Multiple sequence alignment - TraesCS2D01G303100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G303100 chr2D 100.000 5108 0 0 477 5584 386702528 386707635 0.000000e+00 9433.0
1 TraesCS2D01G303100 chr2D 91.532 248 21 0 5171 5418 459018322 459018075 5.360000e-90 342.0
2 TraesCS2D01G303100 chr2D 100.000 154 0 0 1 154 386702052 386702205 9.160000e-73 285.0
3 TraesCS2D01G303100 chr2D 96.078 102 4 0 5483 5584 286778364 286778263 3.460000e-37 167.0
4 TraesCS2D01G303100 chr2D 91.509 106 4 4 4941 5045 574413620 574413519 2.100000e-29 141.0
5 TraesCS2D01G303100 chr2D 77.515 169 27 9 513 672 59145284 59145118 2.140000e-14 91.6
6 TraesCS2D01G303100 chr2B 98.505 2073 28 3 2877 4947 458080083 458082154 0.000000e+00 3653.0
7 TraesCS2D01G303100 chr2B 96.780 2205 40 15 711 2892 458071212 458073408 0.000000e+00 3650.0
8 TraesCS2D01G303100 chr2B 97.902 143 3 0 5028 5170 458082153 458082295 1.200000e-61 248.0
9 TraesCS2D01G303100 chr2B 98.630 73 1 0 5413 5485 458082303 458082375 4.540000e-26 130.0
10 TraesCS2D01G303100 chr2B 79.389 131 22 5 513 639 461488959 461488830 2.770000e-13 87.9
11 TraesCS2D01G303100 chr2B 90.476 63 3 3 515 574 773826613 773826675 4.640000e-11 80.5
12 TraesCS2D01G303100 chr2A 93.649 2047 86 14 750 2763 523447549 523449584 0.000000e+00 3020.0
13 TraesCS2D01G303100 chr2A 94.982 1415 54 11 3540 4947 523450309 523451713 0.000000e+00 2204.0
14 TraesCS2D01G303100 chr2A 92.199 141 4 3 5028 5167 523451712 523451846 5.710000e-45 193.0
15 TraesCS2D01G303100 chrUn 100.000 401 0 0 2045 2445 478696743 478696343 0.000000e+00 741.0
16 TraesCS2D01G303100 chrUn 88.889 117 12 1 3657 3772 86506517 86506401 5.830000e-30 143.0
17 TraesCS2D01G303100 chrUn 88.889 117 12 1 3657 3772 419472374 419472258 5.830000e-30 143.0
18 TraesCS2D01G303100 chrUn 90.909 44 3 1 3491 3533 193548240 193548283 2.170000e-04 58.4
19 TraesCS2D01G303100 chr3B 92.369 249 18 1 5171 5418 795386059 795385811 2.470000e-93 353.0
20 TraesCS2D01G303100 chr7D 91.935 248 20 0 5171 5418 58401659 58401412 1.150000e-91 348.0
21 TraesCS2D01G303100 chr7D 95.098 102 5 0 5483 5584 627214216 627214317 1.610000e-35 161.0
22 TraesCS2D01G303100 chr7D 95.876 97 3 1 4938 5033 22964249 22964345 7.490000e-34 156.0
23 TraesCS2D01G303100 chr7D 91.964 112 7 2 5474 5584 635616345 635616455 7.490000e-34 156.0
24 TraesCS2D01G303100 chr7D 95.833 96 3 1 4938 5032 448337055 448336960 2.690000e-33 154.0
25 TraesCS2D01G303100 chr7D 94.595 37 2 0 3375 3411 243334802 243334766 2.170000e-04 58.4
26 TraesCS2D01G303100 chr7B 91.935 248 19 1 5171 5418 512995109 512994863 4.140000e-91 346.0
27 TraesCS2D01G303100 chr7B 96.154 52 1 1 513 564 46810850 46810900 3.580000e-12 84.2
28 TraesCS2D01G303100 chr5A 91.935 248 18 2 5172 5418 530995296 530995050 4.140000e-91 346.0
29 TraesCS2D01G303100 chr5A 90.476 42 4 0 3488 3529 678161395 678161436 7.810000e-04 56.5
30 TraesCS2D01G303100 chr7A 92.213 244 17 2 5171 5413 492129622 492129380 1.490000e-90 344.0
31 TraesCS2D01G303100 chr7A 91.165 249 20 2 5171 5418 211500868 211500621 2.490000e-88 337.0
32 TraesCS2D01G303100 chr3D 91.129 248 22 0 5171 5418 588971319 588971072 2.490000e-88 337.0
33 TraesCS2D01G303100 chr3D 88.732 142 15 1 13 154 40547827 40547687 7.440000e-39 172.0
34 TraesCS2D01G303100 chr3D 94.949 99 4 1 4943 5040 475310503 475310601 2.690000e-33 154.0
35 TraesCS2D01G303100 chr1D 91.129 248 22 0 5171 5418 24009171 24008924 2.490000e-88 337.0
36 TraesCS2D01G303100 chr1D 80.778 437 60 16 2705 3123 326010031 326010461 2.510000e-83 320.0
37 TraesCS2D01G303100 chr1D 87.838 148 16 2 1 148 95444366 95444221 7.440000e-39 172.0
38 TraesCS2D01G303100 chr1D 86.986 146 19 0 1 146 217139416 217139561 1.240000e-36 165.0
39 TraesCS2D01G303100 chr1D 87.075 147 17 2 1 146 287469042 287468897 1.240000e-36 165.0
40 TraesCS2D01G303100 chr1D 77.689 251 38 12 3196 3437 122837775 122838016 2.710000e-28 137.0
41 TraesCS2D01G303100 chr1B 84.793 217 32 1 2705 2920 439116602 439116818 3.390000e-52 217.0
42 TraesCS2D01G303100 chr1B 87.013 154 18 1 1 154 619213523 619213674 7.440000e-39 172.0
43 TraesCS2D01G303100 chr1B 94.898 98 3 2 4937 5032 328029562 328029465 9.690000e-33 152.0
44 TraesCS2D01G303100 chr1B 88.889 117 12 1 3657 3772 135123380 135123264 5.830000e-30 143.0
45 TraesCS2D01G303100 chr1B 89.535 86 8 1 3196 3280 187205981 187205896 2.130000e-19 108.0
46 TraesCS2D01G303100 chr1A 88.372 172 19 1 2705 2875 416545988 416545817 7.330000e-49 206.0
47 TraesCS2D01G303100 chr1A 96.040 101 4 0 5484 5584 244554990 244554890 1.240000e-36 165.0
48 TraesCS2D01G303100 chr1A 89.474 114 11 1 3657 3769 238112432 238112545 5.830000e-30 143.0
49 TraesCS2D01G303100 chr1A 90.244 41 4 0 3491 3531 319211665 319211625 3.000000e-03 54.7
50 TraesCS2D01G303100 chr5D 90.604 149 13 1 1 149 292818664 292818811 4.410000e-46 196.0
51 TraesCS2D01G303100 chr5D 89.726 146 14 1 1 146 452359761 452359617 9.550000e-43 185.0
52 TraesCS2D01G303100 chr5D 94.286 105 6 0 5480 5584 269087872 269087768 1.610000e-35 161.0
53 TraesCS2D01G303100 chr5D 96.809 94 1 2 4943 5035 109535627 109535535 7.490000e-34 156.0
54 TraesCS2D01G303100 chr5D 96.809 94 1 2 4943 5035 112843013 112842921 7.490000e-34 156.0
55 TraesCS2D01G303100 chr6D 88.356 146 16 1 1 146 86597720 86597864 2.070000e-39 174.0
56 TraesCS2D01G303100 chr6D 96.040 101 4 0 5484 5584 464487032 464487132 1.240000e-36 165.0
57 TraesCS2D01G303100 chr6D 95.098 102 5 0 5483 5584 225649290 225649391 1.610000e-35 161.0
58 TraesCS2D01G303100 chr6D 89.474 114 11 1 3657 3769 168770279 168770392 5.830000e-30 143.0
59 TraesCS2D01G303100 chr5B 87.755 147 15 3 1 146 712473561 712473705 9.620000e-38 169.0
60 TraesCS2D01G303100 chr5B 95.098 102 5 0 5483 5584 65594349 65594248 1.610000e-35 161.0
61 TraesCS2D01G303100 chr4A 98.889 90 0 1 4946 5034 556767955 556768044 5.790000e-35 159.0
62 TraesCS2D01G303100 chr4A 94.898 98 4 1 4945 5041 597739967 597739870 9.690000e-33 152.0
63 TraesCS2D01G303100 chr4A 92.683 41 3 0 3488 3528 537721958 537721998 6.040000e-05 60.2
64 TraesCS2D01G303100 chr3A 92.727 110 6 2 5477 5584 572117441 572117332 2.080000e-34 158.0
65 TraesCS2D01G303100 chr3A 78.974 195 26 12 512 694 27058779 27058970 9.830000e-23 119.0
66 TraesCS2D01G303100 chr3A 90.909 44 3 1 3491 3533 212444665 212444708 2.170000e-04 58.4
67 TraesCS2D01G303100 chr3A 92.308 39 3 0 3491 3529 467960119 467960081 7.810000e-04 56.5
68 TraesCS2D01G303100 chr6A 88.889 117 12 1 3657 3772 608879747 608879631 5.830000e-30 143.0
69 TraesCS2D01G303100 chr6A 86.441 59 5 3 639 694 24418296 24418354 1.680000e-05 62.1
70 TraesCS2D01G303100 chr6A 90.476 42 4 0 3488 3529 83370068 83370109 7.810000e-04 56.5
71 TraesCS2D01G303100 chr4D 89.474 114 11 1 3657 3769 123427203 123427316 5.830000e-30 143.0
72 TraesCS2D01G303100 chr4B 76.684 193 37 5 513 697 54642383 54642191 3.560000e-17 100.0
73 TraesCS2D01G303100 chr4B 92.683 41 3 0 3491 3531 669829079 669829039 6.040000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G303100 chr2D 386702052 386707635 5583 False 4859.000000 9433 100.000000 1 5584 2 chr2D.!!$F1 5583
1 TraesCS2D01G303100 chr2B 458071212 458073408 2196 False 3650.000000 3650 96.780000 711 2892 1 chr2B.!!$F1 2181
2 TraesCS2D01G303100 chr2B 458080083 458082375 2292 False 1343.666667 3653 98.345667 2877 5485 3 chr2B.!!$F3 2608
3 TraesCS2D01G303100 chr2A 523447549 523451846 4297 False 1805.666667 3020 93.610000 750 5167 3 chr2A.!!$F1 4417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 512 0.034477 GGTGGGTTGTCGGATCCATT 60.034 55.0 13.41 0.00 0.00 3.16 F
