Multiple sequence alignment - TraesCS2D01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G306400 chr2D 100.000 6384 0 0 1 6384 392166118 392159735 0.000000e+00 11790.0
1 TraesCS2D01G306400 chr2D 95.109 184 5 1 3454 3633 392162487 392162304 2.910000e-73 287.0
2 TraesCS2D01G306400 chr2D 95.109 184 5 1 3632 3815 392162665 392162486 2.910000e-73 287.0
3 TraesCS2D01G306400 chr2A 97.068 4366 97 15 1 4345 529957976 529953621 0.000000e+00 7324.0
4 TraesCS2D01G306400 chr2A 95.938 1354 39 8 4445 5795 529953620 529952280 0.000000e+00 2182.0
5 TraesCS2D01G306400 chr2A 94.022 184 7 1 3632 3815 529954510 529954331 6.300000e-70 276.0
6 TraesCS2D01G306400 chr2A 93.583 187 6 1 3454 3634 529954332 529954146 2.270000e-69 274.0
7 TraesCS2D01G306400 chr2A 90.840 131 8 4 5923 6051 75116417 75116545 8.510000e-39 172.0
8 TraesCS2D01G306400 chr2A 88.393 112 13 0 4340 4451 559118406 559118517 1.120000e-27 135.0
9 TraesCS2D01G306400 chr2B 93.124 2036 96 21 1 2014 464292740 464290727 0.000000e+00 2944.0
10 TraesCS2D01G306400 chr2B 96.182 1650 47 6 1998 3634 464290625 464288979 0.000000e+00 2684.0
11 TraesCS2D01G306400 chr2B 93.392 802 33 7 3632 4421 464289159 464288366 0.000000e+00 1170.0
12 TraesCS2D01G306400 chr2B 96.053 684 26 1 5153 5835 464287392 464286709 0.000000e+00 1112.0
13 TraesCS2D01G306400 chr2B 91.438 584 34 6 4319 4892 464288374 464287797 0.000000e+00 787.0
14 TraesCS2D01G306400 chr2B 89.046 283 20 9 4886 5161 464287697 464287419 2.200000e-89 340.0
15 TraesCS2D01G306400 chrUn 100.000 384 0 0 3860 4243 480835893 480836276 0.000000e+00 710.0
16 TraesCS2D01G306400 chr3D 94.444 342 19 0 6043 6384 66299491 66299150 1.580000e-145 527.0
17 TraesCS2D01G306400 chr3D 92.424 264 20 0 6043 6306 104130052 104129789 1.680000e-100 377.0
18 TraesCS2D01G306400 chr3D 96.364 110 3 1 5830 5939 104130158 104130050 5.090000e-41 180.0
19 TraesCS2D01G306400 chr7D 95.652 115 4 1 5930 6044 21093720 21093607 3.930000e-42 183.0
20 TraesCS2D01G306400 chr6A 95.652 115 4 1 5937 6051 14134071 14133958 3.930000e-42 183.0
21 TraesCS2D01G306400 chr6A 100.000 30 0 0 5869 5898 39429932 39429961 8.940000e-04 56.5
22 TraesCS2D01G306400 chr5A 95.652 115 4 1 5937 6051 16500061 16499948 3.930000e-42 183.0
23 TraesCS2D01G306400 chr5A 94.167 120 4 3 5934 6051 547790016 547790134 5.090000e-41 180.0
24 TraesCS2D01G306400 chr5A 92.157 102 7 1 4349 4450 690948225 690948325 6.670000e-30 143.0
25 TraesCS2D01G306400 chr3B 96.429 112 3 1 5935 6046 12156859 12156969 3.930000e-42 183.0
26 TraesCS2D01G306400 chr6D 94.167 120 6 1 5928 6047 468641008 468640890 1.410000e-41 182.0
27 TraesCS2D01G306400 chr6D 90.090 111 11 0 4344 4454 36072802 36072912 1.860000e-30 145.0
28 TraesCS2D01G306400 chr3A 90.977 133 8 4 5923 6053 488771193 488771323 6.580000e-40 176.0
29 TraesCS2D01G306400 chr4D 90.977 133 7 4 5920 6049 8411301 8411431 2.370000e-39 174.0
30 TraesCS2D01G306400 chr4D 91.892 111 9 0 4343 4453 64546835 64546725 8.570000e-34 156.0
31 TraesCS2D01G306400 chr1B 92.661 109 6 2 4343 4450 301273395 301273502 8.570000e-34 156.0
32 TraesCS2D01G306400 chr1B 83.333 108 14 4 5835 5939 31148911 31148805 5.270000e-16 97.1
33 TraesCS2D01G306400 chr4A 92.308 104 7 1 5836 5939 602241643 602241541 5.160000e-31 147.0
34 TraesCS2D01G306400 chr1A 90.826 109 8 2 4344 4451 352174093 352174200 1.860000e-30 145.0
35 TraesCS2D01G306400 chr1D 90.741 108 8 2 4344 4450 100459091 100458985 6.670000e-30 143.0
36 TraesCS2D01G306400 chr7B 90.654 107 8 2 4345 4450 216938228 216938333 2.400000e-29 141.0
37 TraesCS2D01G306400 chr7B 79.268 82 14 3 5837 5915 167008842 167008923 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G306400 chr2D 392159735 392166118 6383 True 4121.333333 11790 96.739333 1 6384 3 chr2D.!!$R1 6383
1 TraesCS2D01G306400 chr2A 529952280 529957976 5696 True 2514.000000 7324 95.152750 1 5795 4 chr2A.!!$R1 5794
2 TraesCS2D01G306400 chr2B 464286709 464292740 6031 True 1506.166667 2944 93.205833 1 5835 6 chr2B.!!$R1 5834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 988 0.380378 TTTGCAGGTGTTGAACGAGC 59.620 50.000 0.00 0.00 0.00 5.03 F
1701 1730 0.394938 TGCTGGTAAGGAGTTTCGCA 59.605 50.000 0.00 0.00 0.00 5.10 F
1898 1927 1.160137 GGCAATCTATCCATGCGACC 58.840 55.000 0.00 0.00 40.94 4.79 F
3599 3759 2.189594 TTGCATCTGGTGAGAACCTG 57.810 50.000 0.00 0.00 0.00 4.00 F
4361 4630 1.077212 TACTCCCTCCGTCCGGAAG 60.077 63.158 5.23 8.49 44.66 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 2377 3.079578 CCTTCAGAATCTTGCAAGCAGA 58.920 45.455 21.99 5.18 0.00 4.26 R
3436 3596 2.821378 CTGTTGCCACTTCCATGATCAA 59.179 45.455 0.00 0.00 0.00 2.57 R
3711 3871 2.680339 GGAGCATTTTTCCTCTCCTTCG 59.320 50.000 0.00 0.00 41.35 3.79 R
4863 5176 0.326595 TTGGGCGACAGCTAATTCCA 59.673 50.000 0.00 0.00 44.37 3.53 R
6050 6473 0.035056 GCCACAAGCCTATCACCAGT 60.035 55.000 0.00 0.00 34.35 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 32 2.891191 TTGATGGGTTAGTGGGTTCC 57.109 50.000 0.00 0.00 0.00 3.62
56 61 2.103263 GCGAGGATGATTTCTAGGTGGT 59.897 50.000 0.00 0.00 0.00 4.16
343 350 1.028130 TTGTTGAAAGCGGCATGACA 58.972 45.000 0.00 0.00 0.00 3.58
424 440 1.262950 TGTTGGATTTCAAGTGTCGCG 59.737 47.619 0.00 0.00 35.80 5.87
453 471 5.183331 GGTGATGTTATAGATCTACGGCTGA 59.817 44.000 4.10 0.00 0.00 4.26
454 472 6.318628 GTGATGTTATAGATCTACGGCTGAG 58.681 44.000 4.10 0.00 0.00 3.35
460 478 2.672098 AGATCTACGGCTGAGGTGAAT 58.328 47.619 0.00 0.00 0.00 2.57
470 488 4.712476 GGCTGAGGTGAATGAATATGAGT 58.288 43.478 0.00 0.00 0.00 3.41
509 527 4.308899 AGTGAGGATTATCGTGTACTGC 57.691 45.455 0.00 0.00 0.00 4.40
558 577 7.823745 ACAGAAAGATTAACACAAGGACATT 57.176 32.000 0.00 0.00 0.00 2.71
760 782 6.183360 GGAGTTGAAGTGATGTTATTCTTCCG 60.183 42.308 0.00 0.00 36.47 4.30
840 864 9.884465 GAACTCATGCTAATATCAATTAACACC 57.116 33.333 0.00 0.00 28.95 4.16
873 897 1.952296 CTGCTCCTTGTCTTGTGCTTT 59.048 47.619 0.00 0.00 0.00 3.51
927 951 4.006319 GAGTTTGTCCTGAAGGAGAATGG 58.994 47.826 9.54 0.00 45.35 3.16
964 988 0.380378 TTTGCAGGTGTTGAACGAGC 59.620 50.000 0.00 0.00 0.00 5.03
1308 1337 3.252458 ACCGTAAAAGAGTTTGGACATGC 59.748 43.478 0.00 0.00 0.00 4.06
1553 1582 3.172229 TGGCCTTTGAAAAAGAAACGG 57.828 42.857 3.32 0.00 0.00 4.44
1656 1685 9.467258 CTGTTTGTTTGACATTGATTATCTGTT 57.533 29.630 0.00 0.00 0.00 3.16
1701 1730 0.394938 TGCTGGTAAGGAGTTTCGCA 59.605 50.000 0.00 0.00 0.00 5.10
1716 1745 5.222631 AGTTTCGCATGTTTGAGATTTTCC 58.777 37.500 0.00 0.00 31.40 3.13
1836 1865 8.710835 TCCATTGATTCATCACATTTGATTTG 57.289 30.769 0.00 0.00 40.79 2.32
1898 1927 1.160137 GGCAATCTATCCATGCGACC 58.840 55.000 0.00 0.00 40.94 4.79
2228 2377 3.260884 TGCTAAAAGAGATGGTTCGGAGT 59.739 43.478 0.00 0.00 0.00 3.85
2252 2401 3.005050 TGCTTGCAAGATTCTGAAGGTTG 59.995 43.478 30.39 9.17 0.00 3.77
2435 2584 4.464244 ACTCTCCATGGATCGTACATATGG 59.536 45.833 16.63 0.00 39.66 2.74
2521 2670 8.622948 TTTCTTGTTTCCTTTATTCTCTCTCC 57.377 34.615 0.00 0.00 0.00 3.71
3436 3596 5.542251 AGAAAGAGTAAGGAAGAGCAGAAGT 59.458 40.000 0.00 0.00 0.00 3.01
3599 3759 2.189594 TTGCATCTGGTGAGAACCTG 57.810 50.000 0.00 0.00 0.00 4.00
3669 3829 4.558226 ATCAGACAAATGCTGTACAGGA 57.442 40.909 23.95 22.09 38.84 3.86
3711 3871 1.494824 CAGCTTGTGGCAAAAGAAGC 58.505 50.000 21.55 15.85 44.55 3.86
3727 3887 4.293662 AGAAGCGAAGGAGAGGAAAAAT 57.706 40.909 0.00 0.00 0.00 1.82
3781 3941 2.419297 GCATCTGGTGAGAACCTACCTG 60.419 54.545 0.00 0.00 37.84 4.00
4352 4621 7.463431 TCTTAGAATAGAGATGTACTCCCTCC 58.537 42.308 0.00 0.00 45.96 4.30
4356 4625 1.133730 AGAGATGTACTCCCTCCGTCC 60.134 57.143 0.00 0.00 45.96 4.79
4361 4630 1.077212 TACTCCCTCCGTCCGGAAG 60.077 63.158 5.23 8.49 44.66 3.46
4414 4684 6.448006 ACGTATTTCAGTGCTAGATACATCC 58.552 40.000 0.00 0.00 0.00 3.51
4432 4702 2.333926 TCCGTTTGAGCGACAGTTATG 58.666 47.619 0.00 0.00 0.00 1.90
4622 4900 6.435277 AGACCAATGTGAATGATAGTGCTTTT 59.565 34.615 0.00 0.00 0.00 2.27
4741 5020 3.233507 ACTTGGCACCAGATTTTGTGAT 58.766 40.909 0.00 0.00 34.37 3.06
4780 5059 3.026694 AGGCCATGCTGACCTATTTTTC 58.973 45.455 5.01 0.00 29.98 2.29
4830 5109 2.688477 TGCCCTTTGATTCCTTTGGTT 58.312 42.857 0.00 0.00 0.00 3.67
4863 5176 5.446860 TCTCATTACATACTTCCTCCGTCT 58.553 41.667 0.00 0.00 0.00 4.18
4872 5185 2.168728 ACTTCCTCCGTCTGGAATTAGC 59.831 50.000 0.00 0.00 45.87 3.09
4899 5212 4.718961 GCCCAAATGGATGTATCTACACT 58.281 43.478 0.00 0.00 34.96 3.55
4900 5213 5.510690 CGCCCAAATGGATGTATCTACACTA 60.511 44.000 0.00 0.00 34.96 2.74
5081 5467 2.098934 ACTTGCGCATGTTTTTCTGTCA 59.901 40.909 21.97 0.00 0.00 3.58
5114 5500 1.107114 TTCTTTTGCGTTGCCCTTGA 58.893 45.000 0.00 0.00 0.00 3.02
5145 5532 2.573462 TGAGGACAAGAGCTGGCTTTAT 59.427 45.455 0.00 0.00 31.36 1.40
