Multiple sequence alignment - TraesCS2D01G304900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G304900 chr2D 100.000 6656 0 0 1 6656 390709109 390702454 0.000000e+00 12292.0
1 TraesCS2D01G304900 chr2D 92.946 241 16 1 3257 3497 61649998 61650237 3.820000e-92 350.0
2 TraesCS2D01G304900 chr2D 91.667 72 6 0 9 80 11675589 11675518 4.250000e-17 100.0
3 TraesCS2D01G304900 chr2D 88.608 79 9 0 3180 3258 506172032 506172110 5.490000e-16 97.1
4 TraesCS2D01G304900 chr2A 93.320 3009 141 25 3678 6656 527107196 527104218 0.000000e+00 4388.0
5 TraesCS2D01G304900 chr2A 91.698 2650 134 42 276 2878 527110161 527107551 0.000000e+00 3596.0
6 TraesCS2D01G304900 chr2A 97.125 313 7 2 2873 3184 527107503 527107192 1.640000e-145 527.0
7 TraesCS2D01G304900 chr2A 86.105 439 55 6 6221 6656 61477553 61477118 1.010000e-127 468.0
8 TraesCS2D01G304900 chr2A 81.466 232 32 10 6223 6449 585829201 585828976 5.300000e-41 180.0
9 TraesCS2D01G304900 chr2B 89.109 1919 96 46 224 2077 461741721 461739851 0.000000e+00 2281.0
10 TraesCS2D01G304900 chr2B 91.964 1207 59 16 5474 6656 461736386 461735194 0.000000e+00 1657.0
11 TraesCS2D01G304900 chr2B 90.274 1131 72 17 2075 3184 461739664 461738551 0.000000e+00 1445.0
12 TraesCS2D01G304900 chr2B 96.524 748 23 2 4717 5462 461737377 461736631 0.000000e+00 1234.0
13 TraesCS2D01G304900 chr2B 85.633 1051 107 29 3678 4718 461738555 461737539 0.000000e+00 1064.0
14 TraesCS2D01G304900 chr2B 90.000 80 6 1 1 80 736392821 736392744 1.180000e-17 102.0
15 TraesCS2D01G304900 chr6D 82.852 519 64 21 3176 3687 20088536 20089036 6.130000e-120 442.0
16 TraesCS2D01G304900 chr6D 90.667 75 7 0 6 80 456642656 456642730 4.250000e-17 100.0
17 TraesCS2D01G304900 chr5D 93.548 248 15 1 3254 3501 211982321 211982075 1.050000e-97 368.0
18 TraesCS2D01G304900 chr5D 89.744 78 8 0 3181 3258 314156821 314156744 4.250000e-17 100.0
19 TraesCS2D01G304900 chr3B 92.213 244 18 1 3256 3499 79956980 79956738 1.780000e-90 344.0
20 TraesCS2D01G304900 chr1A 92.213 244 18 1 3257 3500 34150591 34150833 1.780000e-90 344.0
21 TraesCS2D01G304900 chr1A 90.038 261 22 3 3257 3517 487563098 487562842 1.070000e-87 335.0
22 TraesCS2D01G304900 chr1A 93.590 78 5 0 3181 3258 98283982 98284059 4.220000e-22 117.0
23 TraesCS2D01G304900 chr1A 86.250 80 11 0 1 80 474772904 474772983 3.310000e-13 87.9
24 TraesCS2D01G304900 chr6B 90.980 255 21 2 3247 3501 523343886 523343634 6.390000e-90 342.0
25 TraesCS2D01G304900 chr6B 90.588 255 22 2 3256 3510 514689365 514689113 2.970000e-88 337.0
26 TraesCS2D01G304900 chr6B 77.154 267 48 8 6221 6485 716771554 716771299 6.960000e-30 143.0
27 TraesCS2D01G304900 chr6B 89.744 78 8 0 3181 3258 580987219 580987296 4.250000e-17 100.0
28 TraesCS2D01G304900 chr4A 90.698 258 20 4 3252 3507 459629400 459629145 2.300000e-89 340.0
29 TraesCS2D01G304900 chr4A 93.514 185 12 0 3497 3681 395037382 395037566 6.570000e-70 276.0
30 TraesCS2D01G304900 chr4A 93.048 187 13 0 3497 3683 438615336 438615522 2.360000e-69 274.0
31 TraesCS2D01G304900 chr4A 78.963 328 56 9 6221 6544 55374549 55374867 1.880000e-50 211.0
32 TraesCS2D01G304900 chr4A 93.590 78 5 0 3181 3258 78288826 78288749 4.220000e-22 117.0
33 TraesCS2D01G304900 chr4A 90.123 81 8 0 3178 3258 395037303 395037383 9.130000e-19 106.0
34 TraesCS2D01G304900 chr5A 94.595 185 10 0 3497 3681 529182655 529182839 3.040000e-73 287.0
35 TraesCS2D01G304900 chr5A 91.358 81 7 0 3178 3258 529182576 529182656 1.960000e-20 111.0
36 TraesCS2D01G304900 chr7B 93.548 186 12 0 3497 3682 397446498 397446683 1.830000e-70 278.0
37 TraesCS2D01G304900 chr7B 78.039 255 43 7 6393 6645 720218320 720218077 1.500000e-31 148.0
38 TraesCS2D01G304900 chr7B 89.655 58 5 1 24 80 10171833 10171890 9.260000e-09 73.1
39 TraesCS2D01G304900 chrUn 93.956 182 11 0 3497 3678 103495717 103495898 6.570000e-70 276.0
40 TraesCS2D01G304900 chr1D 93.514 185 11 1 3497 3681 437416277 437416460 2.360000e-69 274.0
41 TraesCS2D01G304900 chr1D 92.973 185 13 0 3497 3681 77335754 77335570 3.060000e-68 270.0
42 TraesCS2D01G304900 chr7A 91.795 195 14 2 3497 3690 418669595 418669402 3.060000e-68 270.0
43 TraesCS2D01G304900 chr7A 85.000 80 12 0 1 80 5499099 5499178 1.540000e-11 82.4
44 TraesCS2D01G304900 chr5B 77.667 403 78 10 6221 6619 67062102 67061708 1.120000e-57 235.0
45 TraesCS2D01G304900 chr7D 77.320 291 50 11 6360 6645 71963438 71963159 2.480000e-34 158.0
46 TraesCS2D01G304900 chr7D 90.244 82 6 1 1 80 427897073 427897154 9.130000e-19 106.0
47 TraesCS2D01G304900 chr3D 89.216 102 10 1 3181 3282 547439560 547439660 7.010000e-25 126.0
48 TraesCS2D01G304900 chr6A 95.385 65 3 0 4 68 20761638 20761702 3.280000e-18 104.0
49 TraesCS2D01G304900 chr4B 90.123 81 4 3 3180 3258 665919425 665919503 1.180000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G304900 chr2D 390702454 390709109 6655 True 12292.0 12292 100.000000 1 6656 1 chr2D.!!$R2 6655
1 TraesCS2D01G304900 chr2A 527104218 527110161 5943 True 2837.0 4388 94.047667 276 6656 3 chr2A.!!$R3 6380
2 TraesCS2D01G304900 chr2B 461735194 461741721 6527 True 1536.2 2281 90.700800 224 6656 5 chr2B.!!$R2 6432
3 TraesCS2D01G304900 chr6D 20088536 20089036 500 False 442.0 442 82.852000 3176 3687 1 chr6D.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.030773 GCTGGTAGATCGATCGCACA 59.969 55.0 25.01 20.15 0.00 4.57 F
563 575 0.108585 CCTCTCCCTCTCTCTCTCCG 59.891 65.0 0.00 0.00 0.00 4.63 F
1183 1255 0.323451 GCGGGGATTTCTTTCCAGGT 60.323 55.0 0.00 0.00 37.53 4.00 F
1197 1269 0.608640 CCAGGTCCAGGTGTAGTGTC 59.391 60.0 0.00 0.00 0.00 3.67 F
2705 3003 0.768221 ACTGGCTTCCTGTCTGGGAA 60.768 55.0 0.00 0.00 42.39 3.97 F
3189 3556 0.031010 ACATCCCAGGTACTCCCTCC 60.031 60.0 0.00 0.00 43.86 4.30 F
3484 3851 0.040425 GCGGGCGTGCTATATTTTGG 60.040 55.0 0.00 0.00 0.00 3.28 F
3638 4005 1.299541 AGTTGTGCAACGAAGACCAG 58.700 50.0 9.10 0.00 45.50 4.00 F
5463 6012 0.978907 TGAGAAGGTGAGCTCATGCA 59.021 50.0 21.47 9.09 42.74 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 1194 0.035598 TCGACGAAATGCTCCCCAAA 59.964 50.000 0.00 0.0 0.00 3.28 R
2330 2624 1.141019 GGCACCAGCAGCAATCATG 59.859 57.895 0.00 0.0 44.61 3.07 R
3100 3467 1.033746 AATCGCCATGACCAAGCTGG 61.034 55.000 0.00 0.0 45.02 4.85 R