606 607 0.034896 TGAGGGCCGTTTGAGAAGAC 59.965 55.0 0.00 0.00 0.00 3.01 F
608 609 0.035458 AGGGCCGTTTGAGAAGACTG 59.965 55.0 0.00 0.00 0.00 3.51 F
609 610 0.034896 GGGCCGTTTGAGAAGACTGA 59.965 55.0 0.00 0.00 0.00 3.41 F
662 663 0.039074 CCCGTCCGAGCATATGAGAC 60.039 60.0 6.97 6.26 0.00 3.36 F
664 665 0.386100 CGTCCGAGCATATGAGACGG 60.386 60.0 21.19 21.19 44.86 4.79 F
738 739 0.606401 ACGGTGATTGAGGTTGGCTG 60.606 55.0 0.00 0.00 0.00 4.85 F
2938 2991 0.676184 TGGCGCCATTGCTTTGTTTA 59.324 45.0 29.03 0.00 34.43 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1315 1329 2.930826 TCCACCAAGTTTCACTCCTC 57.069 50.000 0.00 0.00 0.00 3.71 R
2589 2635 6.295292 GGAAATGTGAAAGCTTATGGGAGTTT 60.295 38.462 0.00 0.00 0.00 2.66 R
2755 2808 1.952990 CTCAGCTCCGCAATCTAGAGA 59.047 52.381 0.00 0.00 0.00 3.10 R
2756 2809 1.952990 TCTCAGCTCCGCAATCTAGAG 59.047 52.381 0.00 0.00 0.00 2.43 R
2842 2895 2.278596 CATACTCCGACGGGTGCG 60.279 66.667 15.25 3.03 33.83 5.34 R
3066 3120 8.397906 TGCATATCATAGCTTGTTTTTCTACAC 58.602 33.333 0.00 0.00 0.00 2.90 R
3125 3179 4.715713 TGCCGCGATATCCTATCTAGTAT 58.284 43.478 8.23 0.00 0.00 2.12 R
5231 5722 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.717194 GAGATTTGCCGAACGTACCA 58.283 50.000 0.00 0.00 0.00 3.25
20 21 1.392510 GAGATTTGCCGAACGTACCAC 59.607 52.381 0.00 0.00 0.00 4.16
22 23 0.319727 ATTTGCCGAACGTACCACGA 60.320 50.000 5.61 0.00 46.05 4.35
23 24 1.214373 TTTGCCGAACGTACCACGAC 61.214 55.000 5.61 0.00 46.05 4.34
24 25 3.167945 GCCGAACGTACCACGACG 61.168 66.667 5.61 10.11 46.05 5.12
26 27 3.167945 CGAACGTACCACGACGGC 61.168 66.667 5.61 0.00 46.05 5.68
27 28 3.167945 GAACGTACCACGACGGCG 61.168 66.667 10.39 10.39 46.05 6.46
80 81 4.238385 CGTGAGCGTTCTTTCGGA 57.762 55.556 0.00 0.00 0.00 4.55
81 82 2.062779 CGTGAGCGTTCTTTCGGAG 58.937 57.895 0.00 0.00 0.00 4.63
82 83 1.782181 GTGAGCGTTCTTTCGGAGC 59.218 57.895 0.00 0.00 0.00 4.70
83 84 0.667792 GTGAGCGTTCTTTCGGAGCT 60.668 55.000 0.00 0.00 41.29 4.09
84 85 0.667487 TGAGCGTTCTTTCGGAGCTG 60.667 55.000 0.00 0.00 38.39 4.24
85 86 1.355066 GAGCGTTCTTTCGGAGCTGG 61.355 60.000 0.00 0.00 38.39 4.85
86 87 3.028366 GCGTTCTTTCGGAGCTGGC 62.028 63.158 0.00 0.00 0.00 4.85
87 88 2.730672 CGTTCTTTCGGAGCTGGCG 61.731 63.158 0.00 0.00 0.00 5.69
88 89 2.047274 TTCTTTCGGAGCTGGCGG 60.047 61.111 0.00 0.00 0.00 6.13
89 90 4.760047 TCTTTCGGAGCTGGCGGC 62.760 66.667 11.19 11.19 42.19 6.53
105 106 4.821589 GCGGAGAGCCTGGGAACG 62.822 72.222 0.00 0.00 40.81 3.95
106 107 4.148825 CGGAGAGCCTGGGAACGG 62.149 72.222 0.00 0.00 0.00 4.44
107 108 4.475135 GGAGAGCCTGGGAACGGC 62.475 72.222 0.00 0.00 46.10 5.68
133 134 4.681978 GGGCACGACAACGGAGCT 62.682 66.667 0.00 0.00 44.46 4.09
134 135 3.414700 GGCACGACAACGGAGCTG 61.415 66.667 0.00 0.00 44.46 4.24
135 136 4.077188 GCACGACAACGGAGCTGC 62.077 66.667 0.00 0.00 44.46 5.25
136 137 3.767230 CACGACAACGGAGCTGCG 61.767 66.667 26.95 26.95 44.46 5.18
137 138 3.973516 ACGACAACGGAGCTGCGA 61.974 61.111 34.91 0.00 44.46 5.10
138 139 3.175240 CGACAACGGAGCTGCGAG 61.175 66.667 34.91 25.80 35.72 5.03
139 140 3.482783 GACAACGGAGCTGCGAGC 61.483 66.667 34.91 15.33 42.84 5.03
149 150 4.498520 CTGCGAGCCGGACGACAT 62.499 66.667 21.93 0.00 0.00 3.06
150 151 4.794439 TGCGAGCCGGACGACATG 62.794 66.667 21.93 0.00 0.00 3.21
152 153 3.822192 CGAGCCGGACGACATGGA 61.822 66.667 5.05 0.00 0.00 3.41
153 154 2.105128 GAGCCGGACGACATGGAG 59.895 66.667 5.05 0.00 0.00 3.86
495 496 2.565046 ATTTGGTGCAATTTGGGGTG 57.435 45.000 0.00 0.00 0.00 4.61
496 497 0.471617 TTTGGTGCAATTTGGGGTGG 59.528 50.000 0.00 0.00 0.00 4.61
497 498 1.414061 TTGGTGCAATTTGGGGTGGG 61.414 55.000 0.00 0.00 0.00 4.61
498 499 1.841103 GGTGCAATTTGGGGTGGGT 60.841 57.895 0.00 0.00 0.00 4.51
499 500 1.414866 GGTGCAATTTGGGGTGGGTT 61.415 55.000 0.00 0.00 0.00 4.11
500 501 0.250252 GTGCAATTTGGGGTGGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
501 502 0.692419 TGCAATTTGGGGTGGGTTGT 60.692 50.000 0.00 0.00 0.00 3.32
502 503 0.034756 GCAATTTGGGGTGGGTTGTC 59.965 55.000 0.00 0.00 0.00 3.18
503 504 0.316841 CAATTTGGGGTGGGTTGTCG 59.683 55.000 0.00 0.00 0.00 4.35
504 505 0.830023 AATTTGGGGTGGGTTGTCGG 60.830 55.000 0.00 0.00 0.00 4.79
505 506 1.721093 ATTTGGGGTGGGTTGTCGGA 61.721 55.000 0.00 0.00 0.00 4.55
506 507 1.721093 TTTGGGGTGGGTTGTCGGAT 61.721 55.000 0.00 0.00 0.00 4.18
507 508 2.132089 TTGGGGTGGGTTGTCGGATC 62.132 60.000 0.00 0.00 0.00 3.36
508 509 2.271173 GGGTGGGTTGTCGGATCC 59.729 66.667 0.00 0.00 0.00 3.36
509 510 2.598787 GGGTGGGTTGTCGGATCCA 61.599 63.158 13.41 0.00 0.00 3.41
510 511 1.607612 GGTGGGTTGTCGGATCCAT 59.392 57.895 13.41 0.00 0.00 3.41
511 512 0.034477 GGTGGGTTGTCGGATCCATT 60.034 55.000 13.41 0.00 0.00 3.16
512 513 1.094785 GTGGGTTGTCGGATCCATTG 58.905 55.000 13.41 0.00 0.00 2.82
513 514 0.695924 TGGGTTGTCGGATCCATTGT 59.304 50.000 13.41 0.00 0.00 2.71
514 515 1.094785 GGGTTGTCGGATCCATTGTG 58.905 55.000 13.41 0.00 0.00 3.33
515 516 1.094785 GGTTGTCGGATCCATTGTGG 58.905 55.000 13.41 0.00 39.43 4.17
516 517 0.451783 GTTGTCGGATCCATTGTGGC 59.548 55.000 13.41 0.00 37.47 5.01
517 518 1.024046 TTGTCGGATCCATTGTGGCG 61.024 55.000 13.41 0.00 37.47 5.69
518 519 2.180204 GTCGGATCCATTGTGGCGG 61.180 63.158 13.41 0.00 37.47 6.13
519 520 2.901840 CGGATCCATTGTGGCGGG 60.902 66.667 13.41 0.00 37.47 6.13
520 521 3.219198 GGATCCATTGTGGCGGGC 61.219 66.667 6.95 0.00 37.47 6.13
521 522 3.585990 GATCCATTGTGGCGGGCG 61.586 66.667 0.00 0.00 37.47 6.13
522 523 4.424711 ATCCATTGTGGCGGGCGT 62.425 61.111 0.00 0.00 37.47 5.68
525 526 4.101790 CATTGTGGCGGGCGTGTC 62.102 66.667 0.00 0.00 0.00 3.67
540 541 4.265056 GTCCGGGCGCCCCATATT 62.265 66.667 39.24 0.00 45.83 1.28
541 542 3.948719 TCCGGGCGCCCCATATTC 61.949 66.667 39.24 13.53 45.83 1.75
542 543 4.263572 CCGGGCGCCCCATATTCA 62.264 66.667 39.24 0.00 45.83 2.57
543 544 2.978010 CGGGCGCCCCATATTCAC 60.978 66.667 39.24 11.89 45.83 3.18
544 545 2.597510 GGGCGCCCCATATTCACC 60.598 66.667 36.64 5.01 44.65 4.02
545 546 2.597510 GGCGCCCCATATTCACCC 60.598 66.667 18.11 0.00 0.00 4.61
546 547 2.515901 GCGCCCCATATTCACCCT 59.484 61.111 0.00 0.00 0.00 4.34
547 548 1.758592 GCGCCCCATATTCACCCTA 59.241 57.895 0.00 0.00 0.00 3.53
548 549 0.328258 GCGCCCCATATTCACCCTAT 59.672 55.000 0.00 0.00 0.00 2.57
549 550 1.557832 GCGCCCCATATTCACCCTATA 59.442 52.381 0.00 0.00 0.00 1.31
550 551 2.172717 GCGCCCCATATTCACCCTATAT 59.827 50.000 0.00 0.00 0.00 0.86
551 552 3.371595 GCGCCCCATATTCACCCTATATT 60.372 47.826 0.00 0.00 0.00 1.28
552 553 4.855340 CGCCCCATATTCACCCTATATTT 58.145 43.478 0.00 0.00 0.00 1.40
553 554 4.640201 CGCCCCATATTCACCCTATATTTG 59.360 45.833 0.00 0.00 0.00 2.32
554 555 4.956075 GCCCCATATTCACCCTATATTTGG 59.044 45.833 0.00 0.00 0.00 3.28
565 566 4.796606 CCCTATATTTGGGCTGGATATGG 58.203 47.826 1.19 0.00 37.99 2.74
566 567 4.386761 CCCTATATTTGGGCTGGATATGGG 60.387 50.000 1.19 8.71 37.99 4.00
567 568 3.763557 ATATTTGGGCTGGATATGGGG 57.236 47.619 0.00 0.00 0.00 4.96
568 569 1.244366 ATTTGGGCTGGATATGGGGT 58.756 50.000 0.00 0.00 0.00 4.95
569 570 0.261402 TTTGGGCTGGATATGGGGTG 59.739 55.000 0.00 0.00 0.00 4.61
570 571 2.116125 GGGCTGGATATGGGGTGC 59.884 66.667 0.00 0.00 0.00 5.01
571 572 2.116125 GGCTGGATATGGGGTGCC 59.884 66.667 0.00 0.00 0.00 5.01
572 573 2.281761 GCTGGATATGGGGTGCCG 60.282 66.667 0.00 0.00 0.00 5.69
573 574 2.431683 CTGGATATGGGGTGCCGG 59.568 66.667 0.00 0.00 0.00 6.13
574 575 2.040359 TGGATATGGGGTGCCGGA 60.040 61.111 5.05 0.00 0.00 5.14
575 576 2.116983 CTGGATATGGGGTGCCGGAG 62.117 65.000 5.05 0.00 0.00 4.63
589 590 2.674754 GGAGGCCCGGACATTTGA 59.325 61.111 0.73 0.00 0.00 2.69
