Multiple sequence alignment - TraesCS2D01G303200

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G303200 chr2D 100.000 7059 0 0 1729 8787 387186029 387193087 0.000000e+00 13036.0
1 TraesCS2D01G303200 chr2D 100.000 1481 0 0 1 1481 387184301 387185781 0.000000e+00 2736.0
2 TraesCS2D01G303200 chr2D 100.000 363 0 0 9163 9525 387193463 387193825 0.000000e+00 671.0
3 TraesCS2D01G303200 chr2D 90.206 388 23 8 1 374 458302385 458301999 8.590000e-135 492.0
4 TraesCS2D01G303200 chr2D 99.052 211 2 0 373 583 315111666 315111456 6.980000e-101 379.0
5 TraesCS2D01G303200 chr2D 99.048 210 2 0 374 583 574901148 574901357 2.510000e-100 377.0
6 TraesCS2D01G303200 chr2D 86.517 267 26 4 7948 8204 78507348 78507082 1.570000e-72 285.0
7 TraesCS2D01G303200 chr2D 83.019 265 40 5 7944 8206 644519913 644520174 1.600000e-57 235.0
8 TraesCS2D01G303200 chr2D 96.183 131 5 0 9395 9525 50239884 50240014 2.080000e-51 215.0
9 TraesCS2D01G303200 chr2D 89.865 148 14 1 3799 3946 295800139 295799993 1.260000e-43 189.0
10 TraesCS2D01G303200 chr2D 97.115 104 3 0 3688 3791 380419910 380419807 9.830000e-40 176.0
11 TraesCS2D01G303200 chr2A 95.553 6499 205 37 1886 8338 523862896 523869356 0.000000e+00 10323.0
12 TraesCS2D01G303200 chr2A 92.399 421 16 2 8327 8747 523872564 523872968 3.830000e-163 586.0
13 TraesCS2D01G303200 chr2A 93.182 308 6 2 895 1202 523861988 523862280 1.140000e-118 438.0
14 TraesCS2D01G303200 chr2A 89.933 149 14 1 3798 3946 364468247 364468100 3.510000e-44 191.0
15 TraesCS2D01G303200 chr2A 97.196 107 3 0 9167 9273 523872974 523873080 2.110000e-41 182.0
16 TraesCS2D01G303200 chr2A 96.190 105 4 0 3686 3790 486504634 486504530 1.270000e-38 172.0
17 TraesCS2D01G303200 chr2A 95.050 101 5 0 9287 9387 523873306 523873406 9.900000e-35 159.0
18 TraesCS2D01G303200 chr2A 85.075 134 17 1 5425 5558 39255154 39255024 6.000000e-27 134.0
19 TraesCS2D01G303200 chr2A 86.614 127 10 4 1746 1865 523862684 523862810 6.000000e-27 134.0
20 TraesCS2D01G303200 chr2A 82.787 122 15 4 1730 1846 656957292 656957172 4.710000e-18 104.0
21 TraesCS2D01G303200 chr2A 95.349 43 2 0 1851 1893 450885216 450885258 1.720000e-07 69.4
22 TraesCS2D01G303200 chr2B 96.305 5007 132 30 3765 8742 458244136 458249118 0.000000e+00 8172.0
23 TraesCS2D01G303200 chr2B 95.333 1907 79 6 1876 3780 458242212 458244110 0.000000e+00 3020.0
24 TraesCS2D01G303200 chr2B 93.385 907 40 9 583 1473 458241016 458241918 0.000000e+00 1325.0
25 TraesCS2D01G303200 chr2B 93.548 372 23 1 4 374 458240633 458241004 3.890000e-153 553.0
26 TraesCS2D01G303200 chr2B 80.184 434 70 7 5014 5441 706838136 706837713 2.580000e-80 311.0
27 TraesCS2D01G303200 chr2B 86.813 273 31 4 5770 6039 706835989 706835719 5.590000e-77 300.0
28 TraesCS2D01G303200 chr2B 93.431 137 9 0 9388 9524 797329971 797329835 4.510000e-48 204.0
29 TraesCS2D01G303200 chr2B 95.200 125 4 2 9167 9289 458249129 458249253 7.550000e-46 196.0
30 TraesCS2D01G303200 chr2B 94.203 69 2 2 1784 1850 458241941 458242009 4.710000e-18 104.0
31 TraesCS2D01G303200 chr7D 91.076 381 26 5 1 374 207551891 207551512 8.530000e-140 508.0
32 TraesCS2D01G303200 chr7D 99.524 210 1 0 374 583 565188933 565189142 5.400000e-102 383.0
33 TraesCS2D01G303200 chr7D 99.048 210 1 1 374 583 557755587 557755795 9.030000e-100 375.0
34 TraesCS2D01G303200 chr7D 91.039 279 18 4 1 273 332885846 332885569 4.200000e-98 370.0
35 TraesCS2D01G303200 chr7D 86.344 227 25 6 376 600 634903693 634903471 9.560000e-60 243.0
36 TraesCS2D01G303200 chr7D 97.842 139 3 0 9387 9525 500775449 500775587 3.440000e-59 241.0
37 TraesCS2D01G303200 chr7D 93.220 118 7 1 3675 3791 249424914 249424797 1.270000e-38 172.0
38 TraesCS2D01G303200 chr7D 90.385 52 5 0 2119 2170 578917240 578917291 1.720000e-07 69.4
39 TraesCS2D01G303200 chr7D 90.385 52 1 4 1840 1887 633147184 633147133 2.220000e-06 65.8
40 TraesCS2D01G303200 chr6D 90.956 387 22 4 1 374 137121670 137122056 8.530000e-140 508.0
41 TraesCS2D01G303200 chr6D 90.217 368 23 3 20 374 428601137 428600770 1.450000e-127 468.0
42 TraesCS2D01G303200 chr6D 84.000 475 64 8 4227 4690 37598240 37597767 6.790000e-121 446.0
43 TraesCS2D01G303200 chr6D 79.112 608 84 23 4964 5559 37597465 37596889 6.980000e-101 379.0
44 TraesCS2D01G303200 chr6D 85.912 362 42 7 3 356 466540790 466540430 2.510000e-100 377.0
45 TraesCS2D01G303200 chr6D 92.793 222 13 3 374 595 428660221 428660003 1.540000e-82 318.0
46 TraesCS2D01G303200 chr6D 86.385 213 23 5 7996 8203 17182299 17182088 2.680000e-55 228.0
47 TraesCS2D01G303200 chr6D 81.818 264 39 4 7950 8204 151317475 151317212 7.490000e-51 213.0
48 TraesCS2D01G303200 chr6D 95.420 131 6 0 9395 9525 125089655 125089785 9.690000e-50 209.0
49 TraesCS2D01G303200 chr6D 81.226 261 40 3 7952 8203 34432343 34432083 1.620000e-47 202.0
50 TraesCS2D01G303200 chr6D 93.284 134 9 0 9392 9525 428908502 428908369 2.100000e-46 198.0
51 TraesCS2D01G303200 chr6D 93.893 131 8 0 9395 9525 432678338 432678208 2.100000e-46 198.0
52 TraesCS2D01G303200 chr6D 93.893 131 8 0 9395 9525 467802432 467802302 2.100000e-46 198.0
53 TraesCS2D01G303200 chr6D 92.537 134 10 0 9392 9525 467084016 467084149 9.760000e-45 193.0
54 TraesCS2D01G303200 chr6D 92.424 132 10 0 9394 9525 96521346 96521477 1.260000e-43 189.0
55 TraesCS2D01G303200 chr6D 92.366 131 10 0 9395 9525 438321895 438321765 4.540000e-43 187.0
56 TraesCS2D01G303200 chr6D 90.141 142 12 2 9385 9525 82376053 82375913 5.880000e-42 183.0
57 TraesCS2D01G303200 chr6D 79.310 261 43 5 7952 8203 257141887 257141629 1.270000e-38 172.0
58 TraesCS2D01G303200 chr6D 96.078 102 3 1 3832 3932 199651919 199651818 2.130000e-36 165.0
59 TraesCS2D01G303200 chr6D 78.947 266 39 14 7952 8204 290303158 290303419 2.130000e-36 165.0
60 TraesCS2D01G303200 chr6D 78.626 262 45 6 7952 8203 319834861 319834601 7.650000e-36 163.0
61 TraesCS2D01G303200 chr6D 95.556 45 0 2 1843 1887 353812262 353812304 4.770000e-08 71.3
62 TraesCS2D01G303200 chr6D 100.000 37 0 0 1851 1887 9406697 9406733 1.720000e-07 69.4
63 TraesCS2D01G303200 chr6D 100.000 37 0 0 1851 1887 25878822 25878786 1.720000e-07 69.4
64 TraesCS2D01G303200 chr6D 100.000 37 0 0 1851 1887 296699497 296699533 1.720000e-07 69.4
65 TraesCS2D01G303200 chr6D 100.000 37 0 0 1851 1887 299191268 299191304 1.720000e-07 69.4
66 TraesCS2D01G303200 chr6D 100.000 37 0 0 1851 1887 340947306 340947270 1.720000e-07 69.4
67 TraesCS2D01G303200 chr6D 100.000 28 0 0 7948 7975 419773646 419773673 1.700000e-02 52.8
68 TraesCS2D01G303200 chr4D 90.439 387 24 4 1 374 504376856 504377242 1.850000e-136 497.0
69 TraesCS2D01G303200 chr4D 90.181 387 25 4 1 374 504350756 504351142 8.590000e-135 492.0
70 TraesCS2D01G303200 chr4D 90.181 387 25 4 1 374 504406230 504406616 8.590000e-135 492.0
71 TraesCS2D01G303200 chr4D 97.761 134 3 0 9392 9525 49508590 49508723 2.070000e-56 231.0
72 TraesCS2D01G303200 chr4D 94.118 136 8 0 9390 9525 43645042 43644907 3.490000e-49 207.0
73 TraesCS2D01G303200 chr4D 79.853 273 45 4 7948 8211 92304260 92304531 3.510000e-44 191.0
74 TraesCS2D01G303200 chr4D 96.190 105 4 0 3686 3790 117424994 117425098 1.270000e-38 172.0
75 TraesCS2D01G303200 chr4D 100.000 38 0 0 1851 1888 434981347 434981310 4.770000e-08 71.3
76 TraesCS2D01G303200 chr4D 93.333 45 3 0 1842 1886 14609593 14609637 6.170000e-07 67.6
77 TraesCS2D01G303200 chr4D 97.297 37 1 0 1851 1887 493742433 493742397 7.990000e-06 63.9
78 TraesCS2D01G303200 chr4D 100.000 28 0 0 7948 7975 51672065 51672092 1.700000e-02 52.8
79 TraesCS2D01G303200 chr1D 89.433 388 26 5 1 374 365751858 365751472 8.660000e-130 475.0
80 TraesCS2D01G303200 chr1D 99.048 210 2 0 374 583 460311287 460311496 2.510000e-100 377.0
81 TraesCS2D01G303200 chr1D 85.818 275 35 1 3387 3661 149648201 149647931 1.210000e-73 289.0
82 TraesCS2D01G303200 chr1D 89.686 223 19 4 374 595 269356163 269355944 2.030000e-71 281.0
83 TraesCS2D01G303200 chr1D 81.022 274 39 8 7952 8214 474600921 474601192 1.250000e-48 206.0
84 TraesCS2D01G303200 chr1D 94.656 131 7 0 9395 9525 463382066 463381936 4.510000e-48 204.0
85 TraesCS2D01G303200 chr1D 91.781 146 10 2 9382 9525 246647232 246647377 1.620000e-47 202.0
86 TraesCS2D01G303200 chr1D 80.970 268 39 11 7952 8208 481276393 481276127 1.620000e-47 202.0
87 TraesCS2D01G303200 chr1D 83.415 205 30 4 8001 8203 307697832 307697630 4.540000e-43 187.0
88 TraesCS2D01G303200 chr1D 89.189 74 8 0 2096 2169 28563553 28563626 1.020000e-14 93.5
89 TraesCS2D01G303200 chr1D 91.667 48 1 2 1842 1886 346867712 346867665 7.990000e-06 63.9
90 TraesCS2D01G303200 chr3D 88.918 388 26 6 1 374 535648568 535648952 6.740000e-126 462.0
91 TraesCS2D01G303200 chr3D 99.048 210 2 0 374 583 96415322 96415113 2.510000e-100 377.0
92 TraesCS2D01G303200 chr3D 91.892 222 15 3 374 595 9075923 9075705 3.340000e-79 307.0
93 TraesCS2D01G303200 chr3D 86.282 277 26 6 588 853 33331755 33332030 3.370000e-74 291.0
94 TraesCS2D01G303200 chr3D 83.333 276 38 5 3386 3658 348132778 348133048 2.050000e-61 248.0
95 TraesCS2D01G303200 chr3D 94.030 134 8 0 9392 9525 537154699 537154832 4.510000e-48 204.0
96 TraesCS2D01G303200 chr3D 96.226 106 4 0 3686 3791 104810307 104810202 3.540000e-39 174.0
97 TraesCS2D01G303200 chr3D 74.265 272 56 9 7949 8210 402683737 402683470 1.690000e-17 102.0
98 TraesCS2D01G303200 chr3D 75.893 224 38 10 7951 8162 586511701 586511482 6.090000e-17 100.0
99 TraesCS2D01G303200 chr7A 80.000 630 112 12 2222 2841 79620604 79619979 4.060000e-123 453.0
100 TraesCS2D01G303200 chr7A 94.737 133 6 1 9393 9525 32959958 32959827 1.250000e-48 206.0
101 TraesCS2D01G303200 chr7A 92.373 118 8 1 3675 3791 271734348 271734465 5.920000e-37 167.0
102 TraesCS2D01G303200 chr7A 92.793 111 6 2 3841 3949 271735137 271735247 9.900000e-35 159.0
103 TraesCS2D01G303200 chr7A 93.617 47 2 1 1842 1887 407863997 407864043 1.720000e-07 69.4
104 TraesCS2D01G303200 chr1B 89.728 331 20 6 58 374 323335438 323335768 2.480000e-110 411.0
105 TraesCS2D01G303200 chr1B 91.228 228 12 4 374 600 561635182 561634962 4.320000e-78 303.0
106 TraesCS2D01G303200 chr1B 96.040 101 4 0 3841 3941 254467450 254467550 2.130000e-36 165.0
107 TraesCS2D01G303200 chr6A 89.815 324 19 4 65 374 346587125 346586802 4.140000e-108 403.0
