Multiple sequence alignment - TraesCS2D01G305000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G305000 chr2D 100.000 4591 0 0 1 4591 390734079 390729489 0.000000e+00 8479.0
1 TraesCS2D01G305000 chr2A 97.704 2352 53 1 1 2352 527462356 527460006 0.000000e+00 4043.0
2 TraesCS2D01G305000 chr2A 97.260 1314 29 4 2333 3645 527459277 527457970 0.000000e+00 2220.0
3 TraesCS2D01G305000 chr2A 89.541 392 18 11 4124 4500 527379876 527379493 4.160000e-130 475.0
4 TraesCS2D01G305000 chr2A 89.606 279 7 5 3639 3911 527380234 527379972 7.360000e-88 335.0
5 TraesCS2D01G305000 chr2A 92.035 226 7 2 3912 4126 527457742 527457967 1.600000e-79 307.0
6 TraesCS2D01G305000 chr2B 96.419 2318 67 6 1331 3645 461981015 461978711 0.000000e+00 3807.0
7 TraesCS2D01G305000 chr2B 97.849 1348 27 2 1 1347 461982381 461981035 0.000000e+00 2327.0
8 TraesCS2D01G305000 chr2B 84.752 282 31 8 3638 3915 461889130 461888857 5.850000e-69 272.0
9 TraesCS2D01G305000 chr2B 97.015 67 2 0 4525 4591 49385580 49385646 3.750000e-21 113.0
10 TraesCS2D01G305000 chr2B 97.015 67 2 0 4525 4591 165113530 165113596 3.750000e-21 113.0
11 TraesCS2D01G305000 chr2B 91.489 47 4 0 3720 3766 448261426 448261380 1.070000e-06 65.8
12 TraesCS2D01G305000 chr7A 97.015 67 2 0 4525 4591 658179248 658179314 3.750000e-21 113.0
13 TraesCS2D01G305000 chr6A 97.015 67 2 0 4525 4591 122790495 122790561 3.750000e-21 113.0
14 TraesCS2D01G305000 chr5B 97.015 67 2 0 4525 4591 65968029 65968095 3.750000e-21 113.0
15 TraesCS2D01G305000 chr4B 96.970 66 2 0 4525 4590 500506755 500506690 1.350000e-20 111.0
16 TraesCS2D01G305000 chr6D 95.522 67 3 0 4525 4591 54537148 54537214 1.750000e-19 108.0
17 TraesCS2D01G305000 chr6D 95.522 67 3 0 4525 4591 461506498 461506564 1.750000e-19 108.0
18 TraesCS2D01G305000 chr6D 96.774 31 1 0 3718 3748 337507570 337507600 8.000000e-03 52.8
19 TraesCS2D01G305000 chr1A 95.522 67 3 0 4525 4591 47792980 47793046 1.750000e-19 108.0
20 TraesCS2D01G305000 chr3B 93.750 48 3 0 3720 3767 23161158 23161205 6.370000e-09 73.1
21 TraesCS2D01G305000 chr3A 95.455 44 2 0 3726 3769 600438336 600438379 2.290000e-08 71.3
22 TraesCS2D01G305000 chr7D 77.692 130 16 10 3726 3853 244555799 244555917 2.960000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G305000 chr2D 390729489 390734079 4590 True 8479.0 8479 100.0000 1 4591 1 chr2D.!!$R1 4590
1 TraesCS2D01G305000 chr2A 527457970 527462356 4386 True 3131.5 4043 97.4820 1 3645 2 chr2A.!!$R2 3644
2 TraesCS2D01G305000 chr2A 527379493 527380234 741 True 405.0 475 89.5735 3639 4500 2 chr2A.!!$R1 861
3 TraesCS2D01G305000 chr2B 461978711 461982381 3670 True 3067.0 3807 97.1340 1 3645 2 chr2B.!!$R3 3644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 577 0.308684 AGTGCTGCATGTTGACAACG 59.691 50.000 13.46 1.62 0.00 4.10 F
1056 1058 0.251386 TCGTGGTCCTTCTGCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10 F
2255 2296 1.812571 AGTAAACAGCAATTGCCCTCG 59.187 47.619 26.45 14.88 43.38 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2072 1.197721 GAACGAAGTGACCAGCAATGG 59.802 52.381 0.0 0.0 45.00 3.16 R
3033 3823 1.935873 CTGAATGCGACCACTGGTATG 59.064 52.381 0.0 0.0 35.25 2.39 R
4017 4813 0.035630 AGAGTGCAGGATGGCTGTTC 60.036 55.000 0.0 0.0 35.86 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.790344 CATAAGAATATTGAGATGGGAGAACTT 57.210 33.333 0.00 0.00 0.00 2.66
98 99 4.026744 CTGGACCCTATGTTCTTCTCTCA 58.973 47.826 0.00 0.00 0.00 3.27
248 249 1.202371 GCACGAGATAACGGACATCCA 60.202 52.381 0.00 0.00 37.61 3.41
335 336 2.026641 GCTGAAAATGCTGATGGCCTA 58.973 47.619 3.32 0.00 40.92 3.93
338 339 4.279169 GCTGAAAATGCTGATGGCCTAATA 59.721 41.667 3.32 0.00 40.92 0.98
386 387 5.346181 AGAACTAGAAGGCTTGATACACC 57.654 43.478 3.46 0.00 0.00 4.16
412 413 3.881688 CAGGTTGGAAGATCATGGATGAC 59.118 47.826 0.00 0.00 40.03 3.06
534 536 5.704515 ACTTTTCTGATCTGAGTTGTGGATG 59.295 40.000 2.33 0.00 0.00 3.51
564 566 3.944650 TGAAACTCTTACAAAGTGCTGCA 59.055 39.130 0.00 0.00 0.00 4.41
567 569 3.480470 ACTCTTACAAAGTGCTGCATGT 58.520 40.909 5.27 9.17 0.00 3.21
575 577 0.308684 AGTGCTGCATGTTGACAACG 59.691 50.000 13.46 1.62 0.00 4.10
816 818 2.283145 AGCAAAGTTCAGGAGCATGT 57.717 45.000 0.00 0.00 0.00 3.21
820 822 3.144506 CAAAGTTCAGGAGCATGTGTCT 58.855 45.455 0.00 0.00 0.00 3.41
846 848 0.610232 AGCTAGCAAACAAGCCCCAG 60.610 55.000 18.83 0.00 39.64 4.45
1056 1058 0.251386 TCGTGGTCCTTCTGCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
1369 1407 3.369385 AGACACTGAGACGTACGTTTTG 58.631 45.455 23.70 14.28 0.00 2.44
1701 1742 2.203437 GGCGACAAAGGGGTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
1725 1766 6.258354 TCTTGTAAGTTCCTACATCCTACCA 58.742 40.000 0.00 0.00 31.96 3.25
1751 1792 2.435805 TGTGCAGTTCACCTCTCTTTCT 59.564 45.455 0.00 0.00 45.03 2.52
1798 1839 3.916359 TGGGTGTGTTGTTCTTGTCTA 57.084 42.857 0.00 0.00 0.00 2.59
1806 1847 7.391016 GTGTGTTGTTCTTGTCTAAAAATTGC 58.609 34.615 0.00 0.00 0.00 3.56
1807 1848 7.062839 GTGTGTTGTTCTTGTCTAAAAATTGCA 59.937 33.333 0.00 0.00 0.00 4.08
1844 1885 5.904362 ATTTCCTGAGTTTGCTGGTATTC 57.096 39.130 0.00 0.00 0.00 1.75
2168 2209 5.479724 GTCTGGTTTCCCTACTGTAGTTACT 59.520 44.000 13.42 0.00 0.00 2.24
2255 2296 1.812571 AGTAAACAGCAATTGCCCTCG 59.187 47.619 26.45 14.88 43.38 4.63
2417 3206 3.642705 GCATTGACCCTTTTCAGTTGTC 58.357 45.455 0.00 0.00 0.00 3.18
2597 3386 2.207924 AGACCGTGCCTTCGAGGTT 61.208 57.895 0.00 0.00 37.80 3.50
3033 3823 1.654317 CTCACTGGCTGAGCTGAATC 58.346 55.000 3.72 0.00 40.23 2.52
3045 3835 3.118629 TGAGCTGAATCATACCAGTGGTC 60.119 47.826 20.72 3.47 37.09 4.02
3081 3871 9.802039 TTTTAGTTATTTATCCTGTGGTGAAGT 57.198 29.630 0.00 0.00 0.00 3.01
3101 3891 6.826231 TGAAGTTTGTCTAACCAATTCACTGA 59.174 34.615 0.00 0.00 37.46 3.41