590 591 1.452108 GGAGGCCCGGACATTTGAG 60.452 63.158 0.73 0.00 0.00 3.02
591 592 1.452108 GAGGCCCGGACATTTGAGG 60.452 63.158 0.73 0.00 0.00 3.86
592 593 2.440247 GGCCCGGACATTTGAGGG 60.440 66.667 0.73 0.00 46.44 4.30
594 595 2.440247 CCCGGACATTTGAGGGCC 60.440 66.667 0.73 0.00 37.07 5.80
595 596 2.824041 CCGGACATTTGAGGGCCG 60.824 66.667 0.00 0.00 41.53 6.13
596 597 2.046314 CGGACATTTGAGGGCCGT 60.046 61.111 0.00 0.00 37.35 5.68
597 598 1.674322 CGGACATTTGAGGGCCGTT 60.674 57.895 0.00 0.00 37.35 4.44
598 599 1.241315 CGGACATTTGAGGGCCGTTT 61.241 55.000 0.00 0.00 37.35 3.60
599 600 0.243636 GGACATTTGAGGGCCGTTTG 59.756 55.000 0.00 0.00 0.00 2.93
600 601 1.243902 GACATTTGAGGGCCGTTTGA 58.756 50.000 0.00 0.00 0.00 2.69
601 602 1.200020 GACATTTGAGGGCCGTTTGAG 59.800 52.381 0.00 0.00 0.00 3.02
602 603 1.202879 ACATTTGAGGGCCGTTTGAGA 60.203 47.619 0.00 0.00 0.00 3.27
603 604 1.885887 CATTTGAGGGCCGTTTGAGAA 59.114 47.619 0.00 0.00 0.00 2.87
604 605 1.604604 TTTGAGGGCCGTTTGAGAAG 58.395 50.000 0.00 0.00 0.00 2.85
605 606 0.762418 TTGAGGGCCGTTTGAGAAGA 59.238 50.000 0.00 0.00 0.00 2.87
606 607 0.034896 TGAGGGCCGTTTGAGAAGAC 59.965 55.000 0.00 0.00 0.00 3.01
607 608 0.321996 GAGGGCCGTTTGAGAAGACT 59.678 55.000 0.00 0.00 0.00 3.24
608 609 0.035458 AGGGCCGTTTGAGAAGACTG 59.965 55.000 0.00 0.00 0.00 3.51
609 610 0.034896 GGGCCGTTTGAGAAGACTGA 59.965 55.000 0.00 0.00 0.00 3.41
610 611 1.339151 GGGCCGTTTGAGAAGACTGAT 60.339 52.381 0.00 0.00 0.00 2.90
611 612 2.427506 GGCCGTTTGAGAAGACTGATT 58.572 47.619 0.00 0.00 0.00 2.57
612 613 2.160417 GGCCGTTTGAGAAGACTGATTG 59.840 50.000 0.00 0.00 0.00 2.67
613 614 3.067106 GCCGTTTGAGAAGACTGATTGA 58.933 45.455 0.00 0.00 0.00 2.57
614 615 3.124297 GCCGTTTGAGAAGACTGATTGAG 59.876 47.826 0.00 0.00 0.00 3.02
615 616 4.310769 CCGTTTGAGAAGACTGATTGAGT 58.689 43.478 0.00 0.00 37.76 3.41
658 659 2.357517 GGCCCGTCCGAGCATATG 60.358 66.667 0.00 0.00 0.00 1.78
659 660 2.734591 GCCCGTCCGAGCATATGA 59.265 61.111 6.97 0.00 0.00 2.15
660 661 1.373497 GCCCGTCCGAGCATATGAG 60.373 63.158 6.97 0.00 0.00 2.90
661 662 1.806461 GCCCGTCCGAGCATATGAGA 61.806 60.000 6.97 0.00 0.00 3.27
662 663 0.039074 CCCGTCCGAGCATATGAGAC 60.039 60.000 6.97 6.26 0.00 3.36
663 664 3.078804 CGTCCGAGCATATGAGACG 57.921 57.895 17.54 17.54 43.52 4.18
664 665 0.386100 CGTCCGAGCATATGAGACGG 60.386 60.000 21.19 21.19 44.86 4.79
666 667 1.911057 TCCGAGCATATGAGACGGAT 58.089 50.000 23.89 0.00 45.87 4.18
667 668 2.239400 TCCGAGCATATGAGACGGATT 58.761 47.619 23.89 0.00 45.87 3.01
668 669 2.628178 TCCGAGCATATGAGACGGATTT 59.372 45.455 23.89 0.00 45.87 2.17
669 670 2.733552 CCGAGCATATGAGACGGATTTG 59.266 50.000 22.10 3.85 45.31 2.32
670 671 3.552890 CCGAGCATATGAGACGGATTTGA 60.553 47.826 22.10 0.00 45.31 2.69
671 672 3.672397 CGAGCATATGAGACGGATTTGAG 59.328 47.826 6.97 0.00 0.00 3.02
672 673 4.557496 CGAGCATATGAGACGGATTTGAGA 60.557 45.833 6.97 0.00 0.00 3.27
673 674 4.880759 AGCATATGAGACGGATTTGAGAG 58.119 43.478 6.97 0.00 0.00 3.20
674 675 3.993081 GCATATGAGACGGATTTGAGAGG 59.007 47.826 6.97 0.00 0.00 3.69
675 676 4.502259 GCATATGAGACGGATTTGAGAGGT 60.502 45.833 6.97 0.00 0.00 3.85
676 677 3.810310 ATGAGACGGATTTGAGAGGTC 57.190 47.619 0.00 0.00 0.00 3.85
677 678 1.825474 TGAGACGGATTTGAGAGGTCC 59.175 52.381 0.00 0.00 0.00 4.46
686 687 6.591750 GGATTTGAGAGGTCCGATTATAGA 57.408 41.667 0.00 0.00 0.00 1.98
687 688 7.176589 GGATTTGAGAGGTCCGATTATAGAT 57.823 40.000 0.00 0.00 0.00 1.98
688 689 7.038659 GGATTTGAGAGGTCCGATTATAGATG 58.961 42.308 0.00 0.00 0.00 2.90
689 690 5.392767 TTGAGAGGTCCGATTATAGATGC 57.607 43.478 0.00 0.00 0.00 3.91
690 691 4.667573 TGAGAGGTCCGATTATAGATGCT 58.332 43.478 0.00 0.00 0.00 3.79
691 692 5.080337 TGAGAGGTCCGATTATAGATGCTT 58.920 41.667 0.00 0.00 0.00 3.91
692 693 5.540337 TGAGAGGTCCGATTATAGATGCTTT 59.460 40.000 0.00 0.00 0.00 3.51
693 694 6.719829 TGAGAGGTCCGATTATAGATGCTTTA 59.280 38.462 0.00 0.00 0.00 1.85
694 695 7.232737 TGAGAGGTCCGATTATAGATGCTTTAA 59.767 37.037 0.00 0.00 0.00 1.52
695 696 7.607250 AGAGGTCCGATTATAGATGCTTTAAG 58.393 38.462 0.00 0.00 0.00 1.85
696 697 7.451877 AGAGGTCCGATTATAGATGCTTTAAGA 59.548 37.037 0.00 0.00 0.00 2.10
697 698 7.607250 AGGTCCGATTATAGATGCTTTAAGAG 58.393 38.462 0.00 0.00 0.00 2.85
738 739 0.606401 ACGGTGATTGAGGTTGGCTG 60.606 55.000 0.00 0.00 0.00 4.85
754 755 1.269778 GGCTGGCCAGAAGACAAAAAC 60.270 52.381 37.21 13.87 35.81 2.43
755 756 1.269778 GCTGGCCAGAAGACAAAAACC 60.270 52.381 37.21 9.96 0.00 3.27
789 790 3.514706 AGATAAAATTGCATGGTGCCACA 59.485 39.130 0.00 0.00 44.23 4.17
811 812 1.659098 CTGCGATCCTAACCGTCAAAC 59.341 52.381 0.00 0.00 0.00 2.93
920 928 1.263356 TCCCGTCCCAAGTTCAGTAG 58.737 55.000 0.00 0.00 0.00 2.57
921 929 0.974383 CCCGTCCCAAGTTCAGTAGT 59.026 55.000 0.00 0.00 0.00 2.73
922 930 2.173519 CCCGTCCCAAGTTCAGTAGTA 58.826 52.381 0.00 0.00 0.00 1.82
1011 1019 2.324014 CTTCCCCGATGGATCCGCAA 62.324 60.000 7.39 0.00 44.66 4.85
1048 1056 1.202580 GCTATCTGTGCGGAGGTGATT 60.203 52.381 0.00 0.00 0.00 2.57
1470 1484 7.257722 ACAATTGTGTCCTAAACAAAACTCTG 58.742 34.615 11.07 0.00 37.92 3.35
2613 2666 5.904362 ACTCCCATAAGCTTTCACATTTC 57.096 39.130 3.20 0.00 0.00 2.17
2755 2808 7.949903 TTTTAACGAGTATGTGTATGTGTGT 57.050 32.000 0.00 0.00 0.00 3.72
2756 2809 7.571089 TTTAACGAGTATGTGTATGTGTGTC 57.429 36.000 0.00 0.00 0.00 3.67
2842 2895 1.009829 CCGCATCCTGTACAAGAAGC 58.990 55.000 10.89 10.89 0.00 3.86
2938 2991 0.676184 TGGCGCCATTGCTTTGTTTA 59.324 45.000 29.03 0.00 34.43 2.01
3372 3426 5.813672 CCTGAAAAATTAGGGTTCGTATCGA 59.186 40.000 0.00 0.00 0.00 3.59
3674 4155 2.432510 GGTGGGTTTGTTTCATGGTTCA 59.567 45.455 0.00 0.00 0.00 3.18
3707 4189 5.302568 TGGTTGCTCTCTCAATTGTTGATTT 59.697 36.000 5.13 0.00 39.30 2.17
4058 4543 3.802948 TTTTAAACAAAGGCGAGGCAA 57.197 38.095 0.00 0.00 0.00 4.52
4281 4766 1.069765 CCTGGCGCACCTACCTATG 59.930 63.158 10.83 0.00 36.63 2.23
4525 5011 0.032403 TTGCTTTGCATGCTGTGTCC 59.968 50.000 20.33 3.15 38.76 4.02
4672 5162 2.289820 TGTATTAGGCAGTACTCGCTCG 59.710 50.000 14.28 0.00 0.00 5.03
4955 5445 8.904099 AAAATGTCTTATATTTACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
4956 5446 7.613551 AATGTCTTATATTTACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
4957 5447 6.645790 TGTCTTATATTTACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
4958 5448 5.537674 TGTCTTATATTTACTCCCTCCGTCC 59.462 44.000 0.00 0.00 0.00 4.79
4959 5449 5.047448 GTCTTATATTTACTCCCTCCGTCCC 60.047 48.000 0.00 0.00 0.00 4.46
4960 5450 2.852714 TATTTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4961 5451 2.191981 ATTTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
4962 5452 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
4963 5453 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
4964 5454 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
4965 5455 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
4966 5456 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4967 5457 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4968 5458 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4969 5459 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4970 5460 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4971 5461 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4972 5462 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4973 5463 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4974 5464 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4975 5465 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4976 5466 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4977 5467 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4978 5468 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4979 5469 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4980 5470 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4981 5471 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4982 5472 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4983 5473 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4984 5474 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4987 5477 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
