Multiple sequence alignment - TraesCS2D01G305800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G305800 chr2D 100.000 3414 0 0 1 3414 391397434 391394021 0.000000e+00 6305.0
1 TraesCS2D01G305800 chr2D 90.275 1419 105 13 1126 2543 392683881 392685267 0.000000e+00 1825.0
2 TraesCS2D01G305800 chr2D 92.570 323 22 2 142 463 55927081 55927402 2.400000e-126 462.0
3 TraesCS2D01G305800 chr2D 92.486 173 13 0 1 173 55926910 55927082 7.320000e-62 248.0
4 TraesCS2D01G305800 chr2B 92.940 1813 102 11 990 2791 462953896 462952099 0.000000e+00 2615.0
5 TraesCS2D01G305800 chr2B 90.741 864 59 5 1467 2329 464603822 464604665 0.000000e+00 1133.0
6 TraesCS2D01G305800 chr2B 92.410 527 28 8 2894 3413 462952103 462951582 0.000000e+00 741.0
7 TraesCS2D01G305800 chr2B 91.925 322 24 2 145 464 111673328 111673007 1.870000e-122 449.0
8 TraesCS2D01G305800 chr2B 89.174 351 34 4 1126 1474 464598452 464598800 5.230000e-118 435.0
9 TraesCS2D01G305800 chr2B 87.342 237 14 7 719 948 462954122 462953895 1.220000e-64 257.0
10 TraesCS2D01G305800 chr2B 94.079 152 9 0 1 152 111673501 111673350 7.370000e-57 231.0
11 TraesCS2D01G305800 chr2A 94.705 1322 50 11 998 2311 528126414 528125105 0.000000e+00 2036.0
12 TraesCS2D01G305800 chr2A 90.467 1542 108 22 1126 2645 530675855 530677379 0.000000e+00 1997.0
13 TraesCS2D01G305800 chr2A 85.414 857 82 23 2307 3148 528125072 528124244 0.000000e+00 850.0
14 TraesCS2D01G305800 chr2A 90.625 320 20 7 145 462 733436677 733436366 1.900000e-112 416.0
15 TraesCS2D01G305800 chr2A 86.831 243 22 8 466 706 528139345 528139111 2.610000e-66 263.0
16 TraesCS2D01G305800 chr2A 90.526 190 10 5 820 1008 528127404 528127222 9.460000e-61 244.0
17 TraesCS2D01G305800 chr2A 94.118 153 9 0 1 153 542462148 542461996 2.050000e-57 233.0
18 TraesCS2D01G305800 chr2A 89.831 177 14 2 1 173 733436854 733436678 1.230000e-54 224.0
19 TraesCS2D01G305800 chr2A 89.091 165 14 3 3251 3414 528123951 528123790 5.780000e-48 202.0
20 TraesCS2D01G305800 chr2A 96.154 78 3 0 721 798 528136698 528136621 9.940000e-26 128.0
21 TraesCS2D01G305800 chr3D 84.258 1207 149 23 1063 2245 484730499 484729310 0.000000e+00 1138.0
22 TraesCS2D01G305800 chr3D 85.300 483 37 6 1 456 332161277 332160802 5.160000e-128 468.0
23 TraesCS2D01G305800 chr3D 93.642 173 11 0 1 173 48838216 48838388 3.380000e-65 259.0
24 TraesCS2D01G305800 chr3A 83.402 1205 160 23 1063 2245 627789552 627788366 0.000000e+00 1081.0
25 TraesCS2D01G305800 chr3A 90.154 325 28 4 142 464 211900890 211901212 1.470000e-113 420.0
26 TraesCS2D01G305800 chr3B 83.182 1213 155 25 1063 2245 647477650 647476457 0.000000e+00 1064.0
27 TraesCS2D01G305800 chr1D 78.284 944 196 4 1226 2169 447911222 447912156 1.750000e-167 599.0
28 TraesCS2D01G305800 chr1D 88.081 495 27 13 1 464 458823089 458823582 2.980000e-155 558.0
29 TraesCS2D01G305800 chr1A 91.875 320 23 3 142 460 49290671 49290988 8.690000e-121 444.0
30 TraesCS2D01G305800 chr1A 91.279 172 15 0 1 172 49290501 49290672 5.700000e-58 235.0
31 TraesCS2D01G305800 chr1A 94.595 37 2 0 3144 3180 64712000 64711964 1.320000e-04 58.4
32 TraesCS2D01G305800 chr1B 91.186 295 22 4 142 434 138737197 138737489 6.860000e-107 398.0
33 TraesCS2D01G305800 chr6D 89.164 323 28 7 142 460 315628228 315627909 2.470000e-106 396.0
34 TraesCS2D01G305800 chr6D 95.333 150 7 0 4 153 315628396 315628247 4.400000e-59 239.0
35 TraesCS2D01G305800 chr6D 100.000 33 0 0 3144 3176 289215071 289215039 1.020000e-05 62.1
36 TraesCS2D01G305800 chr5D 90.173 173 17 0 1 173 482140125 482140297 3.430000e-55 226.0
37 TraesCS2D01G305800 chr4B 100.000 34 0 0 3144 3177 187728139 187728106 2.840000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G305800 chr2D 391394021 391397434 3413 True 6305.000000 6305 100.000000 1 3414 1 chr2D.!!$R1 3413
1 TraesCS2D01G305800 chr2D 392683881 392685267 1386 False 1825.000000 1825 90.275000 1126 2543 1 chr2D.!!$F1 1417
2 TraesCS2D01G305800 chr2B 462951582 462954122 2540 True 1204.333333 2615 90.897333 719 3413 3 chr2B.!!$R2 2694
3 TraesCS2D01G305800 chr2B 464603822 464604665 843 False 1133.000000 1133 90.741000 1467 2329 1 chr2B.!!$F2 862
4 TraesCS2D01G305800 chr2A 530675855 530677379 1524 False 1997.000000 1997 90.467000 1126 2645 1 chr2A.!!$F1 1519
5 TraesCS2D01G305800 chr2A 528123790 528127404 3614 True 833.000000 2036 89.934000 820 3414 4 chr2A.!!$R2 2594
6 TraesCS2D01G305800 chr3D 484729310 484730499 1189 True 1138.000000 1138 84.258000 1063 2245 1 chr3D.!!$R2 1182
7 TraesCS2D01G305800 chr3A 627788366 627789552 1186 True 1081.000000 1081 83.402000 1063 2245 1 chr3A.!!$R1 1182
8 TraesCS2D01G305800 chr3B 647476457 647477650 1193 True 1064.000000 1064 83.182000 1063 2245 1 chr3B.!!$R1 1182
9 TraesCS2D01G305800 chr1D 447911222 447912156 934 False 599.000000 599 78.284000 1226 2169 1 chr1D.!!$F1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1000 0.035036 AGTCTCGTCTGACAGTCCGA 59.965 55.0 15.57 15.57 39.27 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2807 3825 0.044246 GACGCGTTTGTGCTTTTTGC 60.044 50.0 15.53 0.0 43.25 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.506838 CAAGCTAGTTGTTACGCTCATC 57.493 45.455 0.00 0.00 31.30 2.92
28 29 3.166489 AGCTAGTTGTTACGCTCATCC 57.834 47.619 0.00 0.00 0.00 3.51
29 30 2.159085 AGCTAGTTGTTACGCTCATCCC 60.159 50.000 0.00 0.00 0.00 3.85
30 31 2.159085 GCTAGTTGTTACGCTCATCCCT 60.159 50.000 0.00 0.00 0.00 4.20
31 32 2.674796 AGTTGTTACGCTCATCCCTC 57.325 50.000 0.00 0.00 0.00 4.30
32 33 2.180276 AGTTGTTACGCTCATCCCTCT 58.820 47.619 0.00 0.00 0.00 3.69
33 34 2.093973 AGTTGTTACGCTCATCCCTCTG 60.094 50.000 0.00 0.00 0.00 3.35
34 35 0.175760 TGTTACGCTCATCCCTCTGC 59.824 55.000 0.00 0.00 0.00 4.26
35 36 0.175760 GTTACGCTCATCCCTCTGCA 59.824 55.000 0.00 0.00 0.00 4.41
36 37 0.901827 TTACGCTCATCCCTCTGCAA 59.098 50.000 0.00 0.00 0.00 4.08
37 38 0.175760 TACGCTCATCCCTCTGCAAC 59.824 55.000 0.00 0.00 0.00 4.17
38 39 1.078918 CGCTCATCCCTCTGCAACA 60.079 57.895 0.00 0.00 0.00 3.33
39 40 0.674581 CGCTCATCCCTCTGCAACAA 60.675 55.000 0.00 0.00 0.00 2.83
40 41 0.807496 GCTCATCCCTCTGCAACAAC 59.193 55.000 0.00 0.00 0.00 3.32
41 42 1.081892 CTCATCCCTCTGCAACAACG 58.918 55.000 0.00 0.00 0.00 4.10
42 43 0.684535 TCATCCCTCTGCAACAACGA 59.315 50.000 0.00 0.00 0.00 3.85
43 44 0.798776 CATCCCTCTGCAACAACGAC 59.201 55.000 0.00 0.00 0.00 4.34
44 45 0.687354 ATCCCTCTGCAACAACGACT 59.313 50.000 0.00 0.00 0.00 4.18
45 46 0.468226 TCCCTCTGCAACAACGACTT 59.532 50.000 0.00 0.00 0.00 3.01
46 47 1.134220 TCCCTCTGCAACAACGACTTT 60.134 47.619 0.00 0.00 0.00 2.66
47 48 2.103432 TCCCTCTGCAACAACGACTTTA 59.897 45.455 0.00 0.00 0.00 1.85
48 49 3.074412 CCCTCTGCAACAACGACTTTAT 58.926 45.455 0.00 0.00 0.00 1.40
49 50 3.502211 CCCTCTGCAACAACGACTTTATT 59.498 43.478 0.00 0.00 0.00 1.40
50 51 4.466828 CCTCTGCAACAACGACTTTATTG 58.533 43.478 0.00 0.00 0.00 1.90
51 52 3.884169 TCTGCAACAACGACTTTATTGC 58.116 40.909 0.99 0.99 44.66 3.56
55 56 4.746975 GCAACAACGACTTTATTGCAAAC 58.253 39.130 1.71 0.00 44.01 2.93
56 57 4.317769 GCAACAACGACTTTATTGCAAACC 60.318 41.667 1.71 0.00 44.01 3.27
57 58 3.623863 ACAACGACTTTATTGCAAACCG 58.376 40.909 1.71 3.73 0.00 4.44
58 59 2.325509 ACGACTTTATTGCAAACCGC 57.674 45.000 1.71 0.00 42.89 5.68
59 60 1.877443 ACGACTTTATTGCAAACCGCT 59.123 42.857 1.71 0.00 43.06 5.52
60 61 2.095919 ACGACTTTATTGCAAACCGCTC 60.096 45.455 1.71 0.00 43.06 5.03
61 62 2.159627 CGACTTTATTGCAAACCGCTCT 59.840 45.455 1.71 0.00 43.06 4.09
62 63 3.492313 GACTTTATTGCAAACCGCTCTG 58.508 45.455 1.71 0.00 43.06 3.35
63 64 3.146066 ACTTTATTGCAAACCGCTCTGA 58.854 40.909 1.71 0.00 43.06 3.27
64 65 3.568007 ACTTTATTGCAAACCGCTCTGAA 59.432 39.130 1.71 0.00 43.06 3.02
65 66 3.829886 TTATTGCAAACCGCTCTGAAG 57.170 42.857 1.71 0.00 43.06 3.02
66 67 0.242017 ATTGCAAACCGCTCTGAAGC 59.758 50.000 1.71 0.00 45.56 3.86
76 77 1.630148 GCTCTGAAGCGTTATCGTGT 58.370 50.000 0.00 0.00 39.10 4.49
77 78 1.321743 GCTCTGAAGCGTTATCGTGTG 59.678 52.381 0.00 0.00 39.10 3.82
78 79 2.863739 CTCTGAAGCGTTATCGTGTGA 58.136 47.619 0.00 0.00 39.49 3.58
79 80 2.592194 TCTGAAGCGTTATCGTGTGAC 58.408 47.619 0.00 0.00 39.49 3.67
80 81 2.228103 TCTGAAGCGTTATCGTGTGACT 59.772 45.455 0.00 0.00 39.49 3.41
81 82 2.987149 CTGAAGCGTTATCGTGTGACTT 59.013 45.455 0.00 0.00 39.49 3.01
82 83 2.984471 TGAAGCGTTATCGTGTGACTTC 59.016 45.455 0.00 0.00 39.49 3.01
83 84 2.717580 AGCGTTATCGTGTGACTTCA 57.282 45.000 0.00 0.00 39.49 3.02
84 85 2.325761 AGCGTTATCGTGTGACTTCAC 58.674 47.619 2.19 2.19 41.13 3.18
95 96 3.332761 GTGACTTCACGAATTGCAACA 57.667 42.857 0.00 0.00 37.10 3.33
96 97 3.690422 GTGACTTCACGAATTGCAACAA 58.310 40.909 0.00 0.00 37.10 2.83
97 98 3.725740 GTGACTTCACGAATTGCAACAAG 59.274 43.478 0.00 0.00 37.10 3.16
98 99 3.376859 TGACTTCACGAATTGCAACAAGT 59.623 39.130 0.00 3.47 0.00 3.16
99 100 4.142491 TGACTTCACGAATTGCAACAAGTT 60.142 37.500 0.00 0.00 0.00 2.66
100 101 4.104776 ACTTCACGAATTGCAACAAGTTG 58.895 39.130 0.00 8.53 43.14 3.16
101 102 3.077229 TCACGAATTGCAACAAGTTGG 57.923 42.857 14.16 0.00 40.74 3.77