3111 3901 3.642848 ACCAATTCACTGAATGGCACTTT 59.357 39.130 4.99 0.00 32.14 2.66
3125 3915 7.284489 TGAATGGCACTTTTTGTAGTTCTACTT 59.716 33.333 10.65 0.00 0.00 2.24
3188 3978 1.002366 CGATTCTGGAGGAAGTTGCG 58.998 55.000 0.00 0.00 37.36 4.85
3236 4026 5.593095 TGTAGTCATAGCGAAGATGGTAGTT 59.407 40.000 0.00 0.00 0.00 2.24
3436 4226 1.872773 AGTGGAGGGGATCTCTTGAC 58.127 55.000 0.00 0.00 42.10 3.18
3465 4255 3.394836 AGAGGACGGCCAAGGAGC 61.395 66.667 11.69 0.00 36.29 4.70
3485 4275 7.170965 AGGAGCTCATCAGTTTTATCAAGAAA 58.829 34.615 17.19 0.00 0.00 2.52
3709 4500 8.578448 TTGAAATCTCAACATTACCATGATGA 57.422 30.769 0.00 0.00 39.28 2.92
3710 4501 8.578448 TGAAATCTCAACATTACCATGATGAA 57.422 30.769 0.00 0.00 40.59 2.57
3711 4502 8.461222 TGAAATCTCAACATTACCATGATGAAC 58.539 33.333 0.00 0.00 40.59 3.18
3712 4503 7.943079 AATCTCAACATTACCATGATGAACA 57.057 32.000 0.00 0.00 40.59 3.18
3713 4504 7.943079 ATCTCAACATTACCATGATGAACAA 57.057 32.000 0.00 0.00 40.59 2.83
3797 4588 5.782047 TCATGGTCCAAAGCATTTTAGTTG 58.218 37.500 0.00 0.00 41.59 3.16
3798 4589 5.304101 TCATGGTCCAAAGCATTTTAGTTGT 59.696 36.000 0.00 0.00 41.59 3.32
3799 4590 6.491745 TCATGGTCCAAAGCATTTTAGTTGTA 59.508 34.615 0.00 0.00 41.59 2.41
3800 4591 6.716934 TGGTCCAAAGCATTTTAGTTGTAA 57.283 33.333 0.00 0.00 35.03 2.41
3801 4592 7.296628 TGGTCCAAAGCATTTTAGTTGTAAT 57.703 32.000 0.00 0.00 35.03 1.89
3802 4593 7.151308 TGGTCCAAAGCATTTTAGTTGTAATG 58.849 34.615 0.00 0.00 35.03 1.90
3803 4594 6.589907 GGTCCAAAGCATTTTAGTTGTAATGG 59.410 38.462 0.00 0.00 35.03 3.16
3904 4700 0.965439 TTTTGCCCATTTGGTCGAGG 59.035 50.000 0.00 0.00 36.04 4.63
3911 4707 3.832527 CCCATTTGGTCGAGGGAATAAT 58.167 45.455 0.00 0.00 44.30 1.28
3912 4708 3.569701 CCCATTTGGTCGAGGGAATAATG 59.430 47.826 0.00 0.00 44.30 1.90
3913 4709 4.460263 CCATTTGGTCGAGGGAATAATGA 58.540 43.478 0.00 0.00 0.00 2.57
3914 4710 5.072741 CCATTTGGTCGAGGGAATAATGAT 58.927 41.667 0.00 0.00 0.00 2.45
3916 4712 6.714810 CCATTTGGTCGAGGGAATAATGATAA 59.285 38.462 0.00 0.00 0.00 1.75
3917 4713 7.394359 CCATTTGGTCGAGGGAATAATGATAAT 59.606 37.037 0.00 0.00 0.00 1.28
3918 4714 9.448438 CATTTGGTCGAGGGAATAATGATAATA 57.552 33.333 0.00 0.00 0.00 0.98
3920 4716 9.854668 TTTGGTCGAGGGAATAATGATAATAAA 57.145 29.630 0.00 0.00 0.00 1.40
3922 4718 9.502091 TGGTCGAGGGAATAATGATAATAAAAG 57.498 33.333 0.00 0.00 0.00 2.27
3923 4719 8.947115 GGTCGAGGGAATAATGATAATAAAAGG 58.053 37.037 0.00 0.00 0.00 3.11
3925 4721 8.665906 TCGAGGGAATAATGATAATAAAAGGGT 58.334 33.333 0.00 0.00 0.00 4.34
3943 4739 8.887036 AAAAGGGTTTACATGAAGTTCATTTC 57.113 30.769 15.85 5.12 34.28 2.17
3947 4743 8.143835 AGGGTTTACATGAAGTTCATTTCAAAG 58.856 33.333 15.85 6.37 40.21 2.77
3950 4746 8.755018 GTTTACATGAAGTTCATTTCAAAGGTG 58.245 33.333 15.85 5.77 40.21 4.00
3952 4748 6.877236 ACATGAAGTTCATTTCAAAGGTGTT 58.123 32.000 15.85 0.00 40.21 3.32
3953 4749 7.330262 ACATGAAGTTCATTTCAAAGGTGTTT 58.670 30.769 15.85 0.00 40.21 2.83
3954 4750 8.474025 ACATGAAGTTCATTTCAAAGGTGTTTA 58.526 29.630 15.85 0.00 40.21 2.01
3958 4754 5.362430 AGTTCATTTCAAAGGTGTTTAGGCA 59.638 36.000 0.00 0.00 0.00 4.75
3959 4755 6.041979 AGTTCATTTCAAAGGTGTTTAGGCAT 59.958 34.615 0.00 0.00 0.00 4.40
3960 4756 6.024552 TCATTTCAAAGGTGTTTAGGCATC 57.975 37.500 0.00 0.00 0.00 3.91
3961 4757 5.538053 TCATTTCAAAGGTGTTTAGGCATCA 59.462 36.000 0.00 0.00 0.00 3.07
3962 4758 5.452078 TTTCAAAGGTGTTTAGGCATCAG 57.548 39.130 0.00 0.00 0.00 2.90
3963 4759 4.365514 TCAAAGGTGTTTAGGCATCAGA 57.634 40.909 0.00 0.00 0.00 3.27
3965 4761 5.136828 TCAAAGGTGTTTAGGCATCAGAAA 58.863 37.500 0.00 0.00 0.00 2.52
3966 4762 5.774690 TCAAAGGTGTTTAGGCATCAGAAAT 59.225 36.000 0.00 0.00 0.00 2.17
3967 4763 5.904362 AAGGTGTTTAGGCATCAGAAATC 57.096 39.130 0.00 0.00 0.00 2.17
3968 4764 4.273318 AGGTGTTTAGGCATCAGAAATCC 58.727 43.478 0.00 0.00 0.00 3.01
3969 4765 4.016444 GGTGTTTAGGCATCAGAAATCCA 58.984 43.478 0.00 0.00 0.00 3.41
3972 4768 5.048083 GTGTTTAGGCATCAGAAATCCACAA 60.048 40.000 0.00 0.00 0.00 3.33
3973 4769 5.716228 TGTTTAGGCATCAGAAATCCACAAT 59.284 36.000 0.00 0.00 0.00 2.71
3974 4770 5.840243 TTAGGCATCAGAAATCCACAATG 57.160 39.130 0.00 0.00 0.00 2.82
3975 4771 2.429610 AGGCATCAGAAATCCACAATGC 59.570 45.455 0.00 0.00 38.95 3.56
3976 4772 2.166870 GGCATCAGAAATCCACAATGCA 59.833 45.455 7.36 0.00 40.89 3.96
3977 4773 3.368635 GGCATCAGAAATCCACAATGCAA 60.369 43.478 7.36 0.00 40.89 4.08
3978 4774 3.615496 GCATCAGAAATCCACAATGCAAC 59.385 43.478 0.00 0.00 39.36 4.17
3980 4776 2.228582 TCAGAAATCCACAATGCAACGG 59.771 45.455 0.00 0.00 0.00 4.44
3993 4789 1.094785 GCAACGGCATCTGTATGGTT 58.905 50.000 0.00 0.00 40.72 3.67
3995 4791 2.731968 GCAACGGCATCTGTATGGTTTG 60.732 50.000 0.00 0.00 40.72 2.93
3996 4792 2.487762 CAACGGCATCTGTATGGTTTGT 59.512 45.455 0.00 0.00 33.38 2.83
3997 4793 2.356135 ACGGCATCTGTATGGTTTGTC 58.644 47.619 0.00 0.00 33.38 3.18
3998 4794 2.290008 ACGGCATCTGTATGGTTTGTCA 60.290 45.455 0.00 0.00 33.38 3.58
3999 4795 2.095853 CGGCATCTGTATGGTTTGTCAC 59.904 50.000 0.00 0.00 33.38 3.67
4001 4797 4.513442 GGCATCTGTATGGTTTGTCACTA 58.487 43.478 0.00 0.00 33.38 2.74
4002 4798 4.941263 GGCATCTGTATGGTTTGTCACTAA 59.059 41.667 0.00 0.00 33.38 2.24
4003 4799 5.065218 GGCATCTGTATGGTTTGTCACTAAG 59.935 44.000 0.00 0.00 33.38 2.18
4004 4800 5.447818 GCATCTGTATGGTTTGTCACTAAGC 60.448 44.000 0.00 0.00 33.38 3.09
4006 4802 4.021807 TCTGTATGGTTTGTCACTAAGCGA 60.022 41.667 0.00 0.00 0.00 4.93
4010 4806 3.128349 TGGTTTGTCACTAAGCGAAGAC 58.872 45.455 0.00 0.00 0.00 3.01
4012 4808 3.184581 GGTTTGTCACTAAGCGAAGACTG 59.815 47.826 0.00 0.00 32.41 3.51
4013 4809 2.724977 TGTCACTAAGCGAAGACTGG 57.275 50.000 0.00 0.00 32.41 4.00
4016 4812 2.229302 GTCACTAAGCGAAGACTGGTCT 59.771 50.000 0.00 0.00 42.75 3.85
4017 4813 2.229062 TCACTAAGCGAAGACTGGTCTG 59.771 50.000 3.88 0.00 40.36 3.51