4988 5478 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
4990 5480 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
4991 5481 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
4992 5482 4.690122 AGCGTTTTTGACACTAGTGTAGT 58.310 39.130 27.98 6.32 45.05 2.73
5005 5495 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
5006 5496 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
5007 5497 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
5008 5498 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
5009 5499 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
5010 5500 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
5011 5501 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
5012 5502 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
5013 5503 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
5016 5506 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5017 5507 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5018 5508 6.856426 GTCAAAAACGCTCTTATATTATGGGC 59.144 38.462 0.00 0.00 0.00 5.36
5021 5511 3.520290 CGCTCTTATATTATGGGCGGA 57.480 47.619 6.75 0.00 45.62 5.54
5022 5512 3.448686 CGCTCTTATATTATGGGCGGAG 58.551 50.000 6.75 0.00 45.62 4.63
5023 5513 3.738281 CGCTCTTATATTATGGGCGGAGG 60.738 52.174 6.75 0.00 45.62 4.30
5024 5514 3.432326 GCTCTTATATTATGGGCGGAGGG 60.432 52.174 0.00 0.00 0.00 4.30
5025 5515 4.030913 CTCTTATATTATGGGCGGAGGGA 58.969 47.826 0.00 0.00 0.00 4.20
5026 5516 4.030913 TCTTATATTATGGGCGGAGGGAG 58.969 47.826 0.00 0.00 0.00 4.30
5082 5573 5.807011 CCATGCTCTTTAATTGTGCTAAACC 59.193 40.000 0.00 0.00 0.00 3.27
5170 5661 2.510238 CCTGGCGCACAGTAGAGC 60.510 66.667 19.93 0.00 46.06 4.09
5171 5662 2.575993 CTGGCGCACAGTAGAGCT 59.424 61.111 10.83 0.00 42.42 4.09
5172 5663 1.518133 CTGGCGCACAGTAGAGCTC 60.518 63.158 10.83 5.27 42.42 4.09
5173 5664 2.202810 GGCGCACAGTAGAGCTCC 60.203 66.667 10.93 0.00 0.00 4.70
5174 5665 2.202810 GCGCACAGTAGAGCTCCC 60.203 66.667 10.93 0.84 0.00 4.30
5175 5666 2.716017 GCGCACAGTAGAGCTCCCT 61.716 63.158 10.93 3.62 0.00 4.20
5176 5667 1.435515 CGCACAGTAGAGCTCCCTC 59.564 63.158 10.93 0.93 38.42 4.30
5177 5668 1.819905 GCACAGTAGAGCTCCCTCC 59.180 63.158 10.93 0.00 38.96 4.30
5178 5669 2.010582 GCACAGTAGAGCTCCCTCCG 62.011 65.000 10.93 1.37 38.96 4.63
5179 5670 0.681564 CACAGTAGAGCTCCCTCCGT 60.682 60.000 10.93 0.00 38.96 4.69
5180 5671 0.039911 ACAGTAGAGCTCCCTCCGTT 59.960 55.000 10.93 0.00 38.96 4.44
5181 5672 0.741915 CAGTAGAGCTCCCTCCGTTC 59.258 60.000 10.93 0.00 38.96 3.95
5182 5673 0.396001 AGTAGAGCTCCCTCCGTTCC 60.396 60.000 10.93 0.00 38.96 3.62
5183 5674 0.683504 GTAGAGCTCCCTCCGTTCCA 60.684 60.000 10.93 0.00 38.96 3.53
5184 5675 0.261991 TAGAGCTCCCTCCGTTCCAT 59.738 55.000 10.93 0.00 38.96 3.41
5185 5676 1.144936 GAGCTCCCTCCGTTCCATG 59.855 63.158 0.87 0.00 31.68 3.66
5186 5677 1.306141 AGCTCCCTCCGTTCCATGA 60.306 57.895 0.00 0.00 0.00 3.07
5187 5678 0.692419 AGCTCCCTCCGTTCCATGAT 60.692 55.000 0.00 0.00 0.00 2.45
5188 5679 1.048601 GCTCCCTCCGTTCCATGATA 58.951 55.000 0.00 0.00 0.00 2.15
5189 5680 1.625818 GCTCCCTCCGTTCCATGATAT 59.374 52.381 0.00 0.00 0.00 1.63
5190 5681 2.832129 GCTCCCTCCGTTCCATGATATA 59.168 50.000 0.00 0.00 0.00 0.86
5191 5682 3.260884 GCTCCCTCCGTTCCATGATATAA 59.739 47.826 0.00 0.00 0.00 0.98
5192 5683 4.621747 GCTCCCTCCGTTCCATGATATAAG 60.622 50.000 0.00 0.00 0.00 1.73
5193 5684 3.838317 TCCCTCCGTTCCATGATATAAGG 59.162 47.826 0.00 0.00 0.00 2.69
5194 5685 3.583086 CCCTCCGTTCCATGATATAAGGT 59.417 47.826 0.00 0.00 0.00 3.50
5195 5686 4.563580 CCCTCCGTTCCATGATATAAGGTG 60.564 50.000 0.00 0.00 0.00 4.00
5196 5687 4.040461 CCTCCGTTCCATGATATAAGGTGT 59.960 45.833 0.00 0.00 0.00 4.16
5197 5688 5.245301 CCTCCGTTCCATGATATAAGGTGTA 59.755 44.000 0.00 0.00 0.00 2.90
5198 5689 6.070767 CCTCCGTTCCATGATATAAGGTGTAT 60.071 42.308 0.00 0.00 0.00 2.29
5199 5690 7.123697 CCTCCGTTCCATGATATAAGGTGTATA 59.876 40.741 0.00 0.00 0.00 1.47
5200 5691 8.063200 TCCGTTCCATGATATAAGGTGTATAG 57.937 38.462 0.00 0.00 0.00 1.31
5201 5692 7.891712 TCCGTTCCATGATATAAGGTGTATAGA 59.108 37.037 0.00 0.00 0.00 1.98
5202 5693 8.696374 CCGTTCCATGATATAAGGTGTATAGAT 58.304 37.037 0.00 0.00 0.00 1.98
5238 5729 7.715265 AGTCTGAAATATAAGGTGTATTGCG 57.285 36.000 0.00 0.00 0.00 4.85
5239 5730 7.272978 AGTCTGAAATATAAGGTGTATTGCGT 58.727 34.615 0.00 0.00 0.00 5.24
5240 5731 7.769044 AGTCTGAAATATAAGGTGTATTGCGTT 59.231 33.333 0.00 0.00 0.00 4.84
5241 5732 7.850982 GTCTGAAATATAAGGTGTATTGCGTTG 59.149 37.037 0.00 0.00 0.00 4.10
5242 5733 6.491394 TGAAATATAAGGTGTATTGCGTTGC 58.509 36.000 0.00 0.00 0.00 4.17
5243 5734 6.094186 TGAAATATAAGGTGTATTGCGTTGCA 59.906 34.615 0.00 0.00 36.47 4.08
5244 5735 3.757745 ATAAGGTGTATTGCGTTGCAC 57.242 42.857 0.00 0.00 38.71 4.57
5245 5736 4.859784 GGTGTATTGCGTTGCACC 57.140 55.556 9.58 9.58 43.52 5.01
5247 5738 3.086161 GTGTATTGCGTTGCACCAC 57.914 52.632 0.00 0.00 38.71 4.16
5248 5739 0.591170 GTGTATTGCGTTGCACCACT 59.409 50.000 0.00 0.00 38.71 4.00
5249 5740 0.871722 TGTATTGCGTTGCACCACTC 59.128 50.000 0.00 0.00 38.71 3.51
5250 5741 0.179225 GTATTGCGTTGCACCACTCG 60.179 55.000 0.00 0.00 38.71 4.18
5253 5744 3.649986 GCGTTGCACCACTCGCTT 61.650 61.111 10.55 0.00 44.28 4.68
5254 5745 2.249309 CGTTGCACCACTCGCTTG 59.751 61.111 0.00 0.00 0.00 4.01
5255 5746 2.639286 GTTGCACCACTCGCTTGG 59.361 61.111 0.00 0.84 43.04 3.61
5256 5747 1.891919 GTTGCACCACTCGCTTGGA 60.892 57.895 8.95 0.00 39.24 3.53
5257 5748 1.073025 TTGCACCACTCGCTTGGAT 59.927 52.632 8.95 0.00 39.24 3.41
5258 5749 0.323302 TTGCACCACTCGCTTGGATA 59.677 50.000 8.95 0.00 39.24 2.59
5259 5750 0.323302 TGCACCACTCGCTTGGATAA 59.677 50.000 8.95 0.00 39.24 1.75
5260 5751 1.065491 TGCACCACTCGCTTGGATAAT 60.065 47.619 8.95 0.00 39.24 1.28
5261 5752 2.017049 GCACCACTCGCTTGGATAATT 58.983 47.619 8.95 0.00 39.24 1.40
5262 5753 2.423538 GCACCACTCGCTTGGATAATTT 59.576 45.455 8.95 0.00 39.24 1.82
5263 5754 3.119495 GCACCACTCGCTTGGATAATTTT 60.119 43.478 8.95 0.00 39.24 1.82
5264 5755 4.618227 GCACCACTCGCTTGGATAATTTTT 60.618 41.667 8.95 0.00 39.24 1.94
5306 5797 6.936968 TTCCTTATATAGGGAAAGCTCCTC 57.063 41.667 20.83 0.00 44.86 3.71
5307 5798 6.234404 TCCTTATATAGGGAAAGCTCCTCT 57.766 41.667 11.04 0.00 44.86 3.69
5308 5799 7.358255 TCCTTATATAGGGAAAGCTCCTCTA 57.642 40.000 11.04 0.00 44.86 2.43
5309 5800 7.956357 TCCTTATATAGGGAAAGCTCCTCTAT 58.044 38.462 11.04 11.72 44.86 1.98
5310 5801 8.410623 TCCTTATATAGGGAAAGCTCCTCTATT 58.589 37.037 11.04 5.43 44.86 1.73
5311 5802 9.052365 CCTTATATAGGGAAAGCTCCTCTATTT 57.948 37.037 12.13 8.30 42.05 1.40
5334 5825 7.639113 TTTTTCAAGTCAATTAGTCAGGTGT 57.361 32.000 0.00 0.00 0.00 4.16
5335 5826 8.740123 TTTTTCAAGTCAATTAGTCAGGTGTA 57.260 30.769 0.00 0.00 0.00 2.90
5336 5827 8.740123 TTTTCAAGTCAATTAGTCAGGTGTAA 57.260 30.769 0.00 0.00 0.00 2.41
5337 5828 8.918202 TTTCAAGTCAATTAGTCAGGTGTAAT 57.082 30.769 0.00 0.00 0.00 1.89
5340 5831 9.817809 TCAAGTCAATTAGTCAGGTGTAATATC 57.182 33.333 0.00 0.00 0.00 1.63
5341 5832 8.755941 CAAGTCAATTAGTCAGGTGTAATATCG 58.244 37.037 0.00 0.00 0.00 2.92