102 103 2.425312 TCACGAATTGCAACAAGTTGGT 59.575 40.909 14.16 0.00 40.74 3.67
103 104 3.119316 TCACGAATTGCAACAAGTTGGTT 60.119 39.130 14.16 0.00 40.74 3.67
113 114 2.285827 CAAGTTGGTTGTTGCCGAAA 57.714 45.000 0.00 0.00 0.00 3.46
114 115 1.923864 CAAGTTGGTTGTTGCCGAAAC 59.076 47.619 0.00 0.00 39.41 2.78
122 123 2.325583 TGTTGCCGAAACAGAGACTT 57.674 45.000 0.13 0.00 43.96 3.01
123 124 2.639065 TGTTGCCGAAACAGAGACTTT 58.361 42.857 0.13 0.00 43.96 2.66
124 125 2.354510 TGTTGCCGAAACAGAGACTTTG 59.645 45.455 0.13 0.00 43.96 2.77
125 126 2.325583 TGCCGAAACAGAGACTTTGT 57.674 45.000 0.00 0.00 0.00 2.83
126 127 1.939934 TGCCGAAACAGAGACTTTGTG 59.060 47.619 0.00 0.00 0.00 3.33
127 128 1.334149 GCCGAAACAGAGACTTTGTGC 60.334 52.381 0.00 0.00 0.00 4.57
128 129 1.070577 CCGAAACAGAGACTTTGTGCG 60.071 52.381 12.09 12.09 0.00 5.34
129 130 1.070577 CGAAACAGAGACTTTGTGCGG 60.071 52.381 11.51 0.00 0.00 5.69
130 131 2.210116 GAAACAGAGACTTTGTGCGGA 58.790 47.619 0.00 0.00 0.00 5.54
131 132 1.871080 AACAGAGACTTTGTGCGGAG 58.129 50.000 0.00 0.00 0.00 4.63
132 133 1.040646 ACAGAGACTTTGTGCGGAGA 58.959 50.000 0.00 0.00 0.00 3.71
133 134 1.269831 ACAGAGACTTTGTGCGGAGAC 60.270 52.381 0.00 0.00 0.00 3.36
149 150 4.066710 GGAGACGTGATGTAACTTTTGC 57.933 45.455 0.00 0.00 0.00 3.68
150 151 3.496884 GGAGACGTGATGTAACTTTTGCA 59.503 43.478 0.00 0.00 0.00 4.08
151 152 4.024387 GGAGACGTGATGTAACTTTTGCAA 60.024 41.667 0.00 0.00 0.00 4.08
152 153 4.844267 AGACGTGATGTAACTTTTGCAAC 58.156 39.130 0.00 0.00 0.00 4.17
153 154 4.574828 AGACGTGATGTAACTTTTGCAACT 59.425 37.500 0.00 0.00 0.00 3.16
154 155 4.597079 ACGTGATGTAACTTTTGCAACTG 58.403 39.130 0.00 0.00 0.00 3.16
155 156 3.421888 CGTGATGTAACTTTTGCAACTGC 59.578 43.478 0.00 0.00 42.50 4.40
156 157 3.421888 GTGATGTAACTTTTGCAACTGCG 59.578 43.478 0.00 0.00 45.83 5.18
157 158 2.483583 TGTAACTTTTGCAACTGCGG 57.516 45.000 0.00 0.00 45.83 5.69
158 159 1.746220 TGTAACTTTTGCAACTGCGGT 59.254 42.857 0.00 0.00 45.83 5.68
159 160 2.116366 GTAACTTTTGCAACTGCGGTG 58.884 47.619 0.00 0.00 45.83 4.94
160 161 0.814457 AACTTTTGCAACTGCGGTGA 59.186 45.000 0.00 0.00 45.83 4.02
161 162 1.032014 ACTTTTGCAACTGCGGTGAT 58.968 45.000 0.00 0.00 45.83 3.06
162 163 1.269206 ACTTTTGCAACTGCGGTGATG 60.269 47.619 0.00 0.00 45.83 3.07
163 164 0.743688 TTTTGCAACTGCGGTGATGT 59.256 45.000 0.00 0.00 45.83 3.06
164 165 0.310543 TTTGCAACTGCGGTGATGTC 59.689 50.000 0.00 0.00 45.83 3.06
165 166 1.840630 TTGCAACTGCGGTGATGTCG 61.841 55.000 0.00 0.00 45.83 4.35
195 196 7.713764 AAAATTGTCTCCACTTTTATGCAAC 57.286 32.000 0.00 0.00 33.28 4.17
196 197 6.403866 AATTGTCTCCACTTTTATGCAACA 57.596 33.333 0.00 0.00 0.00 3.33
197 198 5.843673 TTGTCTCCACTTTTATGCAACAA 57.156 34.783 0.00 0.00 0.00 2.83
198 199 5.843673 TGTCTCCACTTTTATGCAACAAA 57.156 34.783 0.00 0.00 0.00 2.83
199 200 5.830912 TGTCTCCACTTTTATGCAACAAAG 58.169 37.500 15.92 15.92 36.28 2.77
200 201 5.221224 TGTCTCCACTTTTATGCAACAAAGG 60.221 40.000 19.73 12.90 34.77 3.11
201 202 4.892934 TCTCCACTTTTATGCAACAAAGGT 59.107 37.500 19.73 13.42 34.77 3.50
202 203 6.016610 GTCTCCACTTTTATGCAACAAAGGTA 60.017 38.462 19.73 8.16 34.77 3.08
203 204 6.547880 TCTCCACTTTTATGCAACAAAGGTAA 59.452 34.615 19.73 8.62 34.77 2.85
204 205 7.232534 TCTCCACTTTTATGCAACAAAGGTAAT 59.767 33.333 19.73 2.40 34.77 1.89
205 206 7.151308 TCCACTTTTATGCAACAAAGGTAATG 58.849 34.615 19.73 11.55 34.77 1.90
206 207 6.928492 CCACTTTTATGCAACAAAGGTAATGT 59.072 34.615 19.73 2.23 34.77 2.71
207 208 7.440856 CCACTTTTATGCAACAAAGGTAATGTT 59.559 33.333 19.73 0.00 41.50 2.71
215 216 5.852282 AACAAAGGTAATGTTGCAGAAGT 57.148 34.783 0.00 0.00 39.43 3.01
216 217 5.852282 ACAAAGGTAATGTTGCAGAAGTT 57.148 34.783 0.00 0.00 0.00 2.66
217 218 6.220726 ACAAAGGTAATGTTGCAGAAGTTT 57.779 33.333 0.00 0.00 0.00 2.66
218 219 6.639563 ACAAAGGTAATGTTGCAGAAGTTTT 58.360 32.000 0.00 0.00 0.00 2.43
219 220 7.102993 ACAAAGGTAATGTTGCAGAAGTTTTT 58.897 30.769 0.00 0.00 0.00 1.94
238 239 3.747854 TTTTGCCTTCACATTCATGCA 57.252 38.095 0.00 0.00 0.00 3.96
239 240 3.747854 TTTGCCTTCACATTCATGCAA 57.252 38.095 0.00 0.00 36.98 4.08
240 241 3.965379 TTGCCTTCACATTCATGCAAT 57.035 38.095 0.00 0.00 34.14 3.56
251 252 5.509716 CATTCATGCAATGTAGGTGATGT 57.490 39.130 0.00 0.00 46.80 3.06
252 253 5.898174 CATTCATGCAATGTAGGTGATGTT 58.102 37.500 0.00 0.00 46.80 2.71
253 254 4.968812 TCATGCAATGTAGGTGATGTTG 57.031 40.909 0.00 0.00 46.80 3.33
254 255 3.129113 TCATGCAATGTAGGTGATGTTGC 59.871 43.478 0.00 0.00 46.80 4.17
255 256 1.468127 TGCAATGTAGGTGATGTTGCG 59.532 47.619 0.00 0.00 45.94 4.85
256 257 1.202177 GCAATGTAGGTGATGTTGCGG 60.202 52.381 0.00 0.00 36.27 5.69
257 258 1.401552 CAATGTAGGTGATGTTGCGGG 59.598 52.381 0.00 0.00 0.00 6.13
258 259 0.908910 ATGTAGGTGATGTTGCGGGA 59.091 50.000 0.00 0.00 0.00 5.14
259 260 0.249120 TGTAGGTGATGTTGCGGGAG 59.751 55.000 0.00 0.00 0.00 4.30
293 294 5.643379 ACATTACTGATGTTGCGGAATTT 57.357 34.783 0.00 0.00 46.80 1.82
294 295 6.751514 ACATTACTGATGTTGCGGAATTTA 57.248 33.333 0.00 0.00 46.80 1.40
295 296 7.333528 ACATTACTGATGTTGCGGAATTTAT 57.666 32.000 0.00 0.00 46.80 1.40
296 297 7.771183 ACATTACTGATGTTGCGGAATTTATT 58.229 30.769 0.00 0.00 46.80 1.40
297 298 8.250332 ACATTACTGATGTTGCGGAATTTATTT 58.750 29.630 0.00 0.00 46.80 1.40
298 299 8.533965 CATTACTGATGTTGCGGAATTTATTTG 58.466 33.333 0.00 0.00 0.00 2.32
299 300 4.864247 ACTGATGTTGCGGAATTTATTTGC 59.136 37.500 0.00 0.00 0.00 3.68
300 301 4.814147 TGATGTTGCGGAATTTATTTGCA 58.186 34.783 0.00 0.00 32.22 4.08
301 302 5.233225 TGATGTTGCGGAATTTATTTGCAA 58.767 33.333 0.00 0.00 38.34 4.08
302 303 5.873712 TGATGTTGCGGAATTTATTTGCAAT 59.126 32.000 0.00 0.00 40.73 3.56
303 304 5.527511 TGTTGCGGAATTTATTTGCAATG 57.472 34.783 0.00 0.00 40.73 2.82
304 305 5.233225 TGTTGCGGAATTTATTTGCAATGA 58.767 33.333 0.00 0.00 40.73 2.57
305 306 5.698089 TGTTGCGGAATTTATTTGCAATGAA 59.302 32.000 0.00 0.00 40.73 2.57
306 307 6.370994 TGTTGCGGAATTTATTTGCAATGAAT 59.629 30.769 0.00 0.00 40.73 2.57
307 308 7.547019 TGTTGCGGAATTTATTTGCAATGAATA 59.453 29.630 0.00 0.00 40.73 1.75
308 309 7.697352 TGCGGAATTTATTTGCAATGAATAG 57.303 32.000 0.00 0.00 31.51 1.73
309 310 6.700960 TGCGGAATTTATTTGCAATGAATAGG 59.299 34.615 0.00 0.00 31.51 2.57
310 311 6.146021 GCGGAATTTATTTGCAATGAATAGGG 59.854 38.462 0.00 0.00 0.00 3.53
311 312 7.209475 CGGAATTTATTTGCAATGAATAGGGT 58.791 34.615 0.00 0.00 0.00 4.34
312 313 7.710475 CGGAATTTATTTGCAATGAATAGGGTT 59.290 33.333 0.00 0.00 0.00 4.11
313 314 8.829612 GGAATTTATTTGCAATGAATAGGGTTG 58.170 33.333 0.00 0.00 0.00 3.77
314 315 8.735692 AATTTATTTGCAATGAATAGGGTTGG 57.264 30.769 0.00 0.00 0.00 3.77
315 316 3.608316 TTTGCAATGAATAGGGTTGGC 57.392 42.857 0.00 0.00 0.00 4.52
316 317 1.484038 TGCAATGAATAGGGTTGGCC 58.516 50.000 0.00 0.00 0.00 5.36
327 328 1.912971 GGTTGGCCCAGGTAGTAGG 59.087 63.158 0.00 0.00 0.00 3.18
332 333 2.371043 CCCAGGTAGTAGGGCCCA 59.629 66.667 27.56 7.27 38.44 5.36
333 334 1.766461 CCCAGGTAGTAGGGCCCAG 60.766 68.421 27.56 2.48 38.44 4.45
334 335 1.766461 CCAGGTAGTAGGGCCCAGG 60.766 68.421 27.56 8.31 0.00 4.45
335 336 2.040779 AGGTAGTAGGGCCCAGGC 60.041 66.667 27.56 13.62 41.06 4.85
336 337 2.366435 GGTAGTAGGGCCCAGGCA 60.366 66.667 27.56 2.74 44.11 4.75
337 338 2.743179 GGTAGTAGGGCCCAGGCAC 61.743 68.421 27.56 16.05 46.56 5.01
347 348 3.663176 CCAGGCACGTGCACCAAG 61.663 66.667 38.60 22.64 44.36 3.61
348 349 2.901840 CAGGCACGTGCACCAAGT 60.902 61.111 38.60 14.88 44.36 3.16
349 350 2.901840 AGGCACGTGCACCAAGTG 60.902 61.111 38.60 14.65 44.28 3.16
350 351 3.209097 GGCACGTGCACCAAGTGT 61.209 61.111 38.60 6.83 43.59 3.55
351 352 2.770589 GGCACGTGCACCAAGTGTT 61.771 57.895 38.60 0.00 43.59 3.32
352 353 1.298339 GCACGTGCACCAAGTGTTC 60.298 57.895 34.52 0.19 43.59 3.18
353 354 1.987704 GCACGTGCACCAAGTGTTCA 61.988 55.000 34.52 0.00 43.59 3.18
354 355 0.662619 CACGTGCACCAAGTGTTCAT 59.337 50.000 12.15 0.00 38.61 2.57
355 356 0.662619 ACGTGCACCAAGTGTTCATG 59.337 50.000 12.15 0.00 35.75 3.07
356 357 0.661187 CGTGCACCAAGTGTTCATGC 60.661 55.000 12.15 0.00 35.75 4.06
357 358 0.661187 GTGCACCAAGTGTTCATGCG 60.661 55.000 5.22 0.00 39.18 4.73
358 359 0.817229 TGCACCAAGTGTTCATGCGA 60.817 50.000 0.00 0.00 39.18 5.10
359 360 0.110056 GCACCAAGTGTTCATGCGAG 60.110 55.000 0.00 0.00 35.75 5.03
360 361 1.229428 CACCAAGTGTTCATGCGAGT 58.771 50.000 0.00 0.00 0.00 4.18
361 362 1.195448 CACCAAGTGTTCATGCGAGTC 59.805 52.381 0.00 0.00 0.00 3.36
362 363 0.439985 CCAAGTGTTCATGCGAGTCG 59.560 55.000 8.54 8.54 0.00 4.18
381 382 4.148825 GCGGCCTCACGATCCAGT 62.149 66.667 0.00 0.00 35.47 4.00
382 383 2.202797 CGGCCTCACGATCCAGTG 60.203 66.667 0.00 0.00 43.11 3.66
383 384 2.187946 GGCCTCACGATCCAGTGG 59.812 66.667 1.40 1.40 42.10 4.00
384 385 2.359169 GGCCTCACGATCCAGTGGA 61.359 63.158 15.88 15.88 42.10 4.02
385 386 1.153549 GCCTCACGATCCAGTGGAC 60.154 63.158 15.86 7.83 42.10 4.02
386 387 1.517832 CCTCACGATCCAGTGGACC 59.482 63.158 15.86 2.75 42.10 4.46
387 388 1.257750 CCTCACGATCCAGTGGACCA 61.258 60.000 15.86 0.00 42.10 4.02
388 389 0.608130 CTCACGATCCAGTGGACCAA 59.392 55.000 15.86 0.00 42.10 3.67
