Multiple sequence alignment - TraesCS2D01G305100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G305100 chr2D 100.000 3685 0 0 368 4052 390736398 390732714 0.000000e+00 6806
1 TraesCS2D01G305100 chr2D 100.000 61 0 0 1 61 390736765 390736705 3.310000e-21 113
2 TraesCS2D01G305100 chr2A 97.325 3178 81 2 878 4052 527464168 527460992 0.000000e+00 5395
3 TraesCS2D01G305100 chr2B 96.815 3171 85 4 878 4033 461984204 461981035 0.000000e+00 5282
4 TraesCS2D01G305100 chr2B 91.373 510 39 2 368 874 675386286 675386793 0.000000e+00 693
5 TraesCS2D01G305100 chr3D 91.373 510 41 2 368 874 560236657 560236148 0.000000e+00 695
6 TraesCS2D01G305100 chr3D 89.168 517 46 6 368 876 552237472 552237986 1.590000e-178 636
7 TraesCS2D01G305100 chr5D 91.339 508 41 2 370 874 366899648 366899141 0.000000e+00 691
8 TraesCS2D01G305100 chr4B 90.998 511 41 3 370 877 135100083 135099575 0.000000e+00 684
9 TraesCS2D01G305100 chr4A 92.373 472 32 3 410 877 596966585 596967056 0.000000e+00 669
10 TraesCS2D01G305100 chr3B 89.194 509 52 2 370 875 164467911 164468419 2.050000e-177 632
11 TraesCS2D01G305100 chr1A 87.891 512 55 6 368 875 299493486 299493994 2.700000e-166 595
12 TraesCS2D01G305100 chr1A 87.573 515 60 4 370 881 448729405 448729918 9.700000e-166 593


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G305100 chr2D 390732714 390736765 4051 True 3459.5 6806 100.000 1 4052 2 chr2D.!!$R1 4051
1 TraesCS2D01G305100 chr2A 527460992 527464168 3176 True 5395.0 5395 97.325 878 4052 1 chr2A.!!$R1 3174
2 TraesCS2D01G305100 chr2B 461981035 461984204 3169 True 5282.0 5282 96.815 878 4033 1 chr2B.!!$R1 3155
3 TraesCS2D01G305100 chr2B 675386286 675386793 507 False 693.0 693 91.373 368 874 1 chr2B.!!$F1 506
4 TraesCS2D01G305100 chr3D 560236148 560236657 509 True 695.0 695 91.373 368 874 1 chr3D.!!$R1 506
5 TraesCS2D01G305100 chr3D 552237472 552237986 514 False 636.0 636 89.168 368 876 1 chr3D.!!$F1 508
6 TraesCS2D01G305100 chr5D 366899141 366899648 507 True 691.0 691 91.339 370 874 1 chr5D.!!$R1 504
7 TraesCS2D01G305100 chr4B 135099575 135100083 508 True 684.0 684 90.998 370 877 1 chr4B.!!$R1 507
8 TraesCS2D01G305100 chr3B 164467911 164468419 508 False 632.0 632 89.194 370 875 1 chr3B.!!$F1 505
9 TraesCS2D01G305100 chr1A 299493486 299493994 508 False 595.0 595 87.891 368 875 1 chr1A.!!$F1 507
10 TraesCS2D01G305100 chr1A 448729405 448729918 513 False 593.0 593 87.573 370 881 1 chr1A.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.101579 GGCTCAGGCTCGAACTCTAC 59.898 60.0 0.00 0.0 38.73 2.59 F