5342 5833 6.924060 AGTCAATTAGTCAGGTGTAATATCGC 59.076 38.462 0.00 0.00 0.00 4.58
5343 5834 6.145696 GTCAATTAGTCAGGTGTAATATCGCC 59.854 42.308 0.00 0.00 38.17 5.54
5344 5835 4.595762 TTAGTCAGGTGTAATATCGCCC 57.404 45.455 0.00 0.00 38.61 6.13
5345 5836 2.394632 AGTCAGGTGTAATATCGCCCA 58.605 47.619 0.00 0.00 38.61 5.36
5346 5837 2.769663 AGTCAGGTGTAATATCGCCCAA 59.230 45.455 0.00 0.00 38.61 4.12
5347 5838 3.199071 AGTCAGGTGTAATATCGCCCAAA 59.801 43.478 0.00 0.00 38.61 3.28
5348 5839 3.942748 GTCAGGTGTAATATCGCCCAAAA 59.057 43.478 0.00 0.00 38.61 2.44
5349 5840 4.578928 GTCAGGTGTAATATCGCCCAAAAT 59.421 41.667 0.00 0.00 38.61 1.82
5350 5841 5.067283 GTCAGGTGTAATATCGCCCAAAATT 59.933 40.000 0.00 0.00 38.61 1.82
5351 5842 5.654650 TCAGGTGTAATATCGCCCAAAATTT 59.345 36.000 0.00 0.00 38.61 1.82
5352 5843 5.748152 CAGGTGTAATATCGCCCAAAATTTG 59.252 40.000 0.00 0.00 38.61 2.32
5353 5844 5.420739 AGGTGTAATATCGCCCAAAATTTGT 59.579 36.000 4.92 0.00 38.61 2.83
5354 5845 5.518487 GGTGTAATATCGCCCAAAATTTGTG 59.482 40.000 4.92 0.00 32.43 3.33
5355 5846 6.326375 GTGTAATATCGCCCAAAATTTGTGA 58.674 36.000 4.92 0.54 0.00 3.58
5356 5847 6.809196 GTGTAATATCGCCCAAAATTTGTGAA 59.191 34.615 4.92 0.00 0.00 3.18
5357 5848 7.329717 GTGTAATATCGCCCAAAATTTGTGAAA 59.670 33.333 4.92 0.00 0.00 2.69
5358 5849 8.037758 TGTAATATCGCCCAAAATTTGTGAAAT 58.962 29.630 4.92 0.00 0.00 2.17
5359 5850 7.920160 AATATCGCCCAAAATTTGTGAAATT 57.080 28.000 4.92 0.00 42.62 1.82
5370 5861 7.936496 AAATTTGTGAAATTTTCCCAACACT 57.064 28.000 6.55 0.00 46.01 3.55
5371 5862 7.936496 AATTTGTGAAATTTTCCCAACACTT 57.064 28.000 6.55 0.33 37.84 3.16
5372 5863 6.734104 TTTGTGAAATTTTCCCAACACTTG 57.266 33.333 6.55 0.00 26.71 3.16
5373 5864 4.187694 TGTGAAATTTTCCCAACACTTGC 58.812 39.130 6.68 0.00 0.00 4.01
5374 5865 3.245048 GTGAAATTTTCCCAACACTTGCG 59.755 43.478 6.68 0.00 0.00 4.85
5375 5866 3.118956 TGAAATTTTCCCAACACTTGCGT 60.119 39.130 6.68 0.00 0.00 5.24
5376 5867 3.535280 AATTTTCCCAACACTTGCGTT 57.465 38.095 0.00 0.00 0.00 4.84
5377 5868 2.570442 TTTTCCCAACACTTGCGTTC 57.430 45.000 0.00 0.00 0.00 3.95
5378 5869 1.757682 TTTCCCAACACTTGCGTTCT 58.242 45.000 0.00 0.00 0.00 3.01
5379 5870 1.757682 TTCCCAACACTTGCGTTCTT 58.242 45.000 0.00 0.00 0.00 2.52
5380 5871 1.757682 TCCCAACACTTGCGTTCTTT 58.242 45.000 0.00 0.00 0.00 2.52
5381 5872 2.920524 TCCCAACACTTGCGTTCTTTA 58.079 42.857 0.00 0.00 0.00 1.85
5382 5873 3.280295 TCCCAACACTTGCGTTCTTTAA 58.720 40.909 0.00 0.00 0.00 1.52
5383 5874 3.886505 TCCCAACACTTGCGTTCTTTAAT 59.113 39.130 0.00 0.00 0.00 1.40
5384 5875 4.339814 TCCCAACACTTGCGTTCTTTAATT 59.660 37.500 0.00 0.00 0.00 1.40
5385 5876 5.047188 CCCAACACTTGCGTTCTTTAATTT 58.953 37.500 0.00 0.00 0.00 1.82
5386 5877 5.522097 CCCAACACTTGCGTTCTTTAATTTT 59.478 36.000 0.00 0.00 0.00 1.82
5387 5878 6.036626 CCCAACACTTGCGTTCTTTAATTTTT 59.963 34.615 0.00 0.00 0.00 1.94
5388 5879 6.899243 CCAACACTTGCGTTCTTTAATTTTTG 59.101 34.615 0.00 0.00 0.00 2.44
5389 5880 7.412455 CCAACACTTGCGTTCTTTAATTTTTGT 60.412 33.333 0.00 0.00 0.00 2.83
5390 5881 7.216920 ACACTTGCGTTCTTTAATTTTTGTC 57.783 32.000 0.00 0.00 0.00 3.18
5391 5882 6.254804 ACACTTGCGTTCTTTAATTTTTGTCC 59.745 34.615 0.00 0.00 0.00 4.02
5392 5883 5.751509 ACTTGCGTTCTTTAATTTTTGTCCC 59.248 36.000 0.00 0.00 0.00 4.46
5393 5884 5.263968 TGCGTTCTTTAATTTTTGTCCCA 57.736 34.783 0.00 0.00 0.00 4.37
5394 5885 5.661458 TGCGTTCTTTAATTTTTGTCCCAA 58.339 33.333 0.00 0.00 0.00 4.12
5395 5886 6.106673 TGCGTTCTTTAATTTTTGTCCCAAA 58.893 32.000 0.00 0.00 0.00 3.28
5396 5887 6.594159 TGCGTTCTTTAATTTTTGTCCCAAAA 59.406 30.769 0.00 0.00 0.00 2.44
5397 5888 7.119262 TGCGTTCTTTAATTTTTGTCCCAAAAA 59.881 29.630 14.95 14.95 34.15 1.94
5398 5889 7.427030 GCGTTCTTTAATTTTTGTCCCAAAAAC 59.573 33.333 14.92 2.95 32.67 2.43
5399 5890 8.661257 CGTTCTTTAATTTTTGTCCCAAAAACT 58.339 29.630 14.92 8.69 32.67 2.66
5406 5897 8.896320 AATTTTTGTCCCAAAAACTATACACC 57.104 30.769 14.92 0.00 32.67 4.16
5407 5898 6.408107 TTTTGTCCCAAAAACTATACACCC 57.592 37.500 0.00 0.00 0.00 4.61
5408 5899 5.327737 TTGTCCCAAAAACTATACACCCT 57.672 39.130 0.00 0.00 0.00 4.34
5409 5900 6.451292 TTGTCCCAAAAACTATACACCCTA 57.549 37.500 0.00 0.00 0.00 3.53
5410 5901 6.645884 TGTCCCAAAAACTATACACCCTAT 57.354 37.500 0.00 0.00 0.00 2.57
5411 5902 7.752518 TGTCCCAAAAACTATACACCCTATA 57.247 36.000 0.00 0.00 0.00 1.31
5455 5946 3.816994 ACTGTCCAACCCTTACAAGAAC 58.183 45.455 0.00 0.00 0.00 3.01
5496 5987 9.574516 AGAAAATAACACATACTTCCTCTGTTT 57.425 29.630 0.00 0.00 0.00 2.83
5497 5988 9.827411 GAAAATAACACATACTTCCTCTGTTTC 57.173 33.333 0.00 0.00 0.00 2.78
5498 5989 8.918202 AAATAACACATACTTCCTCTGTTTCA 57.082 30.769 0.00 0.00 0.00 2.69
5499 5990 8.918202 AATAACACATACTTCCTCTGTTTCAA 57.082 30.769 0.00 0.00 0.00 2.69
5500 5991 8.918202 ATAACACATACTTCCTCTGTTTCAAA 57.082 30.769 0.00 0.00 0.00 2.69
5501 5992 7.639113 AACACATACTTCCTCTGTTTCAAAA 57.361 32.000 0.00 0.00 0.00 2.44
5502 5993 7.823745 ACACATACTTCCTCTGTTTCAAAAT 57.176 32.000 0.00 0.00 0.00 1.82
5503 5994 8.918202 ACACATACTTCCTCTGTTTCAAAATA 57.082 30.769 0.00 0.00 0.00 1.40
5504 5995 8.784043 ACACATACTTCCTCTGTTTCAAAATAC 58.216 33.333 0.00 0.00 0.00 1.89
5505 5996 9.003658 CACATACTTCCTCTGTTTCAAAATACT 57.996 33.333 0.00 0.00 0.00 2.12
5506 5997 9.574516 ACATACTTCCTCTGTTTCAAAATACTT 57.425 29.630 0.00 0.00 0.00 2.24
5507 5998 9.831737 CATACTTCCTCTGTTTCAAAATACTTG 57.168 33.333 0.00 0.00 0.00 3.16
5508 5999 9.793259 ATACTTCCTCTGTTTCAAAATACTTGA 57.207 29.630 0.00 0.00 0.00 3.02
5509 6000 7.931275 ACTTCCTCTGTTTCAAAATACTTGAC 58.069 34.615 0.00 0.00 0.00 3.18
5510 6001 7.775561 ACTTCCTCTGTTTCAAAATACTTGACT 59.224 33.333 0.00 0.00 0.00 3.41
5511 6002 8.519799 TTCCTCTGTTTCAAAATACTTGACTT 57.480 30.769 0.00 0.00 0.00 3.01
5512 6003 8.519799 TCCTCTGTTTCAAAATACTTGACTTT 57.480 30.769 0.00 0.00 0.00 2.66
5513 6004 8.621286 TCCTCTGTTTCAAAATACTTGACTTTC 58.379 33.333 0.00 0.00 0.00 2.62
5514 6005 8.405531 CCTCTGTTTCAAAATACTTGACTTTCA 58.594 33.333 0.00 0.00 0.00 2.69
5515 6006 9.956720 CTCTGTTTCAAAATACTTGACTTTCAT 57.043 29.630 0.00 0.00 0.00 2.57
5521 6012 9.528018 TTCAAAATACTTGACTTTCATTTGTCC 57.472 29.630 0.00 0.00 28.84 4.02
5522 6013 8.690884 TCAAAATACTTGACTTTCATTTGTCCA 58.309 29.630 0.00 0.00 28.84 4.02
5523 6014 9.311916 CAAAATACTTGACTTTCATTTGTCCAA 57.688 29.630 0.00 0.00 32.67 3.53
5524 6015 9.883142 AAAATACTTGACTTTCATTTGTCCAAA 57.117 25.926 0.00 0.00 32.67 3.28
5525 6016 9.883142 AAATACTTGACTTTCATTTGTCCAAAA 57.117 25.926 0.00 0.00 33.56 2.44
5526 6017 9.883142 AATACTTGACTTTCATTTGTCCAAAAA 57.117 25.926 0.00 0.00 33.56 1.94
5528 6019 8.200364 ACTTGACTTTCATTTGTCCAAAAATG 57.800 30.769 3.76 3.76 45.10 2.32
5539 6030 9.874205 CATTTGTCCAAAAATGAATGTACCTAT 57.126 29.630 4.06 0.00 46.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.392510 GTGGTACGTTCGGCAAATCTC 59.607 52.381 0.00 0.00 0.00 2.75
3 4 0.319727 TCGTGGTACGTTCGGCAAAT 60.320 50.000 0.00 0.00 43.14 2.32
4 5 1.067084 TCGTGGTACGTTCGGCAAA 59.933 52.632 0.00 0.00 43.14 3.68
5 6 1.661197 GTCGTGGTACGTTCGGCAA 60.661 57.895 0.00 0.00 43.14 4.52
6 7 2.050168 GTCGTGGTACGTTCGGCA 60.050 61.111 0.00 0.00 43.14 5.69
7 8 3.167945 CGTCGTGGTACGTTCGGC 61.168 66.667 0.00 0.00 43.14 5.54
8 9 2.502510 CCGTCGTGGTACGTTCGG 60.503 66.667 18.71 18.71 45.74 4.30
9 10 3.167945 GCCGTCGTGGTACGTTCG 61.168 66.667 0.00 7.70 43.14 3.95
10 11 3.167945 CGCCGTCGTGGTACGTTC 61.168 66.667 0.00 0.00 43.14 3.95
64 65 0.667792 AGCTCCGAAAGAACGCTCAC 60.668 55.000 0.00 0.00 0.00 3.51
65 66 0.667487 CAGCTCCGAAAGAACGCTCA 60.667 55.000 0.00 0.00 0.00 4.26
66 67 1.355066 CCAGCTCCGAAAGAACGCTC 61.355 60.000 0.00 0.00 0.00 5.03