389 390 1.208052 CTCACGATCCAGTGGACCAAT 59.792 52.381 15.86 0.00 42.10 3.16
390 391 1.066215 TCACGATCCAGTGGACCAATG 60.066 52.381 15.86 15.08 42.10 2.82
391 392 0.392998 ACGATCCAGTGGACCAATGC 60.393 55.000 15.86 2.30 32.98 3.56
392 393 1.431488 CGATCCAGTGGACCAATGCG 61.431 60.000 15.86 10.82 32.98 4.73
393 394 0.392998 GATCCAGTGGACCAATGCGT 60.393 55.000 15.86 6.70 32.98 5.24
394 395 0.392998 ATCCAGTGGACCAATGCGTC 60.393 55.000 15.86 0.00 32.98 5.19
395 396 2.390599 CCAGTGGACCAATGCGTCG 61.391 63.158 16.55 0.00 33.30 5.12
396 397 2.742372 AGTGGACCAATGCGTCGC 60.742 61.111 11.10 11.10 33.30 5.19
397 398 4.147322 GTGGACCAATGCGTCGCG 62.147 66.667 13.38 0.00 33.30 5.87
398 399 4.365505 TGGACCAATGCGTCGCGA 62.366 61.111 13.38 3.71 33.30 5.87
399 400 2.890474 GGACCAATGCGTCGCGAT 60.890 61.111 14.06 4.57 33.30 4.58
400 401 2.621000 GACCAATGCGTCGCGATC 59.379 61.111 14.06 8.36 0.00 3.69
401 402 1.878522 GACCAATGCGTCGCGATCT 60.879 57.895 14.06 0.00 0.00 2.75
402 403 2.082437 GACCAATGCGTCGCGATCTG 62.082 60.000 14.06 6.86 0.00 2.90
403 404 1.878069 CCAATGCGTCGCGATCTGA 60.878 57.895 14.06 0.00 0.00 3.27
404 405 1.217585 CCAATGCGTCGCGATCTGAT 61.218 55.000 14.06 0.00 0.00 2.90
405 406 0.111398 CAATGCGTCGCGATCTGATG 60.111 55.000 14.06 5.91 0.00 3.07
406 407 1.217585 AATGCGTCGCGATCTGATGG 61.218 55.000 14.06 0.00 0.00 3.51
407 408 3.696426 GCGTCGCGATCTGATGGC 61.696 66.667 14.06 13.82 0.00 4.40
408 409 3.032609 CGTCGCGATCTGATGGCC 61.033 66.667 14.06 0.00 0.00 5.36
409 410 3.032609 GTCGCGATCTGATGGCCG 61.033 66.667 14.06 12.74 0.00 6.13
410 411 4.950062 TCGCGATCTGATGGCCGC 62.950 66.667 17.28 14.00 43.68 6.53
414 415 4.950062 GATCTGATGGCCGCGCGA 62.950 66.667 34.63 12.79 0.00 5.87
415 416 4.957684 ATCTGATGGCCGCGCGAG 62.958 66.667 34.63 22.41 0.00 5.03
425 426 4.246206 CGCGCGAGGACGGATGTA 62.246 66.667 28.94 0.00 40.15 2.29
426 427 2.353607 GCGCGAGGACGGATGTAG 60.354 66.667 12.10 0.00 40.15 2.74
427 428 2.353607 CGCGAGGACGGATGTAGC 60.354 66.667 0.00 0.00 40.15 3.58
428 429 2.353607 GCGAGGACGGATGTAGCG 60.354 66.667 0.00 0.00 40.15 4.26
429 430 2.831366 GCGAGGACGGATGTAGCGA 61.831 63.158 0.00 0.00 40.15 4.93
430 431 1.280142 CGAGGACGGATGTAGCGAG 59.720 63.158 0.00 0.00 35.72 5.03
431 432 1.158484 CGAGGACGGATGTAGCGAGA 61.158 60.000 0.00 0.00 35.72 4.04
432 433 1.022735 GAGGACGGATGTAGCGAGAA 58.977 55.000 0.00 0.00 0.00 2.87
433 434 1.404391 GAGGACGGATGTAGCGAGAAA 59.596 52.381 0.00 0.00 0.00 2.52
434 435 1.405821 AGGACGGATGTAGCGAGAAAG 59.594 52.381 0.00 0.00 0.00 2.62
435 436 1.404391 GGACGGATGTAGCGAGAAAGA 59.596 52.381 0.00 0.00 0.00 2.52
436 437 2.034812 GGACGGATGTAGCGAGAAAGAT 59.965 50.000 0.00 0.00 0.00 2.40
437 438 3.301706 GACGGATGTAGCGAGAAAGATC 58.698 50.000 0.00 0.00 0.00 2.75
438 439 2.287069 ACGGATGTAGCGAGAAAGATCG 60.287 50.000 0.00 0.00 45.48 3.69
439 440 2.667137 GGATGTAGCGAGAAAGATCGG 58.333 52.381 0.00 0.00 42.94 4.18
440 441 2.055100 GATGTAGCGAGAAAGATCGGC 58.945 52.381 0.00 0.00 42.94 5.54
441 442 0.102481 TGTAGCGAGAAAGATCGGCC 59.898 55.000 0.00 0.00 42.94 6.13
442 443 0.102481 GTAGCGAGAAAGATCGGCCA 59.898 55.000 2.24 0.00 42.94 5.36
443 444 0.385751 TAGCGAGAAAGATCGGCCAG 59.614 55.000 2.24 0.00 42.94 4.85
444 445 1.153549 GCGAGAAAGATCGGCCAGT 60.154 57.895 2.24 0.00 42.94 4.00
445 446 0.741221 GCGAGAAAGATCGGCCAGTT 60.741 55.000 2.24 0.00 42.94 3.16
446 447 1.002366 CGAGAAAGATCGGCCAGTTG 58.998 55.000 2.24 0.00 39.04 3.16
447 448 1.404181 CGAGAAAGATCGGCCAGTTGA 60.404 52.381 2.24 0.00 39.04 3.18
448 449 2.003301 GAGAAAGATCGGCCAGTTGAC 58.997 52.381 2.24 0.00 0.00 3.18
449 450 1.625818 AGAAAGATCGGCCAGTTGACT 59.374 47.619 2.24 0.00 0.00 3.41
450 451 1.734465 GAAAGATCGGCCAGTTGACTG 59.266 52.381 2.24 4.15 43.40 3.51
451 452 0.976641 AAGATCGGCCAGTTGACTGA 59.023 50.000 12.54 0.00 46.59 3.41
452 453 0.976641 AGATCGGCCAGTTGACTGAA 59.023 50.000 12.54 0.00 46.59 3.02
453 454 1.347707 AGATCGGCCAGTTGACTGAAA 59.652 47.619 12.54 0.00 46.59 2.69
454 455 1.734465 GATCGGCCAGTTGACTGAAAG 59.266 52.381 12.54 3.61 46.59 2.62
455 456 0.884704 TCGGCCAGTTGACTGAAAGC 60.885 55.000 12.54 7.39 46.59 3.51
456 457 0.886490 CGGCCAGTTGACTGAAAGCT 60.886 55.000 12.54 0.00 46.59 3.74
457 458 1.322442 GGCCAGTTGACTGAAAGCTT 58.678 50.000 12.54 0.00 46.59 3.74
458 459 1.683385 GGCCAGTTGACTGAAAGCTTT 59.317 47.619 12.53 12.53 46.59 3.51
459 460 2.101415 GGCCAGTTGACTGAAAGCTTTT 59.899 45.455 14.05 0.00 46.59 2.27
460 461 3.430790 GGCCAGTTGACTGAAAGCTTTTT 60.431 43.478 14.05 0.60 46.59 1.94
461 462 3.798878 GCCAGTTGACTGAAAGCTTTTTC 59.201 43.478 14.05 10.76 46.59 2.29
462 463 4.363138 CCAGTTGACTGAAAGCTTTTTCC 58.637 43.478 14.05 0.96 46.59 3.13
463 464 4.098501 CCAGTTGACTGAAAGCTTTTTCCT 59.901 41.667 14.05 2.06 46.59 3.36
464 465 5.299279 CCAGTTGACTGAAAGCTTTTTCCTA 59.701 40.000 14.05 0.00 46.59 2.94
465 466 6.183360 CCAGTTGACTGAAAGCTTTTTCCTAA 60.183 38.462 14.05 4.30 46.59 2.69
466 467 7.257722 CAGTTGACTGAAAGCTTTTTCCTAAA 58.742 34.615 14.05 1.96 46.59 1.85
467 468 7.759433 CAGTTGACTGAAAGCTTTTTCCTAAAA 59.241 33.333 14.05 0.38 46.59 1.52
468 469 8.478066 AGTTGACTGAAAGCTTTTTCCTAAAAT 58.522 29.630 14.05 1.39 37.60 1.82
469 470 9.098355 GTTGACTGAAAGCTTTTTCCTAAAATT 57.902 29.630 14.05 0.00 37.60 1.82
475 476 9.777297 TGAAAGCTTTTTCCTAAAATTATTGCT 57.223 25.926 14.05 0.00 33.66 3.91
497 498 9.868277 TTGCTATTTATTGGGTTAACAAAGATG 57.132 29.630 8.10 0.00 33.48 2.90
498 499 9.030452 TGCTATTTATTGGGTTAACAAAGATGT 57.970 29.630 8.10 0.00 43.14 3.06
499 500 9.516314 GCTATTTATTGGGTTAACAAAGATGTC 57.484 33.333 8.10 0.00 39.40 3.06
502 503 8.698973 TTTATTGGGTTAACAAAGATGTCTGA 57.301 30.769 8.10 0.00 39.40 3.27
503 504 6.575162 ATTGGGTTAACAAAGATGTCTGAC 57.425 37.500 8.10 0.00 39.40 3.51
504 505 4.062293 TGGGTTAACAAAGATGTCTGACG 58.938 43.478 8.10 0.00 39.40 4.35
505 506 4.062991 GGGTTAACAAAGATGTCTGACGT 58.937 43.478 8.10 1.35 39.40 4.34
506 507 5.221481 TGGGTTAACAAAGATGTCTGACGTA 60.221 40.000 8.10 0.00 39.40 3.57
507 508 5.119743 GGGTTAACAAAGATGTCTGACGTAC 59.880 44.000 8.10 0.00 39.40 3.67
508 509 5.924825 GGTTAACAAAGATGTCTGACGTACT 59.075 40.000 8.10 0.00 39.40 2.73
509 510 7.086376 GGTTAACAAAGATGTCTGACGTACTA 58.914 38.462 8.10 0.00 39.40 1.82
510 511 7.272948 GGTTAACAAAGATGTCTGACGTACTAG 59.727 40.741 8.10 0.00 39.40 2.57
511 512 6.570672 AACAAAGATGTCTGACGTACTAGA 57.429 37.500 1.83 0.00 39.40 2.43
512 513 6.761099 ACAAAGATGTCTGACGTACTAGAT 57.239 37.500 1.83 0.00 33.41 1.98
513 514 7.159322 ACAAAGATGTCTGACGTACTAGATT 57.841 36.000 1.83 0.00 33.41 2.40
514 515 7.603651 ACAAAGATGTCTGACGTACTAGATTT 58.396 34.615 1.83 0.00 33.41 2.17
515 516 8.088981 ACAAAGATGTCTGACGTACTAGATTTT 58.911 33.333 1.83 0.00 33.41 1.82
516 517 9.569167 CAAAGATGTCTGACGTACTAGATTTTA 57.431 33.333 1.83 0.00 0.00 1.52
517 518 9.570488 AAAGATGTCTGACGTACTAGATTTTAC 57.430 33.333 1.83 0.00 0.00 2.01
518 519 7.705214 AGATGTCTGACGTACTAGATTTTACC 58.295 38.462 1.83 0.00 0.00 2.85
519 520 6.822667 TGTCTGACGTACTAGATTTTACCA 57.177 37.500 0.00 0.00 0.00 3.25
520 521 7.400599 TGTCTGACGTACTAGATTTTACCAT 57.599 36.000 0.00 0.00 0.00 3.55
521 522 8.510243 TGTCTGACGTACTAGATTTTACCATA 57.490 34.615 0.00 0.00 0.00 2.74
522 523 8.618677 TGTCTGACGTACTAGATTTTACCATAG 58.381 37.037 0.00 0.00 0.00 2.23
523 524 8.834465 GTCTGACGTACTAGATTTTACCATAGA 58.166 37.037 0.00 0.00 0.00 1.98
524 525 9.399797 TCTGACGTACTAGATTTTACCATAGAA 57.600 33.333 0.00 0.00 0.00 2.10
565 566 9.435688 TGGACCATATATTGATCTCGTTTATTG 57.564 33.333 0.00 0.00 0.00 1.90
566 567 8.883731 GGACCATATATTGATCTCGTTTATTGG 58.116 37.037 0.00 0.00 0.00 3.16
567 568 9.436957 GACCATATATTGATCTCGTTTATTGGT 57.563 33.333 0.00 0.00 0.00 3.67
568 569 9.793259 ACCATATATTGATCTCGTTTATTGGTT 57.207 29.630 0.00 0.00 0.00 3.67
573 574 9.847224 ATATTGATCTCGTTTATTGGTTTAGGT 57.153 29.630 0.00 0.00 0.00 3.08
574 575 7.989416 TTGATCTCGTTTATTGGTTTAGGTT 57.011 32.000 0.00 0.00 0.00 3.50
575 576 7.372451 TGATCTCGTTTATTGGTTTAGGTTG 57.628 36.000 0.00 0.00 0.00 3.77
576 577 6.373216 TGATCTCGTTTATTGGTTTAGGTTGG 59.627 38.462 0.00 0.00 0.00 3.77
577 578 5.623169 TCTCGTTTATTGGTTTAGGTTGGT 58.377 37.500 0.00 0.00 0.00 3.67
578 579 6.063404 TCTCGTTTATTGGTTTAGGTTGGTT 58.937 36.000 0.00 0.00 0.00 3.67
579 580 6.546772 TCTCGTTTATTGGTTTAGGTTGGTTT 59.453 34.615 0.00 0.00 0.00 3.27
580 581 6.505272 TCGTTTATTGGTTTAGGTTGGTTTG 58.495 36.000 0.00 0.00 0.00 2.93
581 582 6.320672 TCGTTTATTGGTTTAGGTTGGTTTGA 59.679 34.615 0.00 0.00 0.00 2.69
582 583 7.014422 TCGTTTATTGGTTTAGGTTGGTTTGAT 59.986 33.333 0.00 0.00 0.00 2.57
583 584 7.654116 CGTTTATTGGTTTAGGTTGGTTTGATT 59.346 33.333 0.00 0.00 0.00 2.57
584 585 9.984190 GTTTATTGGTTTAGGTTGGTTTGATTA 57.016 29.630 0.00 0.00 0.00 1.75
589 590 8.894768 TGGTTTAGGTTGGTTTGATTAAAATG 57.105 30.769 0.00 0.00 0.00 2.32
590 591 8.705594 TGGTTTAGGTTGGTTTGATTAAAATGA 58.294 29.630 0.00 0.00 0.00 2.57
591 592 9.549078 GGTTTAGGTTGGTTTGATTAAAATGAA 57.451 29.630 0.00 0.00 0.00 2.57
596 597 8.898761 AGGTTGGTTTGATTAAAATGAAAAACC 58.101 29.630 10.67 10.67 44.33 3.27
597 598 7.853437 GGTTGGTTTGATTAAAATGAAAAACCG 59.147 33.333 9.76 0.00 46.10 4.44