4018 4814 2.229062 CACTAAGCGAAGACTGGTCTGA 59.771 50.000 3.88 0.00 40.36 3.27
4019 4815 2.891580 ACTAAGCGAAGACTGGTCTGAA 59.108 45.455 3.88 0.00 40.36 3.02
4020 4816 2.156343 AAGCGAAGACTGGTCTGAAC 57.844 50.000 3.88 0.00 40.36 3.18
4021 4817 1.040646 AGCGAAGACTGGTCTGAACA 58.959 50.000 3.88 0.00 40.36 3.18
4022 4818 1.000283 AGCGAAGACTGGTCTGAACAG 60.000 52.381 20.71 20.71 40.36 3.16
4023 4819 1.423395 CGAAGACTGGTCTGAACAGC 58.577 55.000 22.11 14.53 40.36 4.40
4024 4820 1.802069 GAAGACTGGTCTGAACAGCC 58.198 55.000 22.11 11.97 40.36 4.85
4025 4821 1.070758 GAAGACTGGTCTGAACAGCCA 59.929 52.381 22.11 3.59 40.36 4.75
4026 4822 1.356124 AGACTGGTCTGAACAGCCAT 58.644 50.000 22.11 3.16 39.55 4.40
4027 4823 1.277557 AGACTGGTCTGAACAGCCATC 59.722 52.381 22.11 12.48 39.55 3.51
4028 4824 0.326264 ACTGGTCTGAACAGCCATCC 59.674 55.000 22.11 0.00 39.55 3.51
4029 4825 0.617413 CTGGTCTGAACAGCCATCCT 59.383 55.000 10.18 0.00 35.29 3.24
4031 4827 1.028868 GGTCTGAACAGCCATCCTGC 61.029 60.000 9.25 0.00 45.78 4.85
4032 4828 0.321919 GTCTGAACAGCCATCCTGCA 60.322 55.000 0.00 0.00 45.78 4.41
4033 4829 0.321919 TCTGAACAGCCATCCTGCAC 60.322 55.000 0.00 0.00 45.78 4.57
4034 4830 0.322277 CTGAACAGCCATCCTGCACT 60.322 55.000 0.00 0.00 45.78 4.40
4035 4831 0.321919 TGAACAGCCATCCTGCACTC 60.322 55.000 0.00 0.00 45.78 3.51
4036 4832 0.035630 GAACAGCCATCCTGCACTCT 60.036 55.000 0.00 0.00 45.78 3.24
4037 4833 0.403271 AACAGCCATCCTGCACTCTT 59.597 50.000 0.00 0.00 45.78 2.85
4038 4834 0.322277 ACAGCCATCCTGCACTCTTG 60.322 55.000 0.00 0.00 45.78 3.02
4039 4835 0.322277 CAGCCATCCTGCACTCTTGT 60.322 55.000 0.00 0.00 34.21 3.16
4040 4836 0.035630 AGCCATCCTGCACTCTTGTC 60.036 55.000 0.00 0.00 0.00 3.18
4041 4837 0.035630 GCCATCCTGCACTCTTGTCT 60.036 55.000 0.00 0.00 0.00 3.41
4042 4838 1.735386 CCATCCTGCACTCTTGTCTG 58.265 55.000 0.00 0.00 0.00 3.51
4043 4839 1.002888 CCATCCTGCACTCTTGTCTGT 59.997 52.381 0.00 0.00 0.00 3.41
4044 4840 2.234661 CCATCCTGCACTCTTGTCTGTA 59.765 50.000 0.00 0.00 0.00 2.74
4045 4841 3.118482 CCATCCTGCACTCTTGTCTGTAT 60.118 47.826 0.00 0.00 0.00 2.29
4046 4842 4.100035 CCATCCTGCACTCTTGTCTGTATA 59.900 45.833 0.00 0.00 0.00 1.47
4047 4843 4.720649 TCCTGCACTCTTGTCTGTATAC 57.279 45.455 0.00 0.00 0.00 1.47
4048 4844 3.447586 TCCTGCACTCTTGTCTGTATACC 59.552 47.826 0.00 0.00 0.00 2.73
4049 4845 3.430929 CCTGCACTCTTGTCTGTATACCC 60.431 52.174 0.00 0.00 0.00 3.69
4050 4846 3.441101 TGCACTCTTGTCTGTATACCCT 58.559 45.455 0.00 0.00 0.00 4.34
4051 4847 3.195610 TGCACTCTTGTCTGTATACCCTG 59.804 47.826 0.00 0.00 0.00 4.45
4052 4848 3.786635 CACTCTTGTCTGTATACCCTGC 58.213 50.000 0.00 0.00 0.00 4.85
4053 4849 3.195610 CACTCTTGTCTGTATACCCTGCA 59.804 47.826 0.00 0.00 0.00 4.41
4054 4850 3.449018 ACTCTTGTCTGTATACCCTGCAG 59.551 47.826 6.78 6.78 38.81 4.41
4055 4851 3.441101 TCTTGTCTGTATACCCTGCAGT 58.559 45.455 13.81 0.00 38.59 4.40
4056 4852 3.195610 TCTTGTCTGTATACCCTGCAGTG 59.804 47.826 13.81 3.15 38.59 3.66
4057 4853 2.536066 TGTCTGTATACCCTGCAGTGT 58.464 47.619 13.81 10.43 38.59 3.55
4058 4854 2.233676 TGTCTGTATACCCTGCAGTGTG 59.766 50.000 12.50 2.83 38.59 3.82
4059 4855 2.496070 GTCTGTATACCCTGCAGTGTGA 59.504 50.000 12.50 0.00 38.59 3.58
4060 4856 3.133003 GTCTGTATACCCTGCAGTGTGAT 59.867 47.826 12.50 4.61 38.59 3.06
4061 4857 4.341235 GTCTGTATACCCTGCAGTGTGATA 59.659 45.833 12.50 3.72 38.59 2.15
4062 4858 5.011125 GTCTGTATACCCTGCAGTGTGATAT 59.989 44.000 12.50 0.15 38.59 1.63
4063 4859 5.243954 TCTGTATACCCTGCAGTGTGATATC 59.756 44.000 12.50 0.00 38.59 1.63
4064 4860 4.283467 TGTATACCCTGCAGTGTGATATCC 59.717 45.833 12.50 0.00 0.00 2.59
4065 4861 1.885049 ACCCTGCAGTGTGATATCCT 58.115 50.000 13.81 0.00 0.00 3.24
4066 4862 1.765314 ACCCTGCAGTGTGATATCCTC 59.235 52.381 13.81 0.00 0.00 3.71
4067 4863 1.764723 CCCTGCAGTGTGATATCCTCA 59.235 52.381 13.81 0.00 0.00 3.86
4068 4864 2.224233 CCCTGCAGTGTGATATCCTCAG 60.224 54.545 13.81 1.47 33.51 3.35
4069 4865 2.481854 CTGCAGTGTGATATCCTCAGC 58.518 52.381 5.25 2.69 33.51 4.26
4070 4866 2.102757 CTGCAGTGTGATATCCTCAGCT 59.897 50.000 5.25 0.00 33.51 4.24
4071 4867 2.502947 TGCAGTGTGATATCCTCAGCTT 59.497 45.455 0.00 0.00 33.51 3.74
4072 4868 3.129871 GCAGTGTGATATCCTCAGCTTC 58.870 50.000 0.00 0.00 33.51 3.86
4073 4869 3.181467 GCAGTGTGATATCCTCAGCTTCT 60.181 47.826 0.00 0.00 33.51 2.85
4074 4870 4.682859 GCAGTGTGATATCCTCAGCTTCTT 60.683 45.833 0.00 0.00 33.51 2.52
4075 4871 4.809958 CAGTGTGATATCCTCAGCTTCTTG 59.190 45.833 0.00 0.00 33.51 3.02
4076 4872 3.559242 GTGTGATATCCTCAGCTTCTTGC 59.441 47.826 0.00 0.00 43.29 4.01
4087 4883 2.659731 GCTTCTTGCGTGATAGATGC 57.340 50.000 0.00 0.00 35.36 3.91
4088 4884 1.935873 GCTTCTTGCGTGATAGATGCA 59.064 47.619 0.00 0.00 45.27 3.96
4089 4885 2.286067 GCTTCTTGCGTGATAGATGCAC 60.286 50.000 0.00 0.00 46.65 4.57
4090 4886 2.967599 TCTTGCGTGATAGATGCACT 57.032 45.000 0.00 0.00 46.65 4.40
4091 4887 3.251479 TCTTGCGTGATAGATGCACTT 57.749 42.857 0.00 0.00 46.65 3.16
4092 4888 2.931969 TCTTGCGTGATAGATGCACTTG 59.068 45.455 0.00 0.00 46.65 3.16
4093 4889 2.385013 TGCGTGATAGATGCACTTGT 57.615 45.000 0.00 0.00 41.93 3.16
4094 4890 3.518634 TGCGTGATAGATGCACTTGTA 57.481 42.857 0.00 0.00 41.93 2.41
4095 4891 3.855858 TGCGTGATAGATGCACTTGTAA 58.144 40.909 0.00 0.00 41.93 2.41
4096 4892 3.865164 TGCGTGATAGATGCACTTGTAAG 59.135 43.478 0.00 0.00 41.93 2.34
4097 4893 3.302740 GCGTGATAGATGCACTTGTAAGC 60.303 47.826 0.00 0.00 36.49 3.09
4098 4894 3.060940 CGTGATAGATGCACTTGTAAGCG 60.061 47.826 0.00 0.00 34.18 4.68
4099 4895 3.865745 GTGATAGATGCACTTGTAAGCGT 59.134 43.478 0.00 0.00 33.57 5.07
4100 4896 4.330074 GTGATAGATGCACTTGTAAGCGTT 59.670 41.667 0.00 0.00 33.57 4.84
4101 4897 4.329801 TGATAGATGCACTTGTAAGCGTTG 59.670 41.667 0.00 0.00 0.00 4.10
4102 4898 1.806542 AGATGCACTTGTAAGCGTTGG 59.193 47.619 0.00 0.00 0.00 3.77