5412 5835 9.425577 GATAGATGGATAGGCTACTTTTTGTAC 57.574 37.037 0.00 0.00 0.00 2.90
5507 5930 0.671472 TCGAACTGGAGCTGCATGTG 60.671 55.000 8.91 0.00 0.00 3.21
5583 6006 1.474077 GGCGATGCTGAAAACCAATCT 59.526 47.619 0.00 0.00 0.00 2.40
5607 6030 8.982723 TCTTTAGCTAGGAATCTGTTCTATGTT 58.017 33.333 0.00 0.00 34.68 2.71
5621 6044 5.473162 TGTTCTATGTTGTGGATTTGACAGG 59.527 40.000 0.00 0.00 0.00 4.00
5651 6074 4.996758 GCCCTTTCACAAGTGCAATTATTT 59.003 37.500 0.00 0.00 33.80 1.40
5664 6087 8.159344 AGTGCAATTATTTTCTAGGAGTATGC 57.841 34.615 0.00 0.00 0.00 3.14
5705 6128 1.955778 CTTTGTTGGATGTGTGCTGGA 59.044 47.619 0.00 0.00 0.00 3.86
5777 6200 0.175760 GTAGACGGCCATGCTCAGAA 59.824 55.000 2.24 0.00 0.00 3.02
5782 6205 1.375908 GGCCATGCTCAGAACGTGA 60.376 57.895 0.00 0.00 0.00 4.35
5831 6254 2.412716 CGGTCATGTTGGTTGTTCGATG 60.413 50.000 0.00 0.00 0.00 3.84
5835 6258 2.631160 TGTTGGTTGTTCGATGGAGT 57.369 45.000 0.00 0.00 0.00 3.85
5836 6259 2.925724 TGTTGGTTGTTCGATGGAGTT 58.074 42.857 0.00 0.00 0.00 3.01
5837 6260 3.283751 TGTTGGTTGTTCGATGGAGTTT 58.716 40.909 0.00 0.00 0.00 2.66
5838 6261 3.697045 TGTTGGTTGTTCGATGGAGTTTT 59.303 39.130 0.00 0.00 0.00 2.43
5839 6262 4.158764 TGTTGGTTGTTCGATGGAGTTTTT 59.841 37.500 0.00 0.00 0.00 1.94
5863 6286 5.545658 TTTTGAAAGATCCAGCGTGATAC 57.454 39.130 0.00 0.00 0.00 2.24
5864 6287 4.471904 TTGAAAGATCCAGCGTGATACT 57.528 40.909 0.00 0.00 0.00 2.12
5865 6288 3.785486 TGAAAGATCCAGCGTGATACTG 58.215 45.455 0.00 0.00 34.82 2.74
5871 6294 3.441244 CAGCGTGATACTGGCTTCA 57.559 52.632 0.00 0.00 34.13 3.02
5872 6295 1.945387 CAGCGTGATACTGGCTTCAT 58.055 50.000 0.00 0.00 34.13 2.57
5873 6296 2.283298 CAGCGTGATACTGGCTTCATT 58.717 47.619 0.00 0.00 34.13 2.57
5874 6297 2.031314 CAGCGTGATACTGGCTTCATTG 59.969 50.000 0.00 0.00 34.13 2.82
5875 6298 2.093500 AGCGTGATACTGGCTTCATTGA 60.093 45.455 0.00 0.00 31.91 2.57
5876 6299 2.874701 GCGTGATACTGGCTTCATTGAT 59.125 45.455 0.00 0.00 0.00 2.57
5877 6300 3.313526 GCGTGATACTGGCTTCATTGATT 59.686 43.478 0.00 0.00 0.00 2.57
5878 6301 4.201950 GCGTGATACTGGCTTCATTGATTT 60.202 41.667 0.00 0.00 0.00 2.17
5879 6302 5.007626 GCGTGATACTGGCTTCATTGATTTA 59.992 40.000 0.00 0.00 0.00 1.40
5880 6303 6.653183 CGTGATACTGGCTTCATTGATTTAG 58.347 40.000 0.00 0.00 0.00 1.85
5881 6304 6.433766 GTGATACTGGCTTCATTGATTTAGC 58.566 40.000 0.98 0.98 0.00 3.09
5882 6305 6.038603 GTGATACTGGCTTCATTGATTTAGCA 59.961 38.462 10.21 0.00 35.36 3.49
5883 6306 4.978083 ACTGGCTTCATTGATTTAGCAG 57.022 40.909 10.21 8.20 35.36 4.24
5884 6307 4.592942 ACTGGCTTCATTGATTTAGCAGA 58.407 39.130 10.21 0.00 35.36 4.26
5885 6308 5.012239 ACTGGCTTCATTGATTTAGCAGAA 58.988 37.500 10.21 0.00 35.36 3.02
5886 6309 5.125097 ACTGGCTTCATTGATTTAGCAGAAG 59.875 40.000 10.21 7.24 35.36 2.85
5887 6310 5.255687 TGGCTTCATTGATTTAGCAGAAGA 58.744 37.500 10.21 0.00 35.67 2.87
5888 6311 5.356190 TGGCTTCATTGATTTAGCAGAAGAG 59.644 40.000 10.21 0.00 35.67 2.85
5889 6312 5.587844 GGCTTCATTGATTTAGCAGAAGAGA 59.412 40.000 10.21 0.00 35.67 3.10
5890 6313 6.238429 GGCTTCATTGATTTAGCAGAAGAGAG 60.238 42.308 10.21 0.00 35.67 3.20
5891 6314 6.674694 TTCATTGATTTAGCAGAAGAGAGC 57.325 37.500 0.00 0.00 0.00 4.09
5892 6315 4.807834 TCATTGATTTAGCAGAAGAGAGCG 59.192 41.667 0.00 0.00 35.48 5.03
5893 6316 4.456280 TTGATTTAGCAGAAGAGAGCGA 57.544 40.909 0.00 0.00 35.48 4.93
5894 6317 3.775202 TGATTTAGCAGAAGAGAGCGAC 58.225 45.455 0.00 0.00 35.48 5.19
5895 6318 3.193479 TGATTTAGCAGAAGAGAGCGACA 59.807 43.478 0.00 0.00 35.48 4.35
5896 6319 3.660501 TTTAGCAGAAGAGAGCGACAA 57.339 42.857 0.00 0.00 35.48 3.18
5897 6320 3.660501 TTAGCAGAAGAGAGCGACAAA 57.339 42.857 0.00 0.00 35.48 2.83
5898 6321 2.758736 AGCAGAAGAGAGCGACAAAT 57.241 45.000 0.00 0.00 35.48 2.32
5899 6322 2.344950 AGCAGAAGAGAGCGACAAATG 58.655 47.619 0.00 0.00 35.48 2.32
5900 6323 2.028658 AGCAGAAGAGAGCGACAAATGA 60.029 45.455 0.00 0.00 35.48 2.57
5901 6324 2.348059 GCAGAAGAGAGCGACAAATGAG 59.652 50.000 0.00 0.00 0.00 2.90
5902 6325 2.928757 CAGAAGAGAGCGACAAATGAGG 59.071 50.000 0.00 0.00 0.00 3.86
5903 6326 2.564947 AGAAGAGAGCGACAAATGAGGT 59.435 45.455 0.00 0.00 0.00 3.85
5904 6327 3.007398 AGAAGAGAGCGACAAATGAGGTT 59.993 43.478 0.00 0.00 0.00 3.50
5905 6328 2.693069 AGAGAGCGACAAATGAGGTTG 58.307 47.619 0.00 0.00 34.52 3.77
5906 6329 2.300152 AGAGAGCGACAAATGAGGTTGA 59.700 45.455 0.00 0.00 32.59 3.18
5907 6330 3.055530 AGAGAGCGACAAATGAGGTTGAT 60.056 43.478 0.00 0.00 32.59 2.57
5908 6331 3.265791 AGAGCGACAAATGAGGTTGATC 58.734 45.455 0.00 0.00 35.74 2.92
5909 6332 3.002791 GAGCGACAAATGAGGTTGATCA 58.997 45.455 0.00 0.00 35.61 2.92
5910 6333 3.411446 AGCGACAAATGAGGTTGATCAA 58.589 40.909 3.38 3.38 31.76 2.57
5911 6334 3.438087 AGCGACAAATGAGGTTGATCAAG 59.562 43.478 8.80 0.00 31.76 3.02
5912 6335 3.189287 GCGACAAATGAGGTTGATCAAGT 59.811 43.478 8.80 0.00 31.76 3.16
5913 6336 4.715896 CGACAAATGAGGTTGATCAAGTG 58.284 43.478 8.80 1.71 31.76 3.16
5914 6337 4.452114 CGACAAATGAGGTTGATCAAGTGA 59.548 41.667 8.80 0.00 31.76 3.41
5915 6338 5.122869 CGACAAATGAGGTTGATCAAGTGAT 59.877 40.000 8.80 0.00 37.51 3.06
5925 6348 2.795231 ATCAAGTGATCAGGTGGTGG 57.205 50.000 0.00 0.00 0.00 4.61
5926 6349 1.728323 TCAAGTGATCAGGTGGTGGA 58.272 50.000 0.00 0.00 0.00 4.02
5927 6350 2.054021 TCAAGTGATCAGGTGGTGGAA 58.946 47.619 0.00 0.00 0.00 3.53
5928 6351 2.441375 TCAAGTGATCAGGTGGTGGAAA 59.559 45.455 0.00 0.00 0.00 3.13
5929 6352 3.117701 TCAAGTGATCAGGTGGTGGAAAA 60.118 43.478 0.00 0.00 0.00 2.29
5930 6353 3.146104 AGTGATCAGGTGGTGGAAAAG 57.854 47.619 0.00 0.00 0.00 2.27
5931 6354 2.711009 AGTGATCAGGTGGTGGAAAAGA 59.289 45.455 0.00 0.00 0.00 2.52
5932 6355 3.138283 AGTGATCAGGTGGTGGAAAAGAA 59.862 43.478 0.00 0.00 0.00 2.52
5933 6356 3.888930 GTGATCAGGTGGTGGAAAAGAAA 59.111 43.478 0.00 0.00 0.00 2.52
5934 6357 4.340950 GTGATCAGGTGGTGGAAAAGAAAA 59.659 41.667 0.00 0.00 0.00 2.29
5935 6358 5.011023 GTGATCAGGTGGTGGAAAAGAAAAT 59.989 40.000 0.00 0.00 0.00 1.82
5936 6359 5.602145 TGATCAGGTGGTGGAAAAGAAAATT 59.398 36.000 0.00 0.00 0.00 1.82
5937 6360 6.780031 TGATCAGGTGGTGGAAAAGAAAATTA 59.220 34.615 0.00 0.00 0.00 1.40
5938 6361 6.399639 TCAGGTGGTGGAAAAGAAAATTAC 57.600 37.500 0.00 0.00 0.00 1.89
5939 6362 6.133356 TCAGGTGGTGGAAAAGAAAATTACT 58.867 36.000 0.00 0.00 0.00 2.24
5940 6363 6.264518 TCAGGTGGTGGAAAAGAAAATTACTC 59.735 38.462 0.00 0.00 0.00 2.59
5941 6364 5.538813 AGGTGGTGGAAAAGAAAATTACTCC 59.461 40.000 0.00 0.00 0.00 3.85
5942 6365 5.279306 GGTGGTGGAAAAGAAAATTACTCCC 60.279 44.000 0.00 0.00 0.00 4.30
5943 6366 5.538813 GTGGTGGAAAAGAAAATTACTCCCT 59.461 40.000 0.00 0.00 0.00 4.20
5944 6367 5.773176 TGGTGGAAAAGAAAATTACTCCCTC 59.227 40.000 0.00 0.00 0.00 4.30
5945 6368 5.185249 GGTGGAAAAGAAAATTACTCCCTCC 59.815 44.000 0.00 0.00 0.00 4.30
5946 6369 5.007682 TGGAAAAGAAAATTACTCCCTCCG 58.992 41.667 0.00 0.00 0.00 4.63
5947 6370 5.008331 GGAAAAGAAAATTACTCCCTCCGT 58.992 41.667 0.00 0.00 0.00 4.69
5948 6371 5.475909 GGAAAAGAAAATTACTCCCTCCGTT 59.524 40.000 0.00 0.00 0.00 4.44
5949 6372 6.015688 GGAAAAGAAAATTACTCCCTCCGTTT 60.016 38.462 0.00 0.00 0.00 3.60
5950 6373 6.570672 AAAGAAAATTACTCCCTCCGTTTC 57.429 37.500 0.00 0.00 0.00 2.78
5951 6374 5.237236 AGAAAATTACTCCCTCCGTTTCA 57.763 39.130 0.00 0.00 0.00 2.69
5952 6375 5.627135 AGAAAATTACTCCCTCCGTTTCAA 58.373 37.500 0.00 0.00 0.00 2.69
5953 6376 6.066032 AGAAAATTACTCCCTCCGTTTCAAA 58.934 36.000 0.00 0.00 0.00 2.69
5954 6377 6.719829 AGAAAATTACTCCCTCCGTTTCAAAT 59.280 34.615 0.00 0.00 0.00 2.32
5955 6378 6.911250 AAATTACTCCCTCCGTTTCAAATT 57.089 33.333 0.00 0.00 0.00 1.82
5956 6379 8.411991 AAAATTACTCCCTCCGTTTCAAATTA 57.588 30.769 0.00 0.00 0.00 1.40
5957 6380 8.589701 AAATTACTCCCTCCGTTTCAAATTAT 57.410 30.769 0.00 0.00 0.00 1.28
5958 6381 8.589701 AATTACTCCCTCCGTTTCAAATTATT 57.410 30.769 0.00 0.00 0.00 1.40
5959 6382 7.619964 TTACTCCCTCCGTTTCAAATTATTC 57.380 36.000 0.00 0.00 0.00 1.75
5960 6383 4.634443 ACTCCCTCCGTTTCAAATTATTCG 59.366 41.667 0.00 0.00 0.00 3.34
5961 6384 4.581868 TCCCTCCGTTTCAAATTATTCGT 58.418 39.130 0.00 0.00 0.00 3.85
5962 6385 4.632688 TCCCTCCGTTTCAAATTATTCGTC 59.367 41.667 0.00 0.00 0.00 4.20
5963 6386 4.493545 CCCTCCGTTTCAAATTATTCGTCG 60.494 45.833 0.00 0.00 0.00 5.12
5964 6387 3.993547 TCCGTTTCAAATTATTCGTCGC 58.006 40.909 0.00 0.00 0.00 5.19
5965 6388 3.432592 TCCGTTTCAAATTATTCGTCGCA 59.567 39.130 0.00 0.00 0.00 5.10
5966 6389 3.778718 CCGTTTCAAATTATTCGTCGCAG 59.221 43.478 0.00 0.00 0.00 5.18
5967 6390 4.434989 CCGTTTCAAATTATTCGTCGCAGA 60.435 41.667 0.00 0.00 0.00 4.26
5968 6391 5.076765 CGTTTCAAATTATTCGTCGCAGAA 58.923 37.500 0.00 0.00 39.69 3.02
5969 6392 5.562248 CGTTTCAAATTATTCGTCGCAGAAA 59.438 36.000 0.00 0.00 39.69 2.52