598 599 8.604890 GTTGGTTTGATTAAAATGAAAAACCGA 58.395 29.630 9.76 5.94 46.10 4.69
599 600 8.359060 TGGTTTGATTAAAATGAAAAACCGAG 57.641 30.769 9.76 0.00 46.10 4.63
600 601 8.198109 TGGTTTGATTAAAATGAAAAACCGAGA 58.802 29.630 9.76 0.00 46.10 4.04
601 602 9.036671 GGTTTGATTAAAATGAAAAACCGAGAA 57.963 29.630 0.00 0.00 37.77 2.87
616 617 3.582444 CGAGAAAATCGCTTGAGGATG 57.418 47.619 0.00 0.00 45.98 3.51
617 618 2.286294 CGAGAAAATCGCTTGAGGATGG 59.714 50.000 0.00 0.00 45.98 3.51
618 619 2.019984 AGAAAATCGCTTGAGGATGGC 58.980 47.619 0.00 0.00 0.00 4.40
619 620 1.745087 GAAAATCGCTTGAGGATGGCA 59.255 47.619 0.00 0.00 0.00 4.92
620 621 1.386533 AAATCGCTTGAGGATGGCAG 58.613 50.000 0.00 0.00 0.00 4.85
621 622 0.465097 AATCGCTTGAGGATGGCAGG 60.465 55.000 0.00 0.00 0.00 4.85
622 623 1.340399 ATCGCTTGAGGATGGCAGGA 61.340 55.000 0.00 0.00 0.00 3.86
623 624 1.078214 CGCTTGAGGATGGCAGGAA 60.078 57.895 0.00 0.00 0.00 3.36
624 625 1.094073 CGCTTGAGGATGGCAGGAAG 61.094 60.000 0.00 0.00 0.00 3.46
625 626 0.750911 GCTTGAGGATGGCAGGAAGG 60.751 60.000 0.00 0.00 0.00 3.46
626 627 0.914644 CTTGAGGATGGCAGGAAGGA 59.085 55.000 0.00 0.00 0.00 3.36
627 628 1.493871 CTTGAGGATGGCAGGAAGGAT 59.506 52.381 0.00 0.00 0.00 3.24
628 629 0.841961 TGAGGATGGCAGGAAGGATG 59.158 55.000 0.00 0.00 0.00 3.51
629 630 1.135094 GAGGATGGCAGGAAGGATGA 58.865 55.000 0.00 0.00 0.00 2.92
630 631 1.492176 GAGGATGGCAGGAAGGATGAA 59.508 52.381 0.00 0.00 0.00 2.57
631 632 1.493871 AGGATGGCAGGAAGGATGAAG 59.506 52.381 0.00 0.00 0.00 3.02
632 633 1.492176 GGATGGCAGGAAGGATGAAGA 59.508 52.381 0.00 0.00 0.00 2.87
633 634 2.092212 GGATGGCAGGAAGGATGAAGAA 60.092 50.000 0.00 0.00 0.00 2.52
634 635 3.436180 GGATGGCAGGAAGGATGAAGAAT 60.436 47.826 0.00 0.00 0.00 2.40
635 636 3.744940 TGGCAGGAAGGATGAAGAATT 57.255 42.857 0.00 0.00 0.00 2.17
636 637 3.359033 TGGCAGGAAGGATGAAGAATTG 58.641 45.455 0.00 0.00 0.00 2.32
637 638 2.692041 GGCAGGAAGGATGAAGAATTGG 59.308 50.000 0.00 0.00 0.00 3.16
638 639 2.692041 GCAGGAAGGATGAAGAATTGGG 59.308 50.000 0.00 0.00 0.00 4.12
639 640 3.294214 CAGGAAGGATGAAGAATTGGGG 58.706 50.000 0.00 0.00 0.00 4.96
640 641 3.053395 CAGGAAGGATGAAGAATTGGGGA 60.053 47.826 0.00 0.00 0.00 4.81
641 642 3.597868 AGGAAGGATGAAGAATTGGGGAA 59.402 43.478 0.00 0.00 0.00 3.97
642 643 4.045846 AGGAAGGATGAAGAATTGGGGAAA 59.954 41.667 0.00 0.00 0.00 3.13
643 644 4.777366 GGAAGGATGAAGAATTGGGGAAAA 59.223 41.667 0.00 0.00 0.00 2.29
644 645 5.248248 GGAAGGATGAAGAATTGGGGAAAAA 59.752 40.000 0.00 0.00 0.00 1.94
716 717 9.006839 TGAGTTGTACTACTATATATGAACCGG 57.993 37.037 10.02 0.00 0.00 5.28
717 718 7.824672 AGTTGTACTACTATATATGAACCGGC 58.175 38.462 8.27 0.00 0.00 6.13
758 759 5.185056 AGGGTTCCTTTGGAAATAATCGTTG 59.815 40.000 0.12 0.00 43.86 4.10
790 818 5.234543 GGTGCTACGTGATTCTAATTCCTTC 59.765 44.000 0.00 0.00 0.00 3.46
806 834 9.495572 CTAATTCCTTCACAAGAAAGAACTACT 57.504 33.333 0.00 0.00 37.11 2.57
807 835 8.753497 AATTCCTTCACAAGAAAGAACTACTT 57.247 30.769 0.00 0.00 37.11 2.24
907 935 5.105917 ACCGCTTTCAAGAAACAGAAAAGAA 60.106 36.000 0.00 0.00 33.75 2.52
908 936 5.804979 CCGCTTTCAAGAAACAGAAAAGAAA 59.195 36.000 0.00 0.00 33.75 2.52
909 937 6.310224 CCGCTTTCAAGAAACAGAAAAGAAAA 59.690 34.615 0.00 0.00 33.75 2.29
958 986 2.810870 TGGAGTCCAGGACTAGTCTC 57.189 55.000 23.01 9.60 43.53 3.36
959 987 1.065345 TGGAGTCCAGGACTAGTCTCG 60.065 57.143 23.01 12.94 43.53 4.04
960 988 1.065272 GGAGTCCAGGACTAGTCTCGT 60.065 57.143 23.01 5.09 43.53 4.18
961 989 2.282407 GAGTCCAGGACTAGTCTCGTC 58.718 57.143 23.01 3.73 43.53 4.20
962 990 1.910671 AGTCCAGGACTAGTCTCGTCT 59.089 52.381 21.66 8.10 41.51 4.18
963 991 2.011222 GTCCAGGACTAGTCTCGTCTG 58.989 57.143 21.88 18.47 0.00 3.51
964 992 1.907255 TCCAGGACTAGTCTCGTCTGA 59.093 52.381 21.88 8.09 0.00 3.27
965 993 2.011222 CCAGGACTAGTCTCGTCTGAC 58.989 57.143 21.88 3.29 37.23 3.51
966 994 2.615747 CCAGGACTAGTCTCGTCTGACA 60.616 54.545 21.88 0.00 39.27 3.58
967 995 2.675844 CAGGACTAGTCTCGTCTGACAG 59.324 54.545 21.88 0.00 39.27 3.51
968 996 2.303600 AGGACTAGTCTCGTCTGACAGT 59.696 50.000 21.88 2.32 39.27 3.55
969 997 2.674357 GGACTAGTCTCGTCTGACAGTC 59.326 54.545 21.88 11.09 40.32 3.51
970 998 2.674357 GACTAGTCTCGTCTGACAGTCC 59.326 54.545 15.91 0.00 38.12 3.85
971 999 1.661617 CTAGTCTCGTCTGACAGTCCG 59.338 57.143 8.73 6.65 39.27 4.79
972 1000 0.035036 AGTCTCGTCTGACAGTCCGA 59.965 55.000 15.57 15.57 39.27 4.55
973 1001 0.166379 GTCTCGTCTGACAGTCCGAC 59.834 60.000 13.70 13.70 36.97 4.79
974 1002 0.035036 TCTCGTCTGACAGTCCGACT 59.965 55.000 19.47 0.00 0.00 4.18
975 1003 0.444651 CTCGTCTGACAGTCCGACTC 59.555 60.000 19.47 0.00 0.00 3.36
976 1004 1.132844 CGTCTGACAGTCCGACTCG 59.867 63.158 19.47 6.99 0.00 4.18
988 1016 2.528797 CGACTCGGACTTTGGGTTG 58.471 57.895 0.00 0.00 0.00 3.77
989 1017 1.566018 CGACTCGGACTTTGGGTTGC 61.566 60.000 0.00 0.00 0.00 4.17
990 1018 0.534203 GACTCGGACTTTGGGTTGCA 60.534 55.000 0.00 0.00 0.00 4.08
1190 2103 0.254178 AAGCCGCTCAATCCATCAGT 59.746 50.000 0.00 0.00 0.00 3.41
1221 2137 2.058675 CTTCGTGTTCCTCCCCAGT 58.941 57.895 0.00 0.00 0.00 4.00
1311 2227 0.454620 GGATCGTCGCGCCTATACAG 60.455 60.000 0.00 0.00 0.00 2.74
1458 2380 2.969238 CGGGCTATGCGGCTTGAG 60.969 66.667 0.00 0.00 38.46 3.02
1494 2416 1.734137 GATCCTCGCGCTCCTACAA 59.266 57.895 5.56 0.00 0.00 2.41
1862 2797 1.073897 GGGACACCTTCAGCAAGCT 59.926 57.895 0.00 0.00 0.00 3.74
1935 2871 1.574702 CGAAGCAAACCGACCCTTCC 61.575 60.000 0.00 0.00 32.18 3.46
2119 3061 2.259818 CGCTCTTCACGCCAGAGT 59.740 61.111 7.67 0.00 40.13 3.24
2349 3364 8.263640 AGCTATAAGTTTCATCAGAGACATTGT 58.736 33.333 0.00 0.00 31.59 2.71
2409 3425 2.240493 ATATTTTCAGGCGAGTCCCG 57.760 50.000 0.00 0.00 42.21 5.14
2425 3441 5.187621 AGTCCCGAGGAATTAATTGGAAA 57.812 39.130 5.17 0.00 31.38 3.13
2461 3477 5.490139 AATTTGCAGGAGACATAATCACG 57.510 39.130 0.00 0.00 0.00 4.35
2462 3478 2.602257 TGCAGGAGACATAATCACGG 57.398 50.000 0.00 0.00 0.00 4.94
2495 3511 6.195983 GTGTATCGTAGTGTATTGTAGTGTGC 59.804 42.308 0.00 0.00 0.00 4.57
2578 3595 6.142798 GCATGCATGGAAAAATGTAACGATAG 59.857 38.462 27.34 0.00 46.19 2.08
2582 3599 7.753132 TGCATGGAAAAATGTAACGATAGAAAC 59.247 33.333 0.00 0.00 41.38 2.78
2667 3685 2.599659 CGGTCGTTTACTAACAGTCCC 58.400 52.381 0.00 0.00 33.75 4.46
2674 3692 6.426025 GTCGTTTACTAACAGTCCCAGATTTT 59.574 38.462 0.00 0.00 33.75 1.82
2690 3708 3.686726 AGATTTTGGAACAGATCTGCGAC 59.313 43.478 22.83 12.71 40.07 5.19
2709 3727 0.388778 CAAAATGCAGTGATGGCGCA 60.389 50.000 10.83 0.00 40.50 6.09
2779 3797 6.552859 TGTCGACAAATCATAAAGAAGCAA 57.447 33.333 17.62 0.00 0.00 3.91
2807 3825 7.707104 ACAATTTTAAGCCATCTTAATCTCCG 58.293 34.615 0.00 0.00 42.47 4.63
2814 3832 4.096984 AGCCATCTTAATCTCCGCAAAAAG 59.903 41.667 0.00 0.00 0.00 2.27
2815 3833 4.354587 CCATCTTAATCTCCGCAAAAAGC 58.645 43.478 0.00 0.00 40.87 3.51
2816 3834 4.142403 CCATCTTAATCTCCGCAAAAAGCA 60.142 41.667 0.00 0.00 46.13 3.91
2817 3835 4.419522 TCTTAATCTCCGCAAAAAGCAC 57.580 40.909 0.00 0.00 46.13 4.40
2818 3836 3.818210 TCTTAATCTCCGCAAAAAGCACA 59.182 39.130 0.00 0.00 46.13 4.57
2821 3839 2.202295 TCTCCGCAAAAAGCACAAAC 57.798 45.000 0.00 0.00 46.13 2.93
2822 3840 0.845768 CTCCGCAAAAAGCACAAACG 59.154 50.000 0.00 0.00 46.13 3.60
2823 3841 1.142778 TCCGCAAAAAGCACAAACGC 61.143 50.000 0.00 0.00 46.13 4.84
2825 3843 1.738144 CGCAAAAAGCACAAACGCGT 61.738 50.000 5.58 5.58 46.13 6.01
2828 3846 0.171455 AAAAAGCACAAACGCGTCCA 59.829 45.000 14.44 0.00 36.85 4.02
2835 3864 0.597637 ACAAACGCGTCCAGAGTGAG 60.598 55.000 14.44 0.00 31.75 3.51
2841 3870 1.268285 CGCGTCCAGAGTGAGTATGAG 60.268 57.143 0.00 0.00 0.00 2.90
2847 3876 3.092301 CCAGAGTGAGTATGAGGTGTGA 58.908 50.000 0.00 0.00 0.00 3.58
2854 3883 6.773638 AGTGAGTATGAGGTGTGATTCTTTT 58.226 36.000 0.00 0.00 0.00 2.27
2855 3884 6.876257 AGTGAGTATGAGGTGTGATTCTTTTC 59.124 38.462 0.00 0.00 0.00 2.29
2856 3885 6.876257 GTGAGTATGAGGTGTGATTCTTTTCT 59.124 38.462 0.00 0.00 0.00 2.52
2857 3886 7.389053 GTGAGTATGAGGTGTGATTCTTTTCTT 59.611 37.037 0.00 0.00 0.00 2.52
2858 3887 7.939039 TGAGTATGAGGTGTGATTCTTTTCTTT 59.061 33.333 0.00 0.00 0.00 2.52
2859 3888 8.697507 AGTATGAGGTGTGATTCTTTTCTTTT 57.302 30.769 0.00 0.00 0.00 2.27
2884 3913 6.673154 TTTCATCTTGCATATCAGTCACTG 57.327 37.500 0.00 0.00 0.00 3.66
2896 3925 4.090761 TCAGTCACTGGAGCTCATTTTT 57.909 40.909 17.19 0.00 31.51 1.94
2911 3940 7.432869 AGCTCATTTTTACTTTGCAATGTGTA 58.567 30.769 24.00 13.79 0.00 2.90
2980 4009 7.966812 ACCATACTGAGCTGTTTATGATGATA 58.033 34.615 0.00 0.00 0.00 2.15
3090 4126 9.546428 TCATACCTCAACTGAACATTGTATATG 57.454 33.333 0.00 0.00 0.00 1.78
3148 4184 7.642194 TCACTTTATCACTTTTGCTTGTAAACG 59.358 33.333 0.00 0.00 0.00 3.60
3151 4187 3.947626 TCACTTTTGCTTGTAAACGCTC 58.052 40.909 0.00 0.00 0.00 5.03
3152 4188 3.625764 TCACTTTTGCTTGTAAACGCTCT 59.374 39.130 0.00 0.00 0.00 4.09
3155 4191 5.621228 CACTTTTGCTTGTAAACGCTCTTAG 59.379 40.000 0.00 0.00 0.00 2.18
3157 4193 6.204882 ACTTTTGCTTGTAAACGCTCTTAGAT 59.795 34.615 0.00 0.00 0.00 1.98
3158 4194 6.554334 TTTGCTTGTAAACGCTCTTAGATT 57.446 33.333 0.00 0.00 0.00 2.40