4103 4899 1.804151 GATGCACTTGTAAGCGTTGGA 59.196 47.619 0.00 0.00 0.00 3.53
4104 4900 1.890876 TGCACTTGTAAGCGTTGGAT 58.109 45.000 0.00 0.00 0.00 3.41
4105 4901 2.226330 TGCACTTGTAAGCGTTGGATT 58.774 42.857 0.00 0.00 0.00 3.01
4106 4902 2.621055 TGCACTTGTAAGCGTTGGATTT 59.379 40.909 0.00 0.00 0.00 2.17
4107 4903 3.234386 GCACTTGTAAGCGTTGGATTTC 58.766 45.455 0.00 0.00 0.00 2.17
4108 4904 3.304391 GCACTTGTAAGCGTTGGATTTCA 60.304 43.478 0.00 0.00 0.00 2.69
4109 4905 4.219033 CACTTGTAAGCGTTGGATTTCAC 58.781 43.478 0.00 0.00 0.00 3.18
4110 4906 4.024048 CACTTGTAAGCGTTGGATTTCACT 60.024 41.667 0.00 0.00 0.00 3.41
4111 4907 4.024048 ACTTGTAAGCGTTGGATTTCACTG 60.024 41.667 0.00 0.00 0.00 3.66
4112 4908 3.734463 TGTAAGCGTTGGATTTCACTGA 58.266 40.909 0.00 0.00 0.00 3.41
4113 4909 3.745975 TGTAAGCGTTGGATTTCACTGAG 59.254 43.478 0.00 0.00 0.00 3.35
4114 4910 1.160137 AGCGTTGGATTTCACTGAGC 58.840 50.000 0.00 0.00 0.00 4.26
4115 4911 0.874390 GCGTTGGATTTCACTGAGCA 59.126 50.000 0.00 0.00 0.00 4.26
4116 4912 1.266718 GCGTTGGATTTCACTGAGCAA 59.733 47.619 0.00 0.00 0.00 3.91
4117 4913 2.666619 GCGTTGGATTTCACTGAGCAAG 60.667 50.000 0.00 0.00 0.00 4.01
4118 4914 2.095567 CGTTGGATTTCACTGAGCAAGG 60.096 50.000 0.00 0.00 0.00 3.61
4119 4915 2.205022 TGGATTTCACTGAGCAAGGG 57.795 50.000 0.00 0.00 0.00 3.95
4120 4916 0.813821 GGATTTCACTGAGCAAGGGC 59.186 55.000 0.00 0.00 41.61 5.19
4121 4917 1.538047 GATTTCACTGAGCAAGGGCA 58.462 50.000 0.00 0.00 44.61 5.36
4122 4918 1.200948 GATTTCACTGAGCAAGGGCAC 59.799 52.381 0.00 0.00 44.61 5.01
4269 5066 7.019774 TCAGAATTTTAAAGATGATCGCTGG 57.980 36.000 0.00 0.00 0.00 4.85
4284 5081 6.100004 TGATCGCTGGTTTTAAAAACAACAA 58.900 32.000 18.80 1.21 34.76 2.83
4285 5082 5.765072 TCGCTGGTTTTAAAAACAACAAC 57.235 34.783 18.80 8.54 34.76 3.32
4286 5083 5.227908 TCGCTGGTTTTAAAAACAACAACA 58.772 33.333 18.80 0.24 34.76 3.33
4287 5084 5.694910 TCGCTGGTTTTAAAAACAACAACAA 59.305 32.000 18.80 0.65 34.76 2.83
4288 5085 5.786086 CGCTGGTTTTAAAAACAACAACAAC 59.214 36.000 18.80 3.38 34.76 3.32
4289 5086 5.786086 GCTGGTTTTAAAAACAACAACAACG 59.214 36.000 18.80 6.67 34.76 4.10
4327 5124 9.418045 AGTTTCATGGATTTTACAAAATTACCG 57.582 29.630 1.69 0.00 38.64 4.02
4399 5197 6.471198 CAGAAACGGTAAAAAGACAGAAAACC 59.529 38.462 0.00 0.00 0.00 3.27
4400 5198 5.900865 AACGGTAAAAAGACAGAAAACCA 57.099 34.783 0.00 0.00 0.00 3.67
4401 5199 5.494632 ACGGTAAAAAGACAGAAAACCAG 57.505 39.130 0.00 0.00 0.00 4.00
4405 5203 6.403855 CGGTAAAAAGACAGAAAACCAGTGAA 60.404 38.462 0.00 0.00 0.00 3.18
4417 5215 9.203421 CAGAAAACCAGTGAAATAAAATAACCC 57.797 33.333 0.00 0.00 0.00 4.11
4421 5219 5.122711 ACCAGTGAAATAAAATAACCCGACG 59.877 40.000 0.00 0.00 0.00 5.12
4423 5221 5.352016 CAGTGAAATAAAATAACCCGACGGA 59.648 40.000 17.49 0.00 0.00 4.69
4429 5227 7.920160 AATAAAATAACCCGACGGAAAAGTA 57.080 32.000 17.49 0.00 0.00 2.24
4431 5229 5.806366 AAATAACCCGACGGAAAAGTATG 57.194 39.130 17.49 0.00 0.00 2.39
4500 5310 0.679960 GGGCTTGCAATTCCTACGGT 60.680 55.000 15.00 0.00 0.00 4.83
4501 5311 1.173913 GGCTTGCAATTCCTACGGTT 58.826 50.000 0.00 0.00 0.00 4.44
4502 5312 2.361789 GGCTTGCAATTCCTACGGTTA 58.638 47.619 0.00 0.00 0.00 2.85
4503 5313 2.096980 GGCTTGCAATTCCTACGGTTAC 59.903 50.000 0.00 0.00 0.00 2.50
4505 5315 2.012937 TGCAATTCCTACGGTTACGG 57.987 50.000 0.00 0.00 46.48 4.02
4506 5316 0.654160 GCAATTCCTACGGTTACGGC 59.346 55.000 0.00 0.00 46.48 5.68
4507 5317 2.008045 GCAATTCCTACGGTTACGGCA 61.008 52.381 0.00 0.00 46.48 5.69
4508 5318 1.662122 CAATTCCTACGGTTACGGCAC 59.338 52.381 0.00 0.00 46.48 5.01
4509 5319 1.188863 ATTCCTACGGTTACGGCACT 58.811 50.000 0.00 0.00 46.48 4.40
4510 5320 0.527565 TTCCTACGGTTACGGCACTC 59.472 55.000 0.00 0.00 46.48 3.51
4511 5321 0.322816 TCCTACGGTTACGGCACTCT 60.323 55.000 0.00 0.00 46.48 3.24
4512 5322 0.529378 CCTACGGTTACGGCACTCTT 59.471 55.000 0.00 0.00 46.48 2.85
4513 5323 1.745087 CCTACGGTTACGGCACTCTTA 59.255 52.381 0.00 0.00 46.48 2.10
4514 5324 2.478539 CCTACGGTTACGGCACTCTTAC 60.479 54.545 0.00 0.00 46.48 2.34
4515 5325 0.109597 ACGGTTACGGCACTCTTACG 60.110 55.000 0.00 0.00 46.48 3.18
4516 5326 0.799534 CGGTTACGGCACTCTTACGG 60.800 60.000 0.00 0.00 36.18 4.02
4517 5327 0.527565 GGTTACGGCACTCTTACGGA 59.472 55.000 0.00 0.00 0.00 4.69
4518 5328 1.067635 GGTTACGGCACTCTTACGGAA 60.068 52.381 0.00 0.00 0.00 4.30
4519 5329 2.610232 GGTTACGGCACTCTTACGGAAA 60.610 50.000 0.00 0.00 31.52 3.13
4520 5330 2.352503 TACGGCACTCTTACGGAAAC 57.647 50.000 0.00 0.00 0.00 2.78
4537 5347 3.844099 GGAAACGCTGCAACTAATTAACG 59.156 43.478 0.00 0.00 0.00 3.18
4538 5348 4.377635 GGAAACGCTGCAACTAATTAACGA 60.378 41.667 0.00 0.00 0.00 3.85
4539 5349 3.991605 ACGCTGCAACTAATTAACGAG 57.008 42.857 0.00 0.00 0.00 4.18
4540 5350 2.093783 ACGCTGCAACTAATTAACGAGC 59.906 45.455 0.00 0.00 0.00 5.03
4541 5351 2.694043 GCTGCAACTAATTAACGAGCG 58.306 47.619 0.00 0.00 0.00 5.03
4542 5352 2.694043 CTGCAACTAATTAACGAGCGC 58.306 47.619 0.00 0.00 0.00 5.92
4543 5353 2.343101 TGCAACTAATTAACGAGCGCT 58.657 42.857 11.27 11.27 0.00 5.92
4544 5354 2.347452 TGCAACTAATTAACGAGCGCTC 59.653 45.455 27.64 27.64 0.00 5.03
4545 5355 2.285660 GCAACTAATTAACGAGCGCTCC 60.286 50.000 30.66 13.79 0.00 4.70
4546 5356 3.187700 CAACTAATTAACGAGCGCTCCT 58.812 45.455 30.66 20.33 0.00 3.69
4547 5357 3.521947 ACTAATTAACGAGCGCTCCTT 57.478 42.857 30.66 26.03 0.00 3.36
4548 5358 3.445857 ACTAATTAACGAGCGCTCCTTC 58.554 45.455 30.66 8.16 0.00 3.46
4549 5359 1.278238 AATTAACGAGCGCTCCTTCG 58.722 50.000 30.66 22.24 0.00 3.79
4550 5360 0.527817 ATTAACGAGCGCTCCTTCGG 60.528 55.000 30.66 18.71 0.00 4.30
4551 5361 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
4560 5370 2.035155 TCCTTCGGGAGTCTCGCA 59.965 61.111 7.78 0.00 39.58 5.10
4561 5371 1.605451 TCCTTCGGGAGTCTCGCAA 60.605 57.895 7.78 2.36 39.58 4.85