1705 1726 0.110823 GGCGCTTGTACTGTTTGTCG 60.111 55.0 7.64 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1744 0.107703 GTCACCTCATCGGGCATGAA 60.108 55.0 0.0 0.0 41.25 2.57 R
3253 3275 0.107897 AGCCACTGTCACGTTGTCAA 60.108 50.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.540265 AGAAGCTCTGGCGATATTGG 57.460 50.000 0.00 0.00 44.37 3.16
21 22 2.042464 AGAAGCTCTGGCGATATTGGA 58.958 47.619 0.00 0.00 44.37 3.53
22 23 2.435805 AGAAGCTCTGGCGATATTGGAA 59.564 45.455 0.00 0.00 44.37 3.53
23 24 2.246719 AGCTCTGGCGATATTGGAAC 57.753 50.000 0.00 0.00 44.37 3.62
24 25 1.765314 AGCTCTGGCGATATTGGAACT 59.235 47.619 0.00 0.00 44.37 3.01
25 26 2.965831 AGCTCTGGCGATATTGGAACTA 59.034 45.455 0.00 0.00 44.37 2.24
26 27 3.060602 GCTCTGGCGATATTGGAACTAC 58.939 50.000 0.00 0.00 0.00 2.73
27 28 3.654414 CTCTGGCGATATTGGAACTACC 58.346 50.000 0.00 0.00 39.54 3.18
28 29 2.367567 TCTGGCGATATTGGAACTACCC 59.632 50.000 0.00 0.00 38.00 3.69
29 30 2.104111 CTGGCGATATTGGAACTACCCA 59.896 50.000 0.00 0.00 38.00 4.51
30 31 2.104111 TGGCGATATTGGAACTACCCAG 59.896 50.000 0.00 0.00 37.53 4.45
31 32 2.550208 GGCGATATTGGAACTACCCAGG 60.550 54.545 0.00 0.00 37.53 4.45
32 33 2.550208 GCGATATTGGAACTACCCAGGG 60.550 54.545 2.85 2.85 37.53 4.45
33 34 2.550208 CGATATTGGAACTACCCAGGGC 60.550 54.545 4.91 0.00 37.53 5.19
34 35 2.280308 TATTGGAACTACCCAGGGCT 57.720 50.000 4.91 0.00 37.53 5.19
35 36 0.919710 ATTGGAACTACCCAGGGCTC 59.080 55.000 4.91 0.00 37.53 4.70
36 37 0.474854 TTGGAACTACCCAGGGCTCA 60.475 55.000 4.91 0.00 37.53 4.26
37 38 0.909610 TGGAACTACCCAGGGCTCAG 60.910 60.000 4.91 2.78 38.00 3.35
38 39 1.627297 GGAACTACCCAGGGCTCAGG 61.627 65.000 4.91 0.00 0.00 3.86
39 40 2.258748 GAACTACCCAGGGCTCAGGC 62.259 65.000 4.91 0.00 37.82 4.85
40 41 2.366167 CTACCCAGGGCTCAGGCT 60.366 66.667 4.91 0.00 38.73 4.58
41 42 2.365635 TACCCAGGGCTCAGGCTC 60.366 66.667 4.91 0.00 39.72 4.70
44 45 3.393970 CCAGGGCTCAGGCTCGAA 61.394 66.667 0.00 0.00 45.11 3.71
45 46 2.125350 CAGGGCTCAGGCTCGAAC 60.125 66.667 0.00 0.00 45.11 3.95
46 47 2.284258 AGGGCTCAGGCTCGAACT 60.284 61.111 0.00 0.00 45.11 3.01
47 48 2.185608 GGGCTCAGGCTCGAACTC 59.814 66.667 0.00 0.00 38.73 3.01
48 49 2.355193 GGGCTCAGGCTCGAACTCT 61.355 63.158 0.00 0.00 38.73 3.24
49 50 1.038130 GGGCTCAGGCTCGAACTCTA 61.038 60.000 0.00 0.00 38.73 2.43
50 51 0.101579 GGCTCAGGCTCGAACTCTAC 59.898 60.000 0.00 0.00 38.73 2.59
51 52 0.101579 GCTCAGGCTCGAACTCTACC 59.898 60.000 0.00 0.00 35.22 3.18