3159 4195 7.661127 TTTGCTTGTAAACGCTCTTAGATTA 57.339 32.000 0.00 0.00 0.00 1.75
3161 4197 6.395629 TGCTTGTAAACGCTCTTAGATTAGT 58.604 36.000 0.00 0.00 0.00 2.24
3163 4199 7.386848 TGCTTGTAAACGCTCTTAGATTAGTTT 59.613 33.333 12.00 12.00 36.11 2.66
3168 4204 9.565213 GTAAACGCTCTTAGATTAGTTTACAGA 57.435 33.333 24.78 7.46 46.09 3.41
3169 4205 8.690680 AAACGCTCTTAGATTAGTTTACAGAG 57.309 34.615 7.64 0.00 31.14 3.35
3170 4206 6.797454 ACGCTCTTAGATTAGTTTACAGAGG 58.203 40.000 0.00 0.00 0.00 3.69
3172 4208 6.039493 CGCTCTTAGATTAGTTTACAGAGGGA 59.961 42.308 4.76 0.00 40.49 4.20
3195 4237 2.641305 AGCTTGGAACATGAGAGATGC 58.359 47.619 0.00 0.00 39.30 3.91
3240 4283 6.331369 ACCAATCCAACAAATTAGTCAGTG 57.669 37.500 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.307242 GGATGAGCGTAACAACTAGCTTG 59.693 47.826 0.00 0.00 40.39 4.01
7 8 3.522553 GGATGAGCGTAACAACTAGCTT 58.477 45.455 0.00 0.00 40.39 3.74
8 9 2.159085 GGGATGAGCGTAACAACTAGCT 60.159 50.000 0.00 0.00 43.33 3.32
9 10 2.159085 AGGGATGAGCGTAACAACTAGC 60.159 50.000 0.00 0.00 0.00 3.42
10 11 3.381908 AGAGGGATGAGCGTAACAACTAG 59.618 47.826 0.00 0.00 0.00 2.57
11 12 3.130516 CAGAGGGATGAGCGTAACAACTA 59.869 47.826 0.00 0.00 0.00 2.24
12 13 2.093973 CAGAGGGATGAGCGTAACAACT 60.094 50.000 0.00 0.00 0.00 3.16
13 14 2.271800 CAGAGGGATGAGCGTAACAAC 58.728 52.381 0.00 0.00 0.00 3.32
14 15 1.405526 GCAGAGGGATGAGCGTAACAA 60.406 52.381 0.00 0.00 0.00 2.83
15 16 0.175760 GCAGAGGGATGAGCGTAACA 59.824 55.000 0.00 0.00 0.00 2.41
16 17 0.175760 TGCAGAGGGATGAGCGTAAC 59.824 55.000 0.00 0.00 0.00 2.50
17 18 0.901827 TTGCAGAGGGATGAGCGTAA 59.098 50.000 0.00 0.00 0.00 3.18
18 19 0.175760 GTTGCAGAGGGATGAGCGTA 59.824 55.000 0.00 0.00 0.00 4.42
19 20 1.078848 GTTGCAGAGGGATGAGCGT 60.079 57.895 0.00 0.00 0.00 5.07
20 21 0.674581 TTGTTGCAGAGGGATGAGCG 60.675 55.000 0.00 0.00 0.00 5.03
21 22 0.807496 GTTGTTGCAGAGGGATGAGC 59.193 55.000 0.00 0.00 0.00 4.26
22 23 1.081892 CGTTGTTGCAGAGGGATGAG 58.918 55.000 0.00 0.00 0.00 2.90
23 24 0.684535 TCGTTGTTGCAGAGGGATGA 59.315 50.000 0.00 0.00 0.00 2.92
24 25 0.798776 GTCGTTGTTGCAGAGGGATG 59.201 55.000 0.00 0.00 0.00 3.51
25 26 0.687354 AGTCGTTGTTGCAGAGGGAT 59.313 50.000 0.00 0.00 0.00 3.85
26 27 0.468226 AAGTCGTTGTTGCAGAGGGA 59.532 50.000 0.00 0.00 0.00 4.20
27 28 1.308998 AAAGTCGTTGTTGCAGAGGG 58.691 50.000 0.00 0.00 0.00 4.30
28 29 4.466828 CAATAAAGTCGTTGTTGCAGAGG 58.533 43.478 0.00 0.00 32.43 3.69
34 35 4.085822 CGGTTTGCAATAAAGTCGTTGTTG 60.086 41.667 0.00 4.09 40.34 3.33
35 36 4.039032 CGGTTTGCAATAAAGTCGTTGTT 58.961 39.130 0.00 0.00 0.00 2.83
36 37 3.623863 CGGTTTGCAATAAAGTCGTTGT 58.376 40.909 0.00 0.00 0.00 3.32
37 38 2.403698 GCGGTTTGCAATAAAGTCGTTG 59.596 45.455 0.00 0.00 45.45 4.10
38 39 2.657184 GCGGTTTGCAATAAAGTCGTT 58.343 42.857 0.00 0.00 45.45 3.85
39 40 2.325509 GCGGTTTGCAATAAAGTCGT 57.674 45.000 0.00 0.00 45.45 4.34
57 58 1.321743 CACACGATAACGCTTCAGAGC 59.678 52.381 0.00 0.00 45.65 4.09
58 59 2.594654 GTCACACGATAACGCTTCAGAG 59.405 50.000 0.00 0.00 43.96 3.35
59 60 2.228103 AGTCACACGATAACGCTTCAGA 59.772 45.455 0.00 0.00 43.96 3.27
60 61 2.596452 AGTCACACGATAACGCTTCAG 58.404 47.619 0.00 0.00 43.96 3.02
61 62 2.717580 AGTCACACGATAACGCTTCA 57.282 45.000 0.00 0.00 43.96 3.02
62 63 2.984471 TGAAGTCACACGATAACGCTTC 59.016 45.455 0.00 0.00 43.96 3.86
63 64 2.729882 GTGAAGTCACACGATAACGCTT 59.270 45.455 6.57 0.00 45.75 4.68
64 65 2.325761 GTGAAGTCACACGATAACGCT 58.674 47.619 6.57 0.00 45.75 5.07
65 66 2.763930 GTGAAGTCACACGATAACGC 57.236 50.000 6.57 0.00 45.75 4.84
73 74 3.035942 GTTGCAATTCGTGAAGTCACAC 58.964 45.455 0.59 0.00 46.75 3.82
74 75 2.680339 TGTTGCAATTCGTGAAGTCACA 59.320 40.909 0.59 0.00 46.75 3.58
75 76 3.332761 TGTTGCAATTCGTGAAGTCAC 57.667 42.857 0.59 1.12 43.15 3.67
76 77 3.376859 ACTTGTTGCAATTCGTGAAGTCA 59.623 39.130 0.59 0.00 0.00 3.41
77 78 3.952535 ACTTGTTGCAATTCGTGAAGTC 58.047 40.909 0.59 0.00 0.00 3.01
78 79 4.104776 CAACTTGTTGCAATTCGTGAAGT 58.895 39.130 0.59 2.12 0.00 3.01
79 80 3.486841 CCAACTTGTTGCAATTCGTGAAG 59.513 43.478 0.59 1.51 0.00 3.02
80 81 3.119316 ACCAACTTGTTGCAATTCGTGAA 60.119 39.130 0.59 0.00 0.00 3.18
81 82 2.425312 ACCAACTTGTTGCAATTCGTGA 59.575 40.909 0.59 0.00 0.00 4.35
82 83 2.808244 ACCAACTTGTTGCAATTCGTG 58.192 42.857 0.59 0.00 0.00 4.35
83 84 3.186119 CAACCAACTTGTTGCAATTCGT 58.814 40.909 0.59 0.00 39.19 3.85
84 85 3.839823 CAACCAACTTGTTGCAATTCG 57.160 42.857 0.59 0.00 39.19 3.34
93 94 1.178276 TTCGGCAACAACCAACTTGT 58.822 45.000 0.00 0.00 45.68 3.16
94 95 1.923864 GTTTCGGCAACAACCAACTTG 59.076 47.619 0.00 0.00 35.18 3.16
95 96 1.546476 TGTTTCGGCAACAACCAACTT 59.454 42.857 0.00 0.00 42.76 2.66
96 97 1.134175 CTGTTTCGGCAACAACCAACT 59.866 47.619 0.00 0.00 45.11 3.16
97 98 1.133407 TCTGTTTCGGCAACAACCAAC 59.867 47.619 0.00 0.00 45.11 3.77
98 99 1.403679 CTCTGTTTCGGCAACAACCAA 59.596 47.619 0.00 0.00 45.11 3.67
99 100 1.021202 CTCTGTTTCGGCAACAACCA 58.979 50.000 0.00 0.00 45.11 3.67
100 101 1.002792 GTCTCTGTTTCGGCAACAACC 60.003 52.381 0.00 0.00 45.11 3.77
101 102 1.940613 AGTCTCTGTTTCGGCAACAAC 59.059 47.619 0.00 0.00 45.11 3.32
102 103 2.325583 AGTCTCTGTTTCGGCAACAA 57.674 45.000 0.00 0.00 45.11 2.83
103 104 2.325583 AAGTCTCTGTTTCGGCAACA 57.674 45.000 0.00 0.00 43.55 3.33
104 105 2.354821 ACAAAGTCTCTGTTTCGGCAAC 59.645 45.455 0.00 0.00 35.71 4.17
105 106 2.354510 CACAAAGTCTCTGTTTCGGCAA 59.645 45.455 0.00 0.00 0.00 4.52
106 107 1.939934 CACAAAGTCTCTGTTTCGGCA 59.060 47.619 0.00 0.00 0.00 5.69
107 108 1.334149 GCACAAAGTCTCTGTTTCGGC 60.334 52.381 0.00 0.00 0.00 5.54
108 109 1.070577 CGCACAAAGTCTCTGTTTCGG 60.071 52.381 0.00 0.00 0.00 4.30
109 110 1.070577 CCGCACAAAGTCTCTGTTTCG 60.071 52.381 0.00 0.00 0.00 3.46
110 111 2.210116 TCCGCACAAAGTCTCTGTTTC 58.790 47.619 0.00 0.00 0.00 2.78
111 112 2.158957 TCTCCGCACAAAGTCTCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
112 113 1.412710 TCTCCGCACAAAGTCTCTGTT 59.587 47.619 0.00 0.00 0.00 3.16
113 114 1.040646 TCTCCGCACAAAGTCTCTGT 58.959 50.000 0.00 0.00 0.00 3.41
114 115 1.423395 GTCTCCGCACAAAGTCTCTG 58.577 55.000 0.00 0.00 0.00 3.35
115 116 0.039074 CGTCTCCGCACAAAGTCTCT 60.039 55.000 0.00 0.00 0.00 3.10
116 117 0.318784 ACGTCTCCGCACAAAGTCTC 60.319 55.000 0.00 0.00 37.70 3.36
117 118 0.597637 CACGTCTCCGCACAAAGTCT 60.598 55.000 0.00 0.00 37.70 3.24
118 119 0.596600 TCACGTCTCCGCACAAAGTC 60.597 55.000 0.00 0.00 37.70 3.01
119 120 0.033504 ATCACGTCTCCGCACAAAGT 59.966 50.000 0.00 0.00 37.70 2.66
120 121 0.439985 CATCACGTCTCCGCACAAAG 59.560 55.000 0.00 0.00 37.70 2.77
121 122 0.249699 ACATCACGTCTCCGCACAAA 60.250 50.000 0.00 0.00 37.70 2.83
122 123 0.599060 TACATCACGTCTCCGCACAA 59.401 50.000 0.00 0.00 37.70 3.33
123 124 0.599060 TTACATCACGTCTCCGCACA 59.401 50.000 0.00 0.00 37.70 4.57
124 125 0.989890 GTTACATCACGTCTCCGCAC 59.010 55.000 0.00 0.00 37.70 5.34
125 126 0.885879 AGTTACATCACGTCTCCGCA 59.114 50.000 0.00 0.00 37.70 5.69
126 127 1.992170 AAGTTACATCACGTCTCCGC 58.008 50.000 0.00 0.00 37.70 5.54
127 128 3.423123 GCAAAAGTTACATCACGTCTCCG 60.423 47.826 0.00 0.00 40.83 4.63
128 129 3.496884 TGCAAAAGTTACATCACGTCTCC 59.503 43.478 0.00 0.00 0.00 3.71
129 130 4.725556 TGCAAAAGTTACATCACGTCTC 57.274 40.909 0.00 0.00 0.00 3.36
130 131 4.574828 AGTTGCAAAAGTTACATCACGTCT 59.425 37.500 0.00 0.00 0.00 4.18
131 132 4.670621 CAGTTGCAAAAGTTACATCACGTC 59.329 41.667 0.00 0.00 0.00 4.34
132 133 4.597079 CAGTTGCAAAAGTTACATCACGT 58.403 39.130 0.00 0.00 0.00 4.49
133 134 3.421888 GCAGTTGCAAAAGTTACATCACG 59.578 43.478 0.00 0.00 41.59 4.35
134 135 3.421888 CGCAGTTGCAAAAGTTACATCAC 59.578 43.478 0.00 0.00 42.21 3.06
135 136 3.549827 CCGCAGTTGCAAAAGTTACATCA 60.550 43.478 0.00 0.00 42.21 3.07
136 137 2.979813 CCGCAGTTGCAAAAGTTACATC 59.020 45.455 0.00 0.00 42.21 3.06
137 138 2.360801 ACCGCAGTTGCAAAAGTTACAT 59.639 40.909 0.00 0.00 42.21 2.29
138 139 1.746220 ACCGCAGTTGCAAAAGTTACA 59.254 42.857 0.00 0.00 42.21 2.41
139 140 2.116366 CACCGCAGTTGCAAAAGTTAC 58.884 47.619 0.00 0.00 42.21 2.50
140 141 2.017782 TCACCGCAGTTGCAAAAGTTA 58.982 42.857 0.00 0.00 42.21 2.24
141 142 0.814457 TCACCGCAGTTGCAAAAGTT 59.186 45.000 0.00 0.00 42.21 2.66
142 143 1.032014 ATCACCGCAGTTGCAAAAGT 58.968 45.000 0.00 0.00 42.21 2.66
143 144 1.269206 ACATCACCGCAGTTGCAAAAG 60.269 47.619 0.00 0.00 42.21 2.27
144 145 0.743688 ACATCACCGCAGTTGCAAAA 59.256 45.000 0.00 0.00 42.21 2.44
145 146 0.310543 GACATCACCGCAGTTGCAAA 59.689 50.000 0.00 0.00 42.21 3.68
146 147 1.840630 CGACATCACCGCAGTTGCAA 61.841 55.000 0.00 0.00 42.21 4.08
147 148 2.316867 CGACATCACCGCAGTTGCA 61.317 57.895 4.84 0.00 42.21 4.08
148 149 2.476051 CGACATCACCGCAGTTGC 59.524 61.111 0.00 0.00 37.78 4.17
174 175 6.403866 TTGTTGCATAAAAGTGGAGACAAT 57.596 33.333 0.00 0.00 46.06 2.71
175 176 5.843673 TTGTTGCATAAAAGTGGAGACAA 57.156 34.783 0.00 0.00 46.06 3.18
176 177 5.221224 CCTTTGTTGCATAAAAGTGGAGACA 60.221 40.000 16.26 0.00 32.57 3.41
177 178 5.221244 ACCTTTGTTGCATAAAAGTGGAGAC 60.221 40.000 16.26 0.00 32.57 3.36
178 179 4.892934 ACCTTTGTTGCATAAAAGTGGAGA 59.107 37.500 16.26 0.00 32.57 3.71