3163 3530 2.625790 GAGTACCTGGGATGTAGAGCTG 59.374 54.545 0.00 0.0 0.00 4.24 R
4643 5027 0.907486 AGCCAAGCTCAGCATACAGA 59.093 50.000 0.00 0.0 30.62 3.41 R
4709 5093 5.292589 ACCGGAAACATAATATGTCGAACAC 59.707 40.000 9.46 0.0 44.07 3.32 R
5342 5891 0.524180 GAAAATGCGCACCTGCTAGC 60.524 55.000 14.90 8.1 39.32 3.42 R
5568 6355 1.577328 CGCTGACATCGCCTGGTTTT 61.577 55.000 0.00 0.0 0.00 2.43 R
6484 7309 0.037590 TTAGCCGTGTGGAAGCCAAT 59.962 50.000 0.00 0.0 37.49 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.911788 ATACATGGAGAGTGAATATTTGAAACT 57.088 29.630 0.00 0.00 0.00 2.66
55 56 8.641498 ACATGGAGAGTGAATATTTGAAACTT 57.359 30.769 0.00 0.00 0.00 2.66
56 57 8.517878 ACATGGAGAGTGAATATTTGAAACTTG 58.482 33.333 0.00 0.00 0.00 3.16
57 58 8.733458 CATGGAGAGTGAATATTTGAAACTTGA 58.267 33.333 0.00 0.00 0.00 3.02
58 59 8.868522 TGGAGAGTGAATATTTGAAACTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
59 60 9.300681 TGGAGAGTGAATATTTGAAACTTGATT 57.699 29.630 0.00 0.00 0.00 2.57
70 71 8.597662 ATTTGAAACTTGATTTGAAGACCATG 57.402 30.769 0.00 0.00 0.00 3.66
71 72 6.088016 TGAAACTTGATTTGAAGACCATGG 57.912 37.500 11.19 11.19 0.00 3.66
72 73 5.598005 TGAAACTTGATTTGAAGACCATGGT 59.402 36.000 19.89 19.89 0.00 3.55
73 74 6.098124 TGAAACTTGATTTGAAGACCATGGTT 59.902 34.615 20.85 3.15 0.00 3.67
74 75 6.484364 AACTTGATTTGAAGACCATGGTTT 57.516 33.333 20.85 11.21 0.00 3.27
75 76 6.484364 ACTTGATTTGAAGACCATGGTTTT 57.516 33.333 20.85 20.40 0.00 2.43
76 77 7.595819 ACTTGATTTGAAGACCATGGTTTTA 57.404 32.000 20.85 5.13 0.00 1.52
77 78 8.193953 ACTTGATTTGAAGACCATGGTTTTAT 57.806 30.769 20.85 10.16 0.00 1.40
78 79 8.650490 ACTTGATTTGAAGACCATGGTTTTATT 58.350 29.630 20.85 11.77 0.00 1.40
81 82 9.527157 TGATTTGAAGACCATGGTTTTATTAGA 57.473 29.630 20.85 5.64 0.00 2.10
83 84 7.391148 TTGAAGACCATGGTTTTATTAGAGC 57.609 36.000 20.85 6.34 0.00 4.09
84 85 5.584649 TGAAGACCATGGTTTTATTAGAGCG 59.415 40.000 20.85 0.00 0.00 5.03
85 86 5.099042 AGACCATGGTTTTATTAGAGCGT 57.901 39.130 20.85 0.00 0.00 5.07
86 87 5.497474 AGACCATGGTTTTATTAGAGCGTT 58.503 37.500 20.85 0.00 0.00 4.84
87 88 5.944007 AGACCATGGTTTTATTAGAGCGTTT 59.056 36.000 20.85 0.00 0.00 3.60
88 89 5.949735 ACCATGGTTTTATTAGAGCGTTTG 58.050 37.500 13.00 0.00 0.00 2.93
89 90 4.798387 CCATGGTTTTATTAGAGCGTTTGC 59.202 41.667 2.57 0.00 43.24 3.68
90 91 4.428615 TGGTTTTATTAGAGCGTTTGCC 57.571 40.909 0.00 0.00 44.31 4.52
91 92 3.821600 TGGTTTTATTAGAGCGTTTGCCA 59.178 39.130 0.00 0.00 44.31 4.92
92 93 4.461081 TGGTTTTATTAGAGCGTTTGCCAT 59.539 37.500 0.00 0.00 44.31 4.40
93 94 4.798387 GGTTTTATTAGAGCGTTTGCCATG 59.202 41.667 0.00 0.00 44.31 3.66
94 95 5.392595 GGTTTTATTAGAGCGTTTGCCATGA 60.393 40.000 0.00 0.00 44.31 3.07
95 96 6.265577 GTTTTATTAGAGCGTTTGCCATGAT 58.734 36.000 0.00 0.00 44.31 2.45
96 97 6.449635 TTTATTAGAGCGTTTGCCATGATT 57.550 33.333 0.00 0.00 44.31 2.57
97 98 4.989279 ATTAGAGCGTTTGCCATGATTT 57.011 36.364 0.00 0.00 44.31 2.17
98 99 4.782019 TTAGAGCGTTTGCCATGATTTT 57.218 36.364 0.00 0.00 44.31 1.82
99 100 5.888691 TTAGAGCGTTTGCCATGATTTTA 57.111 34.783 0.00 0.00 44.31 1.52
100 101 4.989279 AGAGCGTTTGCCATGATTTTAT 57.011 36.364 0.00 0.00 44.31 1.40
101 102 5.329035 AGAGCGTTTGCCATGATTTTATT 57.671 34.783 0.00 0.00 44.31 1.40
102 103 6.449635 AGAGCGTTTGCCATGATTTTATTA 57.550 33.333 0.00 0.00 44.31 0.98
103 104 6.498304 AGAGCGTTTGCCATGATTTTATTAG 58.502 36.000 0.00 0.00 44.31 1.73
104 105 5.043248 AGCGTTTGCCATGATTTTATTAGC 58.957 37.500 0.00 0.00 44.31 3.09
105 106 4.209080 GCGTTTGCCATGATTTTATTAGCC 59.791 41.667 0.00 0.00 33.98 3.93
106 107 4.744631 CGTTTGCCATGATTTTATTAGCCC 59.255 41.667 0.00 0.00 0.00 5.19
107 108 4.582701 TTGCCATGATTTTATTAGCCCG 57.417 40.909 0.00 0.00 0.00 6.13
108 109 3.561143 TGCCATGATTTTATTAGCCCGT 58.439 40.909 0.00 0.00 0.00 5.28
109 110 3.957497 TGCCATGATTTTATTAGCCCGTT 59.043 39.130 0.00 0.00 0.00 4.44
110 111 4.202101 TGCCATGATTTTATTAGCCCGTTG 60.202 41.667 0.00 0.00 0.00 4.10
111 112 4.298332 CCATGATTTTATTAGCCCGTTGC 58.702 43.478 0.00 0.00 41.71 4.17
112 113 4.202101 CCATGATTTTATTAGCCCGTTGCA 60.202 41.667 0.00 0.00 44.83 4.08
113 114 4.364415 TGATTTTATTAGCCCGTTGCAC 57.636 40.909 0.00 0.00 44.83 4.57
114 115 3.129638 TGATTTTATTAGCCCGTTGCACC 59.870 43.478 0.00 0.00 44.83 5.01
115 116 1.088306 TTTATTAGCCCGTTGCACCG 58.912 50.000 0.00 0.00 44.83 4.94
116 117 1.370587 TTATTAGCCCGTTGCACCGC 61.371 55.000 0.00 0.00 44.83 5.68
117 118 2.246761 TATTAGCCCGTTGCACCGCT 62.247 55.000 0.00 0.00 44.83 5.52
118 119 4.752879 TAGCCCGTTGCACCGCTC 62.753 66.667 0.00 0.00 44.83 5.03
128 129 2.252260 CACCGCTCGTGCCTTTTG 59.748 61.111 3.52 0.00 35.18 2.44
129 130 3.660111 ACCGCTCGTGCCTTTTGC 61.660 61.111 3.52 0.00 41.77 3.68
130 131 3.357079 CCGCTCGTGCCTTTTGCT 61.357 61.111 3.52 0.00 42.00 3.91
131 132 2.032634 CCGCTCGTGCCTTTTGCTA 61.033 57.895 3.52 0.00 42.00 3.49
132 133 1.421485 CGCTCGTGCCTTTTGCTAG 59.579 57.895 3.52 0.00 42.00 3.42
133 134 1.291877 CGCTCGTGCCTTTTGCTAGT 61.292 55.000 3.52 0.00 42.00 2.57
134 135 1.722011 GCTCGTGCCTTTTGCTAGTA 58.278 50.000 0.00 0.00 42.00 1.82
135 136 2.280628 GCTCGTGCCTTTTGCTAGTAT 58.719 47.619 0.00 0.00 42.00 2.12
136 137 3.454375 GCTCGTGCCTTTTGCTAGTATA 58.546 45.455 0.00 0.00 42.00 1.47
137 138 3.491267 GCTCGTGCCTTTTGCTAGTATAG 59.509 47.826 0.00 0.00 43.09 1.31
138 139 4.051922 CTCGTGCCTTTTGCTAGTATAGG 58.948 47.826 5.47 5.47 39.70 2.57
143 144 4.078639 CCTTTTGCTAGTATAGGCAGCT 57.921 45.455 0.00 0.00 39.70 4.24
144 145 3.812053 CCTTTTGCTAGTATAGGCAGCTG 59.188 47.826 10.11 10.11 39.70 4.24
145 146 3.475566 TTTGCTAGTATAGGCAGCTGG 57.524 47.619 17.12 0.00 39.70 4.85
146 147 2.088104 TGCTAGTATAGGCAGCTGGT 57.912 50.000 17.12 0.00 39.70 4.00
147 148 3.238788 TGCTAGTATAGGCAGCTGGTA 57.761 47.619 17.12 0.00 39.70 3.25
148 149 3.157881 TGCTAGTATAGGCAGCTGGTAG 58.842 50.000 17.12 0.00 39.70 3.18
149 150 3.181433 TGCTAGTATAGGCAGCTGGTAGA 60.181 47.826 17.12 0.00 39.70 2.59
150 151 4.020543 GCTAGTATAGGCAGCTGGTAGAT 58.979 47.826 17.12 0.00 39.70 1.98
151 152 4.097286 GCTAGTATAGGCAGCTGGTAGATC 59.903 50.000 17.12 0.00 39.70 2.75
152 153 3.085533 AGTATAGGCAGCTGGTAGATCG 58.914 50.000 17.12 0.00 0.00 3.69
153 154 2.294449 ATAGGCAGCTGGTAGATCGA 57.706 50.000 17.12 0.00 0.00 3.59
154 155 2.294449 TAGGCAGCTGGTAGATCGAT 57.706 50.000 17.12 0.00 0.00 3.59