67 68 1.374758 CCAGCTCCGAAAGAACGCT 60.375 57.895 0.00 0.00 0.00 5.07
68 69 3.028366 GCCAGCTCCGAAAGAACGC 62.028 63.158 0.00 0.00 0.00 4.84
69 70 2.730672 CGCCAGCTCCGAAAGAACG 61.731 63.158 0.00 0.00 0.00 3.95
70 71 2.391389 CCGCCAGCTCCGAAAGAAC 61.391 63.158 4.95 0.00 0.00 3.01
71 72 2.047274 CCGCCAGCTCCGAAAGAA 60.047 61.111 4.95 0.00 0.00 2.52
72 73 4.760047 GCCGCCAGCTCCGAAAGA 62.760 66.667 4.95 0.00 38.99 2.52
88 89 4.821589 CGTTCCCAGGCTCTCCGC 62.822 72.222 0.00 0.00 37.47 5.54
89 90 4.148825 CCGTTCCCAGGCTCTCCG 62.149 72.222 0.00 0.00 37.47 4.63
116 117 4.681978 AGCTCCGTTGTCGTGCCC 62.682 66.667 0.00 0.00 36.09 5.36
117 118 3.414700 CAGCTCCGTTGTCGTGCC 61.415 66.667 0.00 0.00 36.09 5.01
118 119 4.077188 GCAGCTCCGTTGTCGTGC 62.077 66.667 0.00 0.00 35.86 5.34
119 120 3.767230 CGCAGCTCCGTTGTCGTG 61.767 66.667 0.00 0.00 35.01 4.35
120 121 3.898627 CTCGCAGCTCCGTTGTCGT 62.899 63.158 0.00 0.00 35.01 4.34
121 122 3.175240 CTCGCAGCTCCGTTGTCG 61.175 66.667 0.00 0.00 0.00 4.35
122 123 3.482783 GCTCGCAGCTCCGTTGTC 61.483 66.667 0.00 0.00 38.45 3.18
132 133 4.498520 ATGTCGTCCGGCTCGCAG 62.499 66.667 12.69 0.00 0.00 5.18
133 134 4.794439 CATGTCGTCCGGCTCGCA 62.794 66.667 12.69 13.38 0.00 5.10
135 136 3.758088 CTCCATGTCGTCCGGCTCG 62.758 68.421 11.57 11.57 0.00 5.03
136 137 2.105128 CTCCATGTCGTCCGGCTC 59.895 66.667 0.00 0.00 0.00 4.70
476 477 1.073603 CCACCCCAAATTGCACCAAAT 59.926 47.619 0.00 0.00 0.00 2.32
477 478 0.471617 CCACCCCAAATTGCACCAAA 59.528 50.000 0.00 0.00 0.00 3.28
478 479 1.414061 CCCACCCCAAATTGCACCAA 61.414 55.000 0.00 0.00 0.00 3.67
479 480 1.840650 CCCACCCCAAATTGCACCA 60.841 57.895 0.00 0.00 0.00 4.17
480 481 1.414866 AACCCACCCCAAATTGCACC 61.415 55.000 0.00 0.00 0.00 5.01
481 482 0.250252 CAACCCACCCCAAATTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
482 483 0.692419 ACAACCCACCCCAAATTGCA 60.692 50.000 0.00 0.00 0.00 4.08
483 484 0.034756 GACAACCCACCCCAAATTGC 59.965 55.000 0.00 0.00 0.00 3.56
484 485 0.316841 CGACAACCCACCCCAAATTG 59.683 55.000 0.00 0.00 0.00 2.32
485 486 0.830023 CCGACAACCCACCCCAAATT 60.830 55.000 0.00 0.00 0.00 1.82
486 487 1.228737 CCGACAACCCACCCCAAAT 60.229 57.895 0.00 0.00 0.00 2.32
487 488 1.721093 ATCCGACAACCCACCCCAAA 61.721 55.000 0.00 0.00 0.00 3.28
488 489 2.132089 GATCCGACAACCCACCCCAA 62.132 60.000 0.00 0.00 0.00 4.12
489 490 2.530661 ATCCGACAACCCACCCCA 60.531 61.111 0.00 0.00 0.00 4.96
490 491 2.271173 GATCCGACAACCCACCCC 59.729 66.667 0.00 0.00 0.00 4.95
491 492 1.921869 ATGGATCCGACAACCCACCC 61.922 60.000 7.39 0.00 0.00 4.61
492 493 0.034477 AATGGATCCGACAACCCACC 60.034 55.000 7.39 0.00 0.00 4.61
493 494 1.094785 CAATGGATCCGACAACCCAC 58.905 55.000 7.39 0.00 0.00 4.61
494 495 0.695924 ACAATGGATCCGACAACCCA 59.304 50.000 7.39 0.00 0.00 4.51
495 496 1.094785 CACAATGGATCCGACAACCC 58.905 55.000 7.39 0.00 0.00 4.11
496 497 1.094785 CCACAATGGATCCGACAACC 58.905 55.000 7.39 0.00 40.96 3.77
497 498 0.451783 GCCACAATGGATCCGACAAC 59.548 55.000 7.39 0.00 40.96 3.32
498 499 1.024046 CGCCACAATGGATCCGACAA 61.024 55.000 7.39 0.00 40.96 3.18
499 500 1.449423 CGCCACAATGGATCCGACA 60.449 57.895 7.39 0.00 40.96 4.35
500 501 2.180204 CCGCCACAATGGATCCGAC 61.180 63.158 7.39 0.00 40.96 4.79
501 502 2.189257 CCGCCACAATGGATCCGA 59.811 61.111 7.39 0.00 40.96 4.55
502 503 2.901840 CCCGCCACAATGGATCCG 60.902 66.667 7.39 0.00 40.96 4.18
503 504 3.219198 GCCCGCCACAATGGATCC 61.219 66.667 4.20 4.20 40.96 3.36
504 505 3.585990 CGCCCGCCACAATGGATC 61.586 66.667 0.00 0.00 40.96 3.36
505 506 4.424711 ACGCCCGCCACAATGGAT 62.425 61.111 0.00 0.00 40.96 3.41
508 509 4.101790 GACACGCCCGCCACAATG 62.102 66.667 0.00 0.00 0.00 2.82
527 528 2.597510 GGTGAATATGGGGCGCCC 60.598 66.667 38.57 38.57 45.71 6.13
528 529 1.774894 TAGGGTGAATATGGGGCGCC 61.775 60.000 21.18 21.18 0.00 6.53
529 530 0.328258 ATAGGGTGAATATGGGGCGC 59.672 55.000 0.00 0.00 0.00 6.53
530 531 4.503714 AATATAGGGTGAATATGGGGCG 57.496 45.455 0.00 0.00 0.00 6.13
531 532 4.956075 CCAAATATAGGGTGAATATGGGGC 59.044 45.833 0.00 0.00 0.00 5.80
532 533 5.518865 CCCAAATATAGGGTGAATATGGGG 58.481 45.833 5.21 0.00 41.61 4.96
544 545 4.386761 CCCCATATCCAGCCCAAATATAGG 60.387 50.000 0.00 0.00 0.00 2.57
545 546 4.230502 ACCCCATATCCAGCCCAAATATAG 59.769 45.833 0.00 0.00 0.00 1.31
546 547 4.017591 CACCCCATATCCAGCCCAAATATA 60.018 45.833 0.00 0.00 0.00 0.86
547 548 3.003270 ACCCCATATCCAGCCCAAATAT 58.997 45.455 0.00 0.00 0.00 1.28
548 549 2.109834 CACCCCATATCCAGCCCAAATA 59.890 50.000 0.00 0.00 0.00 1.40
549 550 1.133072 CACCCCATATCCAGCCCAAAT 60.133 52.381 0.00 0.00 0.00 2.32
550 551 0.261402 CACCCCATATCCAGCCCAAA 59.739 55.000 0.00 0.00 0.00 3.28
551 552 1.929745 CACCCCATATCCAGCCCAA 59.070 57.895 0.00 0.00 0.00 4.12
552 553 2.766925 GCACCCCATATCCAGCCCA 61.767 63.158 0.00 0.00 0.00 5.36
553 554 2.116125 GCACCCCATATCCAGCCC 59.884 66.667 0.00 0.00 0.00 5.19
554 555 2.116125 GGCACCCCATATCCAGCC 59.884 66.667 0.00 0.00 34.71 4.85
555 556 2.281761 CGGCACCCCATATCCAGC 60.282 66.667 0.00 0.00 0.00 4.85
556 557 2.116983 CTCCGGCACCCCATATCCAG 62.117 65.000 0.00 0.00 0.00 3.86
557 558 2.040359 TCCGGCACCCCATATCCA 60.040 61.111 0.00 0.00 0.00 3.41
558 559 2.750350 CTCCGGCACCCCATATCC 59.250 66.667 0.00 0.00 0.00 2.59
559 560 2.750350 CCTCCGGCACCCCATATC 59.250 66.667 0.00 0.00 0.00 1.63
572 573 1.452108 CTCAAATGTCCGGGCCTCC 60.452 63.158 2.12 0.00 0.00 4.30
573 574 1.452108 CCTCAAATGTCCGGGCCTC 60.452 63.158 2.12 0.00 0.00 4.70
574 575 2.677228 CCTCAAATGTCCGGGCCT 59.323 61.111 2.12 0.00 0.00 5.19
575 576 2.440247 CCCTCAAATGTCCGGGCC 60.440 66.667 2.12 0.00 0.00 5.80
577 578 2.440247 GGCCCTCAAATGTCCGGG 60.440 66.667 0.00 0.00 39.76 5.73
578 579 2.824041 CGGCCCTCAAATGTCCGG 60.824 66.667 0.00 0.00 36.73 5.14
579 580 1.241315 AAACGGCCCTCAAATGTCCG 61.241 55.000 0.00 0.00 45.04 4.79
580 581 0.243636 CAAACGGCCCTCAAATGTCC 59.756 55.000 0.00 0.00 0.00 4.02
581 582 1.200020 CTCAAACGGCCCTCAAATGTC 59.800 52.381 0.00 0.00 0.00 3.06
582 583 1.202879 TCTCAAACGGCCCTCAAATGT 60.203 47.619 0.00 0.00 0.00 2.71
583 584 1.533625 TCTCAAACGGCCCTCAAATG 58.466 50.000 0.00 0.00 0.00 2.32
584 585 2.162681 CTTCTCAAACGGCCCTCAAAT 58.837 47.619 0.00 0.00 0.00 2.32
585 586 1.142060 TCTTCTCAAACGGCCCTCAAA 59.858 47.619 0.00 0.00 0.00 2.69
586 587 0.762418 TCTTCTCAAACGGCCCTCAA 59.238 50.000 0.00 0.00 0.00 3.02
587 588 0.034896 GTCTTCTCAAACGGCCCTCA 59.965 55.000 0.00 0.00 0.00 3.86
588 589 0.321996 AGTCTTCTCAAACGGCCCTC 59.678 55.000 0.00 0.00 0.00 4.30
589 590 0.035458 CAGTCTTCTCAAACGGCCCT 59.965 55.000 0.00 0.00 0.00 5.19
590 591 0.034896 TCAGTCTTCTCAAACGGCCC 59.965 55.000 0.00 0.00 0.00 5.80
591 592 2.100605 ATCAGTCTTCTCAAACGGCC 57.899 50.000 0.00 0.00 0.00 6.13
592 593 3.067106 TCAATCAGTCTTCTCAAACGGC 58.933 45.455 0.00 0.00 0.00 5.68
593 594 4.310769 ACTCAATCAGTCTTCTCAAACGG 58.689 43.478 0.00 0.00 0.00 4.44
618 619 2.878406 CCACTGACTGGTCACGATTTTT 59.122 45.455 0.00 0.00 34.90 1.94
619 620 2.494059 CCACTGACTGGTCACGATTTT 58.506 47.619 0.00 0.00 34.90 1.82
620 621 1.878102 GCCACTGACTGGTCACGATTT 60.878 52.381 0.00 0.00 42.99 2.17
621 622 0.320771 GCCACTGACTGGTCACGATT 60.321 55.000 0.00 0.00 42.99 3.34
622 623 1.293498 GCCACTGACTGGTCACGAT 59.707 57.895 0.00 0.00 42.99 3.73
623 624 2.734591 GCCACTGACTGGTCACGA 59.265 61.111 0.00 0.00 42.99 4.35
624 625 2.734723 CGCCACTGACTGGTCACG 60.735 66.667 0.00 0.00 42.99 4.35
625 626 2.357517 CCGCCACTGACTGGTCAC 60.358 66.667 0.00 0.00 42.99 3.67
626 627 4.314440 GCCGCCACTGACTGGTCA 62.314 66.667 3.34 3.34 42.99 4.02
641 642 2.357517 CATATGCTCGGACGGGCC 60.358 66.667 14.60 0.00 41.82 5.80