179 180 5.200368 ACCTTTGTTGCATAAAAGTGGAG 57.800 39.130 16.26 7.19 32.57 3.86
180 181 6.716934 TTACCTTTGTTGCATAAAAGTGGA 57.283 33.333 16.26 6.13 32.57 4.02
181 182 6.928492 ACATTACCTTTGTTGCATAAAAGTGG 59.072 34.615 16.26 8.68 32.57 4.00
182 183 7.945033 ACATTACCTTTGTTGCATAAAAGTG 57.055 32.000 16.26 11.77 32.57 3.16
183 184 8.364129 CAACATTACCTTTGTTGCATAAAAGT 57.636 30.769 16.26 10.48 45.10 2.66
193 194 5.852282 ACTTCTGCAACATTACCTTTGTT 57.148 34.783 0.00 0.00 37.79 2.83
194 195 5.852282 AACTTCTGCAACATTACCTTTGT 57.148 34.783 0.00 0.00 0.00 2.83
195 196 7.538303 AAAAACTTCTGCAACATTACCTTTG 57.462 32.000 0.00 0.00 0.00 2.77
217 218 4.069300 TGCATGAATGTGAAGGCAAAAA 57.931 36.364 0.00 0.00 0.00 1.94
218 219 3.747854 TGCATGAATGTGAAGGCAAAA 57.252 38.095 0.00 0.00 0.00 2.44
219 220 3.747854 TTGCATGAATGTGAAGGCAAA 57.252 38.095 0.00 0.00 38.20 3.68
220 221 3.591023 CATTGCATGAATGTGAAGGCAA 58.409 40.909 0.00 0.00 44.21 4.52
221 222 3.239587 CATTGCATGAATGTGAAGGCA 57.760 42.857 0.00 0.00 37.29 4.75
229 230 5.509716 ACATCACCTACATTGCATGAATG 57.490 39.130 13.16 13.16 46.20 2.67
230 231 5.680408 GCAACATCACCTACATTGCATGAAT 60.680 40.000 0.00 0.00 44.01 2.57
231 232 4.380761 GCAACATCACCTACATTGCATGAA 60.381 41.667 0.00 0.00 44.01 2.57
232 233 3.129113 GCAACATCACCTACATTGCATGA 59.871 43.478 0.00 0.00 44.01 3.07
233 234 3.441163 GCAACATCACCTACATTGCATG 58.559 45.455 2.54 0.00 44.01 4.06
234 235 2.097954 CGCAACATCACCTACATTGCAT 59.902 45.455 7.89 0.00 44.65 3.96
235 236 1.468127 CGCAACATCACCTACATTGCA 59.532 47.619 7.89 0.00 44.65 4.08
236 237 1.202177 CCGCAACATCACCTACATTGC 60.202 52.381 0.00 0.00 41.74 3.56
237 238 1.401552 CCCGCAACATCACCTACATTG 59.598 52.381 0.00 0.00 0.00 2.82
238 239 1.280710 TCCCGCAACATCACCTACATT 59.719 47.619 0.00 0.00 0.00 2.71
239 240 0.908910 TCCCGCAACATCACCTACAT 59.091 50.000 0.00 0.00 0.00 2.29
240 241 0.249120 CTCCCGCAACATCACCTACA 59.751 55.000 0.00 0.00 0.00 2.74
241 242 1.090052 GCTCCCGCAACATCACCTAC 61.090 60.000 0.00 0.00 35.78 3.18
242 243 1.220749 GCTCCCGCAACATCACCTA 59.779 57.895 0.00 0.00 35.78 3.08
243 244 2.045926 GCTCCCGCAACATCACCT 60.046 61.111 0.00 0.00 35.78 4.00
244 245 2.359850 TGCTCCCGCAACATCACC 60.360 61.111 0.00 0.00 44.62 4.02
259 260 5.463061 ACATCAGTAATGTTGCAAAACTTGC 59.537 36.000 0.00 4.41 46.73 4.01
272 273 8.533965 CAAATAAATTCCGCAACATCAGTAATG 58.466 33.333 0.00 0.00 41.48 1.90
273 274 7.222611 GCAAATAAATTCCGCAACATCAGTAAT 59.777 33.333 0.00 0.00 0.00 1.89
274 275 6.529829 GCAAATAAATTCCGCAACATCAGTAA 59.470 34.615 0.00 0.00 0.00 2.24
275 276 6.033341 GCAAATAAATTCCGCAACATCAGTA 58.967 36.000 0.00 0.00 0.00 2.74
276 277 4.864247 GCAAATAAATTCCGCAACATCAGT 59.136 37.500 0.00 0.00 0.00 3.41
277 278 4.863689 TGCAAATAAATTCCGCAACATCAG 59.136 37.500 0.00 0.00 0.00 2.90
278 279 4.814147 TGCAAATAAATTCCGCAACATCA 58.186 34.783 0.00 0.00 0.00 3.07
279 280 5.776519 TTGCAAATAAATTCCGCAACATC 57.223 34.783 0.00 0.00 34.91 3.06
280 281 5.873712 TCATTGCAAATAAATTCCGCAACAT 59.126 32.000 1.71 0.05 39.38 2.71
281 282 5.233225 TCATTGCAAATAAATTCCGCAACA 58.767 33.333 1.71 3.47 39.38 3.33
282 283 5.776519 TCATTGCAAATAAATTCCGCAAC 57.223 34.783 1.71 0.00 39.38 4.17
283 284 6.981762 ATTCATTGCAAATAAATTCCGCAA 57.018 29.167 1.71 12.26 40.22 4.85
284 285 6.700960 CCTATTCATTGCAAATAAATTCCGCA 59.299 34.615 1.71 0.00 0.00 5.69
285 286 6.146021 CCCTATTCATTGCAAATAAATTCCGC 59.854 38.462 1.71 0.00 0.00 5.54
286 287 7.209475 ACCCTATTCATTGCAAATAAATTCCG 58.791 34.615 1.71 0.00 0.00 4.30
287 288 8.829612 CAACCCTATTCATTGCAAATAAATTCC 58.170 33.333 1.71 0.00 0.00 3.01
288 289 8.829612 CCAACCCTATTCATTGCAAATAAATTC 58.170 33.333 1.71 0.00 0.00 2.17
289 290 7.282901 GCCAACCCTATTCATTGCAAATAAATT 59.717 33.333 1.71 0.00 0.00 1.82
290 291 6.767423 GCCAACCCTATTCATTGCAAATAAAT 59.233 34.615 1.71 6.40 0.00 1.40
291 292 6.112058 GCCAACCCTATTCATTGCAAATAAA 58.888 36.000 1.71 0.00 0.00 1.40
292 293 5.396213 GGCCAACCCTATTCATTGCAAATAA 60.396 40.000 1.71 0.63 0.00 1.40
293 294 4.100808 GGCCAACCCTATTCATTGCAAATA 59.899 41.667 1.71 0.00 0.00 1.40
294 295 3.118298 GGCCAACCCTATTCATTGCAAAT 60.118 43.478 1.71 0.00 0.00 2.32
295 296 2.235898 GGCCAACCCTATTCATTGCAAA 59.764 45.455 1.71 0.00 0.00 3.68
296 297 1.830477 GGCCAACCCTATTCATTGCAA 59.170 47.619 0.00 0.00 0.00 4.08
297 298 1.484038 GGCCAACCCTATTCATTGCA 58.516 50.000 0.00 0.00 0.00 4.08
309 310 1.632965 CCCTACTACCTGGGCCAACC 61.633 65.000 8.04 0.00 36.61 3.77
310 311 1.912971 CCCTACTACCTGGGCCAAC 59.087 63.158 8.04 0.00 36.61 3.77
311 312 4.492232 CCCTACTACCTGGGCCAA 57.508 61.111 8.04 0.00 36.61 4.52
315 316 1.766461 CTGGGCCCTACTACCTGGG 60.766 68.421 25.70 0.00 46.00 4.45
316 317 1.766461 CCTGGGCCCTACTACCTGG 60.766 68.421 25.70 8.17 37.10 4.45
317 318 2.444256 GCCTGGGCCCTACTACCTG 61.444 68.421 25.70 3.25 34.56 4.00
318 319 2.040779 GCCTGGGCCCTACTACCT 60.041 66.667 25.70 0.00 34.56 3.08
319 320 2.366435 TGCCTGGGCCCTACTACC 60.366 66.667 25.70 5.92 41.09 3.18
320 321 2.908796 GTGCCTGGGCCCTACTAC 59.091 66.667 25.70 13.45 41.09 2.73
321 322 2.762459 CGTGCCTGGGCCCTACTA 60.762 66.667 25.70 0.01 41.09 1.82
323 324 4.778143 CACGTGCCTGGGCCCTAC 62.778 72.222 25.70 15.39 41.09 3.18
330 331 3.663176 CTTGGTGCACGTGCCTGG 61.663 66.667 35.72 17.85 41.18 4.45
331 332 2.901840 ACTTGGTGCACGTGCCTG 60.902 61.111 35.72 22.11 41.18 4.85
332 333 2.901840 CACTTGGTGCACGTGCCT 60.902 61.111 35.72 9.97 41.18 4.75
333 334 2.662091 GAACACTTGGTGCACGTGCC 62.662 60.000 35.72 25.83 37.16 5.01
334 335 1.298339 GAACACTTGGTGCACGTGC 60.298 57.895 33.11 33.11 37.16 5.34
335 336 0.662619 ATGAACACTTGGTGCACGTG 59.337 50.000 18.25 18.25 38.07 4.49
336 337 0.662619 CATGAACACTTGGTGCACGT 59.337 50.000 11.45 0.00 38.07 4.49
337 338 0.661187 GCATGAACACTTGGTGCACG 60.661 55.000 11.45 0.00 38.07 5.34
338 339 0.661187 CGCATGAACACTTGGTGCAC 60.661 55.000 8.80 8.80 38.07 4.57
339 340 0.817229 TCGCATGAACACTTGGTGCA 60.817 50.000 0.00 0.00 40.11 4.57
340 341 0.110056 CTCGCATGAACACTTGGTGC 60.110 55.000 0.00 0.00 36.98 5.01
341 342 1.195448 GACTCGCATGAACACTTGGTG 59.805 52.381 0.00 0.00 39.75 4.17
342 343 1.512926 GACTCGCATGAACACTTGGT 58.487 50.000 0.00 0.00 0.00 3.67
343 344 0.439985 CGACTCGCATGAACACTTGG 59.560 55.000 0.00 0.00 0.00 3.61
344 345 3.935133 CGACTCGCATGAACACTTG 57.065 52.632 0.00 0.00 0.00 3.16
364 365 4.148825 ACTGGATCGTGAGGCCGC 62.149 66.667 0.00 0.00 0.00 6.53
365 366 2.202797 CACTGGATCGTGAGGCCG 60.203 66.667 0.00 0.00 37.06 6.13
366 367 2.187946 CCACTGGATCGTGAGGCC 59.812 66.667 0.00 0.00 37.06 5.19
367 368 1.153549 GTCCACTGGATCGTGAGGC 60.154 63.158 0.00 0.00 37.06 4.70
368 369 1.257750 TGGTCCACTGGATCGTGAGG 61.258 60.000 0.00 0.00 35.15 3.86
369 370 0.608130 TTGGTCCACTGGATCGTGAG 59.392 55.000 0.00 0.00 35.15 3.51
370 371 1.066215 CATTGGTCCACTGGATCGTGA 60.066 52.381 0.00 0.00 35.15 4.35
371 372 1.372582 CATTGGTCCACTGGATCGTG 58.627 55.000 0.00 0.20 35.15 4.35
372 373 0.392998 GCATTGGTCCACTGGATCGT 60.393 55.000 10.95 0.00 35.15 3.73
373 374 1.431488 CGCATTGGTCCACTGGATCG 61.431 60.000 10.95 2.89 35.15 3.69
374 375 0.392998 ACGCATTGGTCCACTGGATC 60.393 55.000 10.95 0.24 32.73 3.36
375 376 0.392998 GACGCATTGGTCCACTGGAT 60.393 55.000 10.95 0.00 32.73 3.41
376 377 1.003839 GACGCATTGGTCCACTGGA 60.004 57.895 10.95 0.00 0.00 3.86
377 378 2.390599 CGACGCATTGGTCCACTGG 61.391 63.158 10.95 4.23 33.30 4.00
378 379 3.027170 GCGACGCATTGGTCCACTG 62.027 63.158 16.42 4.85 33.30 3.66
379 380 2.742372 GCGACGCATTGGTCCACT 60.742 61.111 16.42 0.00 33.30 4.00
380 381 4.147322 CGCGACGCATTGGTCCAC 62.147 66.667 21.35 0.00 33.30 4.02
381 382 3.657448 ATCGCGACGCATTGGTCCA 62.657 57.895 21.35 0.00 33.30 4.02
382 383 2.871427 GATCGCGACGCATTGGTCC 61.871 63.158 21.35 0.00 33.30 4.46
383 384 1.878522 AGATCGCGACGCATTGGTC 60.879 57.895 21.35 9.48 0.00 4.02
384 385 2.167219 CAGATCGCGACGCATTGGT 61.167 57.895 21.35 0.00 0.00 3.67
385 386 1.217585 ATCAGATCGCGACGCATTGG 61.218 55.000 21.35 3.12 0.00 3.16
386 387 0.111398 CATCAGATCGCGACGCATTG 60.111 55.000 21.35 11.54 0.00 2.82
387 388 1.217585 CCATCAGATCGCGACGCATT 61.218 55.000 21.35 5.87 0.00 3.56
388 389 1.662760 CCATCAGATCGCGACGCAT 60.663 57.895 21.35 12.26 0.00 4.73
389 390 2.278792 CCATCAGATCGCGACGCA 60.279 61.111 21.35 7.55 0.00 5.24
390 391 3.696426 GCCATCAGATCGCGACGC 61.696 66.667 12.93 10.49 0.00 5.19
391 392 3.032609 GGCCATCAGATCGCGACG 61.033 66.667 12.93 2.72 0.00 5.12
392 393 3.032609 CGGCCATCAGATCGCGAC 61.033 66.667 12.93 5.67 0.00 5.19
393 394 4.950062 GCGGCCATCAGATCGCGA 62.950 66.667 13.09 13.09 38.82 5.87
397 398 4.950062 TCGCGCGGCCATCAGATC 62.950 66.667 31.69 0.00 0.00 2.75
398 399 4.957684 CTCGCGCGGCCATCAGAT 62.958 66.667 31.69 0.00 0.00 2.90
408 409 4.246206 TACATCCGTCCTCGCGCG 62.246 66.667 26.76 26.76 35.54 6.86
409 410 2.353607 CTACATCCGTCCTCGCGC 60.354 66.667 0.00 0.00 35.54 6.86
410 411 2.353607 GCTACATCCGTCCTCGCG 60.354 66.667 0.00 0.00 35.54 5.87
411 412 2.353607 CGCTACATCCGTCCTCGC 60.354 66.667 0.00 0.00 35.54 5.03
412 413 1.158484 TCTCGCTACATCCGTCCTCG 61.158 60.000 0.00 0.00 0.00 4.63