108 TraesCS2D01G303200 chr6A 85.938 256 29 6 7952 8203 554512543 554512795 5.670000e-67 267.0
109 TraesCS2D01G303200 chr6A 90.270 185 18 0 7997 8181 611459473 611459657 9.560000e-60 243.0
110 TraesCS2D01G303200 chr6A 85.333 225 27 5 374 595 560481485 560481264 2.680000e-55 228.0
111 TraesCS2D01G303200 chr6A 93.233 133 9 0 9393 9525 91902569 91902437 7.550000e-46 196.0
112 TraesCS2D01G303200 chr6A 80.303 264 43 3 7951 8205 610645710 610645973 3.510000e-44 191.0
113 TraesCS2D01G303200 chr5D 99.048 210 2 0 374 583 372333759 372333968 2.510000e-100 377.0
114 TraesCS2D01G303200 chr5D 99.048 210 1 1 374 583 205116843 205117051 9.030000e-100 375.0
115 TraesCS2D01G303200 chr5D 85.818 275 34 3 3385 3658 281028536 281028806 4.350000e-73 287.0
116 TraesCS2D01G303200 chr5D 89.474 228 11 6 1 215 58018789 58018562 9.420000e-70 276.0
117 TraesCS2D01G303200 chr5D 84.436 257 32 8 7951 8203 286167692 286167944 7.390000e-61 246.0
118 TraesCS2D01G303200 chr5D 86.026 229 26 6 374 600 500641646 500641870 3.440000e-59 241.0
119 TraesCS2D01G303200 chr5D 95.420 131 6 0 9395 9525 384145774 384145644 9.690000e-50 209.0
120 TraesCS2D01G303200 chr5D 92.982 114 5 3 3833 3944 209640053 209639941 7.650000e-36 163.0
121 TraesCS2D01G303200 chr5D 78.077 260 47 3 7952 8201 397198104 397198363 1.280000e-33 156.0
122 TraesCS2D01G303200 chr5D 97.500 40 1 0 1847 1886 7035773 7035734 1.720000e-07 69.4
123 TraesCS2D01G303200 chr5D 91.304 46 4 0 1842 1887 6375527 6375572 7.990000e-06 63.9
124 TraesCS2D01G303200 chr5D 91.489 47 3 1 1842 1887 310705261 310705307 7.990000e-06 63.9
125 TraesCS2D01G303200 chr3B 99.048 210 2 0 374 583 224829789 224829580 2.510000e-100 377.0
126 TraesCS2D01G303200 chr3B 79.814 431 64 9 5014 5441 503988748 503988338 9.360000e-75 292.0
127 TraesCS2D01G303200 chr3B 86.328 256 23 6 588 832 829336715 829336461 1.580000e-67 268.0
128 TraesCS2D01G303200 chr3B 86.154 260 17 9 588 832 388052833 388053088 7.340000e-66 263.0
129 TraesCS2D01G303200 chr3B 86.784 227 27 3 3380 3605 341226545 341226769 5.710000e-62 250.0
130 TraesCS2D01G303200 chr1A 89.516 248 21 5 362 607 584306003 584305759 9.290000e-80 309.0
131 TraesCS2D01G303200 chr1A 85.294 272 36 1 3387 3658 209356383 209356650 2.620000e-70 278.0
132 TraesCS2D01G303200 chr1A 83.214 280 32 6 588 852 506475108 506475387 9.560000e-60 243.0
133 TraesCS2D01G303200 chr1A 95.420 131 6 0 9395 9525 181769588 181769458 9.690000e-50 209.0
134 TraesCS2D01G303200 chr1A 93.893 131 8 0 9395 9525 39438838 39438968 2.100000e-46 198.0
135 TraesCS2D01G303200 chr1A 93.893 131 8 0 9395 9525 58165980 58165850 2.100000e-46 198.0
136 TraesCS2D01G303200 chr1A 92.199 141 9 1 9385 9525 566481177 566481039 2.100000e-46 198.0
137 TraesCS2D01G303200 chr1A 93.893 131 8 0 9395 9525 580955827 580955957 2.100000e-46 198.0
138 TraesCS2D01G303200 chr1A 92.086 139 11 0 9387 9525 84012378 84012516 7.550000e-46 196.0
139 TraesCS2D01G303200 chr1A 80.534 262 40 6 7952 8203 319336059 319336319 3.510000e-44 191.0
140 TraesCS2D01G303200 chr1A 82.266 203 36 0 8001 8203 521559707 521559909 9.830000e-40 176.0
141 TraesCS2D01G303200 chr1A 79.245 265 42 6 7951 8204 548430722 548430460 1.270000e-38 172.0
142 TraesCS2D01G303200 chr1A 81.818 209 33 5 7998 8204 536656984 536657189 4.570000e-38 171.0
143 TraesCS2D01G303200 chr1A 100.000 39 0 0 1851 1889 349999540 349999502 1.330000e-08 73.1
144 TraesCS2D01G303200 chr5A 87.925 265 21 6 7951 8206 439870736 439870474 1.550000e-77 302.0
145 TraesCS2D01G303200 chr5A 87.778 180 21 1 7995 8174 7023876 7024054 9.690000e-50 209.0
146 TraesCS2D01G303200 chr5A 94.656 131 7 0 9395 9525 320214405 320214275 4.510000e-48 204.0
147 TraesCS2D01G303200 chr5A 95.283 106 5 0 3686 3791 141878868 141878763 1.650000e-37 169.0
148 TraesCS2D01G303200 chr5A 78.014 282 47 9 2238 2516 627032197 627032466 7.650000e-36 163.0
149 TraesCS2D01G303200 chr5A 100.000 38 0 0 1851 1888 631328494 631328457 4.770000e-08 71.3
150 TraesCS2D01G303200 chr5A 97.368 38 1 0 1851 1888 482768110 482768147 2.220000e-06 65.8
151 TraesCS2D01G303200 chr5A 100.000 30 0 0 7951 7980 29127154 29127125 1.000000e-03 56.5
152 TraesCS2D01G303200 chr5B 86.496 274 33 2 3385 3658 318999105 318999374 2.010000e-76 298.0
153 TraesCS2D01G303200 chr5B 87.547 265 23 4 7951 8206 398078637 398078374 2.010000e-76 298.0
154 TraesCS2D01G303200 chr5B 81.481 270 36 13 7952 8209 352305052 352304785 9.690000e-50 209.0
155 TraesCS2D01G303200 chr5B 96.094 128 5 0 9395 9522 554791410 554791537 9.690000e-50 209.0
156 TraesCS2D01G303200 chr5B 95.385 130 6 0 9395 9524 358271992 358271863 3.490000e-49 207.0
157 TraesCS2D01G303200 chr5B 93.939 132 8 0 9394 9525 82456979 82456848 5.830000e-47 200.0
158 TraesCS2D01G303200 chr5B 83.582 134 19 1 5425 5558 16400516 16400646 1.300000e-23 122.0
159 TraesCS2D01G303200 chr5B 97.561 41 0 1 1851 1890 664951572 664951612 1.720000e-07 69.4
160 TraesCS2D01G303200 chr4B 89.520 229 20 4 374 600 591929077 591929303 4.350000e-73 287.0
161 TraesCS2D01G303200 chr4B 91.304 46 4 0 1842 1887 670388300 670388345 7.990000e-06 63.9
162 TraesCS2D01G303200 chr7B 87.109 256 22 5 588 832 634288301 634288556 7.280000e-71 279.0
163 TraesCS2D01G303200 chr7B 85.098 255 28 5 588 832 361654840 361654586 1.590000e-62 252.0
164 TraesCS2D01G303200 chr7B 83.650 263 38 3 3397 3658 446139454 446139712 9.560000e-60 243.0
165 TraesCS2D01G303200 chr7B 81.787 291 38 10 588 863 83987791 83988081 7.440000e-56 230.0
166 TraesCS2D01G303200 chr7B 88.312 77 6 3 1777 1851 676297721 676297646 1.320000e-13 89.8
167 TraesCS2D01G303200 chr7B 100.000 36 0 0 1851 1886 60869966 60869931 6.170000e-07 67.6
168 TraesCS2D01G303200 chr3A 87.190 242 20 3 5014 5251 702225953 702226187 2.040000e-66 265.0
169 TraesCS2D01G303200 chr3A 85.338 266 26 5 7952 8204 12975942 12975677 7.340000e-66 263.0
170 TraesCS2D01G303200 chr3A 78.391 435 58 13 5016 5441 374729770 374730177 5.710000e-62 250.0
171 TraesCS2D01G303200 chr3A 90.000 150 14 1 9377 9525 627964903 627965052 9.760000e-45 193.0
172 TraesCS2D01G303200 chr3A 85.714 133 16 1 5425 5557 709439144 709439273 4.640000e-28 137.0
173 TraesCS2D01G303200 chr3A 89.062 64 4 1 5494 5557 552420866 552420806 1.030000e-09 76.8
174 TraesCS2D01G303200 chr3A 100.000 38 0 0 1851 1888 505237289 505237252 4.770000e-08 71.3
175 TraesCS2D01G303200 chr6B 83.453 278 31 7 588 850 603793545 603793822 2.660000e-60 244.0
176 TraesCS2D01G303200 chr6B 93.985 133 8 0 9393 9525 690962945 690962813 1.620000e-47 202.0
177 TraesCS2D01G303200 chr6B 76.042 192 26 12 7951 8123 692573016 692573206 2.200000e-11 82.4
178 TraesCS2D01G303200 chr4A 81.849 292 36 9 588 862 657529621 657529912 7.440000e-56 230.0
179 TraesCS2D01G303200 chr4A 73.091 275 55 14 7951 8211 723602532 723602263 7.930000e-11 80.5
180 TraesCS2D01G303200 chrUn 93.333 135 9 0 9391 9525 20846281 20846147 5.830000e-47 200.0
181 TraesCS2D01G303200 chrUn 93.182 132 9 0 9394 9525 141680745 141680876 2.710000e-45 195.0
182 TraesCS2D01G303200 chrUn 92.424 132 10 0 9394 9525 96464973 96464842 1.260000e-43 189.0
183 TraesCS2D01G303200 chrUn 91.667 132 11 0 9394 9525 31220658 31220527 5.880000e-42 183.0
184 TraesCS2D01G303200 chrUn 91.667 132 11 0 9394 9525 41734377 41734246 5.880000e-42 183.0
185 TraesCS2D01G303200 chrUn 91.176 136 11 1 9390 9525 81477634 81477768 5.880000e-42 183.0
186 TraesCS2D01G303200 chrUn 91.111 135 11 1 9392 9525 95767446 95767580 2.110000e-41 182.0
187 TraesCS2D01G303200 chrUn 91.603 131 11 0 9394 9524 144757428 144757298 2.110000e-41 182.0
188 TraesCS2D01G303200 chrUn 91.603 131 11 0 9394 9524 144794469 144794339 2.110000e-41 182.0
189 TraesCS2D01G303200 chrUn 91.603 131 11 0 9394 9524 144826791 144826661 2.110000e-41 182.0
190 TraesCS2D01G303200 chrUn 94.118 119 7 0 9392 9510 320881575 320881693 2.110000e-41 182.0
191 TraesCS2D01G303200 chrUn 80.000 265 36 13 7952 8203 28671333 28671073 7.600000e-41 180.0
192 TraesCS2D01G303200 chrUn 80.567 247 37 5 7952 8188 32189166 32189411 7.600000e-41 180.0
193 TraesCS2D01G303200 chrUn 79.245 265 42 8 7952 8205 31198134 31197872 1.270000e-38 172.0
194 TraesCS2D01G303200 chrUn 96.040 101 4 0 3841 3941 253162598 253162498 2.130000e-36 165.0
195 TraesCS2D01G303200 chrUn 80.347 173 26 8 8001 8167 155034333 155034163 3.610000e-24 124.0
196 TraesCS2D01G303200 chrUn 86.170 94 13 0 8111 8204 36809649 36809742 1.690000e-17 102.0
197 TraesCS2D01G303200 chrUn 91.228 57 2 2 7951 8006 289035821 289035875 3.690000e-09 75.0
198 TraesCS2D01G303200 chrUn 100.000 39 0 0 1851 1889 10254795 10254757 1.330000e-08 73.1
199 TraesCS2D01G303200 chrUn 100.000 37 0 0 1851 1887 127028262 127028226 1.720000e-07 69.4
200 TraesCS2D01G303200 chrUn 100.000 37 0 0 1851 1887 253929086 253929122 1.720000e-07 69.4
201 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 3346403 3346438 6.170000e-07 67.6
202 TraesCS2D01G303200 chrUn 97.436 39 1 0 1851 1889 10248028 10247990 6.170000e-07 67.6
203 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 36436970 36436935 6.170000e-07 67.6
204 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 41223903 41223868 6.170000e-07 67.6
205 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 101630805 101630840 6.170000e-07 67.6
206 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 380168711 380168676 6.170000e-07 67.6
207 TraesCS2D01G303200 chrUn 100.000 36 0 0 1851 1886 442634261 442634226 6.170000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G303200 chr2D 387184301 387193825 9524 False 5481.000000 13036 100.000000 1 9525 3 chr2D.!!$F4 9524
1 TraesCS2D01G303200 chr2A 523861988 523873406 11418 False 1970.333333 10323 93.332333 895 9387 6 chr2A.!!$F2 8492
2 TraesCS2D01G303200 chr2B 458240633 458249253 8620 False 2228.333333 8172 94.662333 4 9289 6 chr2B.!!$F1 9285
3 TraesCS2D01G303200 chr2B 706835719 706838136 2417 True 305.500000 311 83.498500 5014 6039 2 chr2B.!!$R2 1025
4 TraesCS2D01G303200 chr6D 37596889 37598240 1351 True 412.500000 446 81.556000 4227 5559 2 chr6D.!!$R17 1332