5970 6393 6.248420 CGTTTCAAATTATTCGTCGCAGAAAT 59.752 34.615 0.00 0.00 39.69 2.17
5971 6394 7.375781 GTTTCAAATTATTCGTCGCAGAAATG 58.624 34.615 0.00 0.00 39.69 2.32
5972 6395 5.568482 TCAAATTATTCGTCGCAGAAATGG 58.432 37.500 0.00 0.00 39.69 3.16
5973 6396 5.352846 TCAAATTATTCGTCGCAGAAATGGA 59.647 36.000 0.00 0.00 39.69 3.41
5974 6397 6.038161 TCAAATTATTCGTCGCAGAAATGGAT 59.962 34.615 0.00 0.00 39.69 3.41
5975 6398 4.794248 TTATTCGTCGCAGAAATGGATG 57.206 40.909 0.00 0.00 39.69 3.51
5976 6399 2.093306 TTCGTCGCAGAAATGGATGT 57.907 45.000 0.00 0.00 39.69 3.06
5977 6400 2.951457 TCGTCGCAGAAATGGATGTA 57.049 45.000 0.00 0.00 39.69 2.29
5978 6401 3.452755 TCGTCGCAGAAATGGATGTAT 57.547 42.857 0.00 0.00 39.69 2.29
5979 6402 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
5980 6403 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
5981 6404 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
5982 6405 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
5983 6406 5.117745 CGTCGCAGAAATGGATGTATCTAAG 59.882 44.000 0.00 0.00 39.69 2.18
5984 6407 6.216569 GTCGCAGAAATGGATGTATCTAAGA 58.783 40.000 0.00 0.00 39.69 2.10
5985 6408 6.701841 GTCGCAGAAATGGATGTATCTAAGAA 59.298 38.462 0.00 0.00 39.69 2.52
5986 6409 6.701841 TCGCAGAAATGGATGTATCTAAGAAC 59.298 38.462 0.00 0.00 0.00 3.01
5987 6410 6.703607 CGCAGAAATGGATGTATCTAAGAACT 59.296 38.462 0.00 0.00 0.00 3.01
5988 6411 7.867909 CGCAGAAATGGATGTATCTAAGAACTA 59.132 37.037 0.00 0.00 0.00 2.24
5989 6412 9.547753 GCAGAAATGGATGTATCTAAGAACTAA 57.452 33.333 0.00 0.00 0.00 2.24
6016 6439 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
6017 6440 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
6018 6441 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
6019 6442 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
6020 6443 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
6021 6444 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
6022 6445 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
6023 6446 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
6024 6447 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
6025 6448 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
6026 6449 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
6027 6450 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
6028 6451 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
6029 6452 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
6030 6453 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
6031 6454 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
6032 6455 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
6033 6456 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
6049 6472 2.074576 GGAACGAAGGGAGTACAAAGC 58.925 52.381 0.00 0.00 0.00 3.51
6050 6473 2.549349 GGAACGAAGGGAGTACAAAGCA 60.549 50.000 0.00 0.00 0.00 3.91
6051 6474 2.165319 ACGAAGGGAGTACAAAGCAC 57.835 50.000 0.00 0.00 0.00 4.40
6052 6475 1.692519 ACGAAGGGAGTACAAAGCACT 59.307 47.619 0.00 0.00 0.00 4.40
6053 6476 2.069273 CGAAGGGAGTACAAAGCACTG 58.931 52.381 0.00 0.00 0.00 3.66
6054 6477 2.427506 GAAGGGAGTACAAAGCACTGG 58.572 52.381 0.00 0.00 0.00 4.00
6055 6478 1.435256 AGGGAGTACAAAGCACTGGT 58.565 50.000 0.00 0.00 0.00 4.00
6056 6479 1.072331 AGGGAGTACAAAGCACTGGTG 59.928 52.381 0.00 0.00 0.00 4.17
6057 6480 1.071699 GGGAGTACAAAGCACTGGTGA 59.928 52.381 4.79 0.00 0.00 4.02
6058 6481 2.290323 GGGAGTACAAAGCACTGGTGAT 60.290 50.000 4.79 0.00 0.00 3.06
6059 6482 3.055385 GGGAGTACAAAGCACTGGTGATA 60.055 47.826 4.79 0.00 0.00 2.15
6060 6483 4.184629 GGAGTACAAAGCACTGGTGATAG 58.815 47.826 4.79 0.00 0.00 2.08
6061 6484 4.184629 GAGTACAAAGCACTGGTGATAGG 58.815 47.826 4.79 0.00 0.00 2.57
6062 6485 1.826385 ACAAAGCACTGGTGATAGGC 58.174 50.000 4.79 0.00 0.00 3.93
6063 6486 1.352352 ACAAAGCACTGGTGATAGGCT 59.648 47.619 4.79 0.00 36.13 4.58
6064 6487 2.224867 ACAAAGCACTGGTGATAGGCTT 60.225 45.455 4.79 0.00 45.92 4.35
6065 6488 2.119801 AAGCACTGGTGATAGGCTTG 57.880 50.000 4.79 0.00 42.68 4.01
6066 6489 0.987294 AGCACTGGTGATAGGCTTGT 59.013 50.000 4.79 0.00 0.00 3.16
6067 6490 1.089920 GCACTGGTGATAGGCTTGTG 58.910 55.000 4.79 0.00 0.00 3.33
6068 6491 1.742761 CACTGGTGATAGGCTTGTGG 58.257 55.000 0.00 0.00 0.00 4.17
6069 6492 0.035056 ACTGGTGATAGGCTTGTGGC 60.035 55.000 0.00 0.00 40.90 5.01
6078 6501 3.181526 GGCTTGTGGCTTGCTATCT 57.818 52.632 0.00 0.00 41.46 1.98
6079 6502 1.020437 GGCTTGTGGCTTGCTATCTC 58.980 55.000 0.00 0.00 41.46 2.75
6080 6503 1.020437 GCTTGTGGCTTGCTATCTCC 58.980 55.000 0.00 0.00 38.06 3.71
6081 6504 1.673168 CTTGTGGCTTGCTATCTCCC 58.327 55.000 0.00 0.00 0.00 4.30
6082 6505 0.991146 TTGTGGCTTGCTATCTCCCA 59.009 50.000 0.00 0.00 0.00 4.37
6083 6506 0.991146 TGTGGCTTGCTATCTCCCAA 59.009 50.000 0.00 0.00 0.00 4.12
6084 6507 1.565759 TGTGGCTTGCTATCTCCCAAT 59.434 47.619 0.00 0.00 0.00 3.16
6085 6508 2.025037 TGTGGCTTGCTATCTCCCAATT 60.025 45.455 0.00 0.00 0.00 2.32
6086 6509 3.201930 TGTGGCTTGCTATCTCCCAATTA 59.798 43.478 0.00 0.00 0.00 1.40
6087 6510 4.141181 TGTGGCTTGCTATCTCCCAATTAT 60.141 41.667 0.00 0.00 0.00 1.28
6088 6511 5.073008 TGTGGCTTGCTATCTCCCAATTATA 59.927 40.000 0.00 0.00 0.00 0.98
6089 6512 6.183347 GTGGCTTGCTATCTCCCAATTATAT 58.817 40.000 0.00 0.00 0.00 0.86
6090 6513 6.317391 GTGGCTTGCTATCTCCCAATTATATC 59.683 42.308 0.00 0.00 0.00 1.63
6091 6514 5.825151 GGCTTGCTATCTCCCAATTATATCC 59.175 44.000 0.00 0.00 0.00 2.59
6092 6515 5.825151 GCTTGCTATCTCCCAATTATATCCC 59.175 44.000 0.00 0.00 0.00 3.85
6093 6516 5.975988 TGCTATCTCCCAATTATATCCCC 57.024 43.478 0.00 0.00 0.00 4.81
6094 6517 5.358306 TGCTATCTCCCAATTATATCCCCA 58.642 41.667 0.00 0.00 0.00 4.96
6095 6518 5.795343 TGCTATCTCCCAATTATATCCCCAA 59.205 40.000 0.00 0.00 0.00 4.12
6096 6519 6.276806 TGCTATCTCCCAATTATATCCCCAAA 59.723 38.462 0.00 0.00 0.00 3.28
6097 6520 7.182060 GCTATCTCCCAATTATATCCCCAAAA 58.818 38.462 0.00 0.00 0.00 2.44
6098 6521 7.340487 GCTATCTCCCAATTATATCCCCAAAAG 59.660 40.741 0.00 0.00 0.00 2.27
6099 6522 5.964288 TCTCCCAATTATATCCCCAAAAGG 58.036 41.667 0.00 0.00 0.00 3.11
6110 6533 3.520623 CCAAAAGGGGGCTCTATGG 57.479 57.895 0.00 0.00 0.00 2.74
6111 6534 0.756815 CCAAAAGGGGGCTCTATGGC 60.757 60.000 0.00 0.00 40.96 4.40
6112 6535 0.259938 CAAAAGGGGGCTCTATGGCT 59.740 55.000 0.00 0.00 41.48 4.75
6113 6536 0.553333 AAAAGGGGGCTCTATGGCTC 59.447 55.000 0.00 0.00 41.61 4.70
6114 6537 0.327964 AAAGGGGGCTCTATGGCTCT 60.328 55.000 0.00 0.00 42.07 4.09
6115 6538 0.568192 AAGGGGGCTCTATGGCTCTA 59.432 55.000 0.00 0.00 42.07 2.43
6116 6539 0.116143 AGGGGGCTCTATGGCTCTAG 59.884 60.000 0.00 0.00 42.07 2.43
6117 6540 1.549243 GGGGGCTCTATGGCTCTAGC 61.549 65.000 0.00 0.00 42.07 3.42
6118 6541 0.833834 GGGGCTCTATGGCTCTAGCA 60.834 60.000 4.07 0.00 44.36 3.49
6119 6542 0.320050 GGGCTCTATGGCTCTAGCAC 59.680 60.000 4.07 0.00 44.36 4.40
6120 6543 0.320050 GGCTCTATGGCTCTAGCACC 59.680 60.000 4.07 0.00 44.36 5.01
6121 6544 1.043816 GCTCTATGGCTCTAGCACCA 58.956 55.000 4.07 6.08 44.36 4.17
6122 6545 1.000731 GCTCTATGGCTCTAGCACCAG 59.999 57.143 4.07 0.00 44.36 4.00
6123 6546 1.000731 CTCTATGGCTCTAGCACCAGC 59.999 57.143 4.07 1.65 44.36 4.85
6124 6547 0.755079 CTATGGCTCTAGCACCAGCA 59.245 55.000 4.07 0.00 45.49 4.41
6125 6548 1.139654 CTATGGCTCTAGCACCAGCAA 59.860 52.381 4.07 0.00 45.49 3.91
6126 6549 0.107312 ATGGCTCTAGCACCAGCAAG 60.107 55.000 4.07 0.00 45.49 4.01
6127 6550 1.451028 GGCTCTAGCACCAGCAAGG 60.451 63.158 4.07 0.00 45.49 3.61
6146 6569 2.014335 GTGCCATTGCTCCAAATTCC 57.986 50.000 0.00 0.00 38.71 3.01
6147 6570 1.551883 GTGCCATTGCTCCAAATTCCT 59.448 47.619 0.00 0.00 38.71 3.36
6148 6571 2.027837 GTGCCATTGCTCCAAATTCCTT 60.028 45.455 0.00 0.00 38.71 3.36
6149 6572 2.234414 TGCCATTGCTCCAAATTCCTTC 59.766 45.455 0.00 0.00 38.71 3.46
6150 6573 2.498885 GCCATTGCTCCAAATTCCTTCT 59.501 45.455 0.00 0.00 33.53 2.85
6151 6574 3.677976 GCCATTGCTCCAAATTCCTTCTG 60.678 47.826 0.00 0.00 33.53 3.02
6152 6575 3.765511 CCATTGCTCCAAATTCCTTCTGA 59.234 43.478 0.00 0.00 0.00 3.27
6153 6576 4.404715 CCATTGCTCCAAATTCCTTCTGAT 59.595 41.667 0.00 0.00 0.00 2.90
6154 6577 5.451520 CCATTGCTCCAAATTCCTTCTGATC 60.452 44.000 0.00 0.00 0.00 2.92
6155 6578 3.273434 TGCTCCAAATTCCTTCTGATCG 58.727 45.455 0.00 0.00 0.00 3.69
6156 6579 3.274288 GCTCCAAATTCCTTCTGATCGT 58.726 45.455 0.00 0.00 0.00 3.73
6157 6580 3.311048 GCTCCAAATTCCTTCTGATCGTC 59.689 47.826 0.00 0.00 0.00 4.20
6158 6581 3.521560 TCCAAATTCCTTCTGATCGTCG 58.478 45.455 0.00 0.00 0.00 5.12
6159 6582 3.056107 TCCAAATTCCTTCTGATCGTCGT 60.056 43.478 0.00 0.00 0.00 4.34
6160 6583 3.307242 CCAAATTCCTTCTGATCGTCGTC 59.693 47.826 0.00 0.00 0.00 4.20
6161 6584 3.868757 AATTCCTTCTGATCGTCGTCA 57.131 42.857 0.00 0.00 0.00 4.35