413 414 1.022735 TTCTCGCTACATCCGTCCTC 58.977 55.000 0.00 0.00 0.00 3.71
414 415 1.405821 CTTTCTCGCTACATCCGTCCT 59.594 52.381 0.00 0.00 0.00 3.85
415 416 1.404391 TCTTTCTCGCTACATCCGTCC 59.596 52.381 0.00 0.00 0.00 4.79
416 417 2.846039 TCTTTCTCGCTACATCCGTC 57.154 50.000 0.00 0.00 0.00 4.79
417 418 2.287069 CGATCTTTCTCGCTACATCCGT 60.287 50.000 0.00 0.00 0.00 4.69
418 419 2.311462 CGATCTTTCTCGCTACATCCG 58.689 52.381 0.00 0.00 0.00 4.18
419 420 2.667137 CCGATCTTTCTCGCTACATCC 58.333 52.381 0.00 0.00 37.33 3.51
420 421 2.055100 GCCGATCTTTCTCGCTACATC 58.945 52.381 0.00 0.00 37.33 3.06
421 422 1.269831 GGCCGATCTTTCTCGCTACAT 60.270 52.381 0.00 0.00 37.33 2.29
422 423 0.102481 GGCCGATCTTTCTCGCTACA 59.898 55.000 0.00 0.00 37.33 2.74
423 424 0.102481 TGGCCGATCTTTCTCGCTAC 59.898 55.000 0.00 0.00 37.33 3.58
424 425 0.385751 CTGGCCGATCTTTCTCGCTA 59.614 55.000 0.00 0.00 37.33 4.26
425 426 1.142748 CTGGCCGATCTTTCTCGCT 59.857 57.895 0.00 0.00 37.33 4.93
426 427 0.741221 AACTGGCCGATCTTTCTCGC 60.741 55.000 0.00 0.00 37.33 5.03
427 428 1.002366 CAACTGGCCGATCTTTCTCG 58.998 55.000 0.00 0.00 38.37 4.04
428 429 2.003301 GTCAACTGGCCGATCTTTCTC 58.997 52.381 0.00 0.00 0.00 2.87
429 430 1.625818 AGTCAACTGGCCGATCTTTCT 59.374 47.619 0.00 0.00 0.00 2.52
430 431 1.734465 CAGTCAACTGGCCGATCTTTC 59.266 52.381 0.00 0.00 40.20 2.62
431 432 1.347707 TCAGTCAACTGGCCGATCTTT 59.652 47.619 10.13 0.00 43.91 2.52
432 433 0.976641 TCAGTCAACTGGCCGATCTT 59.023 50.000 10.13 0.00 43.91 2.40
433 434 0.976641 TTCAGTCAACTGGCCGATCT 59.023 50.000 10.13 0.00 43.91 2.75
434 435 1.734465 CTTTCAGTCAACTGGCCGATC 59.266 52.381 10.13 0.00 43.91 3.69
435 436 1.813513 CTTTCAGTCAACTGGCCGAT 58.186 50.000 10.13 0.00 43.91 4.18
436 437 0.884704 GCTTTCAGTCAACTGGCCGA 60.885 55.000 10.13 0.00 43.91 5.54
437 438 0.886490 AGCTTTCAGTCAACTGGCCG 60.886 55.000 10.13 0.00 43.91 6.13
438 439 1.322442 AAGCTTTCAGTCAACTGGCC 58.678 50.000 10.13 0.00 43.91 5.36
439 440 3.443099 AAAAGCTTTCAGTCAACTGGC 57.557 42.857 13.10 6.11 43.91 4.85
440 441 4.098501 AGGAAAAAGCTTTCAGTCAACTGG 59.901 41.667 13.10 0.00 42.44 4.00
441 442 5.254339 AGGAAAAAGCTTTCAGTCAACTG 57.746 39.130 13.10 3.69 42.44 3.16
442 443 7.404671 TTTAGGAAAAAGCTTTCAGTCAACT 57.595 32.000 13.10 6.90 42.44 3.16
443 444 8.648557 ATTTTAGGAAAAAGCTTTCAGTCAAC 57.351 30.769 13.10 0.00 42.44 3.18
449 450 9.777297 AGCAATAATTTTAGGAAAAAGCTTTCA 57.223 25.926 13.10 0.00 42.44 2.69
471 472 9.868277 CATCTTTGTTAACCCAATAAATAGCAA 57.132 29.630 2.48 0.00 0.00 3.91
472 473 9.030452 ACATCTTTGTTAACCCAATAAATAGCA 57.970 29.630 2.48 0.00 29.55 3.49
473 474 9.516314 GACATCTTTGTTAACCCAATAAATAGC 57.484 33.333 2.48 0.00 35.79 2.97
476 477 9.308000 TCAGACATCTTTGTTAACCCAATAAAT 57.692 29.630 2.48 0.00 35.79 1.40
477 478 8.573035 GTCAGACATCTTTGTTAACCCAATAAA 58.427 33.333 2.48 0.00 35.79 1.40
478 479 7.094975 CGTCAGACATCTTTGTTAACCCAATAA 60.095 37.037 2.48 0.00 35.79 1.40
479 480 6.370442 CGTCAGACATCTTTGTTAACCCAATA 59.630 38.462 2.48 0.00 35.79 1.90
480 481 5.181245 CGTCAGACATCTTTGTTAACCCAAT 59.819 40.000 2.48 0.00 35.79 3.16
481 482 4.513692 CGTCAGACATCTTTGTTAACCCAA 59.486 41.667 2.48 0.00 35.79 4.12
482 483 4.062293 CGTCAGACATCTTTGTTAACCCA 58.938 43.478 2.48 0.00 35.79 4.51
483 484 4.062991 ACGTCAGACATCTTTGTTAACCC 58.937 43.478 2.48 0.00 35.79 4.11
484 485 5.924825 AGTACGTCAGACATCTTTGTTAACC 59.075 40.000 2.48 0.00 35.79 2.85
485 486 8.019669 TCTAGTACGTCAGACATCTTTGTTAAC 58.980 37.037 0.41 0.00 35.79 2.01
486 487 8.102800 TCTAGTACGTCAGACATCTTTGTTAA 57.897 34.615 0.41 0.00 35.79 2.01
487 488 7.677454 TCTAGTACGTCAGACATCTTTGTTA 57.323 36.000 0.41 0.00 35.79 2.41
488 489 6.570672 TCTAGTACGTCAGACATCTTTGTT 57.429 37.500 0.41 0.00 35.79 2.83
489 490 6.761099 ATCTAGTACGTCAGACATCTTTGT 57.239 37.500 0.41 0.00 39.32 2.83
490 491 8.467402 AAAATCTAGTACGTCAGACATCTTTG 57.533 34.615 0.41 0.00 0.00 2.77
491 492 9.570488 GTAAAATCTAGTACGTCAGACATCTTT 57.430 33.333 0.41 0.00 0.00 2.52
492 493 8.189460 GGTAAAATCTAGTACGTCAGACATCTT 58.811 37.037 0.41 0.00 0.00 2.40
493 494 7.338703 TGGTAAAATCTAGTACGTCAGACATCT 59.661 37.037 0.41 0.00 0.00 2.90
494 495 7.478322 TGGTAAAATCTAGTACGTCAGACATC 58.522 38.462 0.41 0.00 0.00 3.06
495 496 7.400599 TGGTAAAATCTAGTACGTCAGACAT 57.599 36.000 0.41 0.00 0.00 3.06
496 497 6.822667 TGGTAAAATCTAGTACGTCAGACA 57.177 37.500 0.41 0.00 0.00 3.41
497 498 8.834465 TCTATGGTAAAATCTAGTACGTCAGAC 58.166 37.037 0.00 0.00 0.00 3.51
498 499 8.969260 TCTATGGTAAAATCTAGTACGTCAGA 57.031 34.615 0.00 0.00 0.00 3.27
539 540 9.435688 CAATAAACGAGATCAATATATGGTCCA 57.564 33.333 0.00 0.00 40.27 4.02
540 541 8.883731 CCAATAAACGAGATCAATATATGGTCC 58.116 37.037 0.00 0.00 40.27 4.46
541 542 9.436957 ACCAATAAACGAGATCAATATATGGTC 57.563 33.333 0.00 0.00 39.65 4.02
542 543 9.793259 AACCAATAAACGAGATCAATATATGGT 57.207 29.630 0.00 0.00 0.00 3.55
547 548 9.847224 ACCTAAACCAATAAACGAGATCAATAT 57.153 29.630 0.00 0.00 0.00 1.28
548 549 9.675464 AACCTAAACCAATAAACGAGATCAATA 57.325 29.630 0.00 0.00 0.00 1.90
549 550 8.458843 CAACCTAAACCAATAAACGAGATCAAT 58.541 33.333 0.00 0.00 0.00 2.57
550 551 7.094549 CCAACCTAAACCAATAAACGAGATCAA 60.095 37.037 0.00 0.00 0.00 2.57
551 552 6.373216 CCAACCTAAACCAATAAACGAGATCA 59.627 38.462 0.00 0.00 0.00 2.92
552 553 6.373495 ACCAACCTAAACCAATAAACGAGATC 59.627 38.462 0.00 0.00 0.00 2.75
553 554 6.243148 ACCAACCTAAACCAATAAACGAGAT 58.757 36.000 0.00 0.00 0.00 2.75
554 555 5.623169 ACCAACCTAAACCAATAAACGAGA 58.377 37.500 0.00 0.00 0.00 4.04
555 556 5.952526 ACCAACCTAAACCAATAAACGAG 57.047 39.130 0.00 0.00 0.00 4.18
556 557 6.320672 TCAAACCAACCTAAACCAATAAACGA 59.679 34.615 0.00 0.00 0.00 3.85
557 558 6.505272 TCAAACCAACCTAAACCAATAAACG 58.495 36.000 0.00 0.00 0.00 3.60
558 559 8.896320 AATCAAACCAACCTAAACCAATAAAC 57.104 30.769 0.00 0.00 0.00 2.01
563 564 9.331282 CATTTTAATCAAACCAACCTAAACCAA 57.669 29.630 0.00 0.00 0.00 3.67
564 565 8.705594 TCATTTTAATCAAACCAACCTAAACCA 58.294 29.630 0.00 0.00 0.00 3.67
565 566 9.549078 TTCATTTTAATCAAACCAACCTAAACC 57.451 29.630 0.00 0.00 0.00 3.27
570 571 8.898761 GGTTTTTCATTTTAATCAAACCAACCT 58.101 29.630 6.72 0.00 41.83 3.50
571 572 7.853437 CGGTTTTTCATTTTAATCAAACCAACC 59.147 33.333 11.18 7.66 42.17 3.77
572 573 8.604890 TCGGTTTTTCATTTTAATCAAACCAAC 58.395 29.630 11.18 2.00 42.17 3.77
573 574 8.718102 TCGGTTTTTCATTTTAATCAAACCAA 57.282 26.923 11.18 0.00 42.17 3.67
574 575 8.198109 TCTCGGTTTTTCATTTTAATCAAACCA 58.802 29.630 11.18 0.15 42.17 3.67
575 576 8.582433 TCTCGGTTTTTCATTTTAATCAAACC 57.418 30.769 0.00 0.00 39.78 3.27
580 581 9.937577 CGATTTTCTCGGTTTTTCATTTTAATC 57.062 29.630 0.00 0.00 43.82 1.75
597 598 2.032675 GCCATCCTCAAGCGATTTTCTC 59.967 50.000 0.00 0.00 0.00 2.87
598 599 2.019984 GCCATCCTCAAGCGATTTTCT 58.980 47.619 0.00 0.00 0.00 2.52
599 600 1.745087 TGCCATCCTCAAGCGATTTTC 59.255 47.619 0.00 0.00 0.00 2.29
600 601 1.747355 CTGCCATCCTCAAGCGATTTT 59.253 47.619 0.00 0.00 0.00 1.82
601 602 1.386533 CTGCCATCCTCAAGCGATTT 58.613 50.000 0.00 0.00 0.00 2.17
602 603 0.465097 CCTGCCATCCTCAAGCGATT 60.465 55.000 0.00 0.00 0.00 3.34
603 604 1.147824 CCTGCCATCCTCAAGCGAT 59.852 57.895 0.00 0.00 0.00 4.58
604 605 1.552799 TTCCTGCCATCCTCAAGCGA 61.553 55.000 0.00 0.00 0.00 4.93
605 606 1.078214 TTCCTGCCATCCTCAAGCG 60.078 57.895 0.00 0.00 0.00 4.68
606 607 0.750911 CCTTCCTGCCATCCTCAAGC 60.751 60.000 0.00 0.00 0.00 4.01
607 608 0.914644 TCCTTCCTGCCATCCTCAAG 59.085 55.000 0.00 0.00 0.00 3.02
608 609 1.213678 CATCCTTCCTGCCATCCTCAA 59.786 52.381 0.00 0.00 0.00 3.02
609 610 0.841961 CATCCTTCCTGCCATCCTCA 59.158 55.000 0.00 0.00 0.00 3.86
610 611 1.135094 TCATCCTTCCTGCCATCCTC 58.865 55.000 0.00 0.00 0.00 3.71
611 612 1.493871 CTTCATCCTTCCTGCCATCCT 59.506 52.381 0.00 0.00 0.00 3.24
612 613 1.492176 TCTTCATCCTTCCTGCCATCC 59.508 52.381 0.00 0.00 0.00 3.51
613 614 3.287867 TTCTTCATCCTTCCTGCCATC 57.712 47.619 0.00 0.00 0.00 3.51
614 615 3.958798 CAATTCTTCATCCTTCCTGCCAT 59.041 43.478 0.00 0.00 0.00 4.40
615 616 3.359033 CAATTCTTCATCCTTCCTGCCA 58.641 45.455 0.00 0.00 0.00 4.92
616 617 2.692041 CCAATTCTTCATCCTTCCTGCC 59.308 50.000 0.00 0.00 0.00 4.85
617 618 2.692041 CCCAATTCTTCATCCTTCCTGC 59.308 50.000 0.00 0.00 0.00 4.85
618 619 3.053395 TCCCCAATTCTTCATCCTTCCTG 60.053 47.826 0.00 0.00 0.00 3.86
619 620 3.201363 TCCCCAATTCTTCATCCTTCCT 58.799 45.455 0.00 0.00 0.00 3.36
620 621 3.669939 TCCCCAATTCTTCATCCTTCC 57.330 47.619 0.00 0.00 0.00 3.46
621 622 6.358974 TTTTTCCCCAATTCTTCATCCTTC 57.641 37.500 0.00 0.00 0.00 3.46
690 691 9.006839 CCGGTTCATATATAGTAGTACAACTCA 57.993 37.037 2.52 0.00 0.00 3.41
691 692 7.967303 GCCGGTTCATATATAGTAGTACAACTC 59.033 40.741 1.90 0.00 0.00 3.01
692 693 7.361542 CGCCGGTTCATATATAGTAGTACAACT 60.362 40.741 1.90 0.00 0.00 3.16
693 694 6.744537 CGCCGGTTCATATATAGTAGTACAAC 59.255 42.308 1.90 0.00 0.00 3.32
694 695 6.654582 TCGCCGGTTCATATATAGTAGTACAA 59.345 38.462 1.90 0.00 0.00 2.41
695 696 6.172630 TCGCCGGTTCATATATAGTAGTACA 58.827 40.000 1.90 0.00 0.00 2.90
696 697 6.314896 ACTCGCCGGTTCATATATAGTAGTAC 59.685 42.308 1.90 0.00 0.00 2.73
697 698 6.409704 ACTCGCCGGTTCATATATAGTAGTA 58.590 40.000 1.90 0.00 0.00 1.82