5 TraesCS2D01G303200 chr7A 79619979 79620604 625 True 453.000000 453 80.000000 2222 2841 1 chr7A.!!$R2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 504 0.032952 AAGCCGTCGTCTAAGCAACA 59.967 50.000 0.00 0.00 0.00 3.33 F
503 505 0.032952 AGCCGTCGTCTAAGCAACAA 59.967 50.000 0.00 0.00 0.00 2.83 F
538 540 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13 F
2048 2249 0.037605 GTCCCCGAGTACACCAACAG 60.038 60.000 0.00 0.00 0.00 3.16 F
2110 2311 0.179000 ATCATCGAGGAACTGCACCC 59.821 55.000 2.91 0.00 41.55 4.61 F
2797 3013 0.380378 GTTGCAACGAGCTCCACAAA 59.620 50.000 14.90 0.00 45.94 2.83 F
4515 4782 1.027357 ATGGCATGTCGATCTTTGCC 58.973 50.000 18.41 18.41 42.28 4.52 F
4646 4931 2.173569 GAGGTAGGAACTGGCATTGGAT 59.826 50.000 0.00 0.00 41.52 3.41 F
6280 8300 2.884012 TGCAGGTTACAGTGATTGGTTG 59.116 45.455 0.00 0.00 0.00 3.77 F
7841 9872 0.465460 AAAGTGTGCCGCCTTTCTGA 60.465 50.000 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1762 0.031721 GCATATGGCCAGCTTTGAGC 59.968 55.000 13.05 4.41 37.88 4.26 R
1911 2112 0.178967 TGCTGCATCCCTCAACCAAA 60.179 50.000 0.00 0.00 0.00 3.28 R
2405 2607 0.459237 CTACTCAGCAACCCAGCGAG 60.459 60.000 0.00 0.00 39.40 5.03 R
3645 3862 1.140252 GTCCTATGTGTAATGCCCCGT 59.860 52.381 0.00 0.00 0.00 5.28 R
3952 4217 1.859427 AAGCTACGTCTCGTTCGGCA 61.859 55.000 0.00 0.00 41.54 5.69 R
4627 4912 2.736670 ATCCAATGCCAGTTCCTACC 57.263 50.000 0.00 0.00 0.00 3.18 R
5361 5820 3.872511 TGCTGGCATATTGAAGTTTGG 57.127 42.857 0.00 0.00 0.00 3.28 R
6595 8615 3.750371 ACACAGCTACATTTGCCTAACA 58.250 40.909 0.00 0.00 0.00 2.41 R
8257 10288 1.739466 CCGTTCCCAATGTGATGACAG 59.261 52.381 0.00 0.00 34.87 3.51 R
9389 14854 1.355381 TGGAACGGAGGGAGTAGTACA 59.645 52.381 2.52 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.281414 TCCATGTGCGTGTGGGTG 60.281 61.111 0.00 0.00 36.15 4.61
31 32 2.899838 TGCGTGTGGGTGAACTGC 60.900 61.111 0.00 0.00 0.00 4.40
35 36 0.738389 CGTGTGGGTGAACTGCTTTT 59.262 50.000 0.00 0.00 0.00 2.27
45 46 0.738389 AACTGCTTTTCACCCACACG 59.262 50.000 0.00 0.00 0.00 4.49
56 57 0.468585 ACCCACACGACACTCCTACA 60.469 55.000 0.00 0.00 0.00 2.74
74 75 2.318908 ACATTGTTGGATGGCAACTGT 58.681 42.857 0.00 0.00 33.97 3.55
136 137 4.310769 ACTATGATTCATTGCTAGACGGC 58.689 43.478 4.14 0.00 0.00 5.68
167 168 3.081061 GGCACCAGATAAACACACATGA 58.919 45.455 0.00 0.00 0.00 3.07
171 172 5.451908 CACCAGATAAACACACATGACAAC 58.548 41.667 0.00 0.00 0.00 3.32
241 243 7.381323 ACTAGGTAAACACACATGGTAACTAC 58.619 38.462 0.00 0.00 37.61 2.73
247 249 6.371809 AACACACATGGTAACTACTGTTTG 57.628 37.500 0.00 0.00 37.59 2.93
254 256 7.552687 CACATGGTAACTACTGTTTGACCATAT 59.447 37.037 12.96 3.54 46.04 1.78
258 260 6.315393 GGTAACTACTGTTTGACCATATGTGG 59.685 42.308 6.99 6.99 42.97 4.17
301 303 1.501169 ACTACGGTTTGGTTACACGC 58.499 50.000 0.00 0.00 0.00 5.34
310 312 2.728690 TGGTTACACGCGACAACTAT 57.271 45.000 15.93 0.00 0.00 2.12
311 313 3.029320 TGGTTACACGCGACAACTATT 57.971 42.857 15.93 0.00 0.00 1.73
374 376 4.670896 AGTTGCCATGCTTTTACAACTT 57.329 36.364 0.00 0.00 46.47 2.66
375 377 5.022282 AGTTGCCATGCTTTTACAACTTT 57.978 34.783 0.00 0.00 46.47 2.66
376 378 5.427378 AGTTGCCATGCTTTTACAACTTTT 58.573 33.333 0.00 0.00 46.47 2.27
377 379 5.879777 AGTTGCCATGCTTTTACAACTTTTT 59.120 32.000 0.00 0.00 46.47 1.94
398 400 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
399 401 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
400 402 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
401 403 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
407 409 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
413 415 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
414 416 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
415 417 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
418 420 4.166888 GCCTCTGCATCTGGGCGA 62.167 66.667 0.00 0.00 37.47 5.54
419 421 2.827423 CCTCTGCATCTGGGCGAT 59.173 61.111 0.00 0.00 36.28 4.58
426 428 2.156542 CATCTGGGCGATGCATACG 58.843 57.895 0.00 6.68 42.75 3.06
427 429 1.004560 ATCTGGGCGATGCATACGG 60.005 57.895 16.56 6.65 0.00 4.02
432 434 2.588877 GCGATGCATACGGCCACT 60.589 61.111 16.56 0.00 43.89 4.00
433 435 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
434 436 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
435 437 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
436 438 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
437 439 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
438 440 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
439 441 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
440 442 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
441 443 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
442 444 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
443 445 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
444 446 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
445 447 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
446 448 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
448 450 9.787435 ATACGGCCACTTTATTAATTATTCTCA 57.213 29.630 2.24 0.00 0.00 3.27
449 451 7.927048 ACGGCCACTTTATTAATTATTCTCAC 58.073 34.615 2.24 0.00 0.00 3.51
450 452 7.554835 ACGGCCACTTTATTAATTATTCTCACA 59.445 33.333 2.24 0.00 0.00 3.58
451 453 8.402472 CGGCCACTTTATTAATTATTCTCACAA 58.598 33.333 2.24 0.00 0.00 3.33
452 454 9.736023 GGCCACTTTATTAATTATTCTCACAAG 57.264 33.333 0.00 0.00 0.00 3.16
464 466 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
465 467 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
466 468 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
467 469 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
468 470 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
469 471 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
470 472 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
471 473 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
472 474 7.225931 TCACAAGACCTTACAAAGTCATACAAC 59.774 37.037 0.00 0.00 0.00 3.32
473 475 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
474 476 7.226720 ACAAGACCTTACAAAGTCATACAACAG 59.773 37.037 0.00 0.00 0.00 3.16
475 477 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
476 478 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
477 479 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
478 480 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
479 481 8.426489 ACCTTACAAAGTCATACAACAGTAAGA 58.574 33.333 0.00 0.00 39.45 2.10
480 482 8.709646 CCTTACAAAGTCATACAACAGTAAGAC 58.290 37.037 0.00 3.57 39.45 3.01
481 483 9.477484 CTTACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
484 486 9.826574 ACAAAGTCATACAACAGTAAGACTAAA 57.173 29.630 12.21 0.00 42.62 1.85
486 488 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
487 489 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
488 490 6.034683 GTCATACAACAGTAAGACTAAAGCCG 59.965 42.308 4.35 0.00 34.99 5.52
489 491 4.332428 ACAACAGTAAGACTAAAGCCGT 57.668 40.909 0.00 0.00 0.00 5.68
490 492 4.304939 ACAACAGTAAGACTAAAGCCGTC 58.695 43.478 0.00 0.00 0.00 4.79
491 493 3.213249 ACAGTAAGACTAAAGCCGTCG 57.787 47.619 0.00 0.00 36.53 5.12
492 494 2.555757 ACAGTAAGACTAAAGCCGTCGT 59.444 45.455 0.00 0.00 36.53 4.34
493 495 3.169733 CAGTAAGACTAAAGCCGTCGTC 58.830 50.000 0.00 0.00 36.53 4.20
494 496 3.080319 AGTAAGACTAAAGCCGTCGTCT 58.920 45.455 0.00 0.00 38.29 4.18
495 497 4.093998 CAGTAAGACTAAAGCCGTCGTCTA 59.906 45.833 0.00 0.00 35.82 2.59
496 498 4.697352 AGTAAGACTAAAGCCGTCGTCTAA 59.303 41.667 0.00 0.00 35.82 2.10
497 499 3.761311 AGACTAAAGCCGTCGTCTAAG 57.239 47.619 0.00 0.00 35.15 2.18
498 500 2.159407 AGACTAAAGCCGTCGTCTAAGC 60.159 50.000 0.00 0.00 35.15 3.09
499 501 1.542915 ACTAAAGCCGTCGTCTAAGCA 59.457 47.619 0.00 0.00 0.00 3.91
500 502 2.029649 ACTAAAGCCGTCGTCTAAGCAA 60.030 45.455 0.00 0.00 0.00 3.91
501 503 1.145803 AAAGCCGTCGTCTAAGCAAC 58.854 50.000 0.00 0.00 0.00 4.17
502 504 0.032952 AAGCCGTCGTCTAAGCAACA 59.967 50.000 0.00 0.00 0.00 3.33
503 505 0.032952 AGCCGTCGTCTAAGCAACAA 59.967 50.000 0.00 0.00 0.00 2.83
504 506 0.863144 GCCGTCGTCTAAGCAACAAA 59.137 50.000 0.00 0.00 0.00 2.83
505 507 1.398071 GCCGTCGTCTAAGCAACAAAC 60.398 52.381 0.00 0.00 0.00 2.93
506 508 2.132762 CCGTCGTCTAAGCAACAAACT 58.867 47.619 0.00 0.00 0.00 2.66
507 509 2.096909 CCGTCGTCTAAGCAACAAACTG 60.097 50.000 0.00 0.00 0.00 3.16
508 510 2.538449 CGTCGTCTAAGCAACAAACTGT 59.462 45.455 0.00 0.00 0.00 3.55
509 511 3.361724 CGTCGTCTAAGCAACAAACTGTC 60.362 47.826 0.00 0.00 0.00 3.51
510 512 2.792674 TCGTCTAAGCAACAAACTGTCG 59.207 45.455 0.00 0.00 0.00 4.35
511 513 2.659291 CGTCTAAGCAACAAACTGTCGC 60.659 50.000 0.00 0.00 28.57 5.19
512 514 2.544267 GTCTAAGCAACAAACTGTCGCT 59.456 45.455 0.00 0.00 43.41 4.93
513 515 3.739300 GTCTAAGCAACAAACTGTCGCTA 59.261 43.478 0.00 0.00 40.17 4.26
514 516 3.739300 TCTAAGCAACAAACTGTCGCTAC 59.261 43.478 0.00 0.00 40.17 3.58
515 517 1.948104 AGCAACAAACTGTCGCTACA 58.052 45.000 0.00 0.00 39.13 2.74
516 518 1.597663 AGCAACAAACTGTCGCTACAC 59.402 47.619 0.00 0.00 39.13 2.90
517 519 1.333791 GCAACAAACTGTCGCTACACC 60.334 52.381 0.00 0.00 25.48 4.16
518 520 2.210116 CAACAAACTGTCGCTACACCT 58.790 47.619 0.00 0.00 0.00 4.00
519 521 3.386486 CAACAAACTGTCGCTACACCTA 58.614 45.455 0.00 0.00 0.00 3.08
520 522 3.955650 ACAAACTGTCGCTACACCTAT 57.044 42.857 0.00 0.00 0.00 2.57
521 523 3.846360 ACAAACTGTCGCTACACCTATC 58.154 45.455 0.00 0.00 0.00 2.08
522 524 3.187700 CAAACTGTCGCTACACCTATCC 58.812 50.000 0.00 0.00 0.00 2.59
523 525 2.139323 ACTGTCGCTACACCTATCCA 57.861 50.000 0.00 0.00 0.00 3.41
524 526 2.025155 ACTGTCGCTACACCTATCCAG 58.975 52.381 0.00 0.00 0.00 3.86
525 527 2.025155 CTGTCGCTACACCTATCCAGT 58.975 52.381 0.00 0.00 0.00 4.00
526 528 2.427453 CTGTCGCTACACCTATCCAGTT 59.573 50.000 0.00 0.00 0.00 3.16
527 529 2.165641 TGTCGCTACACCTATCCAGTTG 59.834 50.000 0.00 0.00 0.00 3.16
528 530 2.426024 GTCGCTACACCTATCCAGTTGA 59.574 50.000 0.00 0.00 0.00 3.18
529 531 3.068307 GTCGCTACACCTATCCAGTTGAT 59.932 47.826 0.00 0.00 37.49 2.57
530 532 3.068165 TCGCTACACCTATCCAGTTGATG 59.932 47.826 0.00 0.00 34.76 3.07
531 533 3.068165 CGCTACACCTATCCAGTTGATGA 59.932 47.826 0.00 0.00 34.76 2.92
532 534 4.441495 CGCTACACCTATCCAGTTGATGAA 60.441 45.833 0.00 0.00 34.76 2.57