155 156 0.965439 AGGCAGCTGGTAGATCGATC 59.035 55.000 17.91 17.91 0.00 3.69
156 157 0.387878 GGCAGCTGGTAGATCGATCG 60.388 60.000 19.33 9.36 0.00 3.69
157 158 1.006314 GCAGCTGGTAGATCGATCGC 61.006 60.000 19.33 15.64 0.00 4.58
158 159 0.312102 CAGCTGGTAGATCGATCGCA 59.688 55.000 19.33 9.06 0.00 5.10
159 160 0.312416 AGCTGGTAGATCGATCGCAC 59.688 55.000 19.33 19.26 0.00 5.34
160 161 0.030773 GCTGGTAGATCGATCGCACA 59.969 55.000 25.01 20.15 0.00 4.57
161 162 1.759994 CTGGTAGATCGATCGCACAC 58.240 55.000 25.01 18.53 0.00 3.82
162 163 0.384309 TGGTAGATCGATCGCACACC 59.616 55.000 25.01 24.17 0.00 4.16
163 164 0.384309 GGTAGATCGATCGCACACCA 59.616 55.000 25.01 0.00 0.00 4.17
164 165 1.600663 GGTAGATCGATCGCACACCAG 60.601 57.143 25.01 0.00 0.00 4.00
165 166 0.030773 TAGATCGATCGCACACCAGC 59.969 55.000 19.33 0.00 0.00 4.85
166 167 1.519234 GATCGATCGCACACCAGCA 60.519 57.895 11.09 0.00 0.00 4.41
167 168 1.079197 ATCGATCGCACACCAGCAA 60.079 52.632 11.09 0.00 0.00 3.91
168 169 0.673333 ATCGATCGCACACCAGCAAA 60.673 50.000 11.09 0.00 0.00 3.68
169 170 1.154413 CGATCGCACACCAGCAAAC 60.154 57.895 0.26 0.00 0.00 2.93
170 171 1.154413 GATCGCACACCAGCAAACG 60.154 57.895 0.00 0.00 0.00 3.60
171 172 3.254014 ATCGCACACCAGCAAACGC 62.254 57.895 0.00 0.00 0.00 4.84
172 173 4.249020 CGCACACCAGCAAACGCA 62.249 61.111 0.00 0.00 0.00 5.24
173 174 2.655044 GCACACCAGCAAACGCAC 60.655 61.111 0.00 0.00 0.00 5.34
174 175 2.352229 CACACCAGCAAACGCACG 60.352 61.111 0.00 0.00 0.00 5.34
175 176 3.582120 ACACCAGCAAACGCACGG 61.582 61.111 0.00 0.00 0.00 4.94
176 177 3.582120 CACCAGCAAACGCACGGT 61.582 61.111 0.00 0.00 37.80 4.83
177 178 3.582120 ACCAGCAAACGCACGGTG 61.582 61.111 3.15 3.15 36.43 4.94
178 179 4.326766 CCAGCAAACGCACGGTGG 62.327 66.667 10.60 2.76 43.73 4.61
179 180 3.582120 CAGCAAACGCACGGTGGT 61.582 61.111 10.60 3.41 0.00 4.16
180 181 2.826738 AGCAAACGCACGGTGGTT 60.827 55.556 10.60 9.39 0.00 3.67
181 182 2.353030 GCAAACGCACGGTGGTTC 60.353 61.111 10.60 0.00 0.00 3.62
182 183 2.330041 CAAACGCACGGTGGTTCC 59.670 61.111 10.60 0.00 0.00 3.62
183 184 2.903350 AAACGCACGGTGGTTCCC 60.903 61.111 10.60 0.00 0.00 3.97
184 185 3.409605 AAACGCACGGTGGTTCCCT 62.410 57.895 10.60 0.00 0.00 4.20
185 186 2.897172 AAACGCACGGTGGTTCCCTT 62.897 55.000 10.60 0.00 0.00 3.95
186 187 2.042404 AACGCACGGTGGTTCCCTTA 62.042 55.000 10.60 0.00 0.00 2.69
187 188 1.078708 CGCACGGTGGTTCCCTTAT 60.079 57.895 10.60 0.00 0.00 1.73
188 189 0.176219 CGCACGGTGGTTCCCTTATA 59.824 55.000 10.60 0.00 0.00 0.98
189 190 1.405797 CGCACGGTGGTTCCCTTATAA 60.406 52.381 10.60 0.00 0.00 0.98
190 191 2.713877 GCACGGTGGTTCCCTTATAAA 58.286 47.619 10.60 0.00 0.00 1.40
191 192 3.284617 GCACGGTGGTTCCCTTATAAAT 58.715 45.455 10.60 0.00 0.00 1.40
192 193 4.453751 GCACGGTGGTTCCCTTATAAATA 58.546 43.478 10.60 0.00 0.00 1.40
193 194 4.883006 GCACGGTGGTTCCCTTATAAATAA 59.117 41.667 10.60 0.00 0.00 1.40
194 195 5.357596 GCACGGTGGTTCCCTTATAAATAAA 59.642 40.000 10.60 0.00 0.00 1.40
195 196 6.040054 GCACGGTGGTTCCCTTATAAATAAAT 59.960 38.462 10.60 0.00 0.00 1.40
196 197 7.229106 GCACGGTGGTTCCCTTATAAATAAATA 59.771 37.037 10.60 0.00 0.00 1.40
197 198 9.122779 CACGGTGGTTCCCTTATAAATAAATAA 57.877 33.333 0.00 0.00 0.00 1.40
198 199 9.697990 ACGGTGGTTCCCTTATAAATAAATAAA 57.302 29.630 0.00 0.00 0.00 1.40
252 253 2.512885 CGTGGCACGGACGATATATAC 58.487 52.381 31.19 0.00 39.21 1.47
253 254 2.161012 CGTGGCACGGACGATATATACT 59.839 50.000 31.19 0.00 39.21 2.12
254 255 3.727079 CGTGGCACGGACGATATATACTC 60.727 52.174 31.19 0.00 39.21 2.59
258 259 4.413087 GCACGGACGATATATACTCCAAG 58.587 47.826 0.00 2.54 0.00 3.61
439 443 2.037367 TCCTCCTCCACCTCCACG 59.963 66.667 0.00 0.00 0.00 4.94
456 468 2.599281 GTCCCCAAACCCCCAACG 60.599 66.667 0.00 0.00 0.00 4.10
461 473 1.149627 CCAAACCCCCAACGTCTCA 59.850 57.895 0.00 0.00 0.00 3.27
479 491 1.078166 ACAGAGGCAGAGGCAGAGA 59.922 57.895 0.00 0.00 43.71 3.10
480 492 1.257055 ACAGAGGCAGAGGCAGAGAC 61.257 60.000 0.00 0.00 43.71 3.36
481 493 1.078166 AGAGGCAGAGGCAGAGACA 59.922 57.895 0.00 0.00 43.71 3.41
482 494 0.971959 AGAGGCAGAGGCAGAGACAG 60.972 60.000 0.00 0.00 43.71 3.51
483 495 0.969917 GAGGCAGAGGCAGAGACAGA 60.970 60.000 0.00 0.00 43.71 3.41
484 496 0.971959 AGGCAGAGGCAGAGACAGAG 60.972 60.000 0.00 0.00 43.71 3.35
490 502 1.153862 GGCAGAGACAGAGCAGACG 60.154 63.158 0.00 0.00 0.00 4.18
556 568 1.553651 GGAAACACCCTCTCCCTCTCT 60.554 57.143 0.00 0.00 0.00 3.10
557 569 1.828595 GAAACACCCTCTCCCTCTCTC 59.171 57.143 0.00 0.00 0.00 3.20
558 570 1.089123 AACACCCTCTCCCTCTCTCT 58.911 55.000 0.00 0.00 0.00 3.10
559 571 0.629058 ACACCCTCTCCCTCTCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
560 572 0.926293 CACCCTCTCCCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
561 573 1.133792 CACCCTCTCCCTCTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
562 574 0.478507 CCCTCTCCCTCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
563 575 0.108585 CCTCTCCCTCTCTCTCTCCG 59.891 65.000 0.00 0.00 0.00 4.63
564 576 0.837272 CTCTCCCTCTCTCTCTCCGT 59.163 60.000 0.00 0.00 0.00 4.69
565 577 0.834612 TCTCCCTCTCTCTCTCCGTC 59.165 60.000 0.00 0.00 0.00 4.79
566 578 0.837272 CTCCCTCTCTCTCTCCGTCT 59.163 60.000 0.00 0.00 0.00 4.18
567 579 0.834612 TCCCTCTCTCTCTCCGTCTC 59.165 60.000 0.00 0.00 0.00 3.36
590 602 2.025418 CGAAAACGGAGGTGGTCGG 61.025 63.158 0.00 0.00 32.52 4.79
896 950 1.299468 CTCGCCGCTGCTTAGTAGG 60.299 63.158 0.00 0.00 34.43 3.18
909 963 7.522399 CGCTGCTTAGTAGGAGTATAATCAGTT 60.522 40.741 2.18 0.00 41.52 3.16
1099 1153 0.895530 CCTCCTCGGTAAGTCAAGCA 59.104 55.000 0.00 0.00 0.00 3.91
1112 1166 3.254827 GTCAAGCAGACCGTTCTTTTC 57.745 47.619 0.00 0.00 41.56 2.29
1113 1167 2.872858 GTCAAGCAGACCGTTCTTTTCT 59.127 45.455 0.00 0.00 41.56 2.52
1121 1191 5.805486 GCAGACCGTTCTTTTCTTTTCTTTT 59.195 36.000 0.00 0.00 0.00 2.27
1122 1192 6.020599 GCAGACCGTTCTTTTCTTTTCTTTTC 60.021 38.462 0.00 0.00 0.00 2.29
1123 1193 7.251281 CAGACCGTTCTTTTCTTTTCTTTTCT 58.749 34.615 0.00 0.00 0.00 2.52
1124 1194 7.755373 CAGACCGTTCTTTTCTTTTCTTTTCTT 59.245 33.333 0.00 0.00 0.00 2.52
1125 1195 8.304596 AGACCGTTCTTTTCTTTTCTTTTCTTT 58.695 29.630 0.00 0.00 0.00 2.52
1126 1196 8.827177 ACCGTTCTTTTCTTTTCTTTTCTTTT 57.173 26.923 0.00 0.00 0.00 2.27
