 32.000 0.00 0.00 28.56 3.41
2895 3239 2.816689 TCATGGCGAAGTTACCATACG 58.183 47.619 9.09 0.57 44.97 3.06
2907 3251 0.460109 CACAACGAGGATCATGGCGA 60.460 55.000 0.00 0.00 33.17 5.54
2910 3254 2.385013 TGACACAACGAGGATCATGG 57.615 50.000 0.00 0.00 33.17 3.66
2925 3269 8.364142 CCAATAAACAAAGAATAACCCTTGACA 58.636 33.333 0.00 0.00 0.00 3.58
2929 3273 9.596308 AGTACCAATAAACAAAGAATAACCCTT 57.404 29.630 0.00 0.00 0.00 3.95
2981 3325 7.607250 TGTCAACAACTTTTATTTCACCTGTT 58.393 30.769 0.00 0.00 0.00 3.16
2983 3327 7.169645 CCATGTCAACAACTTTTATTTCACCTG 59.830 37.037 0.00 0.00 0.00 4.00
2984 3328 7.147742 ACCATGTCAACAACTTTTATTTCACCT 60.148 33.333 0.00 0.00 0.00 4.00
2985 3329 6.983890 ACCATGTCAACAACTTTTATTTCACC 59.016 34.615 0.00 0.00 0.00 4.02
2991 3335 9.744468 GAAGTTTACCATGTCAACAACTTTTAT 57.256 29.630 0.00 0.00 35.19 1.40
2992 3336 8.962679 AGAAGTTTACCATGTCAACAACTTTTA 58.037 29.630 0.00 0.00 35.19 1.52
3032 3376 1.134401 CCCCATTCGATGTGCTGTAGT 60.134 52.381 0.00 0.00 0.00 2.73
3045 3389 5.859205 AATTCAACTTCTATGCCCCATTC 57.141 39.130 0.00 0.00 0.00 2.67
3082 3426 0.891904 GGCAGTCCAAAAGCGGGTAA 60.892 55.000 0.00 0.00 0.00 2.85
3095 3439 6.260936 ACATACTAGCAACATATTTGGCAGTC 59.739 38.462 0.00 0.00 0.00 3.51
3099 3443 9.398170 CATAAACATACTAGCAACATATTTGGC 57.602 33.333 0.00 0.00 0.00 4.52
3109 3453 9.777297 TCAGATTATGCATAAACATACTAGCAA 57.223 29.630 22.37 0.00 35.45 3.91
3110 3454 9.208022 GTCAGATTATGCATAAACATACTAGCA 57.792 33.333 22.37 0.00 32.32 3.49
3111 3455 8.376203 CGTCAGATTATGCATAAACATACTAGC 58.624 37.037 22.37 0.62 32.32 3.42
3112 3456 8.376203 GCGTCAGATTATGCATAAACATACTAG 58.624 37.037 22.37 11.19 32.32 2.57
3136 3480 3.744942 AGCATCAGCATTATAACAGAGCG 59.255 43.478 0.00 0.00 45.49 5.03
3151 3495 5.004440 CGCATCTTCAATTCAAAAGCATCAG 59.996 40.000 0.00 0.00 0.00 2.90
3162 3506 1.133025 CCACCACCGCATCTTCAATTC 59.867 52.381 0.00 0.00 0.00 2.17
3166 3510 1.199615 TATCCACCACCGCATCTTCA 58.800 50.000 0.00 0.00 0.00 3.02
3193 3537 8.755696 AAAAATAAGAATGCGCTAACAATTGA 57.244 26.923 13.59 0.00 0.00 2.57
3195 3539 8.863049 CAGAAAAATAAGAATGCGCTAACAATT 58.137 29.630 9.73 0.00 0.00 2.32
3196 3540 7.489113 CCAGAAAAATAAGAATGCGCTAACAAT 59.511 33.333 9.73 0.00 0.00 2.71
3197 3541 6.806249 CCAGAAAAATAAGAATGCGCTAACAA 59.194 34.615 9.73 0.00 0.00 2.83