4562 5372 1.446272 CCTTCGGGAGTCTCGCAAC 60.446 63.158 7.78 0.00 37.25 4.17
4563 5373 1.801913 CTTCGGGAGTCTCGCAACG 60.802 63.158 7.78 7.87 0.00 4.10
4564 5374 2.196382 CTTCGGGAGTCTCGCAACGA 62.196 60.000 7.78 9.86 0.00 3.85
4565 5375 1.592400 TTCGGGAGTCTCGCAACGAT 61.592 55.000 7.78 0.00 34.61 3.73
4566 5376 1.586564 CGGGAGTCTCGCAACGATC 60.587 63.158 16.37 0.00 34.61 3.69
4567 5377 1.511305 GGGAGTCTCGCAACGATCA 59.489 57.895 11.84 0.00 34.61 2.92
4568 5378 0.526524 GGGAGTCTCGCAACGATCAG 60.527 60.000 11.84 0.00 34.61 2.90
4569 5379 1.142778 GGAGTCTCGCAACGATCAGC 61.143 60.000 0.00 0.00 34.61 4.26
4579 5389 3.084579 CGATCAGCGTCACTTGGC 58.915 61.111 0.00 0.00 34.64 4.52
4586 5396 4.012895 CGTCACTTGGCGCGCTTT 62.013 61.111 32.29 9.86 35.94 3.51
4587 5397 2.127232 GTCACTTGGCGCGCTTTC 60.127 61.111 32.29 15.45 0.00 2.62
4588 5398 2.590291 TCACTTGGCGCGCTTTCA 60.590 55.556 32.29 18.24 0.00 2.69
4589 5399 2.127118 CACTTGGCGCGCTTTCAG 60.127 61.111 32.29 21.96 0.00 3.02
4590 5400 4.030452 ACTTGGCGCGCTTTCAGC 62.030 61.111 32.29 13.79 38.02 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.746063 CAAACAACTTCCCAGCTGCA 59.254 50.000 8.66 0.00 0.00 4.41
86 87 6.531594 CAGCGTACATATTTGAGAGAAGAACA 59.468 38.462 0.00 0.00 0.00 3.18
98 99 3.199071 TCCCCAACTCAGCGTACATATTT 59.801 43.478 0.00 0.00 0.00 1.40
248 249 6.215023 AGGTATCATGTATCTCATTCCTGCAT 59.785 38.462 0.00 0.00 34.09 3.96
386 387 2.426024 CCATGATCTTCCAACCTGCAAG 59.574 50.000 0.00 0.00 0.00 4.01
412 413 0.953471 TTTCATCACCGGGTTCTGCG 60.953 55.000 6.32 0.00 0.00 5.18
534 536 7.402640 CACTTTGTAAGAGTTTCAGTCTTCAC 58.597 38.462 0.00 0.00 38.68 3.18
564 566 1.939934 CCACTGTCACGTTGTCAACAT 59.060 47.619 15.79 0.00 0.00 2.71
567 569 0.107897 AGCCACTGTCACGTTGTCAA 60.108 50.000 0.00 0.00 0.00 3.18
816 818 5.468540 TGTTTGCTAGCTTCTCTTAGACA 57.531 39.130 17.23 2.26 0.00 3.41
820 822 4.003648 GGCTTGTTTGCTAGCTTCTCTTA 58.996 43.478 17.23 0.00 41.90 2.10
846 848 2.104170 AGGGATCTCGAGGAAGTCAAC 58.896 52.381 13.56 3.84 0.00 3.18
918 920 7.736893 ACCAGGTTAATATAGGTGAAGATGAC 58.263 38.462 0.00 0.00 0.00 3.06
1223 1225 1.286553 ACACTGTTTTGGGACTTGGGA 59.713 47.619 0.00 0.00 0.00 4.37
1322 1324 5.948162 AGTGTTGCATCTTTCATGGTAAGAT 59.052 36.000 14.49 14.49 41.73 2.40
1369 1407 5.521010 CACACATAAATGGCATGGACAAATC 59.479 40.000 0.00 0.00 0.00 2.17
1701 1742 6.154021 GTGGTAGGATGTAGGAACTTACAAGA 59.846 42.308 1.30 0.00 41.75 3.02
1751 1792 9.964354 TTGATCTCCATTCTTCAAGAGATTAAA 57.036 29.630 3.12 0.02 44.18 1.52
1798 1839 2.158638 ACCCACCTGCAATGCAATTTTT 60.159 40.909 9.92 0.00 38.41 1.94
1806 1847 2.166254 GGAAATACACCCACCTGCAATG 59.834 50.000 0.00 0.00 0.00 2.82
1807 1848 2.042979 AGGAAATACACCCACCTGCAAT 59.957 45.455 0.00 0.00 0.00 3.56
1844 1885 5.277974 CCACGGCCATAAAATTCTCATACTG 60.278 44.000 2.24 0.00 0.00 2.74
2011 2052 6.610075 ATGGAAAGGTGCACATTAAGAAAT 57.390 33.333 18.21 0.00 0.00 2.17
2031 2072 1.197721 GAACGAAGTGACCAGCAATGG 59.802 52.381 0.00 0.00 45.00 3.16
2168 2209 2.049802 GTCGGGTCTGCGTCGAAA 60.050 61.111 0.00 0.00 34.62 3.46
2255 2296 5.998363 AGTACTGAAGGAACAAACAAGATCC 59.002 40.000 0.00 0.00 0.00 3.36
2597 3386 5.936372 TGACGAGAAGCTAGTAAGAGTAACA 59.064 40.000 0.00 0.00 0.00 2.41
3033 3823 1.935873 CTGAATGCGACCACTGGTATG 59.064 52.381 0.00 0.00 35.25 2.39
3081 3871 6.516527 GCCATTCAGTGAATTGGTTAGACAAA 60.517 38.462 23.66 0.00 33.48 2.83
3101 3891 7.284489 TCAAGTAGAACTACAAAAAGTGCCATT 59.716 33.333 13.34 0.00 38.48 3.16
3111 3901 8.364894 TGCATAGAACTCAAGTAGAACTACAAA 58.635 33.333 13.34 0.00 38.48 2.83
3125 3915 3.057969 CACCAAGGTGCATAGAACTCA 57.942 47.619 6.27 0.00 39.39 3.41
3188 3978 4.647654 TCGTCTTGCAACGAGACC 57.352 55.556 9.49 0.00 46.02 3.85
3261 4051 5.163426 TGTGACCTGAATCAGTTGCAATTTT 60.163 36.000 9.63 0.00 0.00 1.82
3436 4226 1.065928 GTCCTCTGCCCGTCATACG 59.934 63.158 0.00 0.00 42.11 3.06
3459 4249 6.715280 TCTTGATAAAACTGATGAGCTCCTT 58.285 36.000 12.15 0.00 0.00 3.36
3465 4255 9.403110 CCTGTTTTTCTTGATAAAACTGATGAG 57.597 33.333 15.20 4.90 42.29 2.90
3701 4492 2.133281 TGGAGGCTTGTTCATCATGG 57.867 50.000 0.00 0.00 0.00 3.66
3704 4495 3.831323 TCTTTTGGAGGCTTGTTCATCA 58.169 40.909 0.00 0.00 0.00 3.07
3705 4496 5.397142 AATCTTTTGGAGGCTTGTTCATC 57.603 39.130 0.00 0.00 0.00 2.92
3706 4497 5.565439 CGAAATCTTTTGGAGGCTTGTTCAT 60.565 40.000 0.00 0.00 0.00 2.57
3707 4498 4.261572 CGAAATCTTTTGGAGGCTTGTTCA 60.262 41.667 0.00 0.00 0.00 3.18
3708 4499 4.229876 CGAAATCTTTTGGAGGCTTGTTC 58.770 43.478 0.00 0.00 0.00 3.18
3709 4500 3.636764 ACGAAATCTTTTGGAGGCTTGTT 59.363 39.130 0.00 0.00 0.00 2.83
3710 4501 3.222603 ACGAAATCTTTTGGAGGCTTGT 58.777 40.909 0.00 0.00 0.00 3.16
3711 4502 3.923017 ACGAAATCTTTTGGAGGCTTG 57.077 42.857 0.00 0.00 0.00 4.01
3712 4503 3.636764 ACAACGAAATCTTTTGGAGGCTT 59.363 39.130 0.00 0.00 0.00 4.35
3713 4504 3.222603 ACAACGAAATCTTTTGGAGGCT 58.777 40.909 0.00 0.00 0.00 4.58
3767 4558 2.019984 GCTTTGGACCATGAAGCCTAG 58.980 52.381 16.98 2.39 39.79 3.02
3797 4588 6.584185 AACTTGACAACCATTACCCATTAC 57.416 37.500 0.00 0.00 0.00 1.89
3798 4589 6.778069 TCAAACTTGACAACCATTACCCATTA 59.222 34.615 0.00 0.00 31.01 1.90
3799 4590 5.600484 TCAAACTTGACAACCATTACCCATT 59.400 36.000 0.00 0.00 31.01 3.16
3800 4591 5.144100 TCAAACTTGACAACCATTACCCAT 58.856 37.500 0.00 0.00 31.01 4.00
3801 4592 4.537751 TCAAACTTGACAACCATTACCCA 58.462 39.130 0.00 0.00 31.01 4.51
3802 4593 5.523438 TTCAAACTTGACAACCATTACCC 57.477 39.130 0.00 0.00 36.83 3.69
3803 4594 9.191995 CTTTATTCAAACTTGACAACCATTACC 57.808 33.333 0.00 0.00 36.83 2.85
3896 4692 9.502091 CTTTTATTATCATTATTCCCTCGACCA 57.498 33.333 0.00 0.00 0.00 4.02
3917 4713 9.974980 GAAATGAACTTCATGTAAACCCTTTTA 57.025 29.630 4.99 0.00 37.15 1.52
3918 4714 8.482128 TGAAATGAACTTCATGTAAACCCTTTT 58.518 29.630 4.99 0.00 37.15 2.27