1147 1219 1.805945 GGAGCATTTCGTCGAGCGT 60.806 57.895 0.00 0.00 42.13 5.07
1183 1255 0.323451 GCGGGGATTTCTTTCCAGGT 60.323 55.000 0.00 0.00 37.53 4.00
1197 1269 0.608640 CCAGGTCCAGGTGTAGTGTC 59.391 60.000 0.00 0.00 0.00 3.67
1198 1270 1.633774 CAGGTCCAGGTGTAGTGTCT 58.366 55.000 0.00 0.00 0.00 3.41
1199 1271 2.556782 CCAGGTCCAGGTGTAGTGTCTA 60.557 54.545 0.00 0.00 0.00 2.59
1224 1302 3.296709 ATCGTGGTGCTGACGGGTC 62.297 63.158 0.00 0.00 37.43 4.46
1304 1383 4.154347 GGAGAGGACGGGCAGCTG 62.154 72.222 10.11 10.11 0.00 4.24
1442 1521 4.136978 CAGGTCTACAGCTGGGGT 57.863 61.111 19.93 0.00 43.38 4.95
1538 1617 3.145286 GGGGATAAAGATCAAGCAGCTC 58.855 50.000 0.00 0.00 33.27 4.09
1601 1680 1.481056 AAGTGCTCAGGTAAGCCGGT 61.481 55.000 1.90 0.00 41.77 5.28
1607 1686 2.803492 GCTCAGGTAAGCCGGTTATCAG 60.803 54.545 1.90 0.00 40.50 2.90
1614 1693 2.311124 AGCCGGTTATCAGCACTTAC 57.689 50.000 1.90 0.00 0.00 2.34
1674 1772 4.574828 TCAAAAAGTGGTGTTACTGAGAGC 59.425 41.667 0.00 0.00 0.00 4.09
1681 1779 4.335594 GTGGTGTTACTGAGAGCACTTTTT 59.664 41.667 0.00 0.00 44.15 1.94
1683 1781 4.574828 GGTGTTACTGAGAGCACTTTTTGA 59.425 41.667 0.00 0.00 32.90 2.69
1684 1782 5.239525 GGTGTTACTGAGAGCACTTTTTGAT 59.760 40.000 0.00 0.00 32.90 2.57
1743 1842 7.392494 TGATCTTCGAGTGACTGTTACTTAT 57.608 36.000 6.68 0.00 0.00 1.73
1929 2033 8.990163 TGGTACAAGGAAAAGAAAATCTAGTT 57.010 30.769 0.00 0.00 31.92 2.24
1952 2056 8.454106 AGTTTCATCTTCTTTGATATTTGTCCG 58.546 33.333 0.00 0.00 0.00 4.79
2066 2170 8.300286 AGTATTCGATATACAGACCAACATGAG 58.700 37.037 0.00 0.00 0.00 2.90
2254 2548 8.881051 ACAGCTTGTGTGGGAATGTAGACATT 62.881 42.308 7.61 7.61 42.86 2.71
2313 2607 3.445096 AGAGCTAATGGTCCAAAATGTGC 59.555 43.478 0.00 0.00 41.26 4.57
2330 2624 3.146066 TGTGCAGGGTATTTCTGTGAAC 58.854 45.455 0.00 0.00 34.89 3.18
2514 2808 7.701539 TGACTTGCTTAACATTTACATCCAT 57.298 32.000 0.00 0.00 0.00 3.41
2530 2824 2.298610 TCCATAGACGCACTCCTACTG 58.701 52.381 0.00 0.00 0.00 2.74
2629 2927 3.268334 AGCACCCAACATATCCCTGTTAA 59.732 43.478 0.00 0.00 37.25 2.01
2704 3002 1.152030 ACTGGCTTCCTGTCTGGGA 60.152 57.895 0.00 0.00 36.20 4.37
2705 3003 0.768221 ACTGGCTTCCTGTCTGGGAA 60.768 55.000 0.00 0.00 42.39 3.97
2908 3272 5.250982 TGTCTTCTACAGTTCCGACTATGA 58.749 41.667 0.00 0.00 33.90 2.15
2909 3273 5.886474 TGTCTTCTACAGTTCCGACTATGAT 59.114 40.000 0.00 0.00 33.90 2.45
2976 3342 8.736244 GTTTGTTCTTATGCTTCCAGGTTTATA 58.264 33.333 0.00 0.00 0.00 0.98
3100 3467 5.007332 CACTTACGGTTGGAGTAAATATGGC 59.993 44.000 0.00 0.00 34.18 4.40
3163 3530 7.065923 CCACATAAAGTAGAAGCCTTAAAGGAC 59.934 40.741 0.00 0.00 37.67 3.85
3188 3555 2.177233 TCTACATCCCAGGTACTCCCTC 59.823 54.545 0.00 0.00 43.86 4.30
3189 3556 0.031010 ACATCCCAGGTACTCCCTCC 60.031 60.000 0.00 0.00 43.86 4.30
3193 3560 0.691413 CCCAGGTACTCCCTCCTTCC 60.691 65.000 0.00 0.00 43.86 3.46
3195 3562 1.043673 CAGGTACTCCCTCCTTCCCG 61.044 65.000 0.00 0.00 43.86 5.14
3204 3571 4.593634 ACTCCCTCCTTCCCGAAATATAAG 59.406 45.833 0.00 0.00 0.00 1.73
3205 3572 4.563782 TCCCTCCTTCCCGAAATATAAGT 58.436 43.478 0.00 0.00 0.00 2.24
3208 3575 3.986277 TCCTTCCCGAAATATAAGTCGC 58.014 45.455 3.51 0.00 35.93 5.19
3210 3577 2.427232 TCCCGAAATATAAGTCGCGG 57.573 50.000 6.13 0.00 35.93 6.46
3214 3581 3.117794 CCGAAATATAAGTCGCGGTTGA 58.882 45.455 6.13 0.00 35.93 3.18
3215 3582 3.739300 CCGAAATATAAGTCGCGGTTGAT 59.261 43.478 6.13 0.00 35.93 2.57
3219 3586 6.685403 CGAAATATAAGTCGCGGTTGATTTTT 59.315 34.615 6.13 3.46 0.00 1.94
3239 3606 4.678509 TTTACGGTCTTTGATGCATGAC 57.321 40.909 2.46 4.99 0.00 3.06
3267 3634 9.656323 TTGACCACTAATATATACTCCTTCTGT 57.344 33.333 0.00 0.00 0.00 3.41
3268 3635 9.298250 TGACCACTAATATATACTCCTTCTGTC 57.702 37.037 0.00 0.00 0.00 3.51
3269 3636 8.653036 ACCACTAATATATACTCCTTCTGTCC 57.347 38.462 0.00 0.00 0.00 4.02
3270 3637 7.674772 ACCACTAATATATACTCCTTCTGTCCC 59.325 40.741 0.00 0.00 0.00 4.46
3271 3638 7.674348 CCACTAATATATACTCCTTCTGTCCCA 59.326 40.741 0.00 0.00 0.00 4.37
3272 3639 9.090103 CACTAATATATACTCCTTCTGTCCCAA 57.910 37.037 0.00 0.00 0.00 4.12
3273 3640 9.670442 ACTAATATATACTCCTTCTGTCCCAAA 57.330 33.333 0.00 0.00 0.00 3.28
3293 3660 3.814005 AATATAGTGCGTCCTCGGTTT 57.186 42.857 0.00 0.00 37.56 3.27
3295 3662 0.175073 ATAGTGCGTCCTCGGTTTCC 59.825 55.000 0.00 0.00 37.56 3.13
3320 3687 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
3329 3696 8.601845 ACTTTGACCATAAATTTAACCAAAGC 57.398 30.769 25.01 8.83 41.44 3.51
3338 3705 1.504359 TTAACCAAAGCGACCGACTG 58.496 50.000 0.00 0.00 0.00 3.51
3340 3707 3.777925 CCAAAGCGACCGACTGCG 61.778 66.667 0.00 0.00 35.87 5.18
3414 3781 3.915437 ATATAATTTTTGCTCCCGCCG 57.085 42.857 0.00 0.00 34.43 6.46
3417 3784 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
3430 3797 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
3439 3806 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
3454 3821 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
3458 3825 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
3459 3826 1.961793 TGGTCAAAGTTGAACCTCGG 58.038 50.000 6.62 0.00 44.20 4.63
3483 3850 0.384230 CGCGGGCGTGCTATATTTTG 60.384 55.000 4.64 0.00 34.35 2.44
3484 3851 0.040425 GCGGGCGTGCTATATTTTGG 60.040 55.000 0.00 0.00 0.00 3.28
3487 3854 2.286772 CGGGCGTGCTATATTTTGGAAC 60.287 50.000 0.00 0.00 0.00 3.62
3506 3873 4.344390 GGAACGGAGGGAGTATCAAAGTAT 59.656 45.833 0.00 0.00 36.25 2.12
3509 3876 7.256225 GGAACGGAGGGAGTATCAAAGTATATT 60.256 40.741 0.00 0.00 36.25 1.28
3510 3877 6.994221 ACGGAGGGAGTATCAAAGTATATTG 58.006 40.000 0.00 0.00 36.25 1.90
3533 3900 9.754382 ATTGATTGAACTTGTATAAATGGCATC 57.246 29.630 0.00 0.00 0.00 3.91
3543 3910 7.485418 TGTATAAATGGCATCGTCGTATTTT 57.515 32.000 0.00 0.00 0.00 1.82
3554 3921 6.504821 CATCGTCGTATTTTTCTTGCAAAAC 58.495 36.000 0.00 0.00 0.00 2.43
3556 3923 6.028368 TCGTCGTATTTTTCTTGCAAAACAA 58.972 32.000 0.00 0.00 36.62 2.83
3629 3996 7.434897 TGAAAATCATAGTCAAAGTTGTGCAAC 59.565 33.333 6.94 6.94 41.45 4.17
3636 4003 2.096819 TCAAAGTTGTGCAACGAAGACC 59.903 45.455 9.10 0.00 45.50 3.85
3638 4005 1.299541 AGTTGTGCAACGAAGACCAG 58.700 50.000 9.10 0.00 45.50 4.00
3643 4010 2.354510 TGTGCAACGAAGACCAGAAAAG 59.645 45.455 0.00 0.00 42.39 2.27
3644 4011 2.354821 GTGCAACGAAGACCAGAAAAGT 59.645 45.455 0.00 0.00 0.00 2.66