533 535 5.053145 GCTACACCTATCCAGTTGATGAAG 58.947 45.833 0.00 0.00 34.76 3.02
534 536 4.494091 ACACCTATCCAGTTGATGAAGG 57.506 45.455 0.00 0.00 34.76 3.46
535 537 3.200825 ACACCTATCCAGTTGATGAAGGG 59.799 47.826 0.00 0.00 34.76 3.95
536 538 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
537 539 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
538 540 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
539 541 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
540 542 1.675310 CAGTTGATGAAGGGGCGCA 60.675 57.895 10.83 0.00 0.00 6.09
541 543 1.377725 AGTTGATGAAGGGGCGCAG 60.378 57.895 10.83 0.00 0.00 5.18
542 544 1.377202 GTTGATGAAGGGGCGCAGA 60.377 57.895 10.83 0.00 0.00 4.26
543 545 0.749454 GTTGATGAAGGGGCGCAGAT 60.749 55.000 10.83 0.00 0.00 2.90
544 546 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
545 547 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
546 548 0.952984 GATGAAGGGGCGCAGATAGC 60.953 60.000 10.83 0.00 40.87 2.97
554 556 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
555 557 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
556 558 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
557 559 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
558 560 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
559 561 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
560 562 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
561 563 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
562 564 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
563 565 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
564 566 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
565 567 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
566 568 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
567 569 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
568 570 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
569 571 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
570 572 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
571 573 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
572 574 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
573 575 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
574 576 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
575 577 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
576 578 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
577 579 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
578 580 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
579 581 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
580 582 0.877071 AAACAGACATCGCAGCCAAG 59.123 50.000 0.00 0.00 0.00 3.61
581 583 1.580845 AACAGACATCGCAGCCAAGC 61.581 55.000 0.00 0.00 0.00 4.01
605 607 6.352516 CCCTGAATAACTATATCTGCCATCC 58.647 44.000 0.00 0.00 0.00 3.51
610 612 3.121929 ACTATATCTGCCATCCCGGAT 57.878 47.619 0.73 0.00 36.56 4.18
612 614 1.956869 ATATCTGCCATCCCGGATGA 58.043 50.000 26.49 8.82 42.09 2.92
616 618 1.077787 TGCCATCCCGGATGACAAC 60.078 57.895 26.49 13.89 42.09 3.32
622 624 4.207165 CCATCCCGGATGACAACTAAATT 58.793 43.478 26.49 0.00 42.09 1.82
653 655 1.379527 GGTACCTAATGTGGCTGTGC 58.620 55.000 4.06 0.00 0.00 4.57
672 674 1.586154 CCAGGACGTGTGGGCATTTC 61.586 60.000 0.00 0.00 0.00 2.17
703 712 2.240279 GCGGGTGGAGATGAGTAGTAT 58.760 52.381 0.00 0.00 0.00 2.12
713 722 5.428253 GAGATGAGTAGTATTTGTTGGGCA 58.572 41.667 0.00 0.00 0.00 5.36
718 727 4.016444 AGTAGTATTTGTTGGGCATGTGG 58.984 43.478 0.00 0.00 0.00 4.17
745 755 2.899345 TAGCTGCGCCACACGTATGG 62.899 60.000 8.99 8.99 46.11 2.74
761 771 6.876789 ACACGTATGGACAATTCTAATGTTCA 59.123 34.615 0.00 0.00 40.44 3.18
770 782 5.241506 ACAATTCTAATGTTCACCCACACAG 59.758 40.000 0.00 0.00 0.00 3.66
805 817 2.125713 CCGCTCACGCCATACACA 60.126 61.111 0.00 0.00 38.22 3.72
806 818 1.739929 CCGCTCACGCCATACACAA 60.740 57.895 0.00 0.00 38.22 3.33
867 883 2.095212 GGCGTCCAAGAAGAAATGGTTC 60.095 50.000 0.00 0.00 37.94 3.62
868 884 2.412847 GCGTCCAAGAAGAAATGGTTCG 60.413 50.000 0.00 0.00 38.90 3.95
869 885 2.159627 CGTCCAAGAAGAAATGGTTCGG 59.840 50.000 0.00 0.00 38.90 4.30
1219 1236 6.661740 TTTTAGCTTCCCCTAATCCCTTAA 57.338 37.500 0.00 0.00 0.00 1.85
1220 1237 5.906772 TTAGCTTCCCCTAATCCCTTAAG 57.093 43.478 0.00 0.00 0.00 1.85
1221 1238 3.749036 AGCTTCCCCTAATCCCTTAAGT 58.251 45.455 0.97 0.00 0.00 2.24
1222 1239 4.904373 AGCTTCCCCTAATCCCTTAAGTA 58.096 43.478 0.97 0.00 0.00 2.24
1267 1284 2.865343 AGTAATCTTACCCGTGCGAG 57.135 50.000 0.00 0.00 34.19 5.03
1284 1301 1.377536 GAGTTTCTGGATGCAGCTCC 58.622 55.000 9.76 0.00 35.74 4.70
1446 1464 6.645003 GCCCAAATGTTCCAGTAAAACTTAAG 59.355 38.462 0.00 0.00 0.00 1.85
1467 1485 2.864343 GGCTAGCAAAATCGTACGATGT 59.136 45.455 30.01 22.97 34.70 3.06
1473 1491 4.081761 GCAAAATCGTACGATGTGTTCAG 58.918 43.478 30.01 16.89 34.70 3.02
1474 1492 4.143200 GCAAAATCGTACGATGTGTTCAGA 60.143 41.667 30.01 0.00 34.70 3.27
1475 1493 5.445939 GCAAAATCGTACGATGTGTTCAGAT 60.446 40.000 30.01 9.39 34.70 2.90
1476 1494 6.534059 CAAAATCGTACGATGTGTTCAGATT 58.466 36.000 30.01 14.75 34.70 2.40
1478 1496 4.428615 TCGTACGATGTGTTCAGATTGA 57.571 40.909 15.28 0.00 0.00 2.57
1479 1497 4.993905 TCGTACGATGTGTTCAGATTGAT 58.006 39.130 15.28 0.00 0.00 2.57
1480 1498 5.407502 TCGTACGATGTGTTCAGATTGATT 58.592 37.500 15.28 0.00 0.00 2.57
1755 1773 5.533903 ACCTGAATATATTGCTCAAAGCTGG 59.466 40.000 1.78 2.39 42.97 4.85
1764 1782 1.688772 CTCAAAGCTGGCCATATGCT 58.311 50.000 12.02 12.02 40.92 3.79
1775 1797 2.424557 GCCATATGCTGAGTGATCCTG 58.575 52.381 0.00 0.00 36.87 3.86
1865 1892 8.658609 CGAAAACAATACCTCCGTAAAGAAATA 58.341 33.333 0.00 0.00 0.00 1.40
1873 1900 6.214399 ACCTCCGTAAAGAAATATAAGAGCG 58.786 40.000 0.00 0.00 0.00 5.03
1876 1903 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1879 1906 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1911 2112 4.322057 AGGGTCAACCAAGAAAGCATAT 57.678 40.909 0.89 0.00 43.89 1.78
1980 2181 5.527582 GGAAACACAAGCAAAAGAGAGACTA 59.472 40.000 0.00 0.00 0.00 2.59
1982 2183 7.391148 AAACACAAGCAAAAGAGAGACTAAA 57.609 32.000 0.00 0.00 0.00 1.85
1989 2190 5.240403 AGCAAAAGAGAGACTAAAAAGGCAG 59.760 40.000 0.00 0.00 0.00 4.85
1997 2198 6.071320 AGAGACTAAAAAGGCAGGAAAATGT 58.929 36.000 0.00 0.00 0.00 2.71
2012 2213 0.330604 AATGTGGCAGAGGACAGCAT 59.669 50.000 0.00 0.00 27.55 3.79
2032 2233 2.726821 TGGAGGCAAATTCATCAGTCC 58.273 47.619 0.00 0.00 0.00 3.85
2048 2249 0.037605 GTCCCCGAGTACACCAACAG 60.038 60.000 0.00 0.00 0.00 3.16
2054 2255 0.868406 GAGTACACCAACAGCAGCAC 59.132 55.000 0.00 0.00 0.00 4.40
2055 2256 0.469917 AGTACACCAACAGCAGCACT 59.530 50.000 0.00 0.00 0.00 4.40
2079 2280 2.618053 GAAACCACGGACACAGGATAG 58.382 52.381 0.00 0.00 0.00 2.08
2110 2311 0.179000 ATCATCGAGGAACTGCACCC 59.821 55.000 2.91 0.00 41.55 4.61
2120 2321 3.305516 CTGCACCCAAACCAGCCC 61.306 66.667 0.00 0.00 0.00 5.19
2309 2511 5.133322 AGACCATGATGGAGTGTAAATGGAT 59.867 40.000 20.11 0.00 40.96 3.41
2336 2538 3.853671 CACACAGCTTCAAGTTGACAAAC 59.146 43.478 8.44 0.00 36.47 2.93
2371 2573 0.673437 AGTGGCCGGACAAACAATTG 59.327 50.000 14.43 3.24 42.46 2.32
2402 2604 2.159462 CGCTTGGCAAAAAGAGGAGATC 60.159 50.000 0.00 0.00 0.00 2.75
2403 2605 2.159462 GCTTGGCAAAAAGAGGAGATCG 60.159 50.000 0.00 0.00 0.00 3.69
2404 2606 1.453155 TGGCAAAAAGAGGAGATCGC 58.547 50.000 0.00 0.00 0.00 4.58
2405 2607 0.735471 GGCAAAAAGAGGAGATCGCC 59.265 55.000 7.52 7.52 0.00 5.54
2406 2608 1.680249 GGCAAAAAGAGGAGATCGCCT 60.680 52.381 18.95 18.95 42.17 5.52
2622 2837 2.372074 ACCACCACCACCGAACACT 61.372 57.895 0.00 0.00 0.00 3.55
2661 2876 4.024893 CGCAGTAATGATAGCCGTCATTTT 60.025 41.667 16.48 6.18 44.23 1.82
2797 3013 0.380378 GTTGCAACGAGCTCCACAAA 59.620 50.000 14.90 0.00 45.94 2.83
2905 3121 1.771746 AGATCCCCACCGGCATGAT 60.772 57.895 0.00 0.00 0.00 2.45
2986 3202 1.667724 GCCATCACAGAAACCAGATCG 59.332 52.381 0.00 0.00 0.00 3.69
3117 3334 2.031919 TGAACAACCGCATCCGCT 59.968 55.556 0.00 0.00 35.30 5.52
3125 3342 3.536917 CGCATCCGCTACTCCCCA 61.537 66.667 0.00 0.00 35.30 4.96
3144 3361 2.046892 GCAGCGAGGAAGAAGGCA 60.047 61.111 0.00 0.00 0.00 4.75
3248 3465 2.994699 CCAATACCCCACGAGCCA 59.005 61.111 0.00 0.00 0.00 4.75
3296 3513 2.124819 CAGAGCTGCGCCTGGATT 60.125 61.111 4.18 0.00 0.00 3.01
3412 3629 4.451900 ACATCTTGGCTTAATAGGAACGG 58.548 43.478 0.00 0.00 0.00 4.44
3492 3709 2.290641 CTCAAAGTTAAGCGTGCTTGGT 59.709 45.455 16.98 0.00 37.47 3.67
3513 3730 4.222810 GGTTTGGAGCAATTTAAGGATGGT 59.777 41.667 0.00 0.00 0.00 3.55
3626 3843 1.140375 CCCGCTAGGTGTAACGGTC 59.860 63.158 0.00 0.00 44.14 4.79
3645 3862 2.511900 GGAACCGGTGGTTGTGGA 59.488 61.111 8.52 0.00 46.95 4.02
3706 3924 4.096984 AGTGTTAAGCTTCATGCATTAGCC 59.903 41.667 21.24 10.59 45.94 3.93
3817 4074 1.800032 GCAAAATCGGATCCGCACA 59.200 52.632 29.62 13.23 39.59 4.57
3952 4217 1.350351 ACTTCAACAGCCAGATCTGCT 59.650 47.619 17.76 14.57 40.41 4.24
4071 4336 9.841295 AGTTACTCCAGTTTACTTTGTCATTTA 57.159 29.630 0.00 0.00 0.00 1.40
4515 4782 1.027357 ATGGCATGTCGATCTTTGCC 58.973 50.000 18.41 18.41 42.28 4.52
4646 4931 2.173569 GAGGTAGGAACTGGCATTGGAT 59.826 50.000 0.00 0.00 41.52 3.41
4886 5171 3.632145 CCTTTGGTGCTCTACTGTTTGTT 59.368 43.478 0.00 0.00 0.00 2.83
5278 5737 6.744112 TGAAATGGTTTTGGTTGACACTATC 58.256 36.000 0.00 0.00 0.00 2.08
5287 5746 8.755018 GTTTTGGTTGACACTATCTCAAATTTG 58.245 33.333 12.15 12.15 29.44 2.32
5610 7625 4.509970 TGTGTATTGTATATGTTGCGCTCC 59.490 41.667 9.73 0.00 0.00 4.70
5612 7627 5.236478 GTGTATTGTATATGTTGCGCTCCTT 59.764 40.000 9.73 0.00 0.00 3.36
5746 7763 6.148811 CCATCTTTTGTTGTTACAGGTACGAT 59.851 38.462 0.00 0.00 35.28 3.73
5801 7818 3.334691 TCAGATGCTAAACAAGGGAACG 58.665 45.455 0.00 0.00 0.00 3.95
6134 8154 7.121020 TGTTCTATGCTCATGTTTGCTTAATCA 59.879 33.333 0.00 0.00 0.00 2.57
6147 8167 8.239314 TGTTTGCTTAATCATCATTTCTCACTC 58.761 33.333 0.00 0.00 0.00 3.51
6150 8170 6.478016 TGCTTAATCATCATTTCTCACTCGAG 59.522 38.462 11.84 11.84 40.98 4.04
6206 8226 5.605534 TGTATCTCCTGCTTATTTGAGCTC 58.394 41.667 6.82 6.82 43.11 4.09
6280 8300 2.884012 TGCAGGTTACAGTGATTGGTTG 59.116 45.455 0.00 0.00 0.00 3.77