52 53 0.741915 CTCAGGCTCGAACTCTACCC 59.258 60.000 0.00 0.00 0.00 3.69
53 54 1.030488 TCAGGCTCGAACTCTACCCG 61.030 60.000 0.00 0.00 0.00 5.28
54 55 1.753463 AGGCTCGAACTCTACCCGG 60.753 63.158 0.00 0.00 0.00 5.73
55 56 1.751927 GGCTCGAACTCTACCCGGA 60.752 63.158 0.73 0.00 0.00 5.14
56 57 1.108132 GGCTCGAACTCTACCCGGAT 61.108 60.000 0.73 0.00 0.00 4.18
57 58 0.745468 GCTCGAACTCTACCCGGATT 59.255 55.000 0.73 0.00 0.00 3.01
58 59 1.269154 GCTCGAACTCTACCCGGATTC 60.269 57.143 0.73 0.00 0.00 2.52
59 60 1.002684 CTCGAACTCTACCCGGATTCG 60.003 57.143 0.73 8.69 42.63 3.34
397 398 2.679837 GCATCAAGATCAACACCGATGT 59.320 45.455 0.00 0.00 42.46 3.06
432 433 4.806936 CAAGGCTTGCTGGAGTGA 57.193 55.556 15.25 0.00 0.00 3.41
456 457 1.264020 GTGTTGCACGCTCATCTTCAA 59.736 47.619 0.00 0.00 0.00 2.69
480 481 0.957395 CATCGGAGCTTGGTGCAAGT 60.957 55.000 0.00 0.00 42.77 3.16
734 738 0.463833 CTAATGTTCCGGCCCACCTC 60.464 60.000 0.00 0.00 0.00 3.85
797 801 1.089978 TGAACTCTCCCCCTGGACTA 58.910 55.000 0.00 0.00 35.03 2.59
908 915 1.084370 AGTTCTGGCGCGTATTCAGC 61.084 55.000 8.43 0.00 0.00 4.26
910 917 1.358725 TTCTGGCGCGTATTCAGCAC 61.359 55.000 8.43 0.00 34.19 4.40
1578 1599 2.877097 TGGACATGTATGCCAAGTGT 57.123 45.000 0.00 0.00 33.29 3.55
1692 1713 4.335647 CCTGTGGGTGAGGCGCTT 62.336 66.667 7.64 0.00 0.00 4.68
1705 1726 0.110823 GGCGCTTGTACTGTTTGTCG 60.111 55.000 7.64 0.00 0.00 4.35
1723 1744 3.116091 GGGATGATGAATGCCGGTT 57.884 52.632 1.90 0.00 36.98 4.44
1725 1746 1.338020 GGGATGATGAATGCCGGTTTC 59.662 52.381 1.90 7.84 36.98 2.78
1726 1747 2.023673 GGATGATGAATGCCGGTTTCA 58.976 47.619 19.77 19.77 37.49 2.69
1764 1785 1.605232 CTTGCAAGTGTGATGAGTGCA 59.395 47.619 18.65 0.00 43.12 4.57
1875 1896 1.195115 ACGCTCTGGTGGACATGTAT 58.805 50.000 0.00 0.00 0.00 2.29
1953 1974 3.748568 GGAGTGTTGTCTCTGAAACATCC 59.251 47.826 0.00 3.01 38.47 3.51
2013 2034 1.475034 GCTCAGGTGGTGTTCTCACAA 60.475 52.381 0.98 0.00 45.45 3.33
2019 2040 2.693074 GGTGGTGTTCTCACAAATGGTT 59.307 45.455 0.98 0.00 45.45 3.67
2104 2125 0.460459 GGCACTTAGGCTCTTCGTCC 60.460 60.000 0.00 0.00 40.24 4.79
2122 2143 1.691976 TCCGGCTGAAAAGAGAGTCAA 59.308 47.619 0.00 0.00 0.00 3.18
2157 2178 6.960992 CACATTACACATACGGAAATGTTCTG 59.039 38.462 0.00 0.00 38.39 3.02
2250 2271 1.946768 CGCTTTGACTTTGGACCAGAA 59.053 47.619 0.00 0.00 0.00 3.02
2502 2523 1.108776 CCTGTGGCCATTCTGGATTG 58.891 55.000 9.72 0.00 40.96 2.67
2628 2649 6.109359 CGGTCATCTAAAAGAAGTTGAGGAT 58.891 40.000 0.00 0.00 0.00 3.24