3919 4715 8.017418 TGAAATGAACTTCATGTAAACCCTTT 57.983 30.769 4.99 0.00 37.15 3.11
3920 4716 7.595819 TGAAATGAACTTCATGTAAACCCTT 57.404 32.000 4.99 0.00 37.15 3.95
3922 4718 7.384932 CCTTTGAAATGAACTTCATGTAAACCC 59.615 37.037 4.99 0.00 37.15 4.11
3923 4719 7.926018 ACCTTTGAAATGAACTTCATGTAAACC 59.074 33.333 4.99 0.00 37.15 3.27
3925 4721 8.474025 ACACCTTTGAAATGAACTTCATGTAAA 58.526 29.630 4.99 6.60 37.15 2.01
3927 4723 7.581213 ACACCTTTGAAATGAACTTCATGTA 57.419 32.000 4.99 0.00 37.15 2.29
3929 4725 7.775397 AAACACCTTTGAAATGAACTTCATG 57.225 32.000 4.99 0.00 37.15 3.07
3931 4727 7.488322 CCTAAACACCTTTGAAATGAACTTCA 58.512 34.615 0.00 0.00 33.48 3.02
3932 4728 6.420903 GCCTAAACACCTTTGAAATGAACTTC 59.579 38.462 0.00 0.00 0.00 3.01
3933 4729 6.127196 TGCCTAAACACCTTTGAAATGAACTT 60.127 34.615 0.00 0.00 0.00 2.66
3937 4733 5.538053 TGATGCCTAAACACCTTTGAAATGA 59.462 36.000 0.00 0.00 0.00 2.57
3939 4735 5.774690 TCTGATGCCTAAACACCTTTGAAAT 59.225 36.000 0.00 0.00 0.00 2.17
3940 4736 5.136828 TCTGATGCCTAAACACCTTTGAAA 58.863 37.500 0.00 0.00 0.00 2.69
3941 4737 4.724399 TCTGATGCCTAAACACCTTTGAA 58.276 39.130 0.00 0.00 0.00 2.69
3942 4738 4.365514 TCTGATGCCTAAACACCTTTGA 57.634 40.909 0.00 0.00 0.00 2.69
3943 4739 5.452078 TTTCTGATGCCTAAACACCTTTG 57.548 39.130 0.00 0.00 0.00 2.77
3947 4743 4.016444 TGGATTTCTGATGCCTAAACACC 58.984 43.478 0.00 0.00 0.00 4.16
3950 4746 5.643379 TTGTGGATTTCTGATGCCTAAAC 57.357 39.130 0.00 0.00 0.00 2.01
3952 4748 4.098349 GCATTGTGGATTTCTGATGCCTAA 59.902 41.667 0.00 0.00 35.16 2.69
3953 4749 3.633525 GCATTGTGGATTTCTGATGCCTA 59.366 43.478 0.00 0.00 35.16 3.93
3954 4750 2.429610 GCATTGTGGATTTCTGATGCCT 59.570 45.455 0.00 0.00 35.16 4.75
3958 4754 3.119388 CCGTTGCATTGTGGATTTCTGAT 60.119 43.478 0.00 0.00 0.00 2.90
3959 4755 2.228582 CCGTTGCATTGTGGATTTCTGA 59.771 45.455 0.00 0.00 0.00 3.27
3960 4756 2.598589 CCGTTGCATTGTGGATTTCTG 58.401 47.619 0.00 0.00 0.00 3.02
3961 4757 1.067635 GCCGTTGCATTGTGGATTTCT 60.068 47.619 0.00 0.00 37.47 2.52
3962 4758 1.336702 TGCCGTTGCATTGTGGATTTC 60.337 47.619 0.00 0.00 44.23 2.17
3963 4759 0.678395 TGCCGTTGCATTGTGGATTT 59.322 45.000 0.00 0.00 44.23 2.17
3965 4761 4.093966 TGCCGTTGCATTGTGGAT 57.906 50.000 0.00 0.00 44.23 3.41
3974 4770 1.094785 AACCATACAGATGCCGTTGC 58.905 50.000 0.00 0.00 38.26 4.17
3975 4771 2.487762 ACAAACCATACAGATGCCGTTG 59.512 45.455 0.00 0.00 0.00 4.10
3976 4772 2.747446 GACAAACCATACAGATGCCGTT 59.253 45.455 0.00 0.00 0.00 4.44
3977 4773 2.290008 TGACAAACCATACAGATGCCGT 60.290 45.455 0.00 0.00 0.00 5.68
3978 4774 2.095853 GTGACAAACCATACAGATGCCG 59.904 50.000 0.00 0.00 0.00 5.69
3980 4776 5.447818 GCTTAGTGACAAACCATACAGATGC 60.448 44.000 0.00 0.00 0.00 3.91
3983 4779 4.021807 TCGCTTAGTGACAAACCATACAGA 60.022 41.667 0.00 0.00 0.00 3.41
3984 4780 4.242475 TCGCTTAGTGACAAACCATACAG 58.758 43.478 0.00 0.00 0.00 2.74
3985 4781 4.260139 TCGCTTAGTGACAAACCATACA 57.740 40.909 0.00 0.00 0.00 2.29
3986 4782 4.927425 TCTTCGCTTAGTGACAAACCATAC 59.073 41.667 0.00 0.00 0.00 2.39
3987 4783 4.927425 GTCTTCGCTTAGTGACAAACCATA 59.073 41.667 0.00 0.00 0.00 2.74
3988 4784 3.746492 GTCTTCGCTTAGTGACAAACCAT 59.254 43.478 0.00 0.00 0.00 3.55
3990 4786 3.184581 CAGTCTTCGCTTAGTGACAAACC 59.815 47.826 0.00 0.00 32.41 3.27
3991 4787 3.184581 CCAGTCTTCGCTTAGTGACAAAC 59.815 47.826 0.00 0.00 32.41 2.93
3993 4789 2.364324 ACCAGTCTTCGCTTAGTGACAA 59.636 45.455 0.00 0.00 32.41 3.18
3995 4791 2.229302 AGACCAGTCTTCGCTTAGTGAC 59.771 50.000 0.00 0.00 36.31 3.67
3996 4792 2.229062 CAGACCAGTCTTCGCTTAGTGA 59.771 50.000 0.00 0.00 37.98 3.41
3997 4793 2.229062 TCAGACCAGTCTTCGCTTAGTG 59.771 50.000 0.00 0.00 37.98 2.74
3998 4794 2.515854 TCAGACCAGTCTTCGCTTAGT 58.484 47.619 0.00 0.00 37.98 2.24
3999 4795 3.246619 GTTCAGACCAGTCTTCGCTTAG 58.753 50.000 0.00 0.00 37.98 2.18
4001 4797 1.412710 TGTTCAGACCAGTCTTCGCTT 59.587 47.619 0.00 0.00 37.98 4.68
4002 4798 1.000283 CTGTTCAGACCAGTCTTCGCT 60.000 52.381 0.00 0.00 37.98 4.93
4003 4799 1.423395 CTGTTCAGACCAGTCTTCGC 58.577 55.000 0.00 0.00 37.98 4.70
4004 4800 1.423395 GCTGTTCAGACCAGTCTTCG 58.577 55.000 3.84 0.00 37.98 3.79
4006 4802 1.131638 TGGCTGTTCAGACCAGTCTT 58.868 50.000 0.82 0.00 37.98 3.01
4010 4806 0.617413 AGGATGGCTGTTCAGACCAG 59.383 55.000 16.30 0.00 36.78 4.00
4012 4808 1.028868 GCAGGATGGCTGTTCAGACC 61.029 60.000 3.05 5.05 35.86 3.85
4013 4809 0.321919 TGCAGGATGGCTGTTCAGAC 60.322 55.000 3.84 0.89 35.86 3.51
4016 4812 0.321919 GAGTGCAGGATGGCTGTTCA 60.322 55.000 0.00 0.00 35.86 3.18
4017 4813 0.035630 AGAGTGCAGGATGGCTGTTC 60.036 55.000 0.00 0.00 35.86 3.18
4018 4814 0.403271 AAGAGTGCAGGATGGCTGTT 59.597 50.000 0.00 0.00 35.86 3.16
4019 4815 0.322277 CAAGAGTGCAGGATGGCTGT 60.322 55.000 0.00 0.00 35.86 4.40
4020 4816 0.322277 ACAAGAGTGCAGGATGGCTG 60.322 55.000 0.00 0.00 35.86 4.85
4021 4817 0.035630 GACAAGAGTGCAGGATGGCT 60.036 55.000 0.00 0.00 35.86 4.75
4022 4818 0.035630 AGACAAGAGTGCAGGATGGC 60.036 55.000 0.00 0.00 35.86 4.40
4023 4819 1.002888 ACAGACAAGAGTGCAGGATGG 59.997 52.381 0.00 0.00 35.86 3.51
4024 4820 2.469274 ACAGACAAGAGTGCAGGATG 57.531 50.000 0.00 0.00 40.87 3.51
4025 4821 4.100189 GGTATACAGACAAGAGTGCAGGAT 59.900 45.833 5.01 0.00 0.00 3.24
4026 4822 3.447586 GGTATACAGACAAGAGTGCAGGA 59.552 47.826 5.01 0.00 0.00 3.86
4027 4823 3.430929 GGGTATACAGACAAGAGTGCAGG 60.431 52.174 5.01 0.00 0.00 4.85
4028 4824 3.449018 AGGGTATACAGACAAGAGTGCAG 59.551 47.826 5.01 0.00 0.00 4.41
4029 4825 3.195610 CAGGGTATACAGACAAGAGTGCA 59.804 47.826 5.01 0.00 0.00 4.57
4030 4826 3.786635 CAGGGTATACAGACAAGAGTGC 58.213 50.000 5.01 0.00 0.00 4.40
4031 4827 3.195610 TGCAGGGTATACAGACAAGAGTG 59.804 47.826 5.01 0.00 0.00 3.51
4032 4828 3.441101 TGCAGGGTATACAGACAAGAGT 58.559 45.455 5.01 0.00 0.00 3.24