6378 8398 7.112122 TGTACATCTGAATGCCTTTTATCACT 58.888 34.615 0.00 0.00 36.26 3.41
6446 8466 8.879427 ATTACCTTATAAAGTTTGCCAACTCT 57.121 30.769 3.30 0.00 42.89 3.24
6577 8597 6.763610 TGTCATCATATGGTGCAAAATACGTA 59.236 34.615 11.35 0.00 0.00 3.57
6658 8678 3.395639 CCGGTAGTTACTGCTGTCAAAA 58.604 45.455 8.38 0.00 0.00 2.44
6806 8826 2.392662 TCTCTGATAGGTTCCCTGCTG 58.607 52.381 0.00 0.00 34.61 4.41
7006 9029 6.093771 GCTCATATGCTGCTAGCTGATATTTT 59.906 38.462 24.19 7.05 42.97 1.82
7007 9030 7.361885 GCTCATATGCTGCTAGCTGATATTTTT 60.362 37.037 24.19 3.83 42.97 1.94
7204 9227 6.801539 AAGACTTTGCGATAATGTCTTTCA 57.198 33.333 19.28 0.00 42.93 2.69
7214 9237 6.034683 GCGATAATGTCTTTCACGTTTCTAGT 59.965 38.462 0.00 0.00 35.68 2.57
7269 9295 6.804677 TCTTTGCACAATGAACACAATAGTT 58.195 32.000 0.00 0.00 0.00 2.24
7348 9376 5.440610 AGCTGAACTGAAAGAAAAAGGAGA 58.559 37.500 0.00 0.00 37.43 3.71
7349 9377 5.298026 AGCTGAACTGAAAGAAAAAGGAGAC 59.702 40.000 0.00 0.00 37.43 3.36
7350 9378 5.066505 GCTGAACTGAAAGAAAAAGGAGACA 59.933 40.000 0.00 0.00 37.43 3.41
7352 9380 7.088589 TGAACTGAAAGAAAAAGGAGACAAG 57.911 36.000 0.00 0.00 37.43 3.16
7353 9381 5.506686 ACTGAAAGAAAAAGGAGACAAGC 57.493 39.130 0.00 0.00 37.43 4.01
7504 9532 9.761504 CTCATGTGTTCATATTATGAGTCTCTT 57.238 33.333 6.48 0.00 40.94 2.85
7553 9581 7.119116 CCTTTCATAGTGTTATAAGTGTGTGCA 59.881 37.037 0.00 0.00 0.00 4.57
7599 9627 2.083167 AAAACCCATGCAGCAAATCG 57.917 45.000 0.00 0.00 0.00 3.34
7841 9872 0.465460 AAAGTGTGCCGCCTTTCTGA 60.465 50.000 0.00 0.00 0.00 3.27
7877 9908 4.523083 TCCCTCCGTTCCAAAATAGATTG 58.477 43.478 0.00 0.00 0.00 2.67
7886 9917 7.083858 CGTTCCAAAATAGATTGCAGAGAAAA 58.916 34.615 0.00 0.00 0.00 2.29
7899 9930 4.919168 TGCAGAGAAAATTTGATTGCGAAG 59.081 37.500 0.00 0.00 33.03 3.79
7960 9991 4.855340 TCACCAATCAAAATACTCCCTCC 58.145 43.478 0.00 0.00 0.00 4.30
8167 10198 8.931775 AGTTTGTAATGTTTGACTTTTGGAAAC 58.068 29.630 0.00 0.00 0.00 2.78
8176 10207 8.286800 TGTTTGACTTTTGGAAACATCTATACG 58.713 33.333 0.00 0.00 42.32 3.06
8181 10212 5.794687 TTTGGAAACATCTATACGCACTG 57.205 39.130 0.00 0.00 42.32 3.66
8188 10219 7.330946 GGAAACATCTATACGCACTGCATTATA 59.669 37.037 1.11 1.22 0.00 0.98
8189 10220 8.601845 AAACATCTATACGCACTGCATTATAA 57.398 30.769 1.11 0.00 0.00 0.98
8192 10223 9.219603 ACATCTATACGCACTGCATTATAAAAT 57.780 29.630 1.11 0.00 0.00 1.82
8257 10288 7.600752 AGAAGTTTGACTCAGCACTATCTAAAC 59.399 37.037 0.00 0.00 0.00 2.01
8421 13672 7.307573 GCTCAAAATTTATTTTCAAGCAGCACT 60.308 33.333 18.10 0.00 41.06 4.40
8435 13686 5.613358 AGCAGCACTATTGTTAGTTTCAC 57.387 39.130 0.00 0.00 36.50 3.18
8442 13693 6.649557 GCACTATTGTTAGTTTCACTGGTACT 59.350 38.462 0.00 0.00 36.50 2.73
8563 13814 4.019860 ACATGAACTCAGAGGTGCATAGTT 60.020 41.667 0.00 0.00 34.00 2.24
8564 13815 5.187772 ACATGAACTCAGAGGTGCATAGTTA 59.812 40.000 0.00 0.00 34.00 2.24
8565 13816 5.330455 TGAACTCAGAGGTGCATAGTTAG 57.670 43.478 1.53 0.00 30.83 2.34
8566 13817 4.772624 TGAACTCAGAGGTGCATAGTTAGT 59.227 41.667 1.53 0.00 30.83 2.24
8742 13993 2.384828 TGCCCACGAGATACATACTGT 58.615 47.619 0.00 0.00 0.00 3.55
8747 13998 5.634020 GCCCACGAGATACATACTGTAATTC 59.366 44.000 0.00 0.00 36.31 2.17
8748 13999 5.856986 CCCACGAGATACATACTGTAATTCG 59.143 44.000 15.86 15.86 42.78 3.34
8749 14000 6.436261 CCACGAGATACATACTGTAATTCGT 58.564 40.000 16.71 16.71 46.66 3.85
8750 14001 6.916387 CCACGAGATACATACTGTAATTCGTT 59.084 38.462 18.48 8.49 45.12 3.85
8751 14002 7.096599 CCACGAGATACATACTGTAATTCGTTG 60.097 40.741 18.48 14.42 45.12 4.10
8752 14003 7.431376 CACGAGATACATACTGTAATTCGTTGT 59.569 37.037 18.48 2.41 45.12 3.32
8753 14004 7.431376 ACGAGATACATACTGTAATTCGTTGTG 59.569 37.037 16.71 0.00 45.12 3.33
8754 14005 7.096599 CGAGATACATACTGTAATTCGTTGTGG 60.097 40.741 12.06 0.00 37.66 4.17
8755 14006 7.553334 AGATACATACTGTAATTCGTTGTGGT 58.447 34.615 0.00 0.00 36.31 4.16
8756 14007 5.856126 ACATACTGTAATTCGTTGTGGTG 57.144 39.130 0.00 0.00 0.00 4.17
8757 14008 5.302360 ACATACTGTAATTCGTTGTGGTGT 58.698 37.500 0.00 0.00 0.00 4.16
8758 14009 5.761234 ACATACTGTAATTCGTTGTGGTGTT 59.239 36.000 0.00 0.00 0.00 3.32
8759 14010 4.806342 ACTGTAATTCGTTGTGGTGTTC 57.194 40.909 0.00 0.00 0.00 3.18
8760 14011 4.193090 ACTGTAATTCGTTGTGGTGTTCA 58.807 39.130 0.00 0.00 0.00 3.18
8761 14012 4.819630 ACTGTAATTCGTTGTGGTGTTCAT 59.180 37.500 0.00 0.00 0.00 2.57
8762 14013 5.298276 ACTGTAATTCGTTGTGGTGTTCATT 59.702 36.000 0.00 0.00 0.00 2.57
8763 14014 5.515184 TGTAATTCGTTGTGGTGTTCATTG 58.485 37.500 0.00 0.00 0.00 2.82
8764 14015 4.647424 AATTCGTTGTGGTGTTCATTGT 57.353 36.364 0.00 0.00 0.00 2.71
8765 14016 4.647424 ATTCGTTGTGGTGTTCATTGTT 57.353 36.364 0.00 0.00 0.00 2.83
8766 14017 4.442375 TTCGTTGTGGTGTTCATTGTTT 57.558 36.364 0.00 0.00 0.00 2.83
8767 14018 4.442375 TCGTTGTGGTGTTCATTGTTTT 57.558 36.364 0.00 0.00 0.00 2.43
8768 14019 4.169508 TCGTTGTGGTGTTCATTGTTTTG 58.830 39.130 0.00 0.00 0.00 2.44
8769 14020 3.923461 CGTTGTGGTGTTCATTGTTTTGT 59.077 39.130 0.00 0.00 0.00 2.83
8770 14021 4.387256 CGTTGTGGTGTTCATTGTTTTGTT 59.613 37.500 0.00 0.00 0.00 2.83
8771 14022 5.573282 CGTTGTGGTGTTCATTGTTTTGTTA 59.427 36.000 0.00 0.00 0.00 2.41
8772 14023 6.089551 CGTTGTGGTGTTCATTGTTTTGTTAA 59.910 34.615 0.00 0.00 0.00 2.01
8773 14024 6.952935 TGTGGTGTTCATTGTTTTGTTAAC 57.047 33.333 0.00 0.00 0.00 2.01
8774 14025 5.573282 TGTGGTGTTCATTGTTTTGTTAACG 59.427 36.000 0.26 0.00 0.00 3.18
8775 14026 5.573669 GTGGTGTTCATTGTTTTGTTAACGT 59.426 36.000 0.26 0.00 0.00 3.99
8776 14027 6.746364 GTGGTGTTCATTGTTTTGTTAACGTA 59.254 34.615 0.26 0.00 0.00 3.57
8777 14028 7.432838 GTGGTGTTCATTGTTTTGTTAACGTAT 59.567 33.333 0.26 0.00 0.00 3.06
8778 14029 7.974501 TGGTGTTCATTGTTTTGTTAACGTATT 59.025 29.630 0.26 0.00 0.00 1.89
8779 14030 8.809478 GGTGTTCATTGTTTTGTTAACGTATTT 58.191 29.630 0.26 0.00 0.00 1.40
8780 14031 9.613153 GTGTTCATTGTTTTGTTAACGTATTTG 57.387 29.630 0.26 0.00 0.00 2.32
8781 14032 9.569167 TGTTCATTGTTTTGTTAACGTATTTGA 57.431 25.926 0.26 0.00 0.00 2.69
8783 14034 8.789881 TCATTGTTTTGTTAACGTATTTGAGG 57.210 30.769 0.26 0.00 0.00 3.86
8784 14035 7.380065 TCATTGTTTTGTTAACGTATTTGAGGC 59.620 33.333 0.26 0.00 0.00 4.70
8785 14036 6.380095 TGTTTTGTTAACGTATTTGAGGCT 57.620 33.333 0.26 0.00 0.00 4.58
8786 14037 6.797454 TGTTTTGTTAACGTATTTGAGGCTT 58.203 32.000 0.26 0.00 0.00 4.35
9187 14440 8.285776 GCACAGGAAATATACAAACATAATGC 57.714 34.615 0.00 0.00 0.00 3.56
9267 14520 3.557577 TTGTCATTCCGTGCTCAATTG 57.442 42.857 0.00 0.00 0.00 2.32
9285 14538 2.556144 TGTGCTCAAGCTGTTCTCAT 57.444 45.000 3.32 0.00 42.66 2.90
9313 14778 0.956633 AAGTGCCAGCTGATGTGTTG 59.043 50.000 17.39 0.00 0.00 3.33
9353 14818 8.779303 CAAACACACACAAGTATATTGGAGTAA 58.221 33.333 0.00 0.00 0.00 2.24
9387 14852 8.644374 TTAGTTTATGCTGGTATTTTGGAGTT 57.356 30.769 0.00 0.00 0.00 3.01
9388 14853 7.158099 AGTTTATGCTGGTATTTTGGAGTTC 57.842 36.000 0.00 0.00 0.00 3.01
9389 14854 6.948309 AGTTTATGCTGGTATTTTGGAGTTCT 59.052 34.615 0.00 0.00 0.00 3.01
9390 14855 6.757897 TTATGCTGGTATTTTGGAGTTCTG 57.242 37.500 0.00 0.00 0.00 3.02
9391 14856 4.098914 TGCTGGTATTTTGGAGTTCTGT 57.901 40.909 0.00 0.00 0.00 3.41
9392 14857 5.235850 TGCTGGTATTTTGGAGTTCTGTA 57.764 39.130 0.00 0.00 0.00 2.74
9393 14858 5.001232 TGCTGGTATTTTGGAGTTCTGTAC 58.999 41.667 0.00 0.00 0.00 2.90
9394 14859 5.221843 TGCTGGTATTTTGGAGTTCTGTACT 60.222 40.000 0.00 0.00 40.71 2.73
9395 14860 6.014070 TGCTGGTATTTTGGAGTTCTGTACTA 60.014 38.462 0.00 0.00 37.17 1.82
9396 14861 6.313164 GCTGGTATTTTGGAGTTCTGTACTAC 59.687 42.308 0.00 0.00 37.17 2.73
9397 14862 7.549147 TGGTATTTTGGAGTTCTGTACTACT 57.451 36.000 0.00 0.00 38.64 2.57
9398 14863 7.609056 TGGTATTTTGGAGTTCTGTACTACTC 58.391 38.462 12.19 12.19 38.64 2.59
9404 14869 2.944349 GAGTTCTGTACTACTCCCTCCG 59.056 54.545 10.42 0.00 37.17 4.63
9405 14870 2.308275 AGTTCTGTACTACTCCCTCCGT 59.692 50.000 0.00 0.00 34.56 4.69
9406 14871 3.087781 GTTCTGTACTACTCCCTCCGTT 58.912 50.000 0.00 0.00 0.00 4.44
9407 14872 2.996631 TCTGTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
9408 14873 2.022934 CTGTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
9409 14874 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
9410 14875 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
9411 14876 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
9412 14877 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
9413 14878 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
9414 14879 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
9415 14880 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
9416 14881 5.901276 ACTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
9417 14882 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
9418 14883 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
9419 14884 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
9420 14885 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
9421 14886 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
9422 14887 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
9423 14888 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
9424 14889 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
9425 14890 8.520351 CCTCCGTTCCAAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
9443 14908 9.660180 AGTCTTTTTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
9444 14909 9.660180 GTCTTTTTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
9451 14916 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
9452 14917 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
9453 14918 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
9454 14919 6.971726 TTTCACTATGGACTACATACGGAT 57.028 37.500 0.00 0.00 41.03 4.18
9455 14920 5.959618 TCACTATGGACTACATACGGATG 57.040 43.478 5.94 5.94 41.03 3.51
9457 14922 6.536447 TCACTATGGACTACATACGGATGTA 58.464 40.000 19.32 19.32 44.77 2.29
9458 14923 7.173032 TCACTATGGACTACATACGGATGTAT 58.827 38.462 20.64 9.39 45.42 2.29
9459 14924 8.323567 TCACTATGGACTACATACGGATGTATA 58.676 37.037 20.64 10.04 45.42 1.47
9460 14925 9.121658 CACTATGGACTACATACGGATGTATAT 57.878 37.037 20.64 12.15 45.42 0.86
9464 14929 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