2724 2745 9.790344 CATAAGAATATTGAGATGGGAGAACTT 57.210 33.333 0.00 0.00 0.00 2.66
2784 2805 4.026744 CTGGACCCTATGTTCTTCTCTCA 58.973 47.826 0.00 0.00 0.00 3.27
2934 2955 1.202371 GCACGAGATAACGGACATCCA 60.202 52.381 0.00 0.00 37.61 3.41
3021 3042 2.026641 GCTGAAAATGCTGATGGCCTA 58.973 47.619 3.32 0.00 40.92 3.93
3024 3045 4.279169 GCTGAAAATGCTGATGGCCTAATA 59.721 41.667 3.32 0.00 40.92 0.98
3072 3093 5.346181 AGAACTAGAAGGCTTGATACACC 57.654 43.478 3.46 0.00 0.00 4.16
3098 3119 3.881688 CAGGTTGGAAGATCATGGATGAC 59.118 47.826 0.00 0.00 40.03 3.06
3220 3242 5.704515 ACTTTTCTGATCTGAGTTGTGGATG 59.295 40.000 2.33 0.00 0.00 3.51
3250 3272 3.944650 TGAAACTCTTACAAAGTGCTGCA 59.055 39.130 0.00 0.00 0.00 4.41
3253 3275 3.480470 ACTCTTACAAAGTGCTGCATGT 58.520 40.909 5.27 9.17 0.00 3.21
3261 3283 0.308684 AGTGCTGCATGTTGACAACG 59.691 50.000 13.46 1.62 0.00 4.10
3502 3524 2.283145 AGCAAAGTTCAGGAGCATGT 57.717 45.000 0.00 0.00 0.00 3.21
3506 3528 3.144506 CAAAGTTCAGGAGCATGTGTCT 58.855 45.455 0.00 0.00 0.00 3.41
3532 3554 0.610232 AGCTAGCAAACAAGCCCCAG 60.610 55.000 18.83 0.00 39.64 4.45
3742 3764 0.251386 TCGTGGTCCTTCTGCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.435805 TCCAATATCGCCAGAGCTTCTT 59.564 45.455 0.00 0.00 36.60 2.52
1 2 2.042464 TCCAATATCGCCAGAGCTTCT 58.958 47.619 0.00 0.00 36.60 2.85
2 3 2.533266 TCCAATATCGCCAGAGCTTC 57.467 50.000 0.00 0.00 36.60 3.86
3 4 2.171448 AGTTCCAATATCGCCAGAGCTT 59.829 45.455 0.00 0.00 36.60 3.74
4 5 1.765314 AGTTCCAATATCGCCAGAGCT 59.235 47.619 0.00 0.00 36.60 4.09
5 6 2.246719 AGTTCCAATATCGCCAGAGC 57.753 50.000 0.00 0.00 0.00 4.09
6 7 3.555168 GGGTAGTTCCAATATCGCCAGAG 60.555 52.174 0.00 0.00 38.11 3.35
7 8 2.367567 GGGTAGTTCCAATATCGCCAGA 59.632 50.000 0.00 0.00 38.11 3.86
8 9 2.104111 TGGGTAGTTCCAATATCGCCAG 59.896 50.000 0.00 0.00 38.11 4.85
9 10 2.104111 CTGGGTAGTTCCAATATCGCCA 59.896 50.000 0.00 0.00 36.21 5.69
10 11 2.550208 CCTGGGTAGTTCCAATATCGCC 60.550 54.545 0.00 0.00 36.21 5.54
11 12 2.550208 CCCTGGGTAGTTCCAATATCGC 60.550 54.545 3.97 0.00 36.21 4.58
12 13 2.550208 GCCCTGGGTAGTTCCAATATCG 60.550 54.545 15.56 0.00 36.21 2.92
13 14 2.711547 AGCCCTGGGTAGTTCCAATATC 59.288 50.000 15.56 0.00 36.21 1.63
14 15 2.711547 GAGCCCTGGGTAGTTCCAATAT 59.288 50.000 15.56 0.00 36.21 1.28
15 16 2.124411 GAGCCCTGGGTAGTTCCAATA 58.876 52.381 15.56 0.00 36.21 1.90
16 17 0.919710 GAGCCCTGGGTAGTTCCAAT 59.080 55.000 15.56 0.00 36.21 3.16
17 18 0.474854 TGAGCCCTGGGTAGTTCCAA 60.475 55.000 15.56 0.00 36.21 3.53