3645 4012 2.612212 TGCAACGAAGACCAGAAAAGTC 59.388 45.455 0.00 0.00 34.31 3.01
3646 4013 2.612212 GCAACGAAGACCAGAAAAGTCA 59.388 45.455 0.00 0.00 36.68 3.41
3649 4016 5.636837 CAACGAAGACCAGAAAAGTCAAAA 58.363 37.500 0.00 0.00 36.68 2.44
3667 4035 3.430333 AAACGCGCCTTATATTTTGGG 57.570 42.857 5.73 0.00 0.00 4.12
3670 4038 2.616842 ACGCGCCTTATATTTTGGGAAG 59.383 45.455 5.73 0.00 0.00 3.46
3672 4040 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
4122 4502 8.747538 AACTACACAAGGAAGTCTTTTATTGT 57.252 30.769 5.60 5.60 32.41 2.71
4143 4523 3.480668 GTGTGGTTTTGTTCACGATTTCG 59.519 43.478 0.00 0.00 46.33 3.46
4147 4527 5.286558 GTGGTTTTGTTCACGATTTCGAAAA 59.713 36.000 15.66 0.00 43.02 2.29
4184 4564 3.465832 TGAATCCCTAATGTGGTACCCA 58.534 45.455 10.07 7.51 0.00 4.51
4218 4598 9.762933 ATCAATTTTGTATATGCATTGGTTACC 57.237 29.630 3.54 0.00 0.00 2.85
4224 4604 1.863325 ATGCATTGGTTACCATGGCA 58.137 45.000 25.19 25.19 43.41 4.92
4315 4695 3.140325 ACATGACCAACCGAGTTTCAT 57.860 42.857 0.00 0.00 0.00 2.57
4559 4942 2.882927 TTATCCCTGTCGTCATTCGG 57.117 50.000 0.00 0.00 40.32 4.30
4591 4974 3.767131 TCACAATGCTACAGCTAGTGGTA 59.233 43.478 15.79 0.00 42.66 3.25
4709 5093 3.281727 ACTGGTGGTACTGGCATATTG 57.718 47.619 0.00 0.00 0.00 1.90
5170 5719 2.680339 GCACTCATTTGAACTAGCCCTC 59.320 50.000 0.00 0.00 0.00 4.30
5342 5891 3.034923 GCGCTCTAGCCGCAGATG 61.035 66.667 18.58 0.00 39.24 2.90
5354 5903 2.532256 GCAGATGCTAGCAGGTGCG 61.532 63.158 28.54 15.24 41.42 5.34
5417 5966 3.573967 CAGCTAAAATTTGGGTGTCACCT 59.426 43.478 21.40 2.47 38.64 4.00
5463 6012 0.978907 TGAGAAGGTGAGCTCATGCA 59.021 50.000 21.47 9.09 42.74 3.96
5464 6013 1.558294 TGAGAAGGTGAGCTCATGCAT 59.442 47.619 21.47 2.12 42.74 3.96
5465 6014 1.941294 GAGAAGGTGAGCTCATGCATG 59.059 52.381 21.47 21.07 42.74 4.06
5466 6015 1.558294 AGAAGGTGAGCTCATGCATGA 59.442 47.619 27.10 27.10 42.74 3.07
5483 6269 6.036577 TGCATGACTAGTAGACATGAAACA 57.963 37.500 32.91 22.85 46.32 2.83
5486 6272 6.201806 GCATGACTAGTAGACATGAAACATCC 59.798 42.308 32.91 17.23 46.32 3.51
5488 6274 7.101652 TGACTAGTAGACATGAAACATCCTC 57.898 40.000 3.59 0.00 0.00 3.71
5496 6282 4.338879 ACATGAAACATCCTCCTCTTTGG 58.661 43.478 0.00 0.00 37.10 3.28
5537 6323 8.598202 TTTTACATACCATAGGACTGTCACTA 57.402 34.615 10.38 8.95 0.00 2.74
5546 6332 7.038302 ACCATAGGACTGTCACTAAAGATTGAA 60.038 37.037 10.38 0.00 0.00 2.69
5568 6355 3.244284 ACCGTGTTAATCTGTAGGTTGCA 60.244 43.478 0.00 0.00 0.00 4.08
5652 6439 1.142185 AGAGAATGCGCGTGTCATCG 61.142 55.000 8.43 0.00 0.00 3.84
5729 6517 1.047002 CCTTGCCCATTGTTCACCAA 58.953 50.000 0.00 0.00 37.49 3.67
5919 6714 1.521681 GGTAGCTGCATCCGACACC 60.522 63.158 3.61 0.00 0.00 4.16
5950 6745 7.051623 TGGACGGTACAATCAATAAGCTATTT 58.948 34.615 0.00 0.00 0.00 1.40
6264 7087 3.810579 TGCCTTTGCATTAAAGCGG 57.189 47.368 0.00 0.00 44.23 5.52
6366 7191 1.609072 GAGAACTCAAAGCCACAACCC 59.391 52.381 0.00 0.00 0.00 4.11
6396 7221 7.469537 ACATAGAACTAGATGCCTATACACC 57.530 40.000 0.00 0.00 0.00 4.16
6440 7265 4.895668 TCAAACCGGTTGTAGGTATCTT 57.104 40.909 23.08 0.00 41.95 2.40
6444 7269 2.235402 ACCGGTTGTAGGTATCTTGTGG 59.765 50.000 0.00 0.00 40.80 4.17
6484 7309 2.547855 GCACCCATACGTCATATGCTCA 60.548 50.000 0.00 0.00 39.63 4.26
6494 7319 3.216800 GTCATATGCTCATTGGCTTCCA 58.783 45.455 0.00 0.00 0.00 3.53
6620 7446 9.391006 GACAGTTTCATATGACCCAAAGTAATA 57.609 33.333 4.48 0.00 0.00 0.98
6643 7469 1.136305 CACACCCCGAGTCGAATATGT 59.864 52.381 15.64 9.76 0.00 2.29
6646 7472 0.389391 CCCCGAGTCGAATATGTGCT 59.611 55.000 15.64 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.911788 AGTTTCAAATATTCACTCTCCATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
29 30 9.739276 AAGTTTCAAATATTCACTCTCCATGTA 57.261 29.630 0.00 0.00 0.00 2.29
30 31 8.517878 CAAGTTTCAAATATTCACTCTCCATGT 58.482 33.333 0.00 0.00 0.00 3.21
31 32 8.733458 TCAAGTTTCAAATATTCACTCTCCATG 58.267 33.333 0.00 0.00 0.00 3.66
32 33 8.868522 TCAAGTTTCAAATATTCACTCTCCAT 57.131 30.769 0.00 0.00 0.00 3.41
33 34 8.868522 ATCAAGTTTCAAATATTCACTCTCCA 57.131 30.769 0.00 0.00 0.00 3.86
44 45 9.695526 CATGGTCTTCAAATCAAGTTTCAAATA 57.304 29.630 0.00 0.00 0.00 1.40
45 46 7.658575 CCATGGTCTTCAAATCAAGTTTCAAAT 59.341 33.333 2.57 0.00 0.00 2.32
46 47 6.985645 CCATGGTCTTCAAATCAAGTTTCAAA 59.014 34.615 2.57 0.00 0.00 2.69
47 48 6.098124 ACCATGGTCTTCAAATCAAGTTTCAA 59.902 34.615 13.00 0.00 0.00 2.69
48 49 5.598005 ACCATGGTCTTCAAATCAAGTTTCA 59.402 36.000 13.00 0.00 0.00 2.69
49 50 6.089249 ACCATGGTCTTCAAATCAAGTTTC 57.911 37.500 13.00 0.00 0.00 2.78
50 51 6.484364 AACCATGGTCTTCAAATCAAGTTT 57.516 33.333 20.07 0.00 0.00 2.66
51 52 6.484364 AAACCATGGTCTTCAAATCAAGTT 57.516 33.333 20.07 0.23 0.00 2.66
52 53 6.484364 AAAACCATGGTCTTCAAATCAAGT 57.516 33.333 20.07 0.00 0.00 3.16
55 56 9.527157 TCTAATAAAACCATGGTCTTCAAATCA 57.473 29.630 20.07 0.00 0.00 2.57
57 58 8.470002 GCTCTAATAAAACCATGGTCTTCAAAT 58.530 33.333 20.07 0.00 0.00 2.32
58 59 7.361713 CGCTCTAATAAAACCATGGTCTTCAAA 60.362 37.037 20.07 0.00 0.00 2.69
59 60 6.093495 CGCTCTAATAAAACCATGGTCTTCAA 59.907 38.462 20.07 0.00 0.00 2.69
60 61 5.584649 CGCTCTAATAAAACCATGGTCTTCA 59.415 40.000 20.07 4.28 0.00 3.02
61 62 5.585047 ACGCTCTAATAAAACCATGGTCTTC 59.415 40.000 20.07 0.00 0.00 2.87
62 63 5.497474 ACGCTCTAATAAAACCATGGTCTT 58.503 37.500 20.07 14.13 0.00 3.01
63 64 5.099042 ACGCTCTAATAAAACCATGGTCT 57.901 39.130 20.07 11.32 0.00 3.85
64 65 5.813080 AACGCTCTAATAAAACCATGGTC 57.187 39.130 20.07 0.00 0.00 4.02
65 66 5.621329 GCAAACGCTCTAATAAAACCATGGT 60.621 40.000 13.00 13.00 0.00 3.55
66 67 4.798387 GCAAACGCTCTAATAAAACCATGG 59.202 41.667 11.19 11.19 0.00 3.66
67 68 4.798387 GGCAAACGCTCTAATAAAACCATG 59.202 41.667 0.00 0.00 0.00 3.66
68 69 4.461081 TGGCAAACGCTCTAATAAAACCAT 59.539 37.500 0.00 0.00 0.00 3.55
69 70 3.821600 TGGCAAACGCTCTAATAAAACCA 59.178 39.130 0.00 0.00 0.00 3.67
70 71 4.428615 TGGCAAACGCTCTAATAAAACC 57.571 40.909 0.00 0.00 0.00 3.27
71 72 5.636837 TCATGGCAAACGCTCTAATAAAAC 58.363 37.500 0.00 0.00 0.00 2.43
72 73 5.888691 TCATGGCAAACGCTCTAATAAAA 57.111 34.783 0.00 0.00 0.00 1.52
73 74 6.449635 AATCATGGCAAACGCTCTAATAAA 57.550 33.333 0.00 0.00 0.00 1.40
74 75 6.449635 AAATCATGGCAAACGCTCTAATAA 57.550 33.333 0.00 0.00 0.00 1.40