3198 3542 6.150307 TCCAGAAAAATAAGAATGCGCTAACA 59.850 34.615 9.73 0.00 0.00 2.41
3199 3543 6.551736 TCCAGAAAAATAAGAATGCGCTAAC 58.448 36.000 9.73 0.00 0.00 2.34
3200 3544 6.751514 TCCAGAAAAATAAGAATGCGCTAA 57.248 33.333 9.73 0.00 0.00 3.09
3201 3545 6.751514 TTCCAGAAAAATAAGAATGCGCTA 57.248 33.333 9.73 0.00 0.00 4.26
3202 3546 5.643379 TTCCAGAAAAATAAGAATGCGCT 57.357 34.783 9.73 0.00 0.00 5.92
3203 3547 6.366061 ACTTTTCCAGAAAAATAAGAATGCGC 59.634 34.615 0.00 0.00 39.49 6.09
3204 3548 7.873739 ACTTTTCCAGAAAAATAAGAATGCG 57.126 32.000 6.98 0.00 39.49 4.73
3205 3549 8.498358 CCAACTTTTCCAGAAAAATAAGAATGC 58.502 33.333 6.98 0.00 39.49 3.56
3206 3550 8.498358 GCCAACTTTTCCAGAAAAATAAGAATG 58.502 33.333 6.98 1.94 39.49 2.67
3207 3551 7.384932 CGCCAACTTTTCCAGAAAAATAAGAAT 59.615 33.333 6.98 0.00 39.49 2.40
3208 3552 6.699642 CGCCAACTTTTCCAGAAAAATAAGAA 59.300 34.615 6.98 0.00 39.49 2.52
3209 3553 6.212955 CGCCAACTTTTCCAGAAAAATAAGA 58.787 36.000 6.98 0.00 39.49 2.10
3210 3554 5.107491 GCGCCAACTTTTCCAGAAAAATAAG 60.107 40.000 0.00 0.00 39.49 1.73
3211 3555 4.747605 GCGCCAACTTTTCCAGAAAAATAA 59.252 37.500 0.00 0.00 39.49 1.40
3212 3556 4.038642 AGCGCCAACTTTTCCAGAAAAATA 59.961 37.500 2.29 0.00 39.49 1.40
3213 3557 3.130633 GCGCCAACTTTTCCAGAAAAAT 58.869 40.909 0.00 0.00 39.49 1.82
3214 3558 2.167487 AGCGCCAACTTTTCCAGAAAAA 59.833 40.909 2.29 0.00 39.49 1.94
3215 3559 1.754226 AGCGCCAACTTTTCCAGAAAA 59.246 42.857 2.29 5.51 37.90 2.29
3216 3560 1.398692 AGCGCCAACTTTTCCAGAAA 58.601 45.000 2.29 0.00 0.00 2.52
3217 3561 2.264005 TAGCGCCAACTTTTCCAGAA 57.736 45.000 2.29 0.00 0.00 3.02
3218 3562 2.151202 CTTAGCGCCAACTTTTCCAGA 58.849 47.619 2.29 0.00 0.00 3.86
3219 3563 1.880027 ACTTAGCGCCAACTTTTCCAG 59.120 47.619 2.29 0.00 0.00 3.86
3220 3564 1.606668 CACTTAGCGCCAACTTTTCCA 59.393 47.619 2.29 0.00 0.00 3.53
3221 3565 1.607148 ACACTTAGCGCCAACTTTTCC 59.393 47.619 2.29 0.00 0.00 3.13
3222 3566 2.350484 GGACACTTAGCGCCAACTTTTC 60.350 50.000 2.29 0.00 0.00 2.29
3235 3579 7.670605 ACTATAGTTTGCATAGGGACACTTA 57.329 36.000 0.00 0.00 31.44 2.24
3264 3608 6.314400 GTGCCAGATATTGTTCGGTTTTAGTA 59.686 38.462 0.00 0.00 0.00 1.82
3271 3615 2.779755 TGTGCCAGATATTGTTCGGT 57.220 45.000 0.00 0.00 0.00 4.69
3284 3628 8.975827 AAGACTTGTTCTACACAAATTGTGCCA 61.976 37.037 24.32 12.52 45.11 4.92