698 699 5.251764 ACTCGCCGGTTCATATATAGTAGT 58.748 41.667 1.90 0.00 0.00 2.73
699 700 5.220815 GGACTCGCCGGTTCATATATAGTAG 60.221 48.000 1.90 0.00 0.00 2.57
700 701 4.637534 GGACTCGCCGGTTCATATATAGTA 59.362 45.833 1.90 0.00 0.00 1.82
701 702 3.442977 GGACTCGCCGGTTCATATATAGT 59.557 47.826 1.90 0.00 0.00 2.12
702 703 3.442625 TGGACTCGCCGGTTCATATATAG 59.557 47.826 1.90 0.00 40.66 1.31
703 704 3.423749 TGGACTCGCCGGTTCATATATA 58.576 45.455 1.90 0.00 40.66 0.86
704 705 2.244695 TGGACTCGCCGGTTCATATAT 58.755 47.619 1.90 0.00 40.66 0.86
705 706 1.694844 TGGACTCGCCGGTTCATATA 58.305 50.000 1.90 0.00 40.66 0.86
706 707 0.828022 TTGGACTCGCCGGTTCATAT 59.172 50.000 1.90 0.00 40.66 1.78
707 708 0.108520 GTTGGACTCGCCGGTTCATA 60.109 55.000 1.90 0.00 40.66 2.15
708 709 1.375523 GTTGGACTCGCCGGTTCAT 60.376 57.895 1.90 0.00 40.66 2.57
709 710 2.029964 GTTGGACTCGCCGGTTCA 59.970 61.111 1.90 0.00 40.66 3.18
710 711 2.029964 TGTTGGACTCGCCGGTTC 59.970 61.111 1.90 0.00 40.66 3.62
711 712 2.280592 GTGTTGGACTCGCCGGTT 60.281 61.111 1.90 0.00 40.66 4.44
712 713 1.537814 TATGTGTTGGACTCGCCGGT 61.538 55.000 1.90 0.00 40.66 5.28
713 714 1.082117 GTATGTGTTGGACTCGCCGG 61.082 60.000 0.00 0.00 40.66 6.13
714 715 1.410737 CGTATGTGTTGGACTCGCCG 61.411 60.000 0.00 0.00 40.66 6.46
715 716 0.108992 TCGTATGTGTTGGACTCGCC 60.109 55.000 0.00 0.00 37.10 5.54
716 717 1.269166 CTCGTATGTGTTGGACTCGC 58.731 55.000 0.00 0.00 0.00 5.03
717 718 1.469251 CCCTCGTATGTGTTGGACTCG 60.469 57.143 0.00 0.00 0.00 4.18
758 759 0.457166 TCACGTAGCACCATGTACGC 60.457 55.000 12.08 2.38 44.70 4.42
818 846 2.815503 CCGTCGTGGGGAAAGTATTTTT 59.184 45.455 0.00 0.00 39.27 1.94
819 847 2.429478 CCGTCGTGGGGAAAGTATTTT 58.571 47.619 0.00 0.00 39.27 1.82
820 848 2.103537 CCGTCGTGGGGAAAGTATTT 57.896 50.000 0.00 0.00 43.98 1.40
821 849 3.846955 CCGTCGTGGGGAAAGTATT 57.153 52.632 0.00 0.00 0.00 1.89
948 976 2.674357 GACTGTCAGACGAGACTAGTCC 59.326 54.545 19.38 9.91 38.84 3.85
949 977 2.674357 GGACTGTCAGACGAGACTAGTC 59.326 54.545 15.41 15.41 41.11 2.59
950 978 2.702261 GGACTGTCAGACGAGACTAGT 58.298 52.381 6.91 0.00 39.27 2.57
951 979 1.661617 CGGACTGTCAGACGAGACTAG 59.338 57.143 6.91 0.00 39.27 2.57
952 980 1.274447 TCGGACTGTCAGACGAGACTA 59.726 52.381 16.44 0.15 39.27 2.59
953 981 0.035036 TCGGACTGTCAGACGAGACT 59.965 55.000 16.44 0.00 39.27 3.24
954 982 0.166379 GTCGGACTGTCAGACGAGAC 59.834 60.000 21.83 15.26 32.42 3.36
955 983 0.035036 AGTCGGACTGTCAGACGAGA 59.965 55.000 27.17 9.03 44.47 4.04
956 984 0.444651 GAGTCGGACTGTCAGACGAG 59.555 60.000 27.17 7.18 44.47 4.18
957 985 1.289800 CGAGTCGGACTGTCAGACGA 61.290 60.000 27.17 16.64 44.47 4.20
958 986 1.132844 CGAGTCGGACTGTCAGACG 59.867 63.158 27.17 17.27 44.47 4.18
970 998 1.566018 GCAACCCAAAGTCCGAGTCG 61.566 60.000 5.29 5.29 0.00 4.18
971 999 0.534203 TGCAACCCAAAGTCCGAGTC 60.534 55.000 0.00 0.00 0.00 3.36
972 1000 0.106918 TTGCAACCCAAAGTCCGAGT 60.107 50.000 0.00 0.00 0.00 4.18
973 1001 0.310854 GTTGCAACCCAAAGTCCGAG 59.689 55.000 19.15 0.00 34.68 4.63
974 1002 0.394488 TGTTGCAACCCAAAGTCCGA 60.394 50.000 26.14 0.76 34.68 4.55
975 1003 0.030638 CTGTTGCAACCCAAAGTCCG 59.969 55.000 26.14 0.67 34.68 4.79
976 1004 0.389025 CCTGTTGCAACCCAAAGTCC 59.611 55.000 26.14 0.00 34.68 3.85
977 1005 0.389025 CCCTGTTGCAACCCAAAGTC 59.611 55.000 26.14 0.00 34.68 3.01
978 1006 1.685355 GCCCTGTTGCAACCCAAAGT 61.685 55.000 26.14 0.00 34.68 2.66
979 1007 1.069596 GCCCTGTTGCAACCCAAAG 59.930 57.895 26.14 16.22 34.68 2.77
980 1008 0.105964 TAGCCCTGTTGCAACCCAAA 60.106 50.000 26.14 7.14 34.68 3.28
981 1009 0.825840 GTAGCCCTGTTGCAACCCAA 60.826 55.000 26.14 7.52 0.00 4.12
982 1010 1.228429 GTAGCCCTGTTGCAACCCA 60.228 57.895 26.14 8.35 0.00 4.51
983 1011 0.326927 TAGTAGCCCTGTTGCAACCC 59.673 55.000 26.14 12.01 0.00 4.11
984 1012 2.420058 ATAGTAGCCCTGTTGCAACC 57.580 50.000 26.14 11.07 0.00 3.77
985 1013 6.934645 TCAATATATAGTAGCCCTGTTGCAAC 59.065 38.462 22.83 22.83 0.00 4.17
986 1014 6.934645 GTCAATATATAGTAGCCCTGTTGCAA 59.065 38.462 0.00 0.00 0.00 4.08
987 1015 6.464222 GTCAATATATAGTAGCCCTGTTGCA 58.536 40.000 0.00 0.00 0.00 4.08
988 1016 5.577164 CGTCAATATATAGTAGCCCTGTTGC 59.423 44.000 0.00 0.00 0.00 4.17
989 1017 5.577164 GCGTCAATATATAGTAGCCCTGTTG 59.423 44.000 0.00 0.00 0.00 3.33
990 1018 5.621555 CGCGTCAATATATAGTAGCCCTGTT 60.622 44.000 0.00 0.00 0.00 3.16
1035 1922 2.213499 GAAACCAGGTGCGAGATATGG 58.787 52.381 0.00 0.00 37.07 2.74
1190 2103 0.739462 CACGAAGCTGCCGGACATAA 60.739 55.000 5.05 0.00 0.00 1.90
1458 2380 2.505118 GTCTCGCAGCACTCCGTC 60.505 66.667 0.00 0.00 0.00 4.79
1494 2416 0.622665 CCCCTTGAAGCCTCATGTCT 59.377 55.000 0.00 0.00 0.00 3.41
1532 2460 3.348554 ATGGCCTTCAGCGCATCCA 62.349 57.895 11.47 7.47 45.17 3.41
1862 2797 2.754552 GTTAGCATTGGCAGGATGTGAA 59.245 45.455 1.47 0.00 44.61 3.18
1935 2871 1.739466 CACAACATCACCATCCGGAAG 59.261 52.381 9.01 3.04 35.59 3.46
2119 3061 0.602638 ACAGTTTCATCGGCGAGCAA 60.603 50.000 17.22 7.52 0.00 3.91
2425 3441 7.821846 TCTCCTGCAAATTAAACAAACAAGTTT 59.178 29.630 0.00 0.00 43.58 2.66
2461 3477 4.995124 ACACTACGATACACATCTGTTCC 58.005 43.478 0.00 0.00 0.00 3.62
2462 3478 7.701078 ACAATACACTACGATACACATCTGTTC 59.299 37.037 0.00 0.00 0.00 3.18
2495 3511 3.819564 TTCCTGTCATTATCACTCCGG 57.180 47.619 0.00 0.00 0.00 5.14
2578 3595 5.882557 AGTGGTTGTCTGGATGATATGTTTC 59.117 40.000 0.00 0.00 0.00 2.78
2582 3599 5.430886 TGAAGTGGTTGTCTGGATGATATG 58.569 41.667 0.00 0.00 0.00 1.78
2667 3685 3.686241 TCGCAGATCTGTTCCAAAATCTG 59.314 43.478 23.38 6.81 45.07 2.90
2674 3692 2.542020 TTTGTCGCAGATCTGTTCCA 57.458 45.000 23.38 14.00 40.67 3.53
2686 3704 1.621107 CCATCACTGCATTTTGTCGC 58.379 50.000 0.00 0.00 0.00 5.19
2690 3708 0.388778 TGCGCCATCACTGCATTTTG 60.389 50.000 4.18 0.00 32.86 2.44
2779 3797 9.860898 GAGATTAAGATGGCTTAAAATTGTTGT 57.139 29.630 0.00 0.00 46.44 3.32
2807 3825 0.044246 GACGCGTTTGTGCTTTTTGC 60.044 50.000 15.53 0.00 43.25 3.68
2814 3832 2.244651 ACTCTGGACGCGTTTGTGC 61.245 57.895 15.53 0.00 0.00 4.57
2815 3833 0.874175 TCACTCTGGACGCGTTTGTG 60.874 55.000 15.53 17.23 0.00 3.33
2816 3834 0.597637 CTCACTCTGGACGCGTTTGT 60.598 55.000 15.53 5.45 0.00 2.83
2817 3835 0.597637 ACTCACTCTGGACGCGTTTG 60.598 55.000 15.53 6.99 0.00 2.93
2818 3836 0.956633 TACTCACTCTGGACGCGTTT 59.043 50.000 15.53 0.00 0.00 3.60
2821 3839 0.733150 TCATACTCACTCTGGACGCG 59.267 55.000 3.53 3.53 0.00 6.01
2822 3840 1.066303 CCTCATACTCACTCTGGACGC 59.934 57.143 0.00 0.00 0.00 5.19
2823 3841 2.098280 CACCTCATACTCACTCTGGACG 59.902 54.545 0.00 0.00 0.00 4.79
2825 3843 3.092301 CACACCTCATACTCACTCTGGA 58.908 50.000 0.00 0.00 0.00 3.86
2828 3846 5.268387 AGAATCACACCTCATACTCACTCT 58.732 41.667 0.00 0.00 0.00 3.24
2859 3888 7.362315 CCAGTGACTGATATGCAAGATGAAAAA 60.362 37.037 15.33 0.00 32.44 1.94
2875 3904 3.777106 AAAATGAGCTCCAGTGACTGA 57.223 42.857 15.33 0.00 32.44 3.41
2884 3913 5.928264 ACATTGCAAAGTAAAAATGAGCTCC 59.072 36.000 12.15 0.00 34.75 4.70
2896 3925 6.622679 GCAGCTTATGTACACATTGCAAAGTA 60.623 38.462 7.05 6.35 36.74 2.24
2911 3940 0.835941 CTCCCTCCAGCAGCTTATGT 59.164 55.000 0.00 0.00 0.00 2.29
2980 4009 1.188863 GACCTGCCAAATGCTCCATT 58.811 50.000 0.00 0.00 42.00 3.16
3051 4086 1.092348 GGTATGAACAAGGCGGAACC 58.908 55.000 0.00 0.00 39.61 3.62
3069 4105 5.589855 TGCCATATACAATGTTCAGTTGAGG 59.410 40.000 0.00 0.00 0.00 3.86
3090 4126 3.873952 GTGACAAGGATAACTGATCTGCC 59.126 47.826 0.00 0.00 34.66 4.85
3148 4184 7.068962 ACTCCCTCTGTAAACTAATCTAAGAGC 59.931 40.741 0.00 0.00 0.00 4.09
3151 4187 8.354426 GCTACTCCCTCTGTAAACTAATCTAAG 58.646 40.741 0.00 0.00 0.00 2.18
3152 4188 8.060075 AGCTACTCCCTCTGTAAACTAATCTAA 58.940 37.037 0.00 0.00 0.00 2.10
3155 4191 6.718522 AGCTACTCCCTCTGTAAACTAATC 57.281 41.667 0.00 0.00 0.00 1.75
3157 4193 5.187186 CCAAGCTACTCCCTCTGTAAACTAA 59.813 44.000 0.00 0.00 0.00 2.24
3158 4194 4.710375 CCAAGCTACTCCCTCTGTAAACTA 59.290 45.833 0.00 0.00 0.00 2.24
3159 4195 3.515901 CCAAGCTACTCCCTCTGTAAACT 59.484 47.826 0.00 0.00 0.00 2.66
3161 4197 3.786553 TCCAAGCTACTCCCTCTGTAAA 58.213 45.455 0.00 0.00 0.00 2.01
3163 4199 3.097614 GTTCCAAGCTACTCCCTCTGTA 58.902 50.000 0.00 0.00 0.00 2.74
3165 4201 1.902508 TGTTCCAAGCTACTCCCTCTG 59.097 52.381 0.00 0.00 0.00 3.35
3166 4202 2.327325 TGTTCCAAGCTACTCCCTCT 57.673 50.000 0.00 0.00 0.00 3.69
3167 4203 2.501723 TCATGTTCCAAGCTACTCCCTC 59.498 50.000 0.00 0.00 0.00 4.30
3168 4204 2.503356 CTCATGTTCCAAGCTACTCCCT 59.497 50.000 0.00 0.00 0.00 4.20
3169 4205 2.501723 TCTCATGTTCCAAGCTACTCCC 59.498 50.000 0.00 0.00 0.00 4.30
3170 4206 3.449018 TCTCTCATGTTCCAAGCTACTCC 59.551 47.826 0.00 0.00 0.00 3.85
3172 4208 4.682859 GCATCTCTCATGTTCCAAGCTACT 60.683 45.833 0.00 0.00 0.00 2.57
3195 4237 4.604843 ATCAGACATACAAACATGCACG 57.395 40.909 0.00 0.00 0.00 5.34
3240 4283 6.183360 TGTTTGGTTGTCAGTTTATGTCAGTC 60.183 38.462 0.00 0.00 0.00 3.51
3313 4562 2.170166 TGCATTCCAATCCAACCTGAC 58.830 47.619 0.00 0.00 0.00 3.51
3314 4563 2.601240 TGCATTCCAATCCAACCTGA 57.399 45.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.