75 76 6.449635 AAAATCATGGCAAACGCTCTAATA 57.550 33.333 0.00 0.00 0.00 0.98
76 77 4.989279 AAATCATGGCAAACGCTCTAAT 57.011 36.364 0.00 0.00 0.00 1.73
77 78 4.782019 AAAATCATGGCAAACGCTCTAA 57.218 36.364 0.00 0.00 0.00 2.10
78 79 6.449635 AATAAAATCATGGCAAACGCTCTA 57.550 33.333 0.00 0.00 0.00 2.43
79 80 4.989279 ATAAAATCATGGCAAACGCTCT 57.011 36.364 0.00 0.00 0.00 4.09
80 81 5.173854 GCTAATAAAATCATGGCAAACGCTC 59.826 40.000 0.00 0.00 0.00 5.03
81 82 5.043248 GCTAATAAAATCATGGCAAACGCT 58.957 37.500 0.00 0.00 0.00 5.07
82 83 4.209080 GGCTAATAAAATCATGGCAAACGC 59.791 41.667 0.00 0.00 0.00 4.84
83 84 4.744631 GGGCTAATAAAATCATGGCAAACG 59.255 41.667 0.00 0.00 0.00 3.60
84 85 4.744631 CGGGCTAATAAAATCATGGCAAAC 59.255 41.667 0.00 0.00 0.00 2.93
85 86 4.404073 ACGGGCTAATAAAATCATGGCAAA 59.596 37.500 0.00 0.00 0.00 3.68
86 87 3.957497 ACGGGCTAATAAAATCATGGCAA 59.043 39.130 0.00 0.00 0.00 4.52
87 88 3.561143 ACGGGCTAATAAAATCATGGCA 58.439 40.909 0.00 0.00 0.00 4.92
88 89 4.298332 CAACGGGCTAATAAAATCATGGC 58.702 43.478 0.00 0.00 0.00 4.40
89 90 4.202101 TGCAACGGGCTAATAAAATCATGG 60.202 41.667 3.00 0.00 45.15 3.66
90 91 4.739716 GTGCAACGGGCTAATAAAATCATG 59.260 41.667 0.00 0.00 45.15 3.07
91 92 4.202111 GGTGCAACGGGCTAATAAAATCAT 60.202 41.667 0.00 0.00 45.15 2.45
92 93 3.129638 GGTGCAACGGGCTAATAAAATCA 59.870 43.478 0.00 0.00 45.15 2.57
93 94 3.702330 GGTGCAACGGGCTAATAAAATC 58.298 45.455 0.00 0.00 45.15 2.17
94 95 2.098443 CGGTGCAACGGGCTAATAAAAT 59.902 45.455 18.51 0.00 45.15 1.82
95 96 1.469308 CGGTGCAACGGGCTAATAAAA 59.531 47.619 18.51 0.00 45.15 1.52
96 97 1.088306 CGGTGCAACGGGCTAATAAA 58.912 50.000 18.51 0.00 45.15 1.40
97 98 1.370587 GCGGTGCAACGGGCTAATAA 61.371 55.000 27.78 0.00 45.15 1.40
98 99 1.816259 GCGGTGCAACGGGCTAATA 60.816 57.895 27.78 0.00 45.15 0.98
99 100 3.131478 GCGGTGCAACGGGCTAAT 61.131 61.111 27.78 0.00 45.15 1.73
100 101 4.323477 AGCGGTGCAACGGGCTAA 62.323 61.111 27.78 0.00 43.96 3.09
101 102 4.752879 GAGCGGTGCAACGGGCTA 62.753 66.667 27.78 0.00 45.42 3.93
112 113 3.660111 GCAAAAGGCACGAGCGGT 61.660 61.111 0.00 0.00 43.97 5.68
122 123 3.812053 CAGCTGCCTATACTAGCAAAAGG 59.188 47.826 0.00 0.00 38.82 3.11
123 124 3.812053 CCAGCTGCCTATACTAGCAAAAG 59.188 47.826 8.66 0.00 38.82 2.27
124 125 3.199946 ACCAGCTGCCTATACTAGCAAAA 59.800 43.478 8.66 0.00 38.82 2.44
125 126 2.771943 ACCAGCTGCCTATACTAGCAAA 59.228 45.455 8.66 0.00 38.82 3.68
126 127 2.398588 ACCAGCTGCCTATACTAGCAA 58.601 47.619 8.66 0.00 38.82 3.91
127 128 2.088104 ACCAGCTGCCTATACTAGCA 57.912 50.000 8.66 0.00 39.84 3.49
128 129 3.422796 TCTACCAGCTGCCTATACTAGC 58.577 50.000 8.66 0.00 37.71 3.42
129 130 4.334203 CGATCTACCAGCTGCCTATACTAG 59.666 50.000 8.66 0.00 0.00 2.57
130 131 4.019591 TCGATCTACCAGCTGCCTATACTA 60.020 45.833 8.66 0.00 0.00 1.82
131 132 3.085533 CGATCTACCAGCTGCCTATACT 58.914 50.000 8.66 0.00 0.00 2.12
132 133 3.082548 TCGATCTACCAGCTGCCTATAC 58.917 50.000 8.66 0.00 0.00 1.47
133 134 3.434940 TCGATCTACCAGCTGCCTATA 57.565 47.619 8.66 0.00 0.00 1.31
134 135 2.294449 TCGATCTACCAGCTGCCTAT 57.706 50.000 8.66 0.00 0.00 2.57
135 136 2.163509 GATCGATCTACCAGCTGCCTA 58.836 52.381 18.29 0.00 0.00 3.93
136 137 0.965439 GATCGATCTACCAGCTGCCT 59.035 55.000 18.29 0.00 0.00 4.75
137 138 0.387878 CGATCGATCTACCAGCTGCC 60.388 60.000 22.43 0.00 0.00 4.85
138 139 1.006314 GCGATCGATCTACCAGCTGC 61.006 60.000 21.57 12.11 0.00 5.25
139 140 0.312102 TGCGATCGATCTACCAGCTG 59.688 55.000 21.57 6.78 0.00 4.24
140 141 0.312416 GTGCGATCGATCTACCAGCT 59.688 55.000 21.57 0.00 0.00 4.24
141 142 0.030773 TGTGCGATCGATCTACCAGC 59.969 55.000 21.57 17.51 0.00 4.85
142 143 1.600663 GGTGTGCGATCGATCTACCAG 60.601 57.143 21.57 8.23 0.00 4.00
143 144 0.384309 GGTGTGCGATCGATCTACCA 59.616 55.000 21.57 13.64 0.00 3.25
144 145 0.384309 TGGTGTGCGATCGATCTACC 59.616 55.000 21.57 21.74 0.00 3.18
145 146 1.759994 CTGGTGTGCGATCGATCTAC 58.240 55.000 21.57 19.72 0.00 2.59
146 147 0.030773 GCTGGTGTGCGATCGATCTA 59.969 55.000 21.57 9.26 0.00 1.98
147 148 1.227089 GCTGGTGTGCGATCGATCT 60.227 57.895 21.57 0.00 0.00 2.75
148 149 1.083806 TTGCTGGTGTGCGATCGATC 61.084 55.000 21.57 15.68 35.36 3.69
149 150 0.673333 TTTGCTGGTGTGCGATCGAT 60.673 50.000 21.57 0.00 35.36 3.59
150 151 1.301322 TTTGCTGGTGTGCGATCGA 60.301 52.632 21.57 0.59 35.36 3.59
151 152 1.154413 GTTTGCTGGTGTGCGATCG 60.154 57.895 11.69 11.69 35.36 3.69
152 153 1.154413 CGTTTGCTGGTGTGCGATC 60.154 57.895 0.00 0.00 35.36 3.69
153 154 2.945984 CGTTTGCTGGTGTGCGAT 59.054 55.556 0.00 0.00 35.36 4.58
154 155 3.947841 GCGTTTGCTGGTGTGCGA 61.948 61.111 0.00 0.00 38.39 5.10
155 156 4.249020 TGCGTTTGCTGGTGTGCG 62.249 61.111 0.00 0.00 43.34 5.34
156 157 2.655044 GTGCGTTTGCTGGTGTGC 60.655 61.111 0.00 0.00 43.34 4.57
157 158 2.352229 CGTGCGTTTGCTGGTGTG 60.352 61.111 0.00 0.00 43.34 3.82
158 159 3.582120 CCGTGCGTTTGCTGGTGT 61.582 61.111 0.00 0.00 43.34 4.16
159 160 3.582120 ACCGTGCGTTTGCTGGTG 61.582 61.111 4.39 0.00 45.02 4.17
160 161 3.582120 CACCGTGCGTTTGCTGGT 61.582 61.111 0.03 0.03 46.80 4.00
161 162 4.326766 CCACCGTGCGTTTGCTGG 62.327 66.667 0.00 0.00 43.34 4.85
162 163 2.982038 GAACCACCGTGCGTTTGCTG 62.982 60.000 6.78 0.00 43.34 4.41
163 164 2.826738 AACCACCGTGCGTTTGCT 60.827 55.556 0.00 0.00 43.34 3.91
164 165 2.353030 GAACCACCGTGCGTTTGC 60.353 61.111 6.78 0.00 43.20 3.68
165 166 2.330041 GGAACCACCGTGCGTTTG 59.670 61.111 6.78 0.00 0.00 2.93
211 212 8.178964 GCCACGTTGTATTTTACTATTCATTCA 58.821 33.333 0.00 0.00 0.00 2.57
212 213 8.178964 TGCCACGTTGTATTTTACTATTCATTC 58.821 33.333 0.00 0.00 0.00 2.67
213 214 7.966204 GTGCCACGTTGTATTTTACTATTCATT 59.034 33.333 0.00 0.00 0.00 2.57
214 215 7.469260 GTGCCACGTTGTATTTTACTATTCAT 58.531 34.615 0.00 0.00 0.00 2.57
215 216 6.401260 CGTGCCACGTTGTATTTTACTATTCA 60.401 38.462 9.53 0.00 36.74 2.57
216 217 5.955496 CGTGCCACGTTGTATTTTACTATTC 59.045 40.000 9.53 0.00 36.74 1.75
217 218 5.163834 CCGTGCCACGTTGTATTTTACTATT 60.164 40.000 16.99 0.00 40.58 1.73
218 219 4.330620 CCGTGCCACGTTGTATTTTACTAT 59.669 41.667 16.99 0.00 40.58 2.12
219 220 3.679025 CCGTGCCACGTTGTATTTTACTA 59.321 43.478 16.99 0.00 40.58 1.82
220 221 2.481185 CCGTGCCACGTTGTATTTTACT 59.519 45.455 16.99 0.00 40.58 2.24
221 222 2.479656 TCCGTGCCACGTTGTATTTTAC 59.520 45.455 16.99 0.00 40.58 2.01