9465 14930 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
9466 14931 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
9498 14963 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
9499 14964 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
9500 14965 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
9501 14966 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
9502 14967 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
9503 14968 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
9504 14969 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
9505 14970 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
9506 14971 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
9507 14972 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
9508 14973 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
9509 14974 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
9510 14975 4.565166 TCATTTTGCTTCGTATGTAGTCCG 59.435 41.667 0.00 0.00 0.00 4.79
9511 14976 3.581024 TTTGCTTCGTATGTAGTCCGT 57.419 42.857 0.00 0.00 0.00 4.69
9512 14977 4.700268 TTTGCTTCGTATGTAGTCCGTA 57.300 40.909 0.00 0.00 0.00 4.02
9513 14978 3.957671 TGCTTCGTATGTAGTCCGTAG 57.042 47.619 0.00 0.00 0.00 3.51
9514 14979 3.273434 TGCTTCGTATGTAGTCCGTAGT 58.727 45.455 0.00 0.00 0.00 2.73
9515 14980 3.064408 TGCTTCGTATGTAGTCCGTAGTG 59.936 47.826 0.00 0.00 0.00 2.74
9516 14981 3.547613 GCTTCGTATGTAGTCCGTAGTGG 60.548 52.174 0.00 0.00 40.09 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.740868 CACGCACATGGACTAGGTGG 60.741 60.000 5.74 0.00 41.23 4.61
1 2 0.037326 ACACGCACATGGACTAGGTG 60.037 55.000 0.00 0.00 43.66 4.00
2 3 0.037326 CACACGCACATGGACTAGGT 60.037 55.000 0.00 0.00 0.00 3.08
25 26 1.268539 CGTGTGGGTGAAAAGCAGTTC 60.269 52.381 0.00 0.00 0.00 3.01
31 32 1.597663 GAGTGTCGTGTGGGTGAAAAG 59.402 52.381 0.00 0.00 0.00 2.27
35 36 0.178984 TAGGAGTGTCGTGTGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
39 40 2.288825 ACAATGTAGGAGTGTCGTGTGG 60.289 50.000 0.00 0.00 0.00 4.17
45 46 3.941483 CCATCCAACAATGTAGGAGTGTC 59.059 47.826 0.00 0.00 29.52 3.67
90 91 3.365969 GCCATGTGTGTTTACCTAGTTGC 60.366 47.826 0.00 0.00 0.00 4.17
147 148 3.501828 TGTCATGTGTGTTTATCTGGTGC 59.498 43.478 0.00 0.00 0.00 5.01
207 209 2.222445 GTGTTTACCTAGTTGCCACGTG 59.778 50.000 9.08 9.08 0.00 4.49
214 216 6.708949 AGTTACCATGTGTGTTTACCTAGTTG 59.291 38.462 0.00 0.00 0.00 3.16
254 256 4.513692 GTGTGTGATTAACTACTTGCCACA 59.486 41.667 0.00 0.00 0.00 4.17
258 260 6.055231 TGTTGTGTGTGATTAACTACTTGC 57.945 37.500 0.00 0.00 0.00 4.01
341 343 4.157289 AGCATGGCAACTCTATCTGTTTTG 59.843 41.667 0.00 0.00 37.61 2.44
375 377 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
376 378 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
377 379 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
390 392 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
396 398 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
397 399 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
398 400 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
401 403 3.472943 ATCGCCCAGATGCAGAGGC 62.473 63.158 8.59 8.59 42.18 4.70
402 404 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
409 411 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
410 412 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
411 413 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
412 414 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
413 415 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
414 416 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
415 417 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
416 418 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
417 419 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
418 420 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
419 421 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
420 422 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
422 424 9.787435 TGAGAATAATTAATAAAGTGGCCGTAT 57.213 29.630 0.00 0.00 0.00 3.06
423 425 9.048446 GTGAGAATAATTAATAAAGTGGCCGTA 57.952 33.333 0.00 0.00 0.00 4.02
424 426 7.554835 TGTGAGAATAATTAATAAAGTGGCCGT 59.445 33.333 0.00 0.00 0.00 5.68
425 427 7.925993 TGTGAGAATAATTAATAAAGTGGCCG 58.074 34.615 0.00 0.00 0.00 6.13
426 428 9.736023 CTTGTGAGAATAATTAATAAAGTGGCC 57.264 33.333 0.00 0.00 0.00 5.36
438 440 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
439 441 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
440 442 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
441 443 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
442 444 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
443 445 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
444 446 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
445 447 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
446 448 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
447 449 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
448 450 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
449 451 7.226720 ACTGTTGTATGACTTTGTAAGGTCTTG 59.773 37.037 8.11 0.00 34.01 3.02
450 452 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
451 453 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
452 454 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
453 455 8.426489 TCTTACTGTTGTATGACTTTGTAAGGT 58.574 33.333 0.00 0.00 37.36 3.50
454 456 8.709646 GTCTTACTGTTGTATGACTTTGTAAGG 58.290 37.037 0.00 0.00 44.06 2.69
463 465 6.034683 CGGCTTTAGTCTTACTGTTGTATGAC 59.965 42.308 11.70 11.70 45.97 3.06
464 466 6.097356 CGGCTTTAGTCTTACTGTTGTATGA 58.903 40.000 0.00 0.00 32.61 2.15
465 467 5.867716 ACGGCTTTAGTCTTACTGTTGTATG 59.132 40.000 0.00 0.00 0.00 2.39
466 468 6.034161 ACGGCTTTAGTCTTACTGTTGTAT 57.966 37.500 0.00 0.00 0.00 2.29
467 469 5.458041 ACGGCTTTAGTCTTACTGTTGTA 57.542 39.130 0.00 0.00 0.00 2.41
468 470 4.304939 GACGGCTTTAGTCTTACTGTTGT 58.695 43.478 0.00 0.00 35.84 3.32
469 471 3.364023 CGACGGCTTTAGTCTTACTGTTG 59.636 47.826 0.00 0.00 36.53 3.33
470 472 3.005155 ACGACGGCTTTAGTCTTACTGTT 59.995 43.478 0.00 0.00 36.53 3.16
471 473 2.555757 ACGACGGCTTTAGTCTTACTGT 59.444 45.455 0.00 0.00 36.53 3.55
472 474 3.119919 AGACGACGGCTTTAGTCTTACTG 60.120 47.826 0.00 0.00 40.64 2.74
473 475 3.080319 AGACGACGGCTTTAGTCTTACT 58.920 45.455 0.00 0.00 40.64 2.24
474 476 3.484334 AGACGACGGCTTTAGTCTTAC 57.516 47.619 0.00 0.00 40.64 2.34
475 477 4.437930 GCTTAGACGACGGCTTTAGTCTTA 60.438 45.833 9.38 0.00 42.99 2.10
476 478 3.672781 GCTTAGACGACGGCTTTAGTCTT 60.673 47.826 9.38 0.00 42.99 3.01
477 479 2.159407 GCTTAGACGACGGCTTTAGTCT 60.159 50.000 9.38 2.05 44.90 3.24
478 480 2.183636 GCTTAGACGACGGCTTTAGTC 58.816 52.381 9.38 0.25 35.41 2.59
479 481 1.542915 TGCTTAGACGACGGCTTTAGT 59.457 47.619 9.38 0.00 0.00 2.24
480 482 2.273370 TGCTTAGACGACGGCTTTAG 57.727 50.000 9.38 8.42 0.00 1.85
481 483 2.288334 TGTTGCTTAGACGACGGCTTTA 60.288 45.455 9.38 0.00 0.00 1.85
482 484 1.145803 GTTGCTTAGACGACGGCTTT 58.854 50.000 9.38 0.00 0.00 3.51
483 485 0.032952 TGTTGCTTAGACGACGGCTT 59.967 50.000 9.38 0.00 0.00 4.35
484 486 0.032952 TTGTTGCTTAGACGACGGCT 59.967 50.000 8.97 8.97 0.00 5.52
485 487 0.863144 TTTGTTGCTTAGACGACGGC 59.137 50.000 0.00 0.00 0.00 5.68
486 488 2.096909 CAGTTTGTTGCTTAGACGACGG 60.097 50.000 0.00 0.00 0.00 4.79
487 489 2.538449 ACAGTTTGTTGCTTAGACGACG 59.462 45.455 0.00 0.00 0.00 5.12
488 490 3.361724 CGACAGTTTGTTGCTTAGACGAC 60.362 47.826 0.00 0.00 0.00 4.34
489 491 2.792674 CGACAGTTTGTTGCTTAGACGA 59.207 45.455 0.00 0.00 0.00 4.20
490 492 3.155344 CGACAGTTTGTTGCTTAGACG 57.845 47.619 0.00 0.00 0.00 4.18
498 500 2.210116 AGGTGTAGCGACAGTTTGTTG 58.790 47.619 0.00 0.00 35.82 3.33
499 501 2.614829 AGGTGTAGCGACAGTTTGTT 57.385 45.000 0.00 0.00 35.82 2.83
500 502 3.368116 GGATAGGTGTAGCGACAGTTTGT 60.368 47.826 0.00 0.00 35.82 2.83
501 503 3.187700 GGATAGGTGTAGCGACAGTTTG 58.812 50.000 0.00 0.00 35.82 2.93
502 504 2.829720 TGGATAGGTGTAGCGACAGTTT 59.170 45.455 0.00 0.00 35.82 2.66
503 505 2.427453 CTGGATAGGTGTAGCGACAGTT 59.573 50.000 0.00 0.00 35.82 3.16
504 506 2.025155 CTGGATAGGTGTAGCGACAGT 58.975 52.381 0.00 0.00 35.82 3.55
505 507 2.025155 ACTGGATAGGTGTAGCGACAG 58.975 52.381 0.00 0.00 35.82 3.51
506 508 2.139323 ACTGGATAGGTGTAGCGACA 57.861 50.000 0.00 0.00 0.00 4.35
507 509 2.426024 TCAACTGGATAGGTGTAGCGAC 59.574 50.000 0.00 0.00 42.42 5.19
508 510 2.730382 TCAACTGGATAGGTGTAGCGA 58.270 47.619 0.00 0.00 42.42 4.93
509 511 3.068165 TCATCAACTGGATAGGTGTAGCG 59.932 47.826 0.00 0.00 42.42 4.26
510 512 4.672587 TCATCAACTGGATAGGTGTAGC 57.327 45.455 0.00 0.00 42.42 3.58
511 513 5.453903 CCCTTCATCAACTGGATAGGTGTAG 60.454 48.000 0.00 0.00 42.42 2.74
512 514 4.408921 CCCTTCATCAACTGGATAGGTGTA 59.591 45.833 0.00 0.00 42.42 2.90
513 515 3.200825 CCCTTCATCAACTGGATAGGTGT 59.799 47.826 0.00 0.00 42.42 4.16
514 516 3.434167 CCCCTTCATCAACTGGATAGGTG 60.434 52.174 0.00 0.00 43.21 4.00
515 517 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
516 518 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
517 519 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
518 520 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
519 521 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
520 522 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
521 523 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
522 524 1.651240 CTGCGCCCCTTCATCAACTG 61.651 60.000 4.18 0.00 0.00 3.16
523 525 1.377725 CTGCGCCCCTTCATCAACT 60.378 57.895 4.18 0.00 0.00 3.16
524 526 0.749454 ATCTGCGCCCCTTCATCAAC 60.749 55.000 4.18 0.00 0.00 3.18
525 527 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
526 528 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
527 529 0.952984 GCTATCTGCGCCCCTTCATC 60.953 60.000 4.18 0.00 0.00 2.92
528 530 1.072159 GCTATCTGCGCCCCTTCAT 59.928 57.895 4.18 0.00 0.00 2.57
529 531 2.505982 GCTATCTGCGCCCCTTCA 59.494 61.111 4.18 0.00 0.00 3.02
530 532 2.281139 GGCTATCTGCGCCCCTTC 60.281 66.667 4.18 0.00 44.05 3.46
537 539 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
538 540 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