642 643 1.373497 CTCATATGCTCGGACGGGC 60.373 63.158 10.05 10.05 43.05 6.13
643 644 0.039074 GTCTCATATGCTCGGACGGG 60.039 60.000 0.00 0.00 0.00 5.28
644 645 0.386100 CGTCTCATATGCTCGGACGG 60.386 60.000 21.14 10.71 43.69 4.79
645 646 0.386100 CCGTCTCATATGCTCGGACG 60.386 60.000 20.27 20.97 45.92 4.79
646 647 0.952280 TCCGTCTCATATGCTCGGAC 59.048 55.000 22.17 14.94 44.04 4.79
647 648 3.414486 TCCGTCTCATATGCTCGGA 57.586 52.632 22.17 22.17 46.14 4.55
648 649 2.732412 AATCCGTCTCATATGCTCGG 57.268 50.000 19.44 19.44 42.12 4.63
649 650 3.642705 TCAAATCCGTCTCATATGCTCG 58.357 45.455 0.00 2.76 0.00 5.03
650 651 4.876125 TCTCAAATCCGTCTCATATGCTC 58.124 43.478 0.00 0.00 0.00 4.26
651 652 4.262377 CCTCTCAAATCCGTCTCATATGCT 60.262 45.833 0.00 0.00 0.00 3.79
652 653 3.993081 CCTCTCAAATCCGTCTCATATGC 59.007 47.826 0.00 0.00 0.00 3.14
653 654 5.207110 ACCTCTCAAATCCGTCTCATATG 57.793 43.478 0.00 0.00 0.00 1.78
654 655 4.282195 GGACCTCTCAAATCCGTCTCATAT 59.718 45.833 0.00 0.00 0.00 1.78
655 656 3.637229 GGACCTCTCAAATCCGTCTCATA 59.363 47.826 0.00 0.00 0.00 2.15
656 657 2.432510 GGACCTCTCAAATCCGTCTCAT 59.567 50.000 0.00 0.00 0.00 2.90
657 658 1.825474 GGACCTCTCAAATCCGTCTCA 59.175 52.381 0.00 0.00 0.00 3.27
658 659 2.588027 GGACCTCTCAAATCCGTCTC 57.412 55.000 0.00 0.00 0.00 3.36
663 664 6.591750 TCTATAATCGGACCTCTCAAATCC 57.408 41.667 0.00 0.00 0.00 3.01
664 665 6.533367 GCATCTATAATCGGACCTCTCAAATC 59.467 42.308 0.00 0.00 0.00 2.17
665 666 6.212388 AGCATCTATAATCGGACCTCTCAAAT 59.788 38.462 0.00 0.00 0.00 2.32
666 667 5.540337 AGCATCTATAATCGGACCTCTCAAA 59.460 40.000 0.00 0.00 0.00 2.69
667 668 5.080337 AGCATCTATAATCGGACCTCTCAA 58.920 41.667 0.00 0.00 0.00 3.02
668 669 4.667573 AGCATCTATAATCGGACCTCTCA 58.332 43.478 0.00 0.00 0.00 3.27
669 670 5.652994 AAGCATCTATAATCGGACCTCTC 57.347 43.478 0.00 0.00 0.00 3.20
670 671 7.451877 TCTTAAAGCATCTATAATCGGACCTCT 59.548 37.037 0.00 0.00 0.00 3.69
671 672 7.603651 TCTTAAAGCATCTATAATCGGACCTC 58.396 38.462 0.00 0.00 0.00 3.85
672 673 7.540474 TCTTAAAGCATCTATAATCGGACCT 57.460 36.000 0.00 0.00 0.00 3.85
673 674 7.820044 CTCTTAAAGCATCTATAATCGGACC 57.180 40.000 0.00 0.00 0.00 4.46
698 699 1.226156 CGACCTGAGCGTCTTCTCG 60.226 63.158 0.86 0.00 35.90 4.04
699 700 1.515304 GCGACCTGAGCGTCTTCTC 60.515 63.158 0.00 0.00 0.00 2.87
700 701 2.569134 GCGACCTGAGCGTCTTCT 59.431 61.111 0.00 0.00 0.00 2.85
701 702 2.507324 GGCGACCTGAGCGTCTTC 60.507 66.667 0.00 0.00 35.00 2.87
702 703 3.303135 TGGCGACCTGAGCGTCTT 61.303 61.111 0.00 0.00 33.92 3.01
703 704 4.057428 GTGGCGACCTGAGCGTCT 62.057 66.667 0.00 0.00 33.92 4.18
708 709 2.507110 AATCACCGTGGCGACCTGAG 62.507 60.000 0.00 0.00 0.00 3.35
709 710 2.579657 AATCACCGTGGCGACCTGA 61.580 57.895 0.00 0.00 0.00 3.86
710 711 2.047274 AATCACCGTGGCGACCTG 60.047 61.111 0.00 0.00 0.00 4.00
711 712 2.047274 CAATCACCGTGGCGACCT 60.047 61.111 0.00 0.00 0.00 3.85
712 713 2.047655 TCAATCACCGTGGCGACC 60.048 61.111 0.00 0.00 0.00 4.79
713 714 2.100631 CCTCAATCACCGTGGCGAC 61.101 63.158 0.00 0.00 0.00 5.19
723 724 1.304381 GGCCAGCCAACCTCAATCA 60.304 57.895 3.12 0.00 35.81 2.57
738 739 0.679505 GGGGTTTTTGTCTTCTGGCC 59.320 55.000 0.00 0.00 0.00 5.36
755 756 0.750850 TTTTATCTCGCTCGAGGGGG 59.249 55.000 27.01 24.97 42.20 5.40
789 790 1.320344 TGACGGTTAGGATCGCAGCT 61.320 55.000 0.00 0.00 0.00 4.24
920 928 2.546162 GGGAAGAAGGCTATGCGAGTAC 60.546 54.545 0.00 0.00 0.00 2.73
921 929 1.687123 GGGAAGAAGGCTATGCGAGTA 59.313 52.381 0.00 0.00 0.00 2.59
922 930 0.466124 GGGAAGAAGGCTATGCGAGT 59.534 55.000 0.00 0.00 0.00 4.18
1048 1056 3.464111 AAAAACGAACGAGAGAGGGAA 57.536 42.857 0.14 0.00 0.00 3.97
1184 1194 2.103934 CCGGAGAAGCGAGCAGAG 59.896 66.667 0.00 0.00 0.00 3.35
1315 1329 2.930826 TCCACCAAGTTTCACTCCTC 57.069 50.000 0.00 0.00 0.00 3.71
1470 1484 8.691661 TCTTTCTATTTATAGAACATTGGGGC 57.308 34.615 10.86 0.00 45.99 5.80
2589 2635 6.295292 GGAAATGTGAAAGCTTATGGGAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
2755 2808 1.952990 CTCAGCTCCGCAATCTAGAGA 59.047 52.381 0.00 0.00 0.00 3.10
2756 2809 1.952990 TCTCAGCTCCGCAATCTAGAG 59.047 52.381 0.00 0.00 0.00 2.43
2842 2895 2.278596 CATACTCCGACGGGTGCG 60.279 66.667 15.25 3.03 33.83 5.34
3066 3120 8.397906 TGCATATCATAGCTTGTTTTTCTACAC 58.602 33.333 0.00 0.00 0.00 2.90
3125 3179 4.715713 TGCCGCGATATCCTATCTAGTAT 58.284 43.478 8.23 0.00 0.00 2.12
3372 3426 2.510691 CAATAACGGGCTCGGCGT 60.511 61.111 12.42 0.00 41.39 5.68
3383 3437 0.179054 GACTCGGGAGGCCCAATAAC 60.179 60.000 0.00 0.00 45.83 1.89
3450 3504 2.882137 CGACACCCAAGAAAAGCCTAAA 59.118 45.455 0.00 0.00 0.00 1.85
3674 4155 3.326006 TGAGAGAGCAACCAAGAACAGAT 59.674 43.478 0.00 0.00 0.00 2.90
3707 4189 1.226575 CGCAGGACGCACGATCTAA 60.227 57.895 0.00 0.00 42.60 2.10
3913 4395 4.091424 GCAGTTGAGCTAAAAGCATAACG 58.909 43.478 4.93 4.50 45.56 3.18
3987 4470 9.467258 AAAGAAACAATATGAACTGATGTGTTG 57.533 29.630 0.00 0.00 0.00 3.33
4041 4526 0.596082 GCTTGCCTCGCCTTTGTTTA 59.404 50.000 0.00 0.00 0.00 2.01
4058 4543 8.314751 ACTACAACATAAACTCTAGTCAATGCT 58.685 33.333 0.00 0.00 0.00 3.79
4236 4721 2.103373 CATCTTGAGGACGAGGAAGGA 58.897 52.381 0.00 0.00 0.00 3.36
4281 4766 1.625818 AGATCGGCCATATCCCTCAAC 59.374 52.381 2.24 0.00 0.00 3.18
4525 5011 3.910170 CAGTTCATGAGAAATTGCACACG 59.090 43.478 0.00 0.00 35.08 4.49
4672 5162 7.793036 AGTCCAATGGAAAGATTACTACCTAC 58.207 38.462 2.31 0.00 31.38 3.18
4945 5435 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4946 5436 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4947 5437 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4948 5438 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4949 5439 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4950 5440 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4951 5441 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4952 5442 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4953 5443 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4954 5444 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4955 5445 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4956 5446 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4957 5447 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4958 5448 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4961 5451 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4962 5452 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
4963 5453 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
4964 5454 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
4965 5455 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
4966 5456 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4967 5457 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
4968 5458 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
4969 5459 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
4982 5472 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4983 5473 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
4984 5474 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
4985 5475 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4986 5476 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4987 5477 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4990 5480 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4991 5481 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4992 5482 7.468084 GCCCATAATATAAGAGCGTTTTTGACA 60.468 37.037 0.00 0.00 0.00 3.58
4993 5483 6.856426 GCCCATAATATAAGAGCGTTTTTGAC 59.144 38.462 0.00 0.00 0.00 3.18
4994 5484 6.293190 CGCCCATAATATAAGAGCGTTTTTGA 60.293 38.462 0.00 0.00 37.47 2.69