222 223 2.479656 GTCCGTGCCACGTTGTATTTTA 59.520 45.455 16.99 0.00 40.58 1.52
227 228 2.144833 ATCGTCCGTGCCACGTTGTA 62.145 55.000 16.99 0.00 40.58 2.41
232 233 2.161012 AGTATATATCGTCCGTGCCACG 59.839 50.000 10.95 10.95 42.11 4.94
439 443 2.599281 CGTTGGGGGTTTGGGGAC 60.599 66.667 0.00 0.00 0.00 4.46
456 468 1.217779 GCCTCTGCCTCTGTGAGAC 59.782 63.158 0.00 0.00 0.00 3.36
461 473 1.078166 TCTCTGCCTCTGCCTCTGT 59.922 57.895 0.00 0.00 36.33 3.41
479 491 4.363990 CCGGTGCGTCTGCTCTGT 62.364 66.667 0.00 0.00 43.34 3.41
558 570 4.808119 CGTTTTCGTTCGGAGACGGAGA 62.808 54.545 8.36 0.00 46.38 3.71
559 571 2.567154 CGTTTTCGTTCGGAGACGGAG 61.567 57.143 8.36 0.00 46.38 4.63
560 572 0.661187 CGTTTTCGTTCGGAGACGGA 60.661 55.000 8.36 2.43 46.29 4.69
561 573 1.771044 CGTTTTCGTTCGGAGACGG 59.229 57.895 8.36 0.00 46.29 4.79
567 579 1.562575 CCACCTCCGTTTTCGTTCGG 61.563 60.000 0.00 0.00 46.93 4.30
639 656 1.323271 TGTAGAAGCTCAGCTCGGGG 61.323 60.000 0.00 0.00 38.25 5.73
677 694 2.280119 GTGACGCCTCACAGTGCA 60.280 61.111 10.52 0.00 45.57 4.57
699 723 1.105457 AGCGTACGTACAAGCCCATA 58.895 50.000 24.50 0.00 0.00 2.74
881 933 1.030457 TACTCCTACTAAGCAGCGGC 58.970 55.000 0.00 0.00 41.61 6.53
882 934 5.183331 TGATTATACTCCTACTAAGCAGCGG 59.817 44.000 0.00 0.00 0.00 5.52
909 963 3.072330 TCTGGCGGCCAATAATTATCTGA 59.928 43.478 23.94 9.60 30.80 3.27
925 979 0.232303 GCGGACGAAAATATCTGGCG 59.768 55.000 0.00 0.00 0.00 5.69
1099 1153 7.392494 AGAAAAGAAAAGAAAAGAACGGTCT 57.608 32.000 0.00 0.00 34.72 3.85
1107 1161 7.201644 GCTCCCCAAAAGAAAAGAAAAGAAAAG 60.202 37.037 0.00 0.00 0.00 2.27
1109 1163 6.112734 GCTCCCCAAAAGAAAAGAAAAGAAA 58.887 36.000 0.00 0.00 0.00 2.52
1112 1166 5.022282 TGCTCCCCAAAAGAAAAGAAAAG 57.978 39.130 0.00 0.00 0.00 2.27
1113 1167 5.628797 ATGCTCCCCAAAAGAAAAGAAAA 57.371 34.783 0.00 0.00 0.00 2.29
1121 1191 2.159382 GACGAAATGCTCCCCAAAAGA 58.841 47.619 0.00 0.00 0.00 2.52
1122 1192 1.135689 CGACGAAATGCTCCCCAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
1123 1193 0.878416 CGACGAAATGCTCCCCAAAA 59.122 50.000 0.00 0.00 0.00 2.44
1124 1194 0.035598 TCGACGAAATGCTCCCCAAA 59.964 50.000 0.00 0.00 0.00 3.28
1125 1195 0.391130 CTCGACGAAATGCTCCCCAA 60.391 55.000 0.00 0.00 0.00 4.12
1126 1196 1.218047 CTCGACGAAATGCTCCCCA 59.782 57.895 0.00 0.00 0.00 4.96
1159 1231 0.958876 GAAAGAAATCCCCGCCGTGT 60.959 55.000 0.00 0.00 0.00 4.49
1162 1234 1.376609 CTGGAAAGAAATCCCCGCCG 61.377 60.000 0.00 0.00 38.82 6.46
1183 1255 3.154710 CACACTAGACACTACACCTGGA 58.845 50.000 0.00 0.00 0.00 3.86
1197 1269 0.532573 AGCACCACGATCCACACTAG 59.467 55.000 0.00 0.00 0.00 2.57
1198 1270 0.246360 CAGCACCACGATCCACACTA 59.754 55.000 0.00 0.00 0.00 2.74
1199 1271 1.004560 CAGCACCACGATCCACACT 60.005 57.895 0.00 0.00 0.00 3.55
1538 1617 3.479203 TGGCTATCCCCACAGGCG 61.479 66.667 0.00 0.00 40.06 5.52
1601 1680 5.340803 CGCAACTCTAGTAAGTGCTGATAA 58.659 41.667 4.33 0.00 0.00 1.75
1607 1686 1.656095 CTGCGCAACTCTAGTAAGTGC 59.344 52.381 13.05 11.78 38.97 4.40
1643 1725 3.096092 ACACCACTTTTTGAAAGGCAGA 58.904 40.909 5.52 0.00 0.00 4.26
1674 1772 9.941664 AGCGATCTTATCAATTATCAAAAAGTG 57.058 29.630 0.00 0.00 0.00 3.16
1681 1779 7.524065 CAATGCAGCGATCTTATCAATTATCA 58.476 34.615 0.00 0.00 0.00 2.15
1683 1781 6.072342 TGCAATGCAGCGATCTTATCAATTAT 60.072 34.615 2.72 0.00 37.31 1.28
1684 1782 5.239087 TGCAATGCAGCGATCTTATCAATTA 59.761 36.000 2.72 0.00 37.31 1.40
1743 1842 6.233434 ACAAGCATGTATCAGAAGTTCAGAA 58.767 36.000 5.50 0.00 38.24 3.02
1904 2003 8.990163 AACTAGATTTTCTTTTCCTTGTACCA 57.010 30.769 0.00 0.00 0.00 3.25
1905 2004 9.894783 GAAACTAGATTTTCTTTTCCTTGTACC 57.105 33.333 0.00 0.00 33.41 3.34
1929 2033 7.606073 TCACGGACAAATATCAAAGAAGATGAA 59.394 33.333 0.00 0.00 0.00 2.57
1952 2056 6.774354 ATGCAATCAAAAGATTGTTGTCAC 57.226 33.333 16.73 3.27 42.72 3.67
2066 2170 4.348168 ACAGGATCCCACCTACATTACATC 59.652 45.833 8.55 0.00 38.32 3.06
2230 2524 2.744202 GTCTACATTCCCACACAAGCTG 59.256 50.000 0.00 0.00 0.00 4.24
2232 2526 2.778299 TGTCTACATTCCCACACAAGC 58.222 47.619 0.00 0.00 0.00 4.01
2254 2548 7.658982 GCACATCATATTCATTAGAAGGTCAGA 59.341 37.037 0.00 0.00 37.14 3.27
2313 2607 6.558009 CAATCATGTTCACAGAAATACCCTG 58.442 40.000 0.00 0.00 37.64 4.45
2330 2624 1.141019 GGCACCAGCAGCAATCATG 59.859 57.895 0.00 0.00 44.61 3.07
2405 2699 2.148768 CCAAGACCCAAGTTTCCGTAC 58.851 52.381 0.00 0.00 0.00 3.67
2514 2808 1.676529 GCATCAGTAGGAGTGCGTCTA 59.323 52.381 0.00 0.00 0.00 2.59
2579 2877 6.620877 AATACCACTCCAGAACACAGATAA 57.379 37.500 0.00 0.00 0.00 1.75
2704 3002 8.660435 AGCATGAATATACATGGGTAGTACTTT 58.340 33.333 0.00 0.00 45.14 2.66
2705 3003 8.207350 AGCATGAATATACATGGGTAGTACTT 57.793 34.615 0.00 0.00 45.14 2.24
2976 3342 9.816354 ACAAAAGTGCAAGTAACAAGAATAAAT 57.184 25.926 0.00 0.00 0.00 1.40
3100 3467 1.033746 AATCGCCATGACCAAGCTGG 61.034 55.000 0.00 0.00 45.02 4.85
3163 3530 2.625790 GAGTACCTGGGATGTAGAGCTG 59.374 54.545 0.00 0.00 0.00 4.24
3193 3560 3.117794 TCAACCGCGACTTATATTTCGG 58.882 45.455 8.23 0.00 42.24 4.30
3195 3562 7.964545 AAAAATCAACCGCGACTTATATTTC 57.035 32.000 8.23 0.00 0.00 2.17
3219 3586 3.937814 AGTCATGCATCAAAGACCGTAA 58.062 40.909 10.40 0.00 0.00 3.18
3220 3587 3.610040 AGTCATGCATCAAAGACCGTA 57.390 42.857 10.40 0.00 0.00 4.02
3222 3589 3.189080 TCAAAGTCATGCATCAAAGACCG 59.811 43.478 10.40 2.15 0.00 4.79
3224 3591 4.022935 TGGTCAAAGTCATGCATCAAAGAC 60.023 41.667 0.00 0.88 0.00 3.01
3226 3593 4.022589 AGTGGTCAAAGTCATGCATCAAAG 60.023 41.667 0.00 0.00 0.00 2.77
3236 3603 9.656323 AGGAGTATATATTAGTGGTCAAAGTCA 57.344 33.333 0.00 0.00 0.00 3.41
3261 3628 4.876107 ACGCACTATATTTTGGGACAGAAG 59.124 41.667 7.16 0.00 42.39 2.85
3265 3632 3.199071 AGGACGCACTATATTTTGGGACA 59.801 43.478 7.16 0.00 0.00 4.02
3266 3633 3.805207 AGGACGCACTATATTTTGGGAC 58.195 45.455 7.16 2.22 0.00 4.46
3267 3634 3.491964 CGAGGACGCACTATATTTTGGGA 60.492 47.826 7.16 0.00 0.00 4.37
3268 3635 2.800544 CGAGGACGCACTATATTTTGGG 59.199 50.000 0.00 0.00 0.00 4.12
3269 3636 2.800544 CCGAGGACGCACTATATTTTGG 59.199 50.000 0.00 0.00 38.29 3.28
3270 3637 3.454375 ACCGAGGACGCACTATATTTTG 58.546 45.455 0.00 0.00 38.29 2.44
3271 3638 3.814005 ACCGAGGACGCACTATATTTT 57.186 42.857 0.00 0.00 38.29 1.82
3272 3639 3.814005 AACCGAGGACGCACTATATTT 57.186 42.857 0.00 0.00 38.29 1.40