6162 6585 2.631418 TTCCTTCTGATCGTCGTCAC 57.369 50.000 0.00 0.00 0.00 3.67
6174 6597 2.212922 GTCGTCACGATGCTTTCAAC 57.787 50.000 1.61 0.00 38.42 3.18
6175 6598 1.525197 GTCGTCACGATGCTTTCAACA 59.475 47.619 1.61 0.00 38.42 3.33
6176 6599 1.792367 TCGTCACGATGCTTTCAACAG 59.208 47.619 0.00 0.00 0.00 3.16
6177 6600 1.526887 CGTCACGATGCTTTCAACAGT 59.473 47.619 0.00 0.00 0.00 3.55
6178 6601 2.032894 CGTCACGATGCTTTCAACAGTT 60.033 45.455 0.00 0.00 0.00 3.16
6179 6602 3.291585 GTCACGATGCTTTCAACAGTTG 58.708 45.455 6.99 6.99 0.00 3.16
6180 6603 2.290367 TCACGATGCTTTCAACAGTTGG 59.710 45.455 13.52 0.00 0.00 3.77
6181 6604 1.001378 ACGATGCTTTCAACAGTTGGC 60.001 47.619 13.52 9.45 0.00 4.52
6182 6605 1.267806 CGATGCTTTCAACAGTTGGCT 59.732 47.619 13.52 0.17 0.00 4.75
6183 6606 2.666619 CGATGCTTTCAACAGTTGGCTC 60.667 50.000 13.52 7.59 0.00 4.70
6184 6607 1.032014 TGCTTTCAACAGTTGGCTCC 58.968 50.000 13.52 1.42 0.00 4.70
6185 6608 1.322442 GCTTTCAACAGTTGGCTCCT 58.678 50.000 13.52 0.00 0.00 3.69
6186 6609 1.683385 GCTTTCAACAGTTGGCTCCTT 59.317 47.619 13.52 0.00 0.00 3.36
6187 6610 2.544486 GCTTTCAACAGTTGGCTCCTTG 60.544 50.000 13.52 0.00 0.00 3.61
6188 6611 2.435372 TTCAACAGTTGGCTCCTTGT 57.565 45.000 13.52 0.00 0.00 3.16
6189 6612 2.435372 TCAACAGTTGGCTCCTTGTT 57.565 45.000 13.52 0.00 34.31 2.83
6190 6613 2.733956 TCAACAGTTGGCTCCTTGTTT 58.266 42.857 13.52 0.00 31.84 2.83
6191 6614 2.687935 TCAACAGTTGGCTCCTTGTTTC 59.312 45.455 13.52 0.00 31.84 2.78
6192 6615 2.689983 CAACAGTTGGCTCCTTGTTTCT 59.310 45.455 5.25 0.00 31.84 2.52
6193 6616 2.301346 ACAGTTGGCTCCTTGTTTCTG 58.699 47.619 0.00 0.00 0.00 3.02
6194 6617 2.092429 ACAGTTGGCTCCTTGTTTCTGA 60.092 45.455 0.00 0.00 0.00 3.27
6195 6618 2.951642 CAGTTGGCTCCTTGTTTCTGAA 59.048 45.455 0.00 0.00 0.00 3.02
6196 6619 3.381272 CAGTTGGCTCCTTGTTTCTGAAA 59.619 43.478 0.00 0.00 0.00 2.69
6197 6620 4.023291 AGTTGGCTCCTTGTTTCTGAAAA 58.977 39.130 4.09 0.00 0.00 2.29
6198 6621 4.112634 GTTGGCTCCTTGTTTCTGAAAAC 58.887 43.478 4.09 0.66 44.18 2.43
6209 6632 4.550422 GTTTCTGAAAACAGCCTCATTCC 58.450 43.478 4.09 0.00 43.52 3.01
6210 6633 2.426522 TCTGAAAACAGCCTCATTCCG 58.573 47.619 0.00 0.00 0.00 4.30
6211 6634 2.154462 CTGAAAACAGCCTCATTCCGT 58.846 47.619 0.00 0.00 0.00 4.69
6212 6635 2.554032 CTGAAAACAGCCTCATTCCGTT 59.446 45.455 0.00 0.00 0.00 4.44
6213 6636 2.552315 TGAAAACAGCCTCATTCCGTTC 59.448 45.455 0.00 0.00 0.00 3.95
6214 6637 1.534729 AAACAGCCTCATTCCGTTCC 58.465 50.000 0.00 0.00 0.00 3.62
6215 6638 0.693049 AACAGCCTCATTCCGTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
6216 6639 0.693049 ACAGCCTCATTCCGTTCCTT 59.307 50.000 0.00 0.00 0.00 3.36
6217 6640 1.073923 ACAGCCTCATTCCGTTCCTTT 59.926 47.619 0.00 0.00 0.00 3.11
6218 6641 1.740025 CAGCCTCATTCCGTTCCTTTC 59.260 52.381 0.00 0.00 0.00 2.62
6219 6642 1.351017 AGCCTCATTCCGTTCCTTTCA 59.649 47.619 0.00 0.00 0.00 2.69
6220 6643 2.025887 AGCCTCATTCCGTTCCTTTCAT 60.026 45.455 0.00 0.00 0.00 2.57
6221 6644 3.199946 AGCCTCATTCCGTTCCTTTCATA 59.800 43.478 0.00 0.00 0.00 2.15
6222 6645 4.137543 GCCTCATTCCGTTCCTTTCATAT 58.862 43.478 0.00 0.00 0.00 1.78
6223 6646 4.580580 GCCTCATTCCGTTCCTTTCATATT 59.419 41.667 0.00 0.00 0.00 1.28
6224 6647 5.067805 GCCTCATTCCGTTCCTTTCATATTT 59.932 40.000 0.00 0.00 0.00 1.40
6225 6648 6.729187 CCTCATTCCGTTCCTTTCATATTTC 58.271 40.000 0.00 0.00 0.00 2.17
6226 6649 6.543831 CCTCATTCCGTTCCTTTCATATTTCT 59.456 38.462 0.00 0.00 0.00 2.52
6227 6650 7.254932 CCTCATTCCGTTCCTTTCATATTTCTC 60.255 40.741 0.00 0.00 0.00 2.87
6228 6651 7.338710 TCATTCCGTTCCTTTCATATTTCTCT 58.661 34.615 0.00 0.00 0.00 3.10
6229 6652 7.829211 TCATTCCGTTCCTTTCATATTTCTCTT 59.171 33.333 0.00 0.00 0.00 2.85
6230 6653 6.985188 TCCGTTCCTTTCATATTTCTCTTG 57.015 37.500 0.00 0.00 0.00 3.02
6231 6654 5.354234 TCCGTTCCTTTCATATTTCTCTTGC 59.646 40.000 0.00 0.00 0.00 4.01
6232 6655 5.449177 CCGTTCCTTTCATATTTCTCTTGCC 60.449 44.000 0.00 0.00 0.00 4.52
6233 6656 5.123820 CGTTCCTTTCATATTTCTCTTGCCA 59.876 40.000 0.00 0.00 0.00 4.92
6234 6657 6.325596 GTTCCTTTCATATTTCTCTTGCCAC 58.674 40.000 0.00 0.00 0.00 5.01
6235 6658 5.569355 TCCTTTCATATTTCTCTTGCCACA 58.431 37.500 0.00 0.00 0.00 4.17
6236 6659 6.009589 TCCTTTCATATTTCTCTTGCCACAA 58.990 36.000 0.00 0.00 0.00 3.33
6237 6660 6.151648 TCCTTTCATATTTCTCTTGCCACAAG 59.848 38.462 0.81 0.81 0.00 3.16
6238 6661 5.902613 TTCATATTTCTCTTGCCACAAGG 57.097 39.130 7.44 0.00 38.23 3.61
6239 6662 5.178096 TCATATTTCTCTTGCCACAAGGA 57.822 39.130 7.44 1.81 36.89 3.36
6240 6663 5.188434 TCATATTTCTCTTGCCACAAGGAG 58.812 41.667 7.44 4.51 36.89 3.69
6241 6664 3.515602 ATTTCTCTTGCCACAAGGAGT 57.484 42.857 7.44 0.00 36.89 3.85
6242 6665 4.640771 ATTTCTCTTGCCACAAGGAGTA 57.359 40.909 7.44 0.00 36.89 2.59
6243 6666 4.431416 TTTCTCTTGCCACAAGGAGTAA 57.569 40.909 7.44 2.47 36.89 2.24
6244 6667 3.402628 TCTCTTGCCACAAGGAGTAAC 57.597 47.619 7.44 0.00 36.89 2.50
6245 6668 2.703536 TCTCTTGCCACAAGGAGTAACA 59.296 45.455 7.44 0.00 36.89 2.41
6246 6669 3.327757 TCTCTTGCCACAAGGAGTAACAT 59.672 43.478 7.44 0.00 36.89 2.71
6247 6670 3.411446 TCTTGCCACAAGGAGTAACATG 58.589 45.455 7.44 0.00 36.89 3.21
6248 6671 2.198827 TGCCACAAGGAGTAACATGG 57.801 50.000 0.00 0.00 36.89 3.66
6249 6672 1.423541 TGCCACAAGGAGTAACATGGT 59.576 47.619 0.00 0.00 36.89 3.55
6250 6673 2.084546 GCCACAAGGAGTAACATGGTC 58.915 52.381 0.00 0.00 36.89 4.02
6251 6674 2.711542 CCACAAGGAGTAACATGGTCC 58.288 52.381 0.00 0.00 36.89 4.46
6252 6675 2.305927 CCACAAGGAGTAACATGGTCCT 59.694 50.000 0.00 0.00 42.87 3.85
6254 6677 4.019681 CCACAAGGAGTAACATGGTCCTTA 60.020 45.833 16.22 0.00 46.89 2.69
6255 6678 4.935808 CACAAGGAGTAACATGGTCCTTAC 59.064 45.833 16.22 7.84 46.89 2.34
6256 6679 4.019591 ACAAGGAGTAACATGGTCCTTACC 60.020 45.833 16.22 0.00 46.89 2.85
6257 6680 3.113043 AGGAGTAACATGGTCCTTACCC 58.887 50.000 0.00 1.35 46.16 3.69
6258 6681 2.172082 GGAGTAACATGGTCCTTACCCC 59.828 54.545 0.00 0.00 46.16 4.95
6259 6682 2.841881 GAGTAACATGGTCCTTACCCCA 59.158 50.000 0.00 0.00 46.16 4.96
6260 6683 2.574824 AGTAACATGGTCCTTACCCCAC 59.425 50.000 0.00 0.00 46.16 4.61
6261 6684 0.326927 AACATGGTCCTTACCCCACG 59.673 55.000 0.00 0.00 46.16 4.94
6262 6685 1.451387 CATGGTCCTTACCCCACGC 60.451 63.158 0.00 0.00 46.16 5.34
6263 6686 2.676265 ATGGTCCTTACCCCACGCC 61.676 63.158 0.00 0.00 46.16 5.68
6264 6687 3.007323 GGTCCTTACCCCACGCCT 61.007 66.667 0.00 0.00 40.21 5.52
6265 6688 2.267961 GTCCTTACCCCACGCCTG 59.732 66.667 0.00 0.00 0.00 4.85
6266 6689 2.203877 TCCTTACCCCACGCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
6267 6690 2.267961 CCTTACCCCACGCCTGTC 59.732 66.667 0.00 0.00 0.00 3.51
6268 6691 2.267961 CTTACCCCACGCCTGTCC 59.732 66.667 0.00 0.00 0.00 4.02
6269 6692 2.203877 TTACCCCACGCCTGTCCT 60.204 61.111 0.00 0.00 0.00 3.85
6270 6693 2.240162 CTTACCCCACGCCTGTCCTC 62.240 65.000 0.00 0.00 0.00 3.71
6271 6694 3.533079 TACCCCACGCCTGTCCTCA 62.533 63.158 0.00 0.00 0.00 3.86
6272 6695 4.087892 CCCCACGCCTGTCCTCAG 62.088 72.222 0.00 0.00 41.01 3.35
6281 6704 1.078567 CTGTCCTCAGGAGCCAAGC 60.079 63.158 0.00 0.00 37.97 4.01
6282 6705 2.125350 GTCCTCAGGAGCCAAGCG 60.125 66.667 0.00 0.00 29.39 4.68
6283 6706 4.087892 TCCTCAGGAGCCAAGCGC 62.088 66.667 0.00 0.00 37.98 5.92
6290 6713 4.742201 GAGCCAAGCGCCTGTCGA 62.742 66.667 2.29 0.00 41.67 4.20
6291 6714 4.087892 AGCCAAGCGCCTGTCGAT 62.088 61.111 2.29 0.00 41.67 3.59
6292 6715 3.869272 GCCAAGCGCCTGTCGATG 61.869 66.667 2.29 0.00 41.67 3.84
6293 6716 2.434884 CCAAGCGCCTGTCGATGT 60.435 61.111 2.29 0.00 41.67 3.06
6294 6717 2.034879 CCAAGCGCCTGTCGATGTT 61.035 57.895 2.29 0.00 41.67 2.71
6295 6718 1.421485 CAAGCGCCTGTCGATGTTC 59.579 57.895 2.29 0.00 41.67 3.18
6296 6719 1.016130 CAAGCGCCTGTCGATGTTCT 61.016 55.000 2.29 0.00 41.67 3.01
6297 6720 1.016130 AAGCGCCTGTCGATGTTCTG 61.016 55.000 2.29 0.00 41.67 3.02
6298 6721 2.456119 GCGCCTGTCGATGTTCTGG 61.456 63.158 0.00 0.00 41.67 3.86
6299 6722 2.456119 CGCCTGTCGATGTTCTGGC 61.456 63.158 10.49 10.49 42.49 4.85
6300 6723 1.375908 GCCTGTCGATGTTCTGGCA 60.376 57.895 14.30 0.00 44.33 4.92
6301 6724 0.955428 GCCTGTCGATGTTCTGGCAA 60.955 55.000 14.30 0.00 44.33 4.52
6302 6725 1.522668 CCTGTCGATGTTCTGGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
6303 6726 2.086869 CCTGTCGATGTTCTGGCAAAT 58.913 47.619 0.00 0.00 0.00 2.32
6304 6727 2.159476 CCTGTCGATGTTCTGGCAAATG 60.159 50.000 0.00 0.00 0.00 2.32
6305 6728 1.811965 TGTCGATGTTCTGGCAAATGG 59.188 47.619 0.00 0.00 0.00 3.16
6306 6729 0.810648 TCGATGTTCTGGCAAATGGC 59.189 50.000 0.00 0.00 43.74 4.40
6307 6730 0.523968 CGATGTTCTGGCAAATGGCG 60.524 55.000 2.36 0.00 46.16 5.69
6308 6731 0.810648 GATGTTCTGGCAAATGGCGA 59.189 50.000 2.36 0.61 46.16 5.54