4033 4829 3.449018 ACTGCAGGGTATACAGACAAGAG 59.551 47.826 19.93 0.00 35.38 2.85
4034 4830 3.195610 CACTGCAGGGTATACAGACAAGA 59.804 47.826 19.93 0.00 35.38 3.02
4035 4831 3.055819 ACACTGCAGGGTATACAGACAAG 60.056 47.826 22.99 0.00 35.38 3.16
4036 4832 2.903784 ACACTGCAGGGTATACAGACAA 59.096 45.455 22.99 0.00 35.38 3.18
4037 4833 2.233676 CACACTGCAGGGTATACAGACA 59.766 50.000 23.88 0.00 35.38 3.41
4038 4834 2.496070 TCACACTGCAGGGTATACAGAC 59.504 50.000 23.88 0.00 35.38 3.51
4039 4835 2.815158 TCACACTGCAGGGTATACAGA 58.185 47.619 23.88 11.95 35.38 3.41
4040 4836 3.827008 ATCACACTGCAGGGTATACAG 57.173 47.619 23.88 9.39 37.45 2.74
4041 4837 4.283467 GGATATCACACTGCAGGGTATACA 59.717 45.833 23.88 7.84 0.00 2.29
4042 4838 4.528596 AGGATATCACACTGCAGGGTATAC 59.471 45.833 23.88 13.14 0.00 1.47
4043 4839 4.752063 AGGATATCACACTGCAGGGTATA 58.248 43.478 23.88 18.74 0.00 1.47
4044 4840 3.580458 GAGGATATCACACTGCAGGGTAT 59.420 47.826 23.88 12.47 0.00 2.73
4045 4841 2.965831 GAGGATATCACACTGCAGGGTA 59.034 50.000 23.88 6.96 0.00 3.69
4046 4842 1.765314 GAGGATATCACACTGCAGGGT 59.235 52.381 18.08 18.08 0.00 4.34
4047 4843 1.764723 TGAGGATATCACACTGCAGGG 59.235 52.381 16.28 16.28 31.12 4.45
4048 4844 2.806019 GCTGAGGATATCACACTGCAGG 60.806 54.545 19.93 9.66 33.22 4.85
4049 4845 2.102757 AGCTGAGGATATCACACTGCAG 59.897 50.000 13.48 13.48 33.22 4.41
4050 4846 2.113807 AGCTGAGGATATCACACTGCA 58.886 47.619 18.66 0.00 33.22 4.41
4051 4847 2.906691 AGCTGAGGATATCACACTGC 57.093 50.000 4.83 10.08 33.22 4.40
4052 4848 4.669206 AGAAGCTGAGGATATCACACTG 57.331 45.455 4.83 1.14 33.22 3.66
4053 4849 4.682859 GCAAGAAGCTGAGGATATCACACT 60.683 45.833 4.83 0.00 41.15 3.55
4054 4850 3.559242 GCAAGAAGCTGAGGATATCACAC 59.441 47.826 4.83 0.00 41.15 3.82
4055 4851 3.739209 CGCAAGAAGCTGAGGATATCACA 60.739 47.826 4.83 3.57 42.61 3.58
4056 4852 2.799412 CGCAAGAAGCTGAGGATATCAC 59.201 50.000 4.83 0.00 42.61 3.06
4057 4853 2.432146 ACGCAAGAAGCTGAGGATATCA 59.568 45.455 4.83 0.00 42.61 2.15
4058 4854 2.799412 CACGCAAGAAGCTGAGGATATC 59.201 50.000 0.00 0.00 42.61 1.63
4059 4855 2.432146 TCACGCAAGAAGCTGAGGATAT 59.568 45.455 0.00 0.00 42.61 1.63
4060 4856 1.824852 TCACGCAAGAAGCTGAGGATA 59.175 47.619 0.00 0.00 42.61 2.59
4061 4857 0.610174 TCACGCAAGAAGCTGAGGAT 59.390 50.000 0.00 0.00 42.61 3.24
4062 4858 0.610174 ATCACGCAAGAAGCTGAGGA 59.390 50.000 0.00 0.00 42.61 3.71
4063 4859 2.159184 TCTATCACGCAAGAAGCTGAGG 60.159 50.000 0.00 0.00 42.61 3.86
4064 4860 3.156511 TCTATCACGCAAGAAGCTGAG 57.843 47.619 0.00 0.00 42.61 3.35
4065 4861 3.451526 CATCTATCACGCAAGAAGCTGA 58.548 45.455 0.00 0.00 42.61 4.26
4066 4862 2.033065 GCATCTATCACGCAAGAAGCTG 60.033 50.000 0.00 0.00 42.61 4.24
4067 4863 2.208431 GCATCTATCACGCAAGAAGCT 58.792 47.619 0.00 0.00 42.61 3.74
4068 4864 1.935873 TGCATCTATCACGCAAGAAGC 59.064 47.619 0.00 0.00 43.62 3.86
4069 4865 3.193263 AGTGCATCTATCACGCAAGAAG 58.807 45.455 0.00 0.00 39.31 2.85
4070 4866 3.251479 AGTGCATCTATCACGCAAGAA 57.749 42.857 0.00 0.00 39.31 2.52
4071 4867 2.931969 CAAGTGCATCTATCACGCAAGA 59.068 45.455 0.00 0.00 39.31 3.02
4072 4868 2.674852 ACAAGTGCATCTATCACGCAAG 59.325 45.455 0.00 0.00 39.31 4.01
4073 4869 2.698803 ACAAGTGCATCTATCACGCAA 58.301 42.857 0.00 0.00 39.31 4.85
4074 4870 2.385013 ACAAGTGCATCTATCACGCA 57.615 45.000 0.00 0.00 39.31 5.24
4075 4871 3.302740 GCTTACAAGTGCATCTATCACGC 60.303 47.826 0.00 0.00 39.31 5.34
4076 4872 3.060940 CGCTTACAAGTGCATCTATCACG 60.061 47.826 0.00 0.00 39.31 4.35
4077 4873 3.865745 ACGCTTACAAGTGCATCTATCAC 59.134 43.478 2.48 0.00 40.10 3.06
4078 4874 4.123497 ACGCTTACAAGTGCATCTATCA 57.877 40.909 2.48 0.00 40.10 2.15
4079 4875 4.260375 CCAACGCTTACAAGTGCATCTATC 60.260 45.833 2.48 0.00 40.10 2.08
4080 4876 3.623060 CCAACGCTTACAAGTGCATCTAT 59.377 43.478 2.48 0.00 40.10 1.98
4081 4877 3.000041 CCAACGCTTACAAGTGCATCTA 59.000 45.455 2.48 0.00 40.10 1.98
4082 4878 1.806542 CCAACGCTTACAAGTGCATCT 59.193 47.619 2.48 0.00 40.10 2.90
4083 4879 1.804151 TCCAACGCTTACAAGTGCATC 59.196 47.619 2.48 0.00 40.10 3.91
4084 4880 1.890876 TCCAACGCTTACAAGTGCAT 58.109 45.000 2.48 0.00 40.10 3.96
4085 4881 1.890876 ATCCAACGCTTACAAGTGCA 58.109 45.000 2.48 0.00 40.10 4.57
4086 4882 2.989422 AATCCAACGCTTACAAGTGC 57.011 45.000 2.48 0.00 40.10 4.40
4087 4883 4.024048 AGTGAAATCCAACGCTTACAAGTG 60.024 41.667 1.04 1.04 42.11 3.16
4088 4884 4.024048 CAGTGAAATCCAACGCTTACAAGT 60.024 41.667 0.00 0.00 0.00 3.16
4089 4885 4.213270 TCAGTGAAATCCAACGCTTACAAG 59.787 41.667 0.00 0.00 0.00 3.16
4090 4886 4.130857 TCAGTGAAATCCAACGCTTACAA 58.869 39.130 0.00 0.00 0.00 2.41
4091 4887 3.734463 TCAGTGAAATCCAACGCTTACA 58.266 40.909 0.00 0.00 0.00 2.41
4092 4888 3.424962 GCTCAGTGAAATCCAACGCTTAC 60.425 47.826 0.00 0.00 0.00 2.34
4093 4889 2.742053 GCTCAGTGAAATCCAACGCTTA 59.258 45.455 0.00 0.00 0.00 3.09
4094 4890 1.537202 GCTCAGTGAAATCCAACGCTT 59.463 47.619 0.00 0.00 0.00 4.68
4095 4891 1.160137 GCTCAGTGAAATCCAACGCT 58.840 50.000 0.00 0.00 0.00 5.07
4096 4892 0.874390 TGCTCAGTGAAATCCAACGC 59.126 50.000 0.00 0.00 0.00 4.84
4097 4893 2.095567 CCTTGCTCAGTGAAATCCAACG 60.096 50.000 0.00 0.00 0.00 4.10
4098 4894 2.229784 CCCTTGCTCAGTGAAATCCAAC 59.770 50.000 0.00 0.00 0.00 3.77
4099 4895 2.517959 CCCTTGCTCAGTGAAATCCAA 58.482 47.619 0.00 0.00 0.00 3.53
4100 4896 1.887956 GCCCTTGCTCAGTGAAATCCA 60.888 52.381 0.00 0.00 33.53 3.41
4101 4897 0.813821 GCCCTTGCTCAGTGAAATCC 59.186 55.000 0.00 0.00 33.53 3.01
4102 4898 1.200948 GTGCCCTTGCTCAGTGAAATC 59.799 52.381 0.00 0.00 38.71 2.17
4103 4899 1.251251 GTGCCCTTGCTCAGTGAAAT 58.749 50.000 0.00 0.00 38.71 2.17
4104 4900 0.823356 GGTGCCCTTGCTCAGTGAAA 60.823 55.000 0.00 0.00 38.71 2.69
4105 4901 1.228245 GGTGCCCTTGCTCAGTGAA 60.228 57.895 0.00 0.00 38.71 3.18