18 19 0.909610 CTGAGCCCTGGGTAGTTCCA 60.910 60.000 15.56 3.04 38.11 3.53
19 20 1.627297 CCTGAGCCCTGGGTAGTTCC 61.627 65.000 15.56 0.00 0.00 3.62
20 21 1.908483 CCTGAGCCCTGGGTAGTTC 59.092 63.158 15.56 8.01 0.00 3.01
21 22 2.301738 GCCTGAGCCCTGGGTAGTT 61.302 63.158 15.56 0.00 32.58 2.24
22 23 2.689034 GCCTGAGCCCTGGGTAGT 60.689 66.667 15.56 0.00 32.58 2.73
23 24 2.366167 AGCCTGAGCCCTGGGTAG 60.366 66.667 15.56 10.35 39.81 3.18
24 25 2.365635 GAGCCTGAGCCCTGGGTA 60.366 66.667 15.56 0.30 41.33 3.69
27 28 3.393970 TTCGAGCCTGAGCCCTGG 61.394 66.667 0.00 0.00 41.25 4.45
28 29 2.125350 GTTCGAGCCTGAGCCCTG 60.125 66.667 0.00 0.00 41.25 4.45
29 30 2.284258 AGTTCGAGCCTGAGCCCT 60.284 61.111 0.00 0.00 41.25 5.19
30 31 1.038130 TAGAGTTCGAGCCTGAGCCC 61.038 60.000 0.00 0.00 41.25 5.19
31 32 0.101579 GTAGAGTTCGAGCCTGAGCC 59.898 60.000 0.00 0.00 41.25 4.70
32 33 0.101579 GGTAGAGTTCGAGCCTGAGC 59.898 60.000 0.00 0.00 40.32 4.26
33 34 0.741915 GGGTAGAGTTCGAGCCTGAG 59.258 60.000 0.00 0.00 36.42 3.35
34 35 1.030488 CGGGTAGAGTTCGAGCCTGA 61.030 60.000 8.48 0.00 37.06 3.86
35 36 1.433879 CGGGTAGAGTTCGAGCCTG 59.566 63.158 8.48 0.26 37.06 4.85
36 37 1.753463 CCGGGTAGAGTTCGAGCCT 60.753 63.158 8.48 0.00 37.06 4.58
37 38 1.108132 ATCCGGGTAGAGTTCGAGCC 61.108 60.000 0.00 0.99 36.07 4.70
38 39 0.745468 AATCCGGGTAGAGTTCGAGC 59.255 55.000 0.00 0.00 0.00 5.03
39 40 1.002684 CGAATCCGGGTAGAGTTCGAG 60.003 57.143 0.00 0.00 42.94 4.04
40 41 1.019673 CGAATCCGGGTAGAGTTCGA 58.980 55.000 0.00 0.00 42.94 3.71
41 42 3.546407 CGAATCCGGGTAGAGTTCG 57.454 57.895 0.00 0.00 36.21 3.95
397 398 3.515502 CCTTGCCTCCATCGATATTCCTA 59.484 47.826 0.00 0.00 0.00 2.94
432 433 0.671781 GATGAGCGTGCAACACCTCT 60.672 55.000 13.59 3.42 35.74 3.69
456 457 0.036010 CACCAAGCTCCGATGAAGGT 60.036 55.000 0.00 0.00 0.00 3.50
480 481 3.050339 GGTAACACCACGGACCGA 58.950 61.111 23.38 0.00 38.42 4.69
623 624 1.537135 GCTATGAGGGAGCACGAAGAC 60.537 57.143 0.00 0.00 39.84 3.01
889 896 1.084370 GCTGAATACGCGCCAGAACT 61.084 55.000 18.28 0.00 0.00 3.01
908 915 1.972872 ACTGAGAAACAAGGGCAGTG 58.027 50.000 0.00 0.00 38.30 3.66
910 917 1.532868 CGAACTGAGAAACAAGGGCAG 59.467 52.381 0.00 0.00 0.00 4.85
1692 1713 3.259625 TCATCATCCCGACAAACAGTACA 59.740 43.478 0.00 0.00 0.00 2.90
1705 1726 1.338020 GAAACCGGCATTCATCATCCC 59.662 52.381 14.04 0.00 0.00 3.85
1723 1744 0.107703 GTCACCTCATCGGGCATGAA 60.108 55.000 0.00 0.00 41.25 2.57
1725 1746 1.091771 GTGTCACCTCATCGGGCATG 61.092 60.000 0.00 0.00 36.97 4.06