6309 6732 1.406539 GATGTTCTGGCAAATGGCGAT 59.593 47.619 2.36 0.00 46.16 4.58
6310 6733 0.810648 TGTTCTGGCAAATGGCGATC 59.189 50.000 2.36 3.56 46.16 3.69
6311 6734 0.248215 GTTCTGGCAAATGGCGATCG 60.248 55.000 11.69 11.69 46.16 3.69
6312 6735 0.676466 TTCTGGCAAATGGCGATCGT 60.676 50.000 17.81 0.00 46.16 3.73
6313 6736 0.176910 TCTGGCAAATGGCGATCGTA 59.823 50.000 17.81 6.83 46.16 3.43
6314 6737 0.583438 CTGGCAAATGGCGATCGTAG 59.417 55.000 17.81 1.92 46.16 3.51
6315 6738 0.176910 TGGCAAATGGCGATCGTAGA 59.823 50.000 17.81 0.89 46.16 2.59
6316 6739 1.295792 GGCAAATGGCGATCGTAGAA 58.704 50.000 17.81 0.16 46.16 2.10
6317 6740 1.261619 GGCAAATGGCGATCGTAGAAG 59.738 52.381 17.81 4.25 46.16 2.85
6318 6741 2.201732 GCAAATGGCGATCGTAGAAGA 58.798 47.619 17.81 0.00 43.58 2.87
6319 6742 2.219674 GCAAATGGCGATCGTAGAAGAG 59.780 50.000 17.81 3.26 43.58 2.85
6320 6743 3.706698 CAAATGGCGATCGTAGAAGAGA 58.293 45.455 17.81 0.00 43.58 3.10
6321 6744 3.634568 AATGGCGATCGTAGAAGAGAG 57.365 47.619 17.81 0.00 43.58 3.20
6322 6745 0.663688 TGGCGATCGTAGAAGAGAGC 59.336 55.000 17.81 0.00 43.58 4.09
6323 6746 0.663688 GGCGATCGTAGAAGAGAGCA 59.336 55.000 17.81 0.00 43.58 4.26
6324 6747 1.598430 GGCGATCGTAGAAGAGAGCAC 60.598 57.143 17.81 0.00 43.58 4.40
6325 6748 1.918112 GCGATCGTAGAAGAGAGCACG 60.918 57.143 17.81 0.00 43.58 5.34
6326 6749 1.333347 CGATCGTAGAAGAGAGCACGG 60.333 57.143 7.03 0.00 43.58 4.94
6327 6750 1.002251 GATCGTAGAAGAGAGCACGGG 60.002 57.143 0.00 0.00 43.58 5.28
6328 6751 1.226717 CGTAGAAGAGAGCACGGGC 60.227 63.158 0.00 0.00 41.61 6.13
6360 6783 2.667536 CAGCGCTGCACAACCTCT 60.668 61.111 26.68 0.00 0.00 3.69
6361 6784 2.358003 AGCGCTGCACAACCTCTC 60.358 61.111 10.39 0.00 0.00 3.20
6362 6785 3.426568 GCGCTGCACAACCTCTCC 61.427 66.667 0.00 0.00 0.00 3.71
6363 6786 2.031012 CGCTGCACAACCTCTCCA 59.969 61.111 0.00 0.00 0.00 3.86
6364 6787 1.376424 CGCTGCACAACCTCTCCAT 60.376 57.895 0.00 0.00 0.00 3.41
6365 6788 1.642037 CGCTGCACAACCTCTCCATG 61.642 60.000 0.00 0.00 0.00 3.66
6366 6789 0.321919 GCTGCACAACCTCTCCATGA 60.322 55.000 0.00 0.00 0.00 3.07
6367 6790 1.735386 CTGCACAACCTCTCCATGAG 58.265 55.000 0.00 0.00 42.30 2.90
6377 6800 3.191078 CTCTCCATGAGGCTACCTTTG 57.809 52.381 0.00 0.00 39.08 2.77
6378 6801 1.210478 TCTCCATGAGGCTACCTTTGC 59.790 52.381 0.00 0.00 31.76 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 32 0.096976 AAATCATCCTCGCGCAAACG 59.903 50.000 8.75 0.00 44.07 3.60
343 350 4.323417 TGCACTTCAGATTTACGGAATGT 58.677 39.130 0.00 0.00 32.87 2.71
389 405 3.287222 TCCAACAACCAAGAAGTTCTGG 58.713 45.455 6.06 12.20 33.68 3.86
390 406 5.520376 AATCCAACAACCAAGAAGTTCTG 57.480 39.130 6.06 0.00 0.00 3.02
391 407 5.656416 TGAAATCCAACAACCAAGAAGTTCT 59.344 36.000 0.00 0.00 0.00 3.01
424 440 5.864474 CGTAGATCTATAACATCACCCAAGC 59.136 44.000 5.57 0.00 0.00 4.01
453 471 7.554118 CAGTAACCAACTCATATTCATTCACCT 59.446 37.037 0.00 0.00 35.76 4.00
454 472 7.336931 ACAGTAACCAACTCATATTCATTCACC 59.663 37.037 0.00 0.00 35.76 4.02
470 488 8.197592 TCCTCACTAGAAAATACAGTAACCAA 57.802 34.615 0.00 0.00 0.00 3.67
558 577 1.298157 GCTCAATGCAGCCGTACACA 61.298 55.000 0.00 0.00 42.31 3.72
592 611 9.979270 CAAGCTAATCTTCACTAAAATACAGTG 57.021 33.333 0.00 0.00 43.92 3.66
840 864 1.556911 AGGAGCAGGTAATGGACAGTG 59.443 52.381 0.00 0.00 0.00 3.66
892 916 3.691609 GGACAAACTCTAAGCCATCAAGG 59.308 47.826 0.00 0.00 41.84 3.61
911 935 4.468153 AGTTACTCCATTCTCCTTCAGGAC 59.532 45.833 0.00 0.00 39.78 3.85
927 951 7.704899 ACCTGCAAAATTTAACAACAGTTACTC 59.295 33.333 0.00 0.00 0.00 2.59
964 988 7.745620 AATACAACCTCTACAAAAGGAACAG 57.254 36.000 0.00 0.00 37.35 3.16
1308 1337 9.626045 GTTAAATTAGATTTTCCAGACACCTTG 57.374 33.333 0.00 0.00 33.82 3.61
1716 1745 5.872617 TGGGACTTGTCAGTGAATATAAACG 59.127 40.000 0.00 0.00 31.22 3.60
1836 1865 3.302365 ACAGTGCACACATAAAATGGC 57.698 42.857 21.04 0.00 33.60 4.40
1898 1927 3.735237 AACCTATATGCCAGACTGTCG 57.265 47.619 1.52 0.00 0.00 4.35
2055 2202 5.607939 TTCTCACCTAGAAATATTCCGCA 57.392 39.130 0.00 0.00 41.35 5.69
2228 2377 3.079578 CCTTCAGAATCTTGCAAGCAGA 58.920 45.455 21.99 5.18 0.00 4.26
2252 2401 4.023450 GCTTGTGGTTTTACCTGAACCTAC 60.023 45.833 7.45 5.11 45.39 3.18
2435 2584 6.865205 GGTATGCCATATTTCTTTGCAAGATC 59.135 38.462 0.00 0.00 35.30 2.75
2685 2834 7.778382 AGTCAAACCTGTAGTAAAATGAAACCT 59.222 33.333 0.00 0.00 0.00 3.50
3053 3205 7.453393 TCTGTTCTTGTTCTGGATAAACTCAT 58.547 34.615 0.00 0.00 0.00 2.90
3436 3596 2.821378 CTGTTGCCACTTCCATGATCAA 59.179 45.455 0.00 0.00 0.00 2.57
3669 3829 3.308866 GCTATTAACATTCTCGTTGCCGT 59.691 43.478 0.00 0.00 35.01 5.68
3678 3838 4.641989 CCACAAGCTGGCTATTAACATTCT 59.358 41.667 0.00 0.00 31.36 2.40
3711 3871 2.680339 GGAGCATTTTTCCTCTCCTTCG 59.320 50.000 0.00 0.00 41.35 3.79
3815 3977 7.895759 AGAATTAACATGTGTGCATAAAAGGT 58.104 30.769 0.00 0.00 33.30 3.50
3858 4020 4.903054 TCATGAACAGTTTCAGCAGAGAT 58.097 39.130 0.00 0.00 45.07 2.75
4281 4444 6.038825 CACACCACAAAAACAGTCCAATAGTA 59.961 38.462 0.00 0.00 0.00 1.82
4282 4445 4.953579 ACACCACAAAAACAGTCCAATAGT 59.046 37.500 0.00 0.00 0.00 2.12
4352 4621 0.643820 GCGACAATTACTTCCGGACG 59.356 55.000 1.83 4.48 0.00 4.79
4356 4625 3.720920 CGTTTGAGCGACAATTACTTCCG 60.721 47.826 0.00 0.00 38.36 4.30
4361 4630 3.124636 ACATCCGTTTGAGCGACAATTAC 59.875 43.478 0.00 0.00 38.36 1.89
4414 4684 3.354771 GACATAACTGTCGCTCAAACG 57.645 47.619 0.00 0.00 42.24 3.60
4432 4702 1.823041 CTACTCCCTCCGTCCGGAC 60.823 68.421 25.28 25.28 39.76 4.79
4622 4900 9.646427 AAAGGAATAAAATTGCGCTAAACAATA 57.354 25.926 9.73 0.00 36.74 1.90
4741 5020 2.935238 GCCTGACCAGTTTTCAGCGATA 60.935 50.000 0.00 0.00 39.43 2.92
4780 5059 1.237285 CCTGAACCAGCCCTTTCACG 61.237 60.000 0.00 0.00 0.00 4.35
4863 5176 0.326595 TTGGGCGACAGCTAATTCCA 59.673 50.000 0.00 0.00 44.37 3.53
4872 5185 2.036958 TACATCCATTTGGGCGACAG 57.963 50.000 0.00 0.00 36.21 3.51
4899 5212 5.703730 AATTTCTACTCCACCCGGAATTA 57.296 39.130 0.73 0.00 42.21 1.40
4900 5213 4.586306 AATTTCTACTCCACCCGGAATT 57.414 40.909 0.73 0.00 42.21 2.17
4971 5355 1.148273 AGTGAAGAACGCTGGGCAA 59.852 52.632 0.00 0.00 37.99 4.52
5114 5500 3.244249 GCTCTTGTCCTCAACAGTAGGTT 60.244 47.826 0.00 0.00 39.58 3.50
5145 5532 4.829064 ATTAGTTTTGCTTCTGCGAACA 57.171 36.364 0.00 0.00 41.83 3.18
5412 5835 3.074412 AGTTGAGACAACAAATAGGCCG 58.926 45.455 15.29 0.00 0.00 6.13
5507 5930 1.138464 GACTCTACCCGGGGTCAAATC 59.862 57.143 27.92 13.00 37.09 2.17
5583 6006 8.540388 ACAACATAGAACAGATTCCTAGCTAAA 58.460 33.333 0.00 0.00 35.18 1.85
5621 6044 0.310854 CTTGTGAAAGGGCGTGGAAC 59.689 55.000 0.00 0.00 0.00 3.62
5651 6074 5.514500 AAACCAAAGGCATACTCCTAGAA 57.486 39.130 0.00 0.00 34.82 2.10
5664 6087 1.969923 TCAGCCATGGAAAACCAAAGG 59.030 47.619 18.40 0.00 0.00 3.11
5798 6221 2.595124 CATGACCGTGGCATGTACTA 57.405 50.000 10.57 0.00 38.59 1.82
5803 6226 1.243342 ACCAACATGACCGTGGCATG 61.243 55.000 15.61 15.61 46.49 4.06
5840 6263 5.705441 AGTATCACGCTGGATCTTTCAAAAA 59.295 36.000 0.00 0.00 0.00 1.94
5841 6264 5.122239 CAGTATCACGCTGGATCTTTCAAAA 59.878 40.000 0.00 0.00 0.00 2.44
5842 6265 4.631377 CAGTATCACGCTGGATCTTTCAAA 59.369 41.667 0.00 0.00 0.00 2.69
5843 6266 4.183865 CAGTATCACGCTGGATCTTTCAA 58.816 43.478 0.00 0.00 0.00 2.69
5844 6267 3.785486 CAGTATCACGCTGGATCTTTCA 58.215 45.455 0.00 0.00 0.00 2.69
5853 6276 1.945387 ATGAAGCCAGTATCACGCTG 58.055 50.000 0.00 0.00 31.92 5.18
5854 6277 2.093500 TCAATGAAGCCAGTATCACGCT 60.093 45.455 0.00 0.00 0.00 5.07
5855 6278 2.279741 TCAATGAAGCCAGTATCACGC 58.720 47.619 0.00 0.00 0.00 5.34
5856 6279 5.490139 AAATCAATGAAGCCAGTATCACG 57.510 39.130 0.00 0.00 0.00 4.35
5857 6280 6.038603 TGCTAAATCAATGAAGCCAGTATCAC 59.961 38.462 3.30 0.00 33.99 3.06
5858 6281 6.121590 TGCTAAATCAATGAAGCCAGTATCA 58.878 36.000 3.30 0.00 33.99 2.15
5859 6282 6.484643 TCTGCTAAATCAATGAAGCCAGTATC 59.515 38.462 3.30 0.00 33.99 2.24
5860 6283 6.359804 TCTGCTAAATCAATGAAGCCAGTAT 58.640 36.000 3.30 0.00 33.99 2.12
5861 6284 5.744171 TCTGCTAAATCAATGAAGCCAGTA 58.256 37.500 3.30 0.00 33.99 2.74
5862 6285 4.592942 TCTGCTAAATCAATGAAGCCAGT 58.407 39.130 3.30 0.00 33.99 4.00
5863 6286 5.356190 TCTTCTGCTAAATCAATGAAGCCAG 59.644 40.000 3.30 2.12 33.99 4.85
5864 6287 5.255687 TCTTCTGCTAAATCAATGAAGCCA 58.744 37.500 3.30 0.00 33.99 4.75
5865 6288 5.587844 TCTCTTCTGCTAAATCAATGAAGCC 59.412 40.000 3.30 0.00 33.99 4.35
5866 6289 6.674694 TCTCTTCTGCTAAATCAATGAAGC 57.325 37.500 0.00 0.00 33.21 3.86
5867 6290 6.509837 CGCTCTCTTCTGCTAAATCAATGAAG 60.510 42.308 0.00 0.00 34.12 3.02
5868 6291 5.292834 CGCTCTCTTCTGCTAAATCAATGAA 59.707 40.000 0.00 0.00 0.00 2.57
5869 6292 4.807834 CGCTCTCTTCTGCTAAATCAATGA 59.192 41.667 0.00 0.00 0.00 2.57
5870 6293 4.807834 TCGCTCTCTTCTGCTAAATCAATG 59.192 41.667 0.00 0.00 0.00 2.82