3331 3675 8.190122 GTGATATGCATACACATTTCTTTCCAA 58.810 33.333 23.21 0.00 35.06 3.53
3333 3677 7.706159 TGTGATATGCATACACATTTCTTTCC 58.294 34.615 25.27 10.82 39.17 3.13
3378 3723 8.308931 ACATTCTTGTGTAAATCAGCATCATTT 58.691 29.630 0.00 0.00 33.85 2.32
3382 3727 6.845302 TGACATTCTTGTGTAAATCAGCATC 58.155 36.000 0.00 0.00 35.79 3.91
3391 3736 6.262944 AGAGTGCAAATGACATTCTTGTGTAA 59.737 34.615 0.05 0.00 35.79 2.41
3405 3750 7.601073 TCACATTCTAACTAGAGTGCAAATG 57.399 36.000 8.67 0.00 41.93 2.32
3437 3782 4.011023 TCACTAGCTCACTCCACTCTTAC 58.989 47.826 0.00 0.00 0.00 2.34
3439 3784 2.823154 GTCACTAGCTCACTCCACTCTT 59.177 50.000 0.00 0.00 0.00 2.85
3440 3785 2.041081 AGTCACTAGCTCACTCCACTCT 59.959 50.000 0.00 0.00 0.00 3.24
3447 3792 3.384789 TGTTTGACAGTCACTAGCTCACT 59.615 43.478 1.52 0.00 0.00 3.41
3462 3807 6.042143 ACATCATTCCACAGTTTTGTTTGAC 58.958 36.000 0.00 0.00 34.62 3.18
3499 3844 9.737427 TCTTAATTTCGTTTGCTGATACAAAAA 57.263 25.926 0.00 0.00 40.99 1.94
3525 3870 6.080969 ACGGAGGGAGTATATGATACAGAT 57.919 41.667 0.00 0.00 0.00 2.90
3527 3872 4.641094 GGACGGAGGGAGTATATGATACAG 59.359 50.000 0.00 0.00 0.00 2.74
3528 3873 4.569228 GGGACGGAGGGAGTATATGATACA 60.569 50.000 0.00 0.00 0.00 2.29
3529 3874 3.952967 GGGACGGAGGGAGTATATGATAC 59.047 52.174 0.00 0.00 0.00 2.24
3561 3906 3.402628 AGTGTAGTGTCCGAAATGCTT 57.597 42.857 0.00 0.00 0.00 3.91
3563 3908 3.846360 ACTAGTGTAGTGTCCGAAATGC 58.154 45.455 0.00 0.00 37.69 3.56
3574 3919 8.732746 AAAAATGTTTCTGACACTAGTGTAGT 57.267 30.769 27.98 7.64 45.05 2.73
3589 3934 9.931210 CTCCGTCCTGTAATATAAAAATGTTTC 57.069 33.333 0.00 0.00 0.00 2.78
3594 3939 7.072076 ACTCCCTCCGTCCTGTAATATAAAAAT 59.928 37.037 0.00 0.00 0.00 1.82
3606 3951 2.660670 ATACTACTCCCTCCGTCCTG 57.339 55.000 0.00 0.00 0.00 3.86
3607 3952 5.336491 AATTATACTACTCCCTCCGTCCT 57.664 43.478 0.00 0.00 0.00 3.85
3612 3957 5.349809 GCGCATAATTATACTACTCCCTCC 58.650 45.833 0.30 0.00 0.00 4.30
3621 3966 5.360591 GCTATCCAGGCGCATAATTATACT 58.639 41.667 10.83 0.00 0.00 2.12
3622 3967 4.209288 CGCTATCCAGGCGCATAATTATAC 59.791 45.833 10.83 0.00 45.83 1.47
3623 3968 4.368315 CGCTATCCAGGCGCATAATTATA 58.632 43.478 10.83 0.00 45.83 0.98
3635 3980 3.643763 GAAGTGTATGTCGCTATCCAGG 58.356 50.000 0.00 0.00 35.67 4.45
3651 3999 1.999735 ACGACATGCATAACCGAAGTG 59.000 47.619 17.56 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.