1726 1747 1.221840 GTGTCACCTCATCGGGCAT 59.778 57.895 0.00 0.00 36.97 4.40
1755 1776 3.104766 CCCGCACATGCACTCATC 58.895 61.111 4.49 0.00 42.21 2.92
1782 1803 1.153939 CTGCCGTCCTTCTCTGTCG 60.154 63.158 0.00 0.00 0.00 4.35
1785 1806 0.390472 GAACCTGCCGTCCTTCTCTG 60.390 60.000 0.00 0.00 0.00 3.35
1875 1896 0.409092 ATGTCCTCCCACATTTGGCA 59.591 50.000 0.00 0.00 42.35 4.92
1953 1974 0.249120 TTGCGTACCCAGTGATGAGG 59.751 55.000 0.00 0.00 0.00 3.86
1987 2008 1.808945 GAACACCACCTGAGCATCTTG 59.191 52.381 0.00 0.00 34.92 3.02
2013 2034 5.479375 AGCAATGACATTCTTCTCAACCATT 59.521 36.000 0.00 0.00 0.00 3.16
2019 2040 4.654915 TCCAAGCAATGACATTCTTCTCA 58.345 39.130 0.00 0.00 0.00 3.27
2064 2085 1.608717 CCTCCTCCTCACCGTTCTGG 61.609 65.000 0.00 0.00 46.41 3.86
2100 2121 0.038159 ACTCTCTTTTCAGCCGGACG 60.038 55.000 5.05 0.00 0.00 4.79
2104 2125 4.470462 CAAATTGACTCTCTTTTCAGCCG 58.530 43.478 0.00 0.00 0.00 5.52
2122 2143 4.888326 ATGTGTAATGTGTTGGCCAAAT 57.112 36.364 22.47 7.65 0.00 2.32
2250 2271 5.047092 GGAATTCCCAACAAACACATCAGAT 60.047 40.000 14.03 0.00 34.14 2.90
2376 2397 2.690778 GCCGTTCTGTGCATGACCC 61.691 63.158 0.00 0.00 0.00 4.46
2628 2649 4.413189 TCCATTGGCATCTCCTTTATGAGA 59.587 41.667 0.00 0.00 45.01 3.27
2724 2745 0.746063 CAAACAACTTCCCAGCTGCA 59.254 50.000 8.66 0.00 0.00 4.41
2772 2793 6.531594 CAGCGTACATATTTGAGAGAAGAACA 59.468 38.462 0.00 0.00 0.00 3.18
2784 2805 3.199071 TCCCCAACTCAGCGTACATATTT 59.801 43.478 0.00 0.00 0.00 1.40
2934 2955 6.215023 AGGTATCATGTATCTCATTCCTGCAT 59.785 38.462 0.00 0.00 34.09 3.96
3072 3093 2.426024 CCATGATCTTCCAACCTGCAAG 59.574 50.000 0.00 0.00 0.00 4.01
3098 3119 0.953471 TTTCATCACCGGGTTCTGCG 60.953 55.000 6.32 0.00 0.00 5.18
3220 3242 7.402640 CACTTTGTAAGAGTTTCAGTCTTCAC 58.597 38.462 0.00 0.00 38.68 3.18
3250 3272 1.939934 CCACTGTCACGTTGTCAACAT 59.060 47.619 15.79 0.00 0.00 2.71
3253 3275 0.107897 AGCCACTGTCACGTTGTCAA 60.108 50.000 0.00 0.00 0.00 3.18
3502 3524 5.468540 TGTTTGCTAGCTTCTCTTAGACA 57.531 39.130 17.23 2.26 0.00 3.41
3506 3528 4.003648 GGCTTGTTTGCTAGCTTCTCTTA 58.996 43.478 17.23 0.00 41.90 2.10
3532 3554 2.104170 AGGGATCTCGAGGAAGTCAAC 58.896 52.381 13.56 3.84 0.00 3.18
3604 3626 7.736893 ACCAGGTTAATATAGGTGAAGATGAC 58.263 38.462 0.00 0.00 0.00 3.06
3909 3931 1.286553 ACACTGTTTTGGGACTTGGGA 59.713 47.619 0.00 0.00 0.00 4.37
4008 4030 5.948162 AGTGTTGCATCTTTCATGGTAAGAT 59.052 36.000 14.49 14.49 41.73 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.