5871 6294 4.808364 GTCGCTCTCTTCTGCTAAATCAAT 59.192 41.667 0.00 0.00 0.00 2.57
5872 6295 4.177026 GTCGCTCTCTTCTGCTAAATCAA 58.823 43.478 0.00 0.00 0.00 2.57
5873 6296 3.193479 TGTCGCTCTCTTCTGCTAAATCA 59.807 43.478 0.00 0.00 0.00 2.57
5874 6297 3.775202 TGTCGCTCTCTTCTGCTAAATC 58.225 45.455 0.00 0.00 0.00 2.17
5875 6298 3.876274 TGTCGCTCTCTTCTGCTAAAT 57.124 42.857 0.00 0.00 0.00 1.40
5876 6299 3.660501 TTGTCGCTCTCTTCTGCTAAA 57.339 42.857 0.00 0.00 0.00 1.85
5877 6300 3.660501 TTTGTCGCTCTCTTCTGCTAA 57.339 42.857 0.00 0.00 0.00 3.09
5878 6301 3.193479 TCATTTGTCGCTCTCTTCTGCTA 59.807 43.478 0.00 0.00 0.00 3.49
5879 6302 2.028658 TCATTTGTCGCTCTCTTCTGCT 60.029 45.455 0.00 0.00 0.00 4.24
5880 6303 2.341257 TCATTTGTCGCTCTCTTCTGC 58.659 47.619 0.00 0.00 0.00 4.26
5881 6304 2.928757 CCTCATTTGTCGCTCTCTTCTG 59.071 50.000 0.00 0.00 0.00 3.02
5882 6305 2.564947 ACCTCATTTGTCGCTCTCTTCT 59.435 45.455 0.00 0.00 0.00 2.85
5883 6306 2.966050 ACCTCATTTGTCGCTCTCTTC 58.034 47.619 0.00 0.00 0.00 2.87
5884 6307 3.070018 CAACCTCATTTGTCGCTCTCTT 58.930 45.455 0.00 0.00 0.00 2.85
5885 6308 2.300152 TCAACCTCATTTGTCGCTCTCT 59.700 45.455 0.00 0.00 0.00 3.10
5886 6309 2.688507 TCAACCTCATTTGTCGCTCTC 58.311 47.619 0.00 0.00 0.00 3.20
5887 6310 2.839486 TCAACCTCATTTGTCGCTCT 57.161 45.000 0.00 0.00 0.00 4.09
5888 6311 3.002791 TGATCAACCTCATTTGTCGCTC 58.997 45.455 0.00 0.00 0.00 5.03
5889 6312 3.057969 TGATCAACCTCATTTGTCGCT 57.942 42.857 0.00 0.00 0.00 4.93
5890 6313 3.189287 ACTTGATCAACCTCATTTGTCGC 59.811 43.478 3.38 0.00 0.00 5.19
5891 6314 4.452114 TCACTTGATCAACCTCATTTGTCG 59.548 41.667 3.38 0.00 0.00 4.35
5892 6315 5.947228 TCACTTGATCAACCTCATTTGTC 57.053 39.130 3.38 0.00 0.00 3.18
5906 6329 2.269023 TCCACCACCTGATCACTTGAT 58.731 47.619 0.00 0.00 37.51 2.57
5907 6330 1.728323 TCCACCACCTGATCACTTGA 58.272 50.000 0.00 0.00 0.00 3.02
5908 6331 2.566833 TTCCACCACCTGATCACTTG 57.433 50.000 0.00 0.00 0.00 3.16
5909 6332 3.138283 TCTTTTCCACCACCTGATCACTT 59.862 43.478 0.00 0.00 0.00 3.16
5910 6333 2.711009 TCTTTTCCACCACCTGATCACT 59.289 45.455 0.00 0.00 0.00 3.41
5911 6334 3.140325 TCTTTTCCACCACCTGATCAC 57.860 47.619 0.00 0.00 0.00 3.06
5912 6335 3.874383 TTCTTTTCCACCACCTGATCA 57.126 42.857 0.00 0.00 0.00 2.92
5913 6336 5.728637 ATTTTCTTTTCCACCACCTGATC 57.271 39.130 0.00 0.00 0.00 2.92
5914 6337 6.782494 AGTAATTTTCTTTTCCACCACCTGAT 59.218 34.615 0.00 0.00 0.00 2.90
5915 6338 6.133356 AGTAATTTTCTTTTCCACCACCTGA 58.867 36.000 0.00 0.00 0.00 3.86
5916 6339 6.405278 AGTAATTTTCTTTTCCACCACCTG 57.595 37.500 0.00 0.00 0.00 4.00
5917 6340 5.538813 GGAGTAATTTTCTTTTCCACCACCT 59.461 40.000 0.00 0.00 0.00 4.00
5918 6341 5.279306 GGGAGTAATTTTCTTTTCCACCACC 60.279 44.000 0.00 0.00 0.00 4.61
5919 6342 5.538813 AGGGAGTAATTTTCTTTTCCACCAC 59.461 40.000 0.00 0.00 0.00 4.16
5920 6343 5.711698 AGGGAGTAATTTTCTTTTCCACCA 58.288 37.500 0.00 0.00 0.00 4.17
5921 6344 5.185249 GGAGGGAGTAATTTTCTTTTCCACC 59.815 44.000 0.00 0.00 0.00 4.61
5922 6345 5.106277 CGGAGGGAGTAATTTTCTTTTCCAC 60.106 44.000 0.00 0.00 0.00 4.02
5923 6346 5.007682 CGGAGGGAGTAATTTTCTTTTCCA 58.992 41.667 0.00 0.00 0.00 3.53
5924 6347 5.008331 ACGGAGGGAGTAATTTTCTTTTCC 58.992 41.667 0.00 0.00 0.00 3.13
5925 6348 6.570672 AACGGAGGGAGTAATTTTCTTTTC 57.429 37.500 0.00 0.00 0.00 2.29
5926 6349 6.548251 TGAAACGGAGGGAGTAATTTTCTTTT 59.452 34.615 0.00 0.00 0.00 2.27
5927 6350 6.066032 TGAAACGGAGGGAGTAATTTTCTTT 58.934 36.000 0.00 0.00 0.00 2.52
5928 6351 5.627135 TGAAACGGAGGGAGTAATTTTCTT 58.373 37.500 0.00 0.00 0.00 2.52
5929 6352 5.237236 TGAAACGGAGGGAGTAATTTTCT 57.763 39.130 0.00 0.00 0.00 2.52
5930 6353 5.952526 TTGAAACGGAGGGAGTAATTTTC 57.047 39.130 0.00 0.00 0.00 2.29
5931 6354 6.911250 ATTTGAAACGGAGGGAGTAATTTT 57.089 33.333 0.00 0.00 0.00 1.82
5932 6355 6.911250 AATTTGAAACGGAGGGAGTAATTT 57.089 33.333 0.00 0.00 0.00 1.82
5933 6356 8.589701 AATAATTTGAAACGGAGGGAGTAATT 57.410 30.769 0.00 0.00 0.00 1.40
5934 6357 7.012044 CGAATAATTTGAAACGGAGGGAGTAAT 59.988 37.037 0.00 0.00 0.00 1.89
5935 6358 6.314400 CGAATAATTTGAAACGGAGGGAGTAA 59.686 38.462 0.00 0.00 0.00 2.24
5936 6359 5.813672 CGAATAATTTGAAACGGAGGGAGTA 59.186 40.000 0.00 0.00 0.00 2.59
5937 6360 4.634443 CGAATAATTTGAAACGGAGGGAGT 59.366 41.667 0.00 0.00 0.00 3.85
5938 6361 4.634443 ACGAATAATTTGAAACGGAGGGAG 59.366 41.667 0.00 0.00 0.00 4.30
5939 6362 4.581868 ACGAATAATTTGAAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
5940 6363 4.493545 CGACGAATAATTTGAAACGGAGGG 60.494 45.833 0.00 0.00 0.00 4.30
5941 6364 4.574759 CGACGAATAATTTGAAACGGAGG 58.425 43.478 0.00 0.00 0.00 4.30
5942 6365 4.019867 GCGACGAATAATTTGAAACGGAG 58.980 43.478 0.00 0.00 0.00 4.63
5943 6366 3.432592 TGCGACGAATAATTTGAAACGGA 59.567 39.130 0.00 0.00 0.00 4.69
5944 6367 3.738399 TGCGACGAATAATTTGAAACGG 58.262 40.909 0.00 0.00 0.00 4.44
5945 6368 4.634000 TCTGCGACGAATAATTTGAAACG 58.366 39.130 0.00 0.00 0.00 3.60
5946 6369 6.904954 TTTCTGCGACGAATAATTTGAAAC 57.095 33.333 0.00 0.00 0.00 2.78
5947 6370 6.526325 CCATTTCTGCGACGAATAATTTGAAA 59.474 34.615 0.00 0.00 0.00 2.69
5948 6371 6.027131 CCATTTCTGCGACGAATAATTTGAA 58.973 36.000 0.00 0.00 0.00 2.69
5949 6372 5.352846 TCCATTTCTGCGACGAATAATTTGA 59.647 36.000 0.00 0.00 0.00 2.69
5950 6373 5.568482 TCCATTTCTGCGACGAATAATTTG 58.432 37.500 0.00 0.00 0.00 2.32
5951 6374 5.811399 TCCATTTCTGCGACGAATAATTT 57.189 34.783 0.00 0.00 0.00 1.82
5952 6375 5.296780 ACATCCATTTCTGCGACGAATAATT 59.703 36.000 0.00 0.00 0.00 1.40
5953 6376 4.816385 ACATCCATTTCTGCGACGAATAAT 59.184 37.500 0.00 0.00 0.00 1.28
5954 6377 4.188462 ACATCCATTTCTGCGACGAATAA 58.812 39.130 0.00 0.00 0.00 1.40
5955 6378 3.792401 ACATCCATTTCTGCGACGAATA 58.208 40.909 0.00 0.00 0.00 1.75
5956 6379 2.632377 ACATCCATTTCTGCGACGAAT 58.368 42.857 0.00 0.00 0.00 3.34
5957 6380 2.093306 ACATCCATTTCTGCGACGAA 57.907 45.000 0.00 0.00 0.00 3.85
5958 6381 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
5959 6382 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
5960 6383 6.216569 TCTTAGATACATCCATTTCTGCGAC 58.783 40.000 0.00 0.00 0.00 5.19
5961 6384 6.405278 TCTTAGATACATCCATTTCTGCGA 57.595 37.500 0.00 0.00 0.00 5.10
5962 6385 6.703607 AGTTCTTAGATACATCCATTTCTGCG 59.296 38.462 0.00 0.00 0.00 5.18
5963 6386 9.547753 TTAGTTCTTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
5990 6413 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
5991 6414 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
5992 6415 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
5993 6416 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
5994 6417 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
5995 6418 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
5996 6419 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
5997 6420 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
5998 6421 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
5999 6422 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
6000 6423 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
6001 6424 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
6002 6425 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
6003 6426 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
6004 6427 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
6005 6428 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
6006 6429 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
6007 6430 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
6008 6431 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
6009 6432 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
6010 6433 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
6011 6434 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
6012 6435 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
6013 6436 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
6014 6437 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
6015 6438 1.987770 TCGTTCCGAATTACTTGTCGC 59.012 47.619 0.00 0.00 35.93 5.19
6016 6439 3.060363 CCTTCGTTCCGAATTACTTGTCG 59.940 47.826 0.00 0.00 44.85 4.35
6017 6440 3.370061 CCCTTCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 44.85 3.18
6018 6441 3.007182 TCCCTTCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 44.85 3.16
6019 6442 3.592059 TCCCTTCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 44.85 3.16
6020 6443 3.260128 ACTCCCTTCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 44.85 2.24
6021 6444 2.830321 ACTCCCTTCGTTCCGAATTACT 59.170 45.455 0.00 0.00 44.85 2.24
6022 6445 3.242549 ACTCCCTTCGTTCCGAATTAC 57.757 47.619 0.00 0.00 44.85 1.89
6023 6446 3.763360 TGTACTCCCTTCGTTCCGAATTA 59.237 43.478 0.00 0.00 44.85 1.40