539 541 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
540 542 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
541 543 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
542 544 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
543 545 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
544 546 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
545 547 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
546 548 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
547 549 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
548 550 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
549 551 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
550 552 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
551 553 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
552 554 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
553 555 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
554 556 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
555 557 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
556 558 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
557 559 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
558 560 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
559 561 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
560 562 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
561 563 0.877071 CTTGGCTGCGATGTCTGTTT 59.123 50.000 0.00 0.00 0.00 2.83
562 564 1.580845 GCTTGGCTGCGATGTCTGTT 61.581 55.000 0.00 0.00 0.00 3.16
563 565 2.037136 GCTTGGCTGCGATGTCTGT 61.037 57.895 0.00 0.00 0.00 3.41
564 566 2.758089 GGCTTGGCTGCGATGTCTG 61.758 63.158 0.00 0.00 0.00 3.51
565 567 2.437359 GGCTTGGCTGCGATGTCT 60.437 61.111 0.00 0.00 0.00 3.41
566 568 3.512516 GGGCTTGGCTGCGATGTC 61.513 66.667 0.00 0.00 0.00 3.06
567 569 4.039092 AGGGCTTGGCTGCGATGT 62.039 61.111 0.00 0.00 0.00 3.06
568 570 3.515286 CAGGGCTTGGCTGCGATG 61.515 66.667 0.00 0.00 0.00 3.84
569 571 2.563013 ATTCAGGGCTTGGCTGCGAT 62.563 55.000 0.00 0.00 0.00 4.58
570 572 1.909459 TATTCAGGGCTTGGCTGCGA 61.909 55.000 0.00 0.00 0.00 5.10
571 573 1.031571 TTATTCAGGGCTTGGCTGCG 61.032 55.000 0.00 0.00 0.00 5.18
572 574 0.457443 GTTATTCAGGGCTTGGCTGC 59.543 55.000 0.00 0.00 0.00 5.25
573 575 2.134789 AGTTATTCAGGGCTTGGCTG 57.865 50.000 0.00 0.00 0.00 4.85
574 576 5.549619 AGATATAGTTATTCAGGGCTTGGCT 59.450 40.000 0.00 0.00 0.00 4.75
575 577 5.645497 CAGATATAGTTATTCAGGGCTTGGC 59.355 44.000 0.00 0.00 0.00 4.52
576 578 5.645497 GCAGATATAGTTATTCAGGGCTTGG 59.355 44.000 0.00 0.00 0.00 3.61
577 579 5.645497 GGCAGATATAGTTATTCAGGGCTTG 59.355 44.000 0.00 0.00 0.00 4.01
578 580 5.310594 TGGCAGATATAGTTATTCAGGGCTT 59.689 40.000 0.00 0.00 0.00 4.35
579 581 4.846367 TGGCAGATATAGTTATTCAGGGCT 59.154 41.667 0.00 0.00 0.00 5.19
580 582 5.165961 TGGCAGATATAGTTATTCAGGGC 57.834 43.478 0.00 0.00 0.00 5.19
581 583 6.352516 GGATGGCAGATATAGTTATTCAGGG 58.647 44.000 0.00 0.00 0.00 4.45
616 618 0.944386 CCCGCGGGATGACAATTTAG 59.056 55.000 41.82 6.56 37.50 1.85
653 655 1.586154 GAAATGCCCACACGTCCTGG 61.586 60.000 2.19 2.19 0.00 4.45
657 659 1.210155 GCAGAAATGCCCACACGTC 59.790 57.895 0.00 0.00 0.00 4.34
690 699 5.428253 TGCCCAACAAATACTACTCATCTC 58.572 41.667 0.00 0.00 0.00 2.75
703 712 1.445095 GTGCCACATGCCCAACAAA 59.555 52.632 0.00 0.00 40.16 2.83
713 722 1.021390 GCAGCTACTTCGTGCCACAT 61.021 55.000 0.00 0.00 0.00 3.21
740 750 6.601613 TGGGTGAACATTAGAATTGTCCATAC 59.398 38.462 0.00 0.00 0.00 2.39
745 755 5.240623 TGTGTGGGTGAACATTAGAATTGTC 59.759 40.000 0.00 0.00 31.49 3.18
805 817 6.432162 GCATATTAGACATCCATCCACACATT 59.568 38.462 0.00 0.00 0.00 2.71
806 818 5.942236 GCATATTAGACATCCATCCACACAT 59.058 40.000 0.00 0.00 0.00 3.21
813 825 4.389992 CACACGGCATATTAGACATCCATC 59.610 45.833 0.00 0.00 0.00 3.51
816 828 3.990092 TCACACGGCATATTAGACATCC 58.010 45.455 0.00 0.00 0.00 3.51
984 1001 0.390860 CCATCAGAGAACGGGCCTAG 59.609 60.000 0.84 0.00 0.00 3.02
1238 1255 6.534079 CACGGGTAAGATTACTAAAGAAGTGG 59.466 42.308 2.96 0.00 39.39 4.00
1267 1284 3.254629 TGGAGCTGCATCCAGAAAC 57.745 52.632 2.72 0.00 44.56 2.78
1427 1444 6.374613 GCTAGCCTTAAGTTTTACTGGAACAT 59.625 38.462 2.29 0.00 38.20 2.71
1430 1447 5.871834 TGCTAGCCTTAAGTTTTACTGGAA 58.128 37.500 13.29 0.00 0.00 3.53
1446 1464 2.864343 ACATCGTACGATTTTGCTAGCC 59.136 45.455 27.49 0.00 31.62 3.93
1728 1746 5.766222 CTTTGAGCAATATATTCAGGTGGC 58.234 41.667 0.00 0.00 0.00 5.01
1729 1747 5.533903 AGCTTTGAGCAATATATTCAGGTGG 59.466 40.000 2.47 0.00 45.56 4.61
1730 1748 6.436261 CAGCTTTGAGCAATATATTCAGGTG 58.564 40.000 2.47 0.00 45.56 4.00
1731 1749 5.533903 CCAGCTTTGAGCAATATATTCAGGT 59.466 40.000 2.47 0.00 45.56 4.00
1732 1750 5.564259 GCCAGCTTTGAGCAATATATTCAGG 60.564 44.000 2.47 0.00 45.56 3.86
1733 1751 5.458891 GCCAGCTTTGAGCAATATATTCAG 58.541 41.667 2.47 0.00 45.56 3.02
1734 1752 4.279169 GGCCAGCTTTGAGCAATATATTCA 59.721 41.667 0.00 0.00 45.56 2.57
1735 1753 4.279169 TGGCCAGCTTTGAGCAATATATTC 59.721 41.667 0.00 0.00 45.56 1.75
1736 1754 4.217510 TGGCCAGCTTTGAGCAATATATT 58.782 39.130 0.00 0.00 45.56 1.28
1737 1755 3.836146 TGGCCAGCTTTGAGCAATATAT 58.164 40.909 0.00 0.00 45.56 0.86
1738 1756 3.295585 TGGCCAGCTTTGAGCAATATA 57.704 42.857 0.00 0.00 45.56 0.86
1739 1757 2.148446 TGGCCAGCTTTGAGCAATAT 57.852 45.000 0.00 0.00 45.56 1.28
1740 1758 2.148446 ATGGCCAGCTTTGAGCAATA 57.852 45.000 13.05 0.00 45.56 1.90
1741 1759 2.148446 TATGGCCAGCTTTGAGCAAT 57.852 45.000 13.05 0.00 45.56 3.56
1742 1760 1.752498 CATATGGCCAGCTTTGAGCAA 59.248 47.619 13.05 0.00 45.56 3.91
1743 1761 1.395635 CATATGGCCAGCTTTGAGCA 58.604 50.000 13.05 0.00 45.56 4.26
1744 1762 0.031721 GCATATGGCCAGCTTTGAGC 59.968 55.000 13.05 4.41 37.88 4.26
1755 1773 2.224475 ACAGGATCACTCAGCATATGGC 60.224 50.000 4.56 0.00 45.30 4.40
1764 1782 8.816894 AGTTTCTCTTATAAACAGGATCACTCA 58.183 33.333 0.00 0.00 38.92 3.41
1865 1892 5.213675 GCGTAGTGATCTAAACGCTCTTAT 58.786 41.667 22.97 0.00 38.08 1.73
1866 1893 4.095334 TGCGTAGTGATCTAAACGCTCTTA 59.905 41.667 27.10 13.30 40.15 2.10
1867 1894 3.119602 TGCGTAGTGATCTAAACGCTCTT 60.120 43.478 27.10 0.00 40.15 2.85
1871 1898 2.281762 CCTTGCGTAGTGATCTAAACGC 59.718 50.000 23.27 23.27 40.01 4.84
1873 1900 3.858247 ACCCTTGCGTAGTGATCTAAAC 58.142 45.455 0.00 0.00 0.00 2.01
1876 1903 2.730382 TGACCCTTGCGTAGTGATCTA 58.270 47.619 0.00 0.00 0.00 1.98
1879 1906 1.338769 GGTTGACCCTTGCGTAGTGAT 60.339 52.381 0.00 0.00 0.00 3.06
1882 1909 0.470766 TTGGTTGACCCTTGCGTAGT 59.529 50.000 0.00 0.00 34.29 2.73
1883 1910 1.156736 CTTGGTTGACCCTTGCGTAG 58.843 55.000 0.00 0.00 34.29 3.51
1884 1911 0.759959 TCTTGGTTGACCCTTGCGTA 59.240 50.000 0.00 0.00 34.29 4.42
1911 2112 0.178967 TGCTGCATCCCTCAACCAAA 60.179 50.000 0.00 0.00 0.00 3.28
1969 2170 5.568620 TCCTGCCTTTTTAGTCTCTCTTT 57.431 39.130 0.00 0.00 0.00 2.52
1980 2181 2.172293 TGCCACATTTTCCTGCCTTTTT 59.828 40.909 0.00 0.00 0.00 1.94
1982 2183 1.345415 CTGCCACATTTTCCTGCCTTT 59.655 47.619 0.00 0.00 0.00 3.11
1989 2190 1.815003 CTGTCCTCTGCCACATTTTCC 59.185 52.381 0.00 0.00 0.00 3.13
1997 2198 1.907222 CTCCATGCTGTCCTCTGCCA 61.907 60.000 0.00 0.00 37.65 4.92
2012 2213 2.621407 GGGACTGATGAATTTGCCTCCA 60.621 50.000 0.00 0.00 0.00 3.86
2032 2233 0.670546 CTGCTGTTGGTGTACTCGGG 60.671 60.000 0.00 0.00 0.00 5.14
2079 2280 2.976903 GATGATGGAGCCCTGCGC 60.977 66.667 0.00 0.00 37.98 6.09
2110 2311 3.944250 ATGGCTCGGGGCTGGTTTG 62.944 63.158 11.37 0.00 41.46 2.93
2120 2321 2.438434 GGGTGTTGGATGGCTCGG 60.438 66.667 0.00 0.00 0.00 4.63
2309 2511 2.401583 ACTTGAAGCTGTGTGTGACA 57.598 45.000 0.00 0.00 0.00 3.58
2336 2538 1.293924 CACTGCTTGGATCCTTAGCG 58.706 55.000 24.83 21.76 37.73 4.26
2371 2573 2.088950 TTGCCAAGCGAACTACCTAC 57.911 50.000 0.00 0.00 0.00 3.18
2382 2584 2.159462 CGATCTCCTCTTTTTGCCAAGC 60.159 50.000 0.00 0.00 0.00 4.01
2403 2605 4.704833 TCAGCAACCCAGCGAGGC 62.705 66.667 0.00 0.00 40.15 4.70
2404 2606 1.888436 TACTCAGCAACCCAGCGAGG 61.888 60.000 0.00 0.00 38.53 4.63
2405 2607 0.459237 CTACTCAGCAACCCAGCGAG 60.459 60.000 0.00 0.00 39.40 5.03
2406 2608 0.898326 TCTACTCAGCAACCCAGCGA 60.898 55.000 0.00 0.00 40.15 4.93
2480 2694 0.476771 GGTGTTCCTTTGGGGTCTCA 59.523 55.000 0.00 0.00 36.25 3.27
2622 2837 3.246112 CGTGTGGTTGGAGGGGGA 61.246 66.667 0.00 0.00 0.00 4.81
2661 2876 0.904865 AGGCGTCATCTTGGAGACCA 60.905 55.000 0.00 0.00 0.00 4.02
2774 2989 1.301716 GGAGCTCGTTGCAACCTCA 60.302 57.895 25.75 11.78 45.94 3.86
2905 3121 2.933492 GCATGTGAAGGTACGGTTGCTA 60.933 50.000 0.00 0.00 0.00 3.49
3002 3218 4.660938 GGCGGTGGTTCTGGCCTT 62.661 66.667 3.32 0.00 42.29 4.35
3117 3334 2.359169 CCTCGCTGCTTGGGGAGTA 61.359 63.158 14.01 0.00 42.36 2.59
3125 3342 1.376553 GCCTTCTTCCTCGCTGCTT 60.377 57.895 0.00 0.00 0.00 3.91
3163 3380 3.991051 CTCGGTCGTGCCAGGTGT 61.991 66.667 0.00 0.00 36.97 4.16
3219 3436 2.125872 TATTGGCGACGCAAGCGA 60.126 55.556 23.09 4.46 42.83 4.93
3224 3441 3.707458 TGGGGTATTGGCGACGCA 61.707 61.111 23.09 1.44 0.00 5.24
3225 3442 3.199891 GTGGGGTATTGGCGACGC 61.200 66.667 12.43 12.43 0.00 5.19
3248 3465 1.469940 GCGTCGATGGTGAGTTCAGAT 60.470 52.381 6.79 0.00 0.00 2.90
3492 3709 5.541868 TCAACCATCCTTAAATTGCTCCAAA 59.458 36.000 0.00 0.00 0.00 3.28
3546 3763 1.891060 GCGCACTTTGTCCTCACTCG 61.891 60.000 0.30 0.00 0.00 4.18
3626 3843 2.975799 CACAACCACCGGTTCCCG 60.976 66.667 2.97 0.00 43.05 5.14
3645 3862 1.140252 GTCCTATGTGTAATGCCCCGT 59.860 52.381 0.00 0.00 0.00 5.28
3706 3924 2.842208 TCAGACTTTTGGTTGCGTTG 57.158 45.000 0.00 0.00 0.00 4.10
3952 4217 1.859427 AAGCTACGTCTCGTTCGGCA 61.859 55.000 0.00 0.00 41.54 5.69
4071 4336 8.659925 TTTGCAATAATGACAGAACAAACATT 57.340 26.923 0.00 0.00 36.94 2.71
4118 4383 4.402616 AAAGGAATCCATTGAACCTCCA 57.597 40.909 0.61 0.00 32.59 3.86
4515 4782 4.401925 AGGAGAGAACTCAAAATTGGTGG 58.598 43.478 4.64 0.00 44.22 4.61
4627 4912 2.736670 ATCCAATGCCAGTTCCTACC 57.263 50.000 0.00 0.00 0.00 3.18
4721 5006 2.928801 AACAGTACTGCCACATCACA 57.071 45.000 22.90 0.00 0.00 3.58
4886 5171 8.598202 TTAATGACAGAACATACTAGGGTACA 57.402 34.615 0.00 0.00 0.00 2.90
4933 5224 4.908736 ACACAAATAATAGTGATGCACGC 58.091 39.130 0.00 0.00 39.64 5.34
5337 5796 9.823602 TGGAGACATAGTTGCTGCAGCATATAG 62.824 44.444 39.83 28.32 43.63 1.31