4106 4902 2.401699 CTGGTGCCCTTGCTCAGTGA 62.402 60.000 0.00 0.00 38.71 3.41
4107 4903 1.970114 CTGGTGCCCTTGCTCAGTG 60.970 63.158 0.00 0.00 38.71 3.66
4108 4904 2.433446 CTGGTGCCCTTGCTCAGT 59.567 61.111 0.00 0.00 38.71 3.41
4109 4905 2.360852 CCTGGTGCCCTTGCTCAG 60.361 66.667 0.00 0.00 38.38 3.35
4110 4906 2.296945 AAACCTGGTGCCCTTGCTCA 62.297 55.000 0.00 0.00 38.71 4.26
4111 4907 1.115326 AAAACCTGGTGCCCTTGCTC 61.115 55.000 0.00 0.00 38.71 4.26
4112 4908 0.690744 AAAAACCTGGTGCCCTTGCT 60.691 50.000 0.00 0.00 38.71 3.91
4113 4909 1.829456 AAAAACCTGGTGCCCTTGC 59.171 52.632 0.00 0.00 38.26 4.01
4265 5062 5.786086 CGTTGTTGTTGTTTTTAAAACCAGC 59.214 36.000 16.62 11.04 0.00 4.85
4269 5066 7.590607 TTTGCGTTGTTGTTGTTTTTAAAAC 57.409 28.000 13.06 13.06 0.00 2.43
4284 5081 8.707839 CCATGAAACTTTTAATATTTGCGTTGT 58.292 29.630 0.00 0.00 0.00 3.32
4285 5082 8.920665 TCCATGAAACTTTTAATATTTGCGTTG 58.079 29.630 0.00 0.00 0.00 4.10
4286 5083 9.651913 ATCCATGAAACTTTTAATATTTGCGTT 57.348 25.926 0.00 0.00 0.00 4.84
4287 5084 9.651913 AATCCATGAAACTTTTAATATTTGCGT 57.348 25.926 0.00 0.00 0.00 5.24
4371 5169 5.187687 TCTGTCTTTTTACCGTTTCTGGTT 58.812 37.500 0.00 0.00 43.56 3.67
4381 5179 6.445357 TCACTGGTTTTCTGTCTTTTTACC 57.555 37.500 0.00 0.00 0.00 2.85
4399 5197 5.352016 TCCGTCGGGTTATTTTATTTCACTG 59.648 40.000 12.29 0.00 33.83 3.66
4400 5198 5.490159 TCCGTCGGGTTATTTTATTTCACT 58.510 37.500 12.29 0.00 33.83 3.41
4401 5199 5.799681 TCCGTCGGGTTATTTTATTTCAC 57.200 39.130 12.29 0.00 33.83 3.18
4405 5203 6.822667 ACTTTTCCGTCGGGTTATTTTATT 57.177 33.333 12.29 0.00 33.83 1.40
4415 5213 2.389962 TTCCATACTTTTCCGTCGGG 57.610 50.000 12.29 0.00 0.00 5.14
4417 5215 4.024725 TGTGTTTTCCATACTTTTCCGTCG 60.025 41.667 0.00 0.00 0.00 5.12
4421 5219 7.065204 TGCTTTTTGTGTTTTCCATACTTTTCC 59.935 33.333 0.00 0.00 0.00 3.13
4423 5221 7.913674 TGCTTTTTGTGTTTTCCATACTTTT 57.086 28.000 0.00 0.00 0.00 2.27
4429 5227 6.998968 TTCATTGCTTTTTGTGTTTTCCAT 57.001 29.167 0.00 0.00 0.00 3.41
4431 5229 9.780413 TTATTTTCATTGCTTTTTGTGTTTTCC 57.220 25.926 0.00 0.00 0.00 3.13
4473 5283 1.880819 AATTGCAAGCCCTTCCTGCG 61.881 55.000 4.94 0.00 0.00 5.18
4500 5310 2.676076 GTTTCCGTAAGAGTGCCGTAA 58.324 47.619 0.00 0.00 43.02 3.18
4501 5311 1.401409 CGTTTCCGTAAGAGTGCCGTA 60.401 52.381 0.00 0.00 43.02 4.02
4502 5312 0.665369 CGTTTCCGTAAGAGTGCCGT 60.665 55.000 0.00 0.00 43.02 5.68
4503 5313 1.952266 GCGTTTCCGTAAGAGTGCCG 61.952 60.000 0.00 0.00 43.02 5.69
4504 5314 0.669625 AGCGTTTCCGTAAGAGTGCC 60.670 55.000 0.00 0.00 43.02 5.01
4505 5315 0.438830 CAGCGTTTCCGTAAGAGTGC 59.561 55.000 0.00 0.00 43.02 4.40
4506 5316 0.438830 GCAGCGTTTCCGTAAGAGTG 59.561 55.000 0.00 0.00 43.02 3.51
4507 5317 0.032952 TGCAGCGTTTCCGTAAGAGT 59.967 50.000 0.00 0.00 43.02 3.24
4508 5318 1.136336 GTTGCAGCGTTTCCGTAAGAG 60.136 52.381 0.00 0.00 43.02 2.85
4509 5319 0.863144 GTTGCAGCGTTTCCGTAAGA 59.137 50.000 0.00 0.00 43.02 2.10
4510 5320 0.865769 AGTTGCAGCGTTTCCGTAAG 59.134 50.000 0.00 0.00 36.15 2.34
4511 5321 2.151881 TAGTTGCAGCGTTTCCGTAA 57.848 45.000 0.00 0.00 36.15 3.18
4512 5322 2.151881 TTAGTTGCAGCGTTTCCGTA 57.848 45.000 0.00 0.00 36.15 4.02
4513 5323 1.519408 ATTAGTTGCAGCGTTTCCGT 58.481 45.000 0.00 0.00 36.15 4.69
4514 5324 2.611974 AATTAGTTGCAGCGTTTCCG 57.388 45.000 0.00 0.00 37.07 4.30
4515 5325 3.844099 CGTTAATTAGTTGCAGCGTTTCC 59.156 43.478 0.00 0.00 0.00 3.13
4516 5326 4.704457 TCGTTAATTAGTTGCAGCGTTTC 58.296 39.130 0.00 0.00 0.00 2.78
4517 5327 4.708601 CTCGTTAATTAGTTGCAGCGTTT 58.291 39.130 0.00 0.00 0.00 3.60
4518 5328 3.424433 GCTCGTTAATTAGTTGCAGCGTT 60.424 43.478 0.00 0.00 0.00 4.84
4519 5329 2.093783 GCTCGTTAATTAGTTGCAGCGT 59.906 45.455 0.00 0.00 0.00 5.07
4520 5330 2.694043 GCTCGTTAATTAGTTGCAGCG 58.306 47.619 0.00 0.00 0.00 5.18
4521 5331 2.694043 CGCTCGTTAATTAGTTGCAGC 58.306 47.619 0.00 0.00 0.00 5.25
4522 5332 2.348666 AGCGCTCGTTAATTAGTTGCAG 59.651 45.455 2.64 0.00 0.00 4.41
4523 5333 2.343101 AGCGCTCGTTAATTAGTTGCA 58.657 42.857 2.64 0.00 0.00 4.08
4524 5334 2.285660 GGAGCGCTCGTTAATTAGTTGC 60.286 50.000 29.81 8.45 0.00 4.17
4525 5335 3.187700 AGGAGCGCTCGTTAATTAGTTG 58.812 45.455 29.81 0.00 0.00 3.16
4526 5336 3.521947 AGGAGCGCTCGTTAATTAGTT 57.478 42.857 29.81 3.47 0.00 2.24
4527 5337 3.445857 GAAGGAGCGCTCGTTAATTAGT 58.554 45.455 36.96 19.55 37.75 2.24
4528 5338 2.468040 CGAAGGAGCGCTCGTTAATTAG 59.532 50.000 36.96 23.67 37.75 1.73
4529 5339 2.456989 CGAAGGAGCGCTCGTTAATTA 58.543 47.619 36.96 0.00 37.75 1.40
4530 5340 1.278238 CGAAGGAGCGCTCGTTAATT 58.722 50.000 36.96 21.28 37.75 1.40
4531 5341 2.959275 CGAAGGAGCGCTCGTTAAT 58.041 52.632 36.96 21.62 37.75 1.40
4532 5342 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
4545 5355 1.801913 CGTTGCGAGACTCCCGAAG 60.802 63.158 0.00 0.00 0.00 3.79
4546 5356 1.592400 ATCGTTGCGAGACTCCCGAA 61.592 55.000 0.00 0.00 39.91 4.30
4547 5357 1.989966 GATCGTTGCGAGACTCCCGA 61.990 60.000 0.00 0.65 39.91 5.14
4548 5358 1.586564 GATCGTTGCGAGACTCCCG 60.587 63.158 0.00 0.00 39.91 5.14
4549 5359 0.526524 CTGATCGTTGCGAGACTCCC 60.527 60.000 0.00 0.00 39.91 4.30
4550 5360 1.142778 GCTGATCGTTGCGAGACTCC 61.143 60.000 0.00 0.00 39.91 3.85
4551 5361 2.283254 GCTGATCGTTGCGAGACTC 58.717 57.895 0.00 0.00 39.91 3.36
4552 5362 4.485554 GCTGATCGTTGCGAGACT 57.514 55.556 0.00 0.00 39.91 3.24
4562 5372 2.792290 CGCCAAGTGACGCTGATCG 61.792 63.158 0.00 0.00 45.38 3.69
4563 5373 3.084579 CGCCAAGTGACGCTGATC 58.915 61.111 0.00 0.00 0.00 2.92
4569 5379 3.911155 GAAAGCGCGCCAAGTGACG 62.911 63.158 30.33 0.00 0.00 4.35
4570 5380 2.127232 GAAAGCGCGCCAAGTGAC 60.127 61.111 30.33 8.84 0.00 3.67
4571 5381 2.590291 TGAAAGCGCGCCAAGTGA 60.590 55.556 30.33 3.97 0.00 3.41
4572 5382 2.127118 CTGAAAGCGCGCCAAGTG 60.127 61.111 30.33 12.20 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.