6024 6447 2.564062 TGTACTCCCTTCGTTCCGAATT 59.436 45.455 0.00 0.00 44.85 2.17
6025 6448 2.173519 TGTACTCCCTTCGTTCCGAAT 58.826 47.619 0.00 0.00 44.85 3.34
6026 6449 1.619654 TGTACTCCCTTCGTTCCGAA 58.380 50.000 0.00 0.00 43.75 4.30
6027 6450 1.619654 TTGTACTCCCTTCGTTCCGA 58.380 50.000 0.00 0.00 0.00 4.55
6028 6451 2.334838 CTTTGTACTCCCTTCGTTCCG 58.665 52.381 0.00 0.00 0.00 4.30
6029 6452 2.074576 GCTTTGTACTCCCTTCGTTCC 58.925 52.381 0.00 0.00 0.00 3.62
6030 6453 2.479275 GTGCTTTGTACTCCCTTCGTTC 59.521 50.000 0.00 0.00 0.00 3.95
6031 6454 2.104281 AGTGCTTTGTACTCCCTTCGTT 59.896 45.455 0.00 0.00 0.00 3.85
6032 6455 1.692519 AGTGCTTTGTACTCCCTTCGT 59.307 47.619 0.00 0.00 0.00 3.85
6033 6456 2.069273 CAGTGCTTTGTACTCCCTTCG 58.931 52.381 0.00 0.00 0.00 3.79
6034 6457 2.224548 ACCAGTGCTTTGTACTCCCTTC 60.225 50.000 0.00 0.00 0.00 3.46
6035 6458 1.774856 ACCAGTGCTTTGTACTCCCTT 59.225 47.619 0.00 0.00 0.00 3.95
6036 6459 1.072331 CACCAGTGCTTTGTACTCCCT 59.928 52.381 0.00 0.00 0.00 4.20
6037 6460 1.071699 TCACCAGTGCTTTGTACTCCC 59.928 52.381 0.00 0.00 0.00 4.30
6038 6461 2.543777 TCACCAGTGCTTTGTACTCC 57.456 50.000 0.00 0.00 0.00 3.85
6039 6462 4.184629 CCTATCACCAGTGCTTTGTACTC 58.815 47.826 0.00 0.00 0.00 2.59
6040 6463 3.619979 GCCTATCACCAGTGCTTTGTACT 60.620 47.826 0.00 0.00 0.00 2.73
6041 6464 2.678336 GCCTATCACCAGTGCTTTGTAC 59.322 50.000 0.00 0.00 0.00 2.90
6042 6465 2.571653 AGCCTATCACCAGTGCTTTGTA 59.428 45.455 0.00 0.00 0.00 2.41
6043 6466 1.352352 AGCCTATCACCAGTGCTTTGT 59.648 47.619 0.00 0.00 0.00 2.83
6044 6467 2.119801 AGCCTATCACCAGTGCTTTG 57.880 50.000 0.00 0.00 0.00 2.77
6045 6468 2.224867 ACAAGCCTATCACCAGTGCTTT 60.225 45.455 0.00 0.00 40.08 3.51
6046 6469 1.352352 ACAAGCCTATCACCAGTGCTT 59.648 47.619 0.00 0.00 42.62 3.91
6047 6470 0.987294 ACAAGCCTATCACCAGTGCT 59.013 50.000 0.00 0.00 0.00 4.40
6048 6471 1.089920 CACAAGCCTATCACCAGTGC 58.910 55.000 0.00 0.00 0.00 4.40
6049 6472 1.742761 CCACAAGCCTATCACCAGTG 58.257 55.000 0.00 0.00 0.00 3.66
6050 6473 0.035056 GCCACAAGCCTATCACCAGT 60.035 55.000 0.00 0.00 34.35 4.00
6051 6474 0.254178 AGCCACAAGCCTATCACCAG 59.746 55.000 0.00 0.00 45.47 4.00
6052 6475 0.698238 AAGCCACAAGCCTATCACCA 59.302 50.000 0.00 0.00 45.47 4.17
6053 6476 1.098050 CAAGCCACAAGCCTATCACC 58.902 55.000 0.00 0.00 45.47 4.02
6054 6477 0.453390 GCAAGCCACAAGCCTATCAC 59.547 55.000 0.00 0.00 45.47 3.06
6055 6478 0.329261 AGCAAGCCACAAGCCTATCA 59.671 50.000 0.00 0.00 45.47 2.15
6056 6479 2.332063 TAGCAAGCCACAAGCCTATC 57.668 50.000 0.00 0.00 45.47 2.08
6057 6480 2.441001 AGATAGCAAGCCACAAGCCTAT 59.559 45.455 0.00 0.00 45.47 2.57
6058 6481 1.839994 AGATAGCAAGCCACAAGCCTA 59.160 47.619 0.00 0.00 45.47 3.93
6059 6482 0.622665 AGATAGCAAGCCACAAGCCT 59.377 50.000 0.00 0.00 45.47 4.58
6060 6483 1.020437 GAGATAGCAAGCCACAAGCC 58.980 55.000 0.00 0.00 45.47 4.35
6061 6484 1.020437 GGAGATAGCAAGCCACAAGC 58.980 55.000 0.00 0.00 44.25 4.01
6062 6485 1.065199 TGGGAGATAGCAAGCCACAAG 60.065 52.381 0.00 0.00 0.00 3.16
6063 6486 0.991146 TGGGAGATAGCAAGCCACAA 59.009 50.000 0.00 0.00 0.00 3.33
6064 6487 0.991146 TTGGGAGATAGCAAGCCACA 59.009 50.000 0.00 0.00 0.00 4.17
6065 6488 2.355010 ATTGGGAGATAGCAAGCCAC 57.645 50.000 0.00 0.00 0.00 5.01
6066 6489 4.729552 ATAATTGGGAGATAGCAAGCCA 57.270 40.909 0.00 0.00 0.00 4.75
6067 6490 5.825151 GGATATAATTGGGAGATAGCAAGCC 59.175 44.000 0.00 0.00 0.00 4.35
6068 6491 5.825151 GGGATATAATTGGGAGATAGCAAGC 59.175 44.000 0.00 0.00 0.00 4.01
6069 6492 6.069440 TGGGGATATAATTGGGAGATAGCAAG 60.069 42.308 0.00 0.00 0.00 4.01
6070 6493 5.795343 TGGGGATATAATTGGGAGATAGCAA 59.205 40.000 0.00 0.00 0.00 3.91
6071 6494 5.358306 TGGGGATATAATTGGGAGATAGCA 58.642 41.667 0.00 0.00 0.00 3.49
6072 6495 5.975988 TGGGGATATAATTGGGAGATAGC 57.024 43.478 0.00 0.00 0.00 2.97
6073 6496 7.836183 CCTTTTGGGGATATAATTGGGAGATAG 59.164 40.741 0.00 0.00 35.46 2.08
6074 6497 7.708624 CCTTTTGGGGATATAATTGGGAGATA 58.291 38.462 0.00 0.00 35.46 1.98
6075 6498 6.565036 CCTTTTGGGGATATAATTGGGAGAT 58.435 40.000 0.00 0.00 35.46 2.75
6076 6499 5.964288 CCTTTTGGGGATATAATTGGGAGA 58.036 41.667 0.00 0.00 35.46 3.71
6092 6515 0.756815 GCCATAGAGCCCCCTTTTGG 60.757 60.000 0.00 0.00 39.97 3.28
6093 6516 0.259938 AGCCATAGAGCCCCCTTTTG 59.740 55.000 0.00 0.00 0.00 2.44
6094 6517 0.553333 GAGCCATAGAGCCCCCTTTT 59.447 55.000 0.00 0.00 0.00 2.27
6095 6518 0.327964 AGAGCCATAGAGCCCCCTTT 60.328 55.000 0.00 0.00 0.00 3.11
6096 6519 0.568192 TAGAGCCATAGAGCCCCCTT 59.432 55.000 0.00 0.00 0.00 3.95
6097 6520 0.116143 CTAGAGCCATAGAGCCCCCT 59.884 60.000 0.00 0.00 0.00 4.79
6098 6521 1.549243 GCTAGAGCCATAGAGCCCCC 61.549 65.000 0.00 0.00 34.31 5.40
6099 6522 0.833834 TGCTAGAGCCATAGAGCCCC 60.834 60.000 0.00 0.00 41.18 5.80
6100 6523 0.320050 GTGCTAGAGCCATAGAGCCC 59.680 60.000 0.00 0.00 41.18 5.19
6101 6524 0.320050 GGTGCTAGAGCCATAGAGCC 59.680 60.000 0.00 0.00 41.18 4.70
6102 6525 1.000731 CTGGTGCTAGAGCCATAGAGC 59.999 57.143 6.22 0.00 41.18 4.09
6103 6526 1.000731 GCTGGTGCTAGAGCCATAGAG 59.999 57.143 6.22 0.00 41.18 2.43
6104 6527 1.043816 GCTGGTGCTAGAGCCATAGA 58.956 55.000 6.22 0.00 41.18 1.98
6105 6528 0.755079 TGCTGGTGCTAGAGCCATAG 59.245 55.000 6.22 0.00 41.18 2.23
6106 6529 1.139654 CTTGCTGGTGCTAGAGCCATA 59.860 52.381 6.22 0.00 43.04 2.74
6107 6530 0.107312 CTTGCTGGTGCTAGAGCCAT 60.107 55.000 6.22 0.00 43.04 4.40
6108 6531 1.297689 CTTGCTGGTGCTAGAGCCA 59.702 57.895 0.00 0.00 43.04 4.75
6109 6532 1.451028 CCTTGCTGGTGCTAGAGCC 60.451 63.158 0.00 0.00 43.04 4.70
6110 6533 4.215349 CCTTGCTGGTGCTAGAGC 57.785 61.111 0.00 0.00 43.04 4.09
6119 6542 2.263540 GCAATGGCACCTTGCTGG 59.736 61.111 16.48 0.00 44.36 4.85
6122 6545 2.575461 GGAGCAATGGCACCTTGC 59.425 61.111 16.10 16.10 46.05 4.01
6127 6550 1.551883 AGGAATTTGGAGCAATGGCAC 59.448 47.619 0.00 0.00 44.61 5.01
6128 6551 1.941377 AGGAATTTGGAGCAATGGCA 58.059 45.000 0.00 0.00 44.61 4.92
6129 6552 2.498885 AGAAGGAATTTGGAGCAATGGC 59.501 45.455 0.00 0.00 41.61 4.40
6130 6553 3.765511 TCAGAAGGAATTTGGAGCAATGG 59.234 43.478 0.00 0.00 0.00 3.16
6131 6554 5.589192 GATCAGAAGGAATTTGGAGCAATG 58.411 41.667 0.00 0.00 0.00 2.82
6132 6555 4.337555 CGATCAGAAGGAATTTGGAGCAAT 59.662 41.667 0.00 0.00 0.00 3.56
6133 6556 3.691118 CGATCAGAAGGAATTTGGAGCAA 59.309 43.478 0.00 0.00 0.00 3.91
6134 6557 3.273434 CGATCAGAAGGAATTTGGAGCA 58.727 45.455 0.00 0.00 0.00 4.26
6135 6558 3.274288 ACGATCAGAAGGAATTTGGAGC 58.726 45.455 0.00 0.00 0.00 4.70
6136 6559 3.553511 CGACGATCAGAAGGAATTTGGAG 59.446 47.826 0.00 0.00 0.00 3.86
6137 6560 3.056107 ACGACGATCAGAAGGAATTTGGA 60.056 43.478 0.00 0.00 0.00 3.53
6138 6561 3.262420 ACGACGATCAGAAGGAATTTGG 58.738 45.455 0.00 0.00 0.00 3.28
6139 6562 3.926527 TGACGACGATCAGAAGGAATTTG 59.073 43.478 0.00 0.00 0.00 2.32
6140 6563 3.927142 GTGACGACGATCAGAAGGAATTT 59.073 43.478 0.00 0.00 0.00 1.82
6141 6564 3.512680 GTGACGACGATCAGAAGGAATT 58.487 45.455 0.00 0.00 0.00 2.17
6142 6565 3.152261 GTGACGACGATCAGAAGGAAT 57.848 47.619 0.00 0.00 0.00 3.01
6143 6566 2.631418 GTGACGACGATCAGAAGGAA 57.369 50.000 0.00 0.00 0.00 3.36
6155 6578 1.525197 TGTTGAAAGCATCGTGACGAC 59.475 47.619 10.91 0.00 39.18 4.34
6156 6579 1.792367 CTGTTGAAAGCATCGTGACGA 59.208 47.619 11.14 11.14 41.13 4.20
6157 6580 1.526887 ACTGTTGAAAGCATCGTGACG 59.473 47.619 0.00 0.00 0.00 4.35
6158 6581 3.291585 CAACTGTTGAAAGCATCGTGAC 58.708 45.455 15.26 0.00 0.00 3.67
6159 6582 2.290367 CCAACTGTTGAAAGCATCGTGA 59.710 45.455 21.49 0.00 0.00 4.35
6160 6583 2.653890 CCAACTGTTGAAAGCATCGTG 58.346 47.619 21.49 0.00 0.00 4.35
6161 6584 1.001378 GCCAACTGTTGAAAGCATCGT 60.001 47.619 21.49 0.00 0.00 3.73
6162 6585 1.267806 AGCCAACTGTTGAAAGCATCG 59.732 47.619 21.49 3.70 0.00 3.84
6163 6586 2.352127 GGAGCCAACTGTTGAAAGCATC 60.352 50.000 21.49 13.71 0.00 3.91
6164 6587 1.615392 GGAGCCAACTGTTGAAAGCAT 59.385 47.619 21.49 6.93 0.00 3.79
6165 6588 1.032014 GGAGCCAACTGTTGAAAGCA 58.968 50.000 21.49 0.00 0.00 3.91
6166 6589 1.322442 AGGAGCCAACTGTTGAAAGC 58.678 50.000 21.49 15.64 0.00 3.51
6167 6590 2.689983 ACAAGGAGCCAACTGTTGAAAG 59.310 45.455 21.49 6.51 0.00 2.62
6168 6591 2.733956 ACAAGGAGCCAACTGTTGAAA 58.266 42.857 21.49 0.00 0.00 2.69
6169 6592 2.435372 ACAAGGAGCCAACTGTTGAA 57.565 45.000 21.49 0.00 0.00 2.69
6170 6593 2.435372 AACAAGGAGCCAACTGTTGA 57.565 45.000 21.49 0.00 0.00 3.18
6171 6594 2.689983 AGAAACAAGGAGCCAACTGTTG 59.310 45.455 13.50 13.50 0.00 3.33
6172 6595 2.689983 CAGAAACAAGGAGCCAACTGTT 59.310 45.455 0.00 0.00 0.00 3.16
6173 6596 2.092429 TCAGAAACAAGGAGCCAACTGT 60.092 45.455 0.00 0.00 0.00 3.55
6174 6597 2.575532 TCAGAAACAAGGAGCCAACTG 58.424 47.619 0.00 0.00 0.00 3.16
6175 6598 3.297134 TTCAGAAACAAGGAGCCAACT 57.703 42.857 0.00 0.00 0.00 3.16