5361 5820 3.872511 TGCTGGCATATTGAAGTTTGG 57.127 42.857 0.00 0.00 0.00 3.28
5746 7763 6.999705 TCTTGAGGGTAGTAAAACAAGGTA 57.000 37.500 0.00 0.00 36.45 3.08
5761 7778 7.478322 CATCTGAAACATGTTTATCTTGAGGG 58.522 38.462 23.33 9.83 32.11 4.30
5801 7818 7.084486 GTCAAGATCACAAAAAGGTAATGGAC 58.916 38.462 0.00 0.00 0.00 4.02
6147 8167 7.553881 ACATGGTTAATGAAATTAGGTCTCG 57.446 36.000 0.00 0.00 40.40 4.04
6206 8226 7.656137 AGGTACTACGAAAAATAGCACCATATG 59.344 37.037 0.00 0.00 38.21 1.78
6378 8398 4.037923 GCACTTGAGGAAAAGGTTGAATGA 59.962 41.667 0.00 0.00 0.00 2.57
6577 8597 8.540388 TGCCTAACAGTAGTAAGAAGATGAAAT 58.460 33.333 0.00 0.00 0.00 2.17
6595 8615 3.750371 ACACAGCTACATTTGCCTAACA 58.250 40.909 0.00 0.00 0.00 2.41
6658 8678 0.240945 GCATACAGCTGCAAAACGGT 59.759 50.000 15.27 0.00 41.87 4.83
6806 8826 3.018423 AGGAATATGTGCCTTGGGAAC 57.982 47.619 0.00 0.00 0.00 3.62
6931 8951 9.528018 CAACATGACAATAGTAAGTTGGTTTTT 57.472 29.630 0.00 0.00 33.67 1.94
6937 8957 9.897744 AATGAACAACATGACAATAGTAAGTTG 57.102 29.630 0.00 0.00 39.39 3.16
7006 9029 7.658982 GCACCAGAGATCATATCAGAATTGTAA 59.341 37.037 0.00 0.00 0.00 2.41
7007 9030 7.157347 GCACCAGAGATCATATCAGAATTGTA 58.843 38.462 0.00 0.00 0.00 2.41
7204 9227 7.977853 TGAGAACAGTCTTTTTACTAGAAACGT 59.022 33.333 0.00 0.00 32.80 3.99
7214 9237 8.677148 AAATGCTAGTGAGAACAGTCTTTTTA 57.323 30.769 0.00 0.00 32.80 1.52
7269 9295 8.862325 ACTATGACATTGATTTTGGTGTCTAA 57.138 30.769 3.80 0.00 41.08 2.10
7323 9349 7.174080 GTCTCCTTTTTCTTTCAGTTCAGCTAT 59.826 37.037 0.00 0.00 0.00 2.97
7324 9350 6.483640 GTCTCCTTTTTCTTTCAGTTCAGCTA 59.516 38.462 0.00 0.00 0.00 3.32
7325 9351 5.298026 GTCTCCTTTTTCTTTCAGTTCAGCT 59.702 40.000 0.00 0.00 0.00 4.24
7326 9352 5.066505 TGTCTCCTTTTTCTTTCAGTTCAGC 59.933 40.000 0.00 0.00 0.00 4.26
7327 9353 6.683974 TGTCTCCTTTTTCTTTCAGTTCAG 57.316 37.500 0.00 0.00 0.00 3.02
7328 9354 6.404734 GCTTGTCTCCTTTTTCTTTCAGTTCA 60.405 38.462 0.00 0.00 0.00 3.18
7329 9355 5.974158 GCTTGTCTCCTTTTTCTTTCAGTTC 59.026 40.000 0.00 0.00 0.00 3.01
7348 9376 7.445402 ACAAGTACTACAAATGATTGAGCTTGT 59.555 33.333 0.00 0.00 38.94 3.16
7349 9377 7.810658 ACAAGTACTACAAATGATTGAGCTTG 58.189 34.615 0.00 0.00 38.94 4.01
7350 9378 7.986085 ACAAGTACTACAAATGATTGAGCTT 57.014 32.000 0.00 0.00 38.94 3.74
7352 9380 7.201617 GGGTACAAGTACTACAAATGATTGAGC 60.202 40.741 9.94 0.00 36.86 4.26
7353 9381 7.822334 TGGGTACAAGTACTACAAATGATTGAG 59.178 37.037 9.94 0.00 36.86 3.02
7499 9527 2.735151 TCGCTAGGTCATCCAAAGAGA 58.265 47.619 0.00 0.00 35.89 3.10
7504 9532 2.115427 TGGAATCGCTAGGTCATCCAA 58.885 47.619 0.00 0.00 34.21 3.53
7553 9581 7.927629 ACATCATGAAATACAAAACAAGCAGTT 59.072 29.630 0.00 0.00 43.89 3.16
7841 9872 5.832539 ACGGAGGGAGAATTCATTATCAT 57.167 39.130 8.44 0.00 29.96 2.45
7877 9908 4.201561 GCTTCGCAATCAAATTTTCTCTGC 60.202 41.667 0.00 0.00 0.00 4.26
7886 9917 5.355071 TGTGAGAATAGCTTCGCAATCAAAT 59.645 36.000 0.00 0.00 41.87 2.32
7923 9954 5.418524 TGATTGGTGAGGAACAATGGTAATG 59.581 40.000 0.00 0.00 37.43 1.90
7960 9991 7.806149 TCTATACGCATTACATTATGGAACG 57.194 36.000 0.00 0.00 0.00 3.95
8167 10198 9.481800 CATTTTATAATGCAGTGCGTATAGATG 57.518 33.333 10.95 15.79 35.15 2.90
8176 10207 4.584325 TCCCTCCATTTTATAATGCAGTGC 59.416 41.667 8.58 8.58 39.87 4.40
8257 10288 1.739466 CCGTTCCCAATGTGATGACAG 59.261 52.381 0.00 0.00 34.87 3.51
8332 10364 5.293560 AGTGTACTTCAGACTTGAAAGAGC 58.706 41.667 0.00 0.00 42.48 4.09
8435 13686 3.335579 GTTTAGACAGCCCAAGTACCAG 58.664 50.000 0.00 0.00 0.00 4.00
8442 13693 1.414919 AGACACGTTTAGACAGCCCAA 59.585 47.619 0.00 0.00 0.00 4.12
8563 13814 6.550938 ACATGATCACTTCCATGAGAACTA 57.449 37.500 0.00 0.00 41.88 2.24
8564 13815 5.432680 ACATGATCACTTCCATGAGAACT 57.567 39.130 0.00 0.00 41.88 3.01
8565 13816 5.645067 TCAACATGATCACTTCCATGAGAAC 59.355 40.000 0.00 0.00 41.88 3.01
8566 13817 5.807909 TCAACATGATCACTTCCATGAGAA 58.192 37.500 0.00 0.00 41.88 2.87
8742 13993 5.759506 ACAATGAACACCACAACGAATTA 57.240 34.783 0.00 0.00 0.00 1.40
8747 13998 3.923461 ACAAAACAATGAACACCACAACG 59.077 39.130 0.00 0.00 0.00 4.10
8748 13999 5.854431 AACAAAACAATGAACACCACAAC 57.146 34.783 0.00 0.00 0.00 3.32
8749 14000 6.089551 CGTTAACAAAACAATGAACACCACAA 59.910 34.615 6.39 0.00 0.00 3.33
8750 14001 5.573282 CGTTAACAAAACAATGAACACCACA 59.427 36.000 6.39 0.00 0.00 4.17
8751 14002 5.573669 ACGTTAACAAAACAATGAACACCAC 59.426 36.000 6.39 0.00 0.00 4.16
8752 14003 5.710984 ACGTTAACAAAACAATGAACACCA 58.289 33.333 6.39 0.00 0.00 4.17
8753 14004 7.917720 ATACGTTAACAAAACAATGAACACC 57.082 32.000 6.39 0.00 0.00 4.16
8754 14005 9.613153 CAAATACGTTAACAAAACAATGAACAC 57.387 29.630 6.39 0.00 0.00 3.32
8755 14006 9.569167 TCAAATACGTTAACAAAACAATGAACA 57.431 25.926 6.39 0.00 0.00 3.18
8757 14008 9.239002 CCTCAAATACGTTAACAAAACAATGAA 57.761 29.630 6.39 0.00 0.00 2.57
8758 14009 7.380065 GCCTCAAATACGTTAACAAAACAATGA 59.620 33.333 6.39 0.71 0.00 2.57
8759 14010 7.381139 AGCCTCAAATACGTTAACAAAACAATG 59.619 33.333 6.39 0.00 0.00 2.82
8760 14011 7.430441 AGCCTCAAATACGTTAACAAAACAAT 58.570 30.769 6.39 0.00 0.00 2.71
8761 14012 6.797454 AGCCTCAAATACGTTAACAAAACAA 58.203 32.000 6.39 0.00 0.00 2.83
8762 14013 6.380095 AGCCTCAAATACGTTAACAAAACA 57.620 33.333 6.39 0.00 0.00 2.83
9162 14413 7.382218 GGCATTATGTTTGTATATTTCCTGTGC 59.618 37.037 0.00 0.00 0.00 4.57
9163 14414 8.632679 AGGCATTATGTTTGTATATTTCCTGTG 58.367 33.333 0.00 0.00 0.00 3.66
9164 14415 8.766994 AGGCATTATGTTTGTATATTTCCTGT 57.233 30.769 0.00 0.00 0.00 4.00
9184 14437 3.630769 CAGCTGATCAACATTGTAGGCAT 59.369 43.478 8.42 0.00 0.00 4.40
9187 14440 4.331992 CAGACAGCTGATCAACATTGTAGG 59.668 45.833 23.35 0.00 45.17 3.18
9267 14520 2.149578 ACATGAGAACAGCTTGAGCAC 58.850 47.619 0.00 0.00 45.16 4.40
9285 14538 6.260714 CACATCAGCTGGCACTTAATAATACA 59.739 38.462 15.13 0.00 0.00 2.29
9313 14778 3.242248 GTGTGTTTGGTCGTATATCGCTC 59.758 47.826 0.00 0.00 39.67 5.03
9358 14823 8.107095 TCCAAAATACCAGCATAAACTAAGACT 58.893 33.333 0.00 0.00 0.00 3.24
9361 14826 8.281212 ACTCCAAAATACCAGCATAAACTAAG 57.719 34.615 0.00 0.00 0.00 2.18
9365 14830 7.029563 CAGAACTCCAAAATACCAGCATAAAC 58.970 38.462 0.00 0.00 0.00 2.01
9387 14852 2.356535 GGAACGGAGGGAGTAGTACAGA 60.357 54.545 2.52 0.00 0.00 3.41
9388 14853 2.022934 GGAACGGAGGGAGTAGTACAG 58.977 57.143 2.52 0.00 0.00 2.74
9389 14854 1.355381 TGGAACGGAGGGAGTAGTACA 59.645 52.381 2.52 0.00 0.00 2.90
9390 14855 2.134789 TGGAACGGAGGGAGTAGTAC 57.865 55.000 0.00 0.00 0.00 2.73
9391 14856 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
9392 14857 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
9393 14858 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
9394 14859 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
9395 14860 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
9396 14861 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
9397 14862 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
9398 14863 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
9399 14864 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
9417 14882 9.660180 GTCCATAGTGAAATCTCTAAAAAGACT 57.340 33.333 0.00 0.00 0.00 3.24
9418 14883 9.660180 AGTCCATAGTGAAATCTCTAAAAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
9425 14890 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
9426 14891 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
9427 14892 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
9428 14893 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
9429 14894 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
9430 14895 6.971726 TCCGTATGTAGTCCATAGTGAAAT 57.028 37.500 0.00 0.00 36.71 2.17
9431 14896 6.322969 ACATCCGTATGTAGTCCATAGTGAAA 59.677 38.462 0.00 0.00 44.66 2.69
9432 14897 5.831525 ACATCCGTATGTAGTCCATAGTGAA 59.168 40.000 0.00 0.00 44.66 3.18
9433 14898 5.382616 ACATCCGTATGTAGTCCATAGTGA 58.617 41.667 0.00 0.00 44.66 3.41
9434 14899 5.707242 ACATCCGTATGTAGTCCATAGTG 57.293 43.478 0.00 0.00 44.66 2.74
9461 14926 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
9475 14940 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
9476 14941 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
9477 14942 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
9478 14943 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
9479 14944 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
9480 14945 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
9481 14946 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
9482 14947 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
9483 14948 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
9484 14949 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
9485 14950 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
9486 14951 5.276395 CGGACTACATACGAAGCAAAATGAG 60.276 44.000 0.00 0.00 0.00 2.90
9487 14952 4.565166 CGGACTACATACGAAGCAAAATGA 59.435 41.667 0.00 0.00 0.00 2.57
9488 14953 4.328983 ACGGACTACATACGAAGCAAAATG 59.671 41.667 0.00 0.00 0.00 2.32
9489 14954 4.501071 ACGGACTACATACGAAGCAAAAT 58.499 39.130 0.00 0.00 0.00 1.82
9490 14955 3.916761 ACGGACTACATACGAAGCAAAA 58.083 40.909 0.00 0.00 0.00 2.44
9491 14956 3.581024 ACGGACTACATACGAAGCAAA 57.419 42.857 0.00 0.00 0.00 3.68
9492 14957 3.691118 ACTACGGACTACATACGAAGCAA 59.309 43.478 0.00 0.00 0.00 3.91
9493 14958 3.064408 CACTACGGACTACATACGAAGCA 59.936 47.826 0.00 0.00 0.00 3.91
9494 14959 3.547613 CCACTACGGACTACATACGAAGC 60.548 52.174 0.00 0.00 36.56 3.86
9495 14960 3.873361 TCCACTACGGACTACATACGAAG 59.127 47.826 0.00 0.00 39.64 3.79
9496 14961 3.872696 TCCACTACGGACTACATACGAA 58.127 45.455 0.00 0.00 39.64 3.85
9497 14962 3.541996 TCCACTACGGACTACATACGA 57.458 47.619 0.00 0.00 39.64 3.43
9498 14963 4.514441 AGATTCCACTACGGACTACATACG 59.486 45.833 0.00 0.00 46.36 3.06
9499 14964 5.764192 AGAGATTCCACTACGGACTACATAC 59.236 44.000 0.00 0.00 46.36 2.39
9500 14965 5.938279 AGAGATTCCACTACGGACTACATA 58.062 41.667 0.00 0.00 46.36 2.29
9501 14966 4.794334 AGAGATTCCACTACGGACTACAT 58.206 43.478 0.00 0.00 46.36 2.29
9502 14967 4.232188 AGAGATTCCACTACGGACTACA 57.768 45.455 0.00 0.00 46.36 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.