3273 3640 3.492137 GGAAACCGAGGACGCACTATATT 60.492 47.826 0.00 0.00 38.29 1.28
3274 3641 2.035576 GGAAACCGAGGACGCACTATAT 59.964 50.000 0.00 0.00 38.29 0.86
3275 3642 1.406539 GGAAACCGAGGACGCACTATA 59.593 52.381 0.00 0.00 38.29 1.31
3276 3643 0.175073 GGAAACCGAGGACGCACTAT 59.825 55.000 0.00 0.00 38.29 2.12
3277 3644 1.588082 GGAAACCGAGGACGCACTA 59.412 57.895 0.00 0.00 38.29 2.74
3293 3660 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
3295 3662 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
3297 3664 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
3298 3665 8.708742 GGTTAAATTTATGGTCAAAGTTGAAGC 58.291 33.333 0.00 0.00 39.21 3.86
3320 3687 0.947180 GCAGTCGGTCGCTTTGGTTA 60.947 55.000 0.00 0.00 0.00 2.85
3414 3781 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
3417 3784 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
3425 3792 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
3430 3797 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
3439 3806 2.504367 CCGAGGTTCAACTTTGACCAT 58.496 47.619 11.01 0.00 36.83 3.55
3470 3837 3.247648 CCTCCGTTCCAAAATATAGCACG 59.752 47.826 0.00 0.00 0.00 5.34
3471 3838 3.564225 CCCTCCGTTCCAAAATATAGCAC 59.436 47.826 0.00 0.00 0.00 4.40
3472 3839 3.456644 TCCCTCCGTTCCAAAATATAGCA 59.543 43.478 0.00 0.00 0.00 3.49
3473 3840 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
3483 3850 2.500504 ACTTTGATACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
3484 3851 3.889520 ACTTTGATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
3487 3854 7.228314 TCAATATACTTTGATACTCCCTCCG 57.772 40.000 0.00 0.00 30.82 4.63
3509 3876 7.066887 ACGATGCCATTTATACAAGTTCAATCA 59.933 33.333 0.00 0.00 0.00 2.57
3510 3877 7.417612 ACGATGCCATTTATACAAGTTCAATC 58.582 34.615 0.00 0.00 0.00 2.67
3515 3882 4.873827 ACGACGATGCCATTTATACAAGTT 59.126 37.500 0.00 0.00 0.00 2.66
3518 3885 7.485418 AAATACGACGATGCCATTTATACAA 57.515 32.000 0.00 0.00 0.00 2.41
3530 3897 6.141527 TGTTTTGCAAGAAAAATACGACGATG 59.858 34.615 0.00 0.00 32.02 3.84
3532 3899 5.570344 TGTTTTGCAAGAAAAATACGACGA 58.430 33.333 0.00 0.00 32.02 4.20
3533 3900 5.858159 TGTTTTGCAAGAAAAATACGACG 57.142 34.783 0.00 0.00 32.02 5.12
3602 3969 7.660112 TGCACAACTTTGACTATGATTTTCAT 58.340 30.769 0.00 0.00 40.72 2.57
3610 3977 4.466567 TCGTTGCACAACTTTGACTATG 57.533 40.909 11.44 0.00 39.08 2.23
3622 3989 2.031258 TTTCTGGTCTTCGTTGCACA 57.969 45.000 0.00 0.00 0.00 4.57
3629 3996 4.271687 CGTTTTGACTTTTCTGGTCTTCG 58.728 43.478 0.00 0.00 35.04 3.79
3636 4003 1.120437 GGCGCGTTTTGACTTTTCTG 58.880 50.000 8.43 0.00 0.00 3.02
3638 4005 1.835121 AAGGCGCGTTTTGACTTTTC 58.165 45.000 10.00 0.00 0.00 2.29
3643 4010 4.264380 CCAAAATATAAGGCGCGTTTTGAC 59.736 41.667 21.55 0.00 40.41 3.18
3644 4011 4.416620 CCAAAATATAAGGCGCGTTTTGA 58.583 39.130 21.55 3.17 40.41 2.69
3645 4012 3.549873 CCCAAAATATAAGGCGCGTTTTG 59.450 43.478 21.55 17.17 38.70 2.44
3646 4013 3.444388 TCCCAAAATATAAGGCGCGTTTT 59.556 39.130 21.55 15.49 0.00 2.43
3649 4016 2.335316 TCCCAAAATATAAGGCGCGT 57.665 45.000 8.43 0.00 0.00 6.01
3667 4035 5.711506 GGTATTAGCTAGTACTCCCTCCTTC 59.288 48.000 21.55 3.04 0.00 3.46
3670 4038 4.995536 TGGTATTAGCTAGTACTCCCTCC 58.004 47.826 21.55 8.38 0.00 4.30
3672 4040 5.774179 TGTTGGTATTAGCTAGTACTCCCT 58.226 41.667 21.55 0.00 0.00 4.20
3734 4102 0.957395 CCTATGGCTATGGGCTTGCG 60.957 60.000 0.00 0.00 41.46 4.85
3761 4129 6.212388 CACTACATTGCCTCTAGATATCCCTT 59.788 42.308 0.00 0.00 0.00 3.95
3762 4130 5.719085 CACTACATTGCCTCTAGATATCCCT 59.281 44.000 0.00 0.00 0.00 4.20
3901 4270 4.080695 ACAGACCTCAATCAGCACATATGT 60.081 41.667 1.41 1.41 0.00 2.29
4051 4431 7.265673 TGACGGATAAAGAAAAGTAGATGGAG 58.734 38.462 0.00 0.00 0.00 3.86
4122 4502 3.374367 TCGAAATCGTGAACAAAACCACA 59.626 39.130 2.41 0.00 40.80 4.17
4147 4527 7.797121 AGGGATTCATTTTGAGTATTTGGTT 57.203 32.000 0.00 0.00 0.00 3.67
4184 4564 7.711846 TGCATATACAAAATTGATTACGGCTT 58.288 30.769 0.00 0.00 0.00 4.35
4224 4604 8.537016 ATCTTTTGATTGTCATGAAATGATGGT 58.463 29.630 0.00 0.00 46.16 3.55
4643 5027 0.907486 AGCCAAGCTCAGCATACAGA 59.093 50.000 0.00 0.00 30.62 3.41
4709 5093 5.292589 ACCGGAAACATAATATGTCGAACAC 59.707 40.000 9.46 0.00 44.07 3.32
5170 5719 7.082602 AGTTTACGCTATATTACAGGTGATCG 58.917 38.462 0.00 0.00 0.00 3.69
5229 5778 4.165950 AGGGCATCAATAATCACAGGTGTA 59.834 41.667 0.00 0.00 0.00 2.90
5342 5891 0.524180 GAAAATGCGCACCTGCTAGC 60.524 55.000 14.90 8.10 39.32 3.42
5354 5903 6.088824 CCATTAGTTGTCTGTCTGAAAATGC 58.911 40.000 0.00 0.00 0.00 3.56
5356 5905 8.157476 AGTACCATTAGTTGTCTGTCTGAAAAT 58.843 33.333 0.00 0.00 0.00 1.82
5417 5966 6.596888 CAGGAACAAGAGCATATCTTTCAGAA 59.403 38.462 0.00 0.00 46.49 3.02
5463 6012 7.201956 GGAGGATGTTTCATGTCTACTAGTCAT 60.202 40.741 0.00 0.00 0.00 3.06
5464 6013 6.096987 GGAGGATGTTTCATGTCTACTAGTCA 59.903 42.308 0.00 0.00 0.00 3.41
5465 6014 6.322712 AGGAGGATGTTTCATGTCTACTAGTC 59.677 42.308 0.00 0.00 0.00 2.59
5466 6015 6.198639 AGGAGGATGTTTCATGTCTACTAGT 58.801 40.000 0.00 0.00 0.00 2.57
5496 6282 9.274206 GGTATGTAAAAGAACTTCATATCCTCC 57.726 37.037 0.00 0.00 0.00 4.30
5537 6323 6.877611 ACAGATTAACACGGTTCAATCTTT 57.122 33.333 6.09 0.00 35.96 2.52
5546 6332 3.244284 TGCAACCTACAGATTAACACGGT 60.244 43.478 0.00 0.00 0.00 4.83
5568 6355 1.577328 CGCTGACATCGCCTGGTTTT 61.577 55.000 0.00 0.00 0.00 2.43
5919 6714 4.822036 TTGATTGTACCGTCCAAACAAG 57.178 40.909 0.00 0.00 36.62 3.16
6054 6858 9.880064 CTCATTTCATTGTCATTAGCTCATTAG 57.120 33.333 0.00 0.00 0.00 1.73
6229 7052 3.969553 AGGCAAGGGTAATCTTCCTTTC 58.030 45.455 0.00 0.00 41.06 2.62
6264 7087 2.919666 AATAAGATGGTTGCGTGCAC 57.080 45.000 6.82 6.82 0.00 4.57
6346 7171 1.609072 GGGTTGTGGCTTTGAGTTCTC 59.391 52.381 0.00 0.00 0.00 2.87
6366 7191 3.738282 GGCATCTAGTTCTATGTTCTGCG 59.262 47.826 0.00 0.00 0.00 5.18
6396 7221 2.104111 TGGCGGTCCAACAATAGGATAG 59.896 50.000 0.00 0.00 39.99 2.08
6440 7265 1.092348 CGATCTGAGACGGTACCACA 58.908 55.000 13.54 5.40 0.00 4.17
6484 7309 0.037590 TTAGCCGTGTGGAAGCCAAT 59.962 50.000 0.00 0.00 37.49 3.16
6494 7319 2.288948 TGTGGTCGTTATTTAGCCGTGT 60.289 45.455 0.00 0.00 0.00 4.49
6620 7446 1.469335 ATTCGACTCGGGGTGTGTGT 61.469 55.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.