6176 6599 4.112634 GTTTTCAGAAACAAGGAGCCAAC 58.887 43.478 0.00 0.00 43.65 3.77
6177 6600 4.385358 GTTTTCAGAAACAAGGAGCCAA 57.615 40.909 0.00 0.00 43.65 4.52
6192 6615 2.270352 ACGGAATGAGGCTGTTTTCA 57.730 45.000 0.00 0.00 0.00 2.69
6193 6616 2.095212 GGAACGGAATGAGGCTGTTTTC 60.095 50.000 0.00 0.00 35.13 2.29
6194 6617 1.886542 GGAACGGAATGAGGCTGTTTT 59.113 47.619 0.00 0.00 35.13 2.43
6195 6618 1.073923 AGGAACGGAATGAGGCTGTTT 59.926 47.619 0.00 0.00 35.13 2.83
6196 6619 0.693049 AGGAACGGAATGAGGCTGTT 59.307 50.000 0.00 0.00 37.54 3.16
6197 6620 0.693049 AAGGAACGGAATGAGGCTGT 59.307 50.000 0.00 0.00 0.00 4.40
6198 6621 1.740025 GAAAGGAACGGAATGAGGCTG 59.260 52.381 0.00 0.00 0.00 4.85
6199 6622 1.351017 TGAAAGGAACGGAATGAGGCT 59.649 47.619 0.00 0.00 0.00 4.58
6200 6623 1.821216 TGAAAGGAACGGAATGAGGC 58.179 50.000 0.00 0.00 0.00 4.70
6201 6624 6.543831 AGAAATATGAAAGGAACGGAATGAGG 59.456 38.462 0.00 0.00 0.00 3.86
6202 6625 7.497249 AGAGAAATATGAAAGGAACGGAATGAG 59.503 37.037 0.00 0.00 0.00 2.90
6203 6626 7.338710 AGAGAAATATGAAAGGAACGGAATGA 58.661 34.615 0.00 0.00 0.00 2.57
6204 6627 7.559590 AGAGAAATATGAAAGGAACGGAATG 57.440 36.000 0.00 0.00 0.00 2.67
6205 6628 7.415653 GCAAGAGAAATATGAAAGGAACGGAAT 60.416 37.037 0.00 0.00 0.00 3.01
6206 6629 6.128007 GCAAGAGAAATATGAAAGGAACGGAA 60.128 38.462 0.00 0.00 0.00 4.30
6207 6630 5.354234 GCAAGAGAAATATGAAAGGAACGGA 59.646 40.000 0.00 0.00 0.00 4.69
6208 6631 5.449177 GGCAAGAGAAATATGAAAGGAACGG 60.449 44.000 0.00 0.00 0.00 4.44
6209 6632 5.123820 TGGCAAGAGAAATATGAAAGGAACG 59.876 40.000 0.00 0.00 0.00 3.95
6210 6633 6.071952 TGTGGCAAGAGAAATATGAAAGGAAC 60.072 38.462 0.00 0.00 0.00 3.62
6211 6634 6.009589 TGTGGCAAGAGAAATATGAAAGGAA 58.990 36.000 0.00 0.00 0.00 3.36
6212 6635 5.569355 TGTGGCAAGAGAAATATGAAAGGA 58.431 37.500 0.00 0.00 0.00 3.36
6213 6636 5.902613 TGTGGCAAGAGAAATATGAAAGG 57.097 39.130 0.00 0.00 0.00 3.11
6214 6637 6.151648 TCCTTGTGGCAAGAGAAATATGAAAG 59.848 38.462 10.12 0.00 0.00 2.62
6215 6638 6.009589 TCCTTGTGGCAAGAGAAATATGAAA 58.990 36.000 10.12 0.00 0.00 2.69
6216 6639 5.569355 TCCTTGTGGCAAGAGAAATATGAA 58.431 37.500 10.12 0.00 0.00 2.57
6217 6640 5.178096 TCCTTGTGGCAAGAGAAATATGA 57.822 39.130 10.12 0.00 0.00 2.15
6218 6641 4.946157 ACTCCTTGTGGCAAGAGAAATATG 59.054 41.667 10.12 0.00 0.00 1.78
6219 6642 5.184892 ACTCCTTGTGGCAAGAGAAATAT 57.815 39.130 10.12 0.00 0.00 1.28
6220 6643 4.640771 ACTCCTTGTGGCAAGAGAAATA 57.359 40.909 10.12 0.00 0.00 1.40
6221 6644 3.515602 ACTCCTTGTGGCAAGAGAAAT 57.484 42.857 10.12 0.00 0.00 2.17
6222 6645 4.134563 GTTACTCCTTGTGGCAAGAGAAA 58.865 43.478 10.12 0.00 0.00 2.52
6223 6646 3.135712 TGTTACTCCTTGTGGCAAGAGAA 59.864 43.478 10.12 0.00 0.00 2.87
6224 6647 2.703536 TGTTACTCCTTGTGGCAAGAGA 59.296 45.455 10.12 5.48 0.00 3.10
6225 6648 3.126001 TGTTACTCCTTGTGGCAAGAG 57.874 47.619 10.12 8.11 0.00 2.85
6226 6649 3.411446 CATGTTACTCCTTGTGGCAAGA 58.589 45.455 10.12 0.00 0.00 3.02
6227 6650 2.489329 CCATGTTACTCCTTGTGGCAAG 59.511 50.000 0.00 2.16 0.00 4.01
6228 6651 2.158534 ACCATGTTACTCCTTGTGGCAA 60.159 45.455 0.00 0.00 0.00 4.52
6229 6652 1.423541 ACCATGTTACTCCTTGTGGCA 59.576 47.619 0.00 0.00 0.00 4.92
6230 6653 2.084546 GACCATGTTACTCCTTGTGGC 58.915 52.381 0.00 0.00 0.00 5.01
6231 6654 2.305927 AGGACCATGTTACTCCTTGTGG 59.694 50.000 0.00 0.00 29.41 4.17
6232 6655 3.703001 AGGACCATGTTACTCCTTGTG 57.297 47.619 0.00 0.00 29.41 3.33
6233 6656 4.019591 GGTAAGGACCATGTTACTCCTTGT 60.020 45.833 12.16 0.00 46.12 3.16
6234 6657 4.514401 GGTAAGGACCATGTTACTCCTTG 58.486 47.826 12.16 0.00 46.12 3.61
6235 6658 4.838904 GGTAAGGACCATGTTACTCCTT 57.161 45.455 8.37 8.37 46.12 3.36
6236 6659 6.632009 TGGGGTAAGGACCATGTTACTCCT 62.632 50.000 18.65 8.06 46.28 3.69
6247 6670 3.007323 AGGCGTGGGGTAAGGACC 61.007 66.667 0.00 0.00 46.13 4.46
6248 6671 2.267961 CAGGCGTGGGGTAAGGAC 59.732 66.667 0.00 0.00 0.00 3.85
6249 6672 2.203877 ACAGGCGTGGGGTAAGGA 60.204 61.111 11.67 0.00 0.00 3.36
6250 6673 2.267961 GACAGGCGTGGGGTAAGG 59.732 66.667 11.67 0.00 0.00 2.69
6251 6674 2.240162 GAGGACAGGCGTGGGGTAAG 62.240 65.000 11.67 0.00 0.00 2.34
6252 6675 2.203877 AGGACAGGCGTGGGGTAA 60.204 61.111 11.67 0.00 0.00 2.85
6253 6676 2.682494 GAGGACAGGCGTGGGGTA 60.682 66.667 11.67 0.00 0.00 3.69
6254 6677 4.954118 TGAGGACAGGCGTGGGGT 62.954 66.667 11.67 0.00 0.00 4.95
6255 6678 4.087892 CTGAGGACAGGCGTGGGG 62.088 72.222 11.67 0.00 40.14 4.96
6263 6686 1.078567 GCTTGGCTCCTGAGGACAG 60.079 63.158 0.00 0.00 43.12 3.51
6264 6687 2.947532 CGCTTGGCTCCTGAGGACA 61.948 63.158 0.00 0.00 0.00 4.02
6265 6688 2.125350 CGCTTGGCTCCTGAGGAC 60.125 66.667 0.00 0.00 0.00 3.85
6266 6689 4.087892 GCGCTTGGCTCCTGAGGA 62.088 66.667 0.00 0.00 39.11 3.71
6275 6698 3.869272 CATCGACAGGCGCTTGGC 61.869 66.667 24.27 20.80 40.61 4.52
6276 6699 1.970917 GAACATCGACAGGCGCTTGG 61.971 60.000 24.27 6.96 40.61 3.61
6277 6700 1.016130 AGAACATCGACAGGCGCTTG 61.016 55.000 19.01 19.01 40.61 4.01
6278 6701 1.016130 CAGAACATCGACAGGCGCTT 61.016 55.000 7.64 0.00 40.61 4.68
6279 6702 1.446792 CAGAACATCGACAGGCGCT 60.447 57.895 7.64 0.00 40.61 5.92
6280 6703 2.456119 CCAGAACATCGACAGGCGC 61.456 63.158 0.00 0.00 40.61 6.53
6281 6704 2.456119 GCCAGAACATCGACAGGCG 61.456 63.158 0.00 0.00 42.69 5.52
6282 6705 0.955428 TTGCCAGAACATCGACAGGC 60.955 55.000 0.00 0.00 42.32 4.85
6283 6706 1.522668 TTTGCCAGAACATCGACAGG 58.477 50.000 0.00 0.00 0.00 4.00
6284 6707 2.159476 CCATTTGCCAGAACATCGACAG 60.159 50.000 0.00 0.00 0.00 3.51
6285 6708 1.811965 CCATTTGCCAGAACATCGACA 59.188 47.619 0.00 0.00 0.00 4.35
6286 6709 1.468054 GCCATTTGCCAGAACATCGAC 60.468 52.381 0.00 0.00 0.00 4.20
6287 6710 0.810648 GCCATTTGCCAGAACATCGA 59.189 50.000 0.00 0.00 0.00 3.59
6288 6711 0.523968 CGCCATTTGCCAGAACATCG 60.524 55.000 0.00 0.00 36.24 3.84
6289 6712 0.810648 TCGCCATTTGCCAGAACATC 59.189 50.000 0.00 0.00 36.24 3.06
6290 6713 1.406539 GATCGCCATTTGCCAGAACAT 59.593 47.619 0.00 0.00 36.24 2.71
6291 6714 0.810648 GATCGCCATTTGCCAGAACA 59.189 50.000 0.00 0.00 36.24 3.18
6292 6715 0.248215 CGATCGCCATTTGCCAGAAC 60.248 55.000 0.26 0.00 36.24 3.01
6293 6716 0.676466 ACGATCGCCATTTGCCAGAA 60.676 50.000 16.60 0.00 36.24 3.02
6294 6717 0.176910 TACGATCGCCATTTGCCAGA 59.823 50.000 16.60 0.00 36.24 3.86
6295 6718 0.583438 CTACGATCGCCATTTGCCAG 59.417 55.000 16.60 0.00 36.24 4.85
6296 6719 0.176910 TCTACGATCGCCATTTGCCA 59.823 50.000 16.60 0.00 36.24 4.92
6297 6720 1.261619 CTTCTACGATCGCCATTTGCC 59.738 52.381 16.60 0.00 36.24 4.52
6298 6721 2.201732 TCTTCTACGATCGCCATTTGC 58.798 47.619 16.60 0.00 0.00 3.68
6299 6722 3.706698 TCTCTTCTACGATCGCCATTTG 58.293 45.455 16.60 1.61 0.00 2.32
6300 6723 3.797184 GCTCTCTTCTACGATCGCCATTT 60.797 47.826 16.60 0.00 0.00 2.32
6301 6724 2.287909 GCTCTCTTCTACGATCGCCATT 60.288 50.000 16.60 0.00 0.00 3.16
6302 6725 1.268352 GCTCTCTTCTACGATCGCCAT 59.732 52.381 16.60 0.00 0.00 4.40
6303 6726 0.663688 GCTCTCTTCTACGATCGCCA 59.336 55.000 16.60 1.97 0.00 5.69
6304 6727 0.663688 TGCTCTCTTCTACGATCGCC 59.336 55.000 16.60 0.00 0.00 5.54
6305 6728 1.749153 GTGCTCTCTTCTACGATCGC 58.251 55.000 16.60 0.00 0.00 4.58
6306 6729 1.333347 CCGTGCTCTCTTCTACGATCG 60.333 57.143 14.88 14.88 38.72 3.69
6307 6730 1.002251 CCCGTGCTCTCTTCTACGATC 60.002 57.143 0.00 0.00 38.72 3.69
6308 6731 1.025812 CCCGTGCTCTCTTCTACGAT 58.974 55.000 0.00 0.00 38.72 3.73
6309 6732 1.654954 GCCCGTGCTCTCTTCTACGA 61.655 60.000 0.00 0.00 38.72 3.43
6310 6733 1.226717 GCCCGTGCTCTCTTCTACG 60.227 63.158 0.00 0.00 36.39 3.51
6311 6734 4.816990 GCCCGTGCTCTCTTCTAC 57.183 61.111 0.00 0.00 33.53 2.59
6326 6749 3.883549 GCTCCCCAGGGATCAGCC 61.884 72.222 7.25 0.00 44.24 4.85
6327 6750 3.092511 TGCTCCCCAGGGATCAGC 61.093 66.667 7.25 12.00 44.24 4.26
6329 6752 3.092511 GCTGCTCCCCAGGGATCA 61.093 66.667 7.25 8.38 44.24 2.92
6343 6766 2.667536 AGAGGTTGTGCAGCGCTG 60.668 61.111 32.83 32.83 30.92 5.18
6344 6767 2.358003 GAGAGGTTGTGCAGCGCT 60.358 61.111 2.64 2.64 35.46 5.92
6345 6768 3.426568 GGAGAGGTTGTGCAGCGC 61.427 66.667 0.00 0.00 0.00 5.92
6346 6769 1.376424 ATGGAGAGGTTGTGCAGCG 60.376 57.895 0.00 0.00 0.00 5.18
6347 6770 0.321919 TCATGGAGAGGTTGTGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
6348 6771 1.735386 CTCATGGAGAGGTTGTGCAG 58.265 55.000 0.00 0.00 40.84 4.41
6349 6772 3.942351 CTCATGGAGAGGTTGTGCA 57.058 52.632 0.00 0.00 40.84 4.57
6357 6780 2.744494 GCAAAGGTAGCCTCATGGAGAG 60.744 54.545 0.00 0.00 44.31 3.20
6358 6781 1.210478 GCAAAGGTAGCCTCATGGAGA 59.790 52.381 0.00 0.00 30.89 3.71
6359 6782 1.673168 GCAAAGGTAGCCTCATGGAG 58.327 55.000 0.00 0.00 30.89 3.86
6360 6783 3.882131 GCAAAGGTAGCCTCATGGA 57.118 52.632 0.00 0.00 30.89 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.