4995 5485 5.851177 CGCCCATAATATAAGAGCGTTTTTG 59.149 40.000 0.00 0.00 37.47 2.44
4996 5486 5.048991 CCGCCCATAATATAAGAGCGTTTTT 60.049 40.000 0.00 0.00 40.43 1.94
4997 5487 4.454504 CCGCCCATAATATAAGAGCGTTTT 59.545 41.667 0.00 0.00 40.43 2.43
4998 5488 4.000988 CCGCCCATAATATAAGAGCGTTT 58.999 43.478 0.00 0.00 40.43 3.60
4999 5489 3.259876 TCCGCCCATAATATAAGAGCGTT 59.740 43.478 0.00 0.00 40.43 4.84
5000 5490 2.829720 TCCGCCCATAATATAAGAGCGT 59.170 45.455 0.00 0.00 40.43 5.07
5001 5491 3.448686 CTCCGCCCATAATATAAGAGCG 58.551 50.000 0.00 0.00 41.62 5.03
5002 5492 3.432326 CCCTCCGCCCATAATATAAGAGC 60.432 52.174 0.00 0.00 0.00 4.09
5003 5493 4.030913 TCCCTCCGCCCATAATATAAGAG 58.969 47.826 0.00 0.00 0.00 2.85
5004 5494 4.030913 CTCCCTCCGCCCATAATATAAGA 58.969 47.826 0.00 0.00 0.00 2.10
5005 5495 3.775316 ACTCCCTCCGCCCATAATATAAG 59.225 47.826 0.00 0.00 0.00 1.73
5006 5496 3.798515 ACTCCCTCCGCCCATAATATAA 58.201 45.455 0.00 0.00 0.00 0.98
5007 5497 3.484953 ACTCCCTCCGCCCATAATATA 57.515 47.619 0.00 0.00 0.00 0.86
5008 5498 2.344093 ACTCCCTCCGCCCATAATAT 57.656 50.000 0.00 0.00 0.00 1.28
5009 5499 2.111255 ACTACTCCCTCCGCCCATAATA 59.889 50.000 0.00 0.00 0.00 0.98
5010 5500 1.132817 ACTACTCCCTCCGCCCATAAT 60.133 52.381 0.00 0.00 0.00 1.28
5011 5501 0.263765 ACTACTCCCTCCGCCCATAA 59.736 55.000 0.00 0.00 0.00 1.90
5012 5502 0.263765 AACTACTCCCTCCGCCCATA 59.736 55.000 0.00 0.00 0.00 2.74
5013 5503 0.263765 TAACTACTCCCTCCGCCCAT 59.736 55.000 0.00 0.00 0.00 4.00
5014 5504 0.685458 GTAACTACTCCCTCCGCCCA 60.685 60.000 0.00 0.00 0.00 5.36
5015 5505 1.732417 CGTAACTACTCCCTCCGCCC 61.732 65.000 0.00 0.00 0.00 6.13
5016 5506 0.749454 TCGTAACTACTCCCTCCGCC 60.749 60.000 0.00 0.00 0.00 6.13
5017 5507 1.065251 CTTCGTAACTACTCCCTCCGC 59.935 57.143 0.00 0.00 0.00 5.54
5018 5508 1.674962 CCTTCGTAACTACTCCCTCCG 59.325 57.143 0.00 0.00 0.00 4.63
5019 5509 2.732763 ACCTTCGTAACTACTCCCTCC 58.267 52.381 0.00 0.00 0.00 4.30
5020 5510 4.522114 ACTACCTTCGTAACTACTCCCTC 58.478 47.826 0.00 0.00 0.00 4.30
5021 5511 4.582973 ACTACCTTCGTAACTACTCCCT 57.417 45.455 0.00 0.00 0.00 4.20
5022 5512 4.576873 GGTACTACCTTCGTAACTACTCCC 59.423 50.000 0.00 0.00 34.73 4.30
5023 5513 5.743026 GGTACTACCTTCGTAACTACTCC 57.257 47.826 0.00 0.00 34.73 3.85
5082 5573 4.041049 TGCACAAAACATTACAAAGCTCG 58.959 39.130 0.00 0.00 0.00 5.03
5170 5661 4.081420 CCTTATATCATGGAACGGAGGGAG 60.081 50.000 0.00 0.00 0.00 4.30
5171 5662 3.838317 CCTTATATCATGGAACGGAGGGA 59.162 47.826 0.00 0.00 0.00 4.20
5172 5663 3.583086 ACCTTATATCATGGAACGGAGGG 59.417 47.826 0.00 0.00 0.00 4.30
5173 5664 4.040461 ACACCTTATATCATGGAACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
5174 5665 5.215252 ACACCTTATATCATGGAACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
5175 5666 6.928348 ATACACCTTATATCATGGAACGGA 57.072 37.500 0.00 0.00 0.00 4.69
5176 5667 8.063200 TCTATACACCTTATATCATGGAACGG 57.937 38.462 0.00 0.00 0.00 4.44
5212 5703 8.612619 CGCAATACACCTTATATTTCAGACTTT 58.387 33.333 0.00 0.00 0.00 2.66
5213 5704 7.769044 ACGCAATACACCTTATATTTCAGACTT 59.231 33.333 0.00 0.00 0.00 3.01
5214 5705 7.272978 ACGCAATACACCTTATATTTCAGACT 58.727 34.615 0.00 0.00 0.00 3.24
5215 5706 7.478520 ACGCAATACACCTTATATTTCAGAC 57.521 36.000 0.00 0.00 0.00 3.51
5216 5707 7.466725 GCAACGCAATACACCTTATATTTCAGA 60.467 37.037 0.00 0.00 0.00 3.27
5217 5708 6.632834 GCAACGCAATACACCTTATATTTCAG 59.367 38.462 0.00 0.00 0.00 3.02
5218 5709 6.094186 TGCAACGCAATACACCTTATATTTCA 59.906 34.615 0.00 0.00 34.76 2.69
5219 5710 6.413818 GTGCAACGCAATACACCTTATATTTC 59.586 38.462 0.00 0.00 41.47 2.17
5220 5711 6.262601 GTGCAACGCAATACACCTTATATTT 58.737 36.000 0.00 0.00 41.47 1.40
5221 5712 5.816919 GTGCAACGCAATACACCTTATATT 58.183 37.500 0.00 0.00 41.47 1.28
5222 5713 5.418310 GTGCAACGCAATACACCTTATAT 57.582 39.130 0.00 0.00 41.47 0.86
5223 5714 4.868450 GTGCAACGCAATACACCTTATA 57.132 40.909 0.00 0.00 41.47 0.98
5224 5715 3.757745 GTGCAACGCAATACACCTTAT 57.242 42.857 0.00 0.00 41.47 1.73
5228 5719 4.859784 GGTGCAACGCAATACACC 57.140 55.556 0.00 0.00 45.22 4.16
5229 5720 0.591170 AGTGGTGCAACGCAATACAC 59.409 50.000 19.16 0.00 41.47 2.90
5230 5721 0.871722 GAGTGGTGCAACGCAATACA 59.128 50.000 19.16 0.00 41.47 2.29
5231 5722 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89
5232 5723 2.158300 CGAGTGGTGCAACGCAATA 58.842 52.632 19.16 0.00 41.47 1.90
5233 5724 2.945984 CGAGTGGTGCAACGCAAT 59.054 55.556 19.16 0.00 41.47 3.56
5237 5728 2.249309 CAAGCGAGTGGTGCAACG 59.751 61.111 0.00 0.00 38.12 4.10
5238 5729 1.237285 ATCCAAGCGAGTGGTGCAAC 61.237 55.000 0.00 0.00 39.88 4.17
5239 5730 0.323302 TATCCAAGCGAGTGGTGCAA 59.677 50.000 4.88 0.00 39.88 4.08
5240 5731 0.323302 TTATCCAAGCGAGTGGTGCA 59.677 50.000 4.88 0.00 39.88 4.57
5241 5732 1.668419 ATTATCCAAGCGAGTGGTGC 58.332 50.000 4.88 0.00 39.88 5.01
5242 5733 4.701956 AAAATTATCCAAGCGAGTGGTG 57.298 40.909 4.88 0.00 39.88 4.17
5285 5776 8.616799 AATAGAGGAGCTTTCCCTATATAAGG 57.383 38.462 7.35 0.00 46.09 2.69
5310 5801 7.639113 ACACCTGACTAATTGACTTGAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
5311 5802 8.740123 TTACACCTGACTAATTGACTTGAAAA 57.260 30.769 0.00 0.00 0.00 2.29
5312 5803 8.918202 ATTACACCTGACTAATTGACTTGAAA 57.082 30.769 0.00 0.00 0.00 2.69
5314 5805 9.817809 GATATTACACCTGACTAATTGACTTGA 57.182 33.333 0.00 0.00 0.00 3.02
5315 5806 8.755941 CGATATTACACCTGACTAATTGACTTG 58.244 37.037 0.00 0.00 0.00 3.16
5316 5807 7.438459 GCGATATTACACCTGACTAATTGACTT 59.562 37.037 0.00 0.00 0.00 3.01
5317 5808 6.924060 GCGATATTACACCTGACTAATTGACT 59.076 38.462 0.00 0.00 0.00 3.41
5318 5809 6.145696 GGCGATATTACACCTGACTAATTGAC 59.854 42.308 0.00 0.00 0.00 3.18
5319 5810 6.220930 GGCGATATTACACCTGACTAATTGA 58.779 40.000 0.00 0.00 0.00 2.57
5320 5811 5.408604 GGGCGATATTACACCTGACTAATTG 59.591 44.000 0.00 0.00 0.00 2.32
5321 5812 5.071250 TGGGCGATATTACACCTGACTAATT 59.929 40.000 0.00 0.00 0.00 1.40
5322 5813 4.591498 TGGGCGATATTACACCTGACTAAT 59.409 41.667 0.00 0.00 0.00 1.73
5323 5814 3.962063 TGGGCGATATTACACCTGACTAA 59.038 43.478 0.00 0.00 0.00 2.24
5324 5815 3.568443 TGGGCGATATTACACCTGACTA 58.432 45.455 0.00 0.00 0.00 2.59
5325 5816 2.394632 TGGGCGATATTACACCTGACT 58.605 47.619 0.00 0.00 0.00 3.41
5326 5817 2.902705 TGGGCGATATTACACCTGAC 57.097 50.000 0.00 0.00 0.00 3.51
5327 5818 3.916359 TTTGGGCGATATTACACCTGA 57.084 42.857 0.00 0.00 0.00 3.86
5328 5819 5.514274 AATTTTGGGCGATATTACACCTG 57.486 39.130 0.00 0.00 0.00 4.00
5329 5820 5.420739 ACAAATTTTGGGCGATATTACACCT 59.579 36.000 13.42 0.00 34.12 4.00
5330 5821 5.518487 CACAAATTTTGGGCGATATTACACC 59.482 40.000 13.42 0.00 34.12 4.16
5331 5822 6.326375 TCACAAATTTTGGGCGATATTACAC 58.674 36.000 13.42 0.00 32.92 2.90
5332 5823 6.516739 TCACAAATTTTGGGCGATATTACA 57.483 33.333 13.42 0.00 32.92 2.41
5333 5824 7.820044 TTTCACAAATTTTGGGCGATATTAC 57.180 32.000 13.42 0.00 32.92 1.89
5334 5825 9.442047 AAATTTCACAAATTTTGGGCGATATTA 57.558 25.926 13.42 0.00 46.01 0.98
5335 5826 7.920160 AATTTCACAAATTTTGGGCGATATT 57.080 28.000 13.42 9.85 37.84 1.28
5336 5827 7.920160 AAATTTCACAAATTTTGGGCGATAT 57.080 28.000 13.42 5.27 46.01 1.63
5351 5842 4.187694 GCAAGTGTTGGGAAAATTTCACA 58.812 39.130 6.56 6.56 42.37 3.58
5352 5843 3.245048 CGCAAGTGTTGGGAAAATTTCAC 59.755 43.478 8.09 4.36 45.47 3.18
5353 5844 3.452474 CGCAAGTGTTGGGAAAATTTCA 58.548 40.909 8.09 0.00 45.47 2.69
5367 5858 8.578374 TGGGACAAAAATTAAAGAACGCAAGTG 61.578 37.037 0.00 0.00 46.13 3.16
5369 5860 5.751028 TGGGACAAAAATTAAAGAACGCAAG 59.249 36.000 0.00 0.00 38.98 4.01
5370 5861 5.661458 TGGGACAAAAATTAAAGAACGCAA 58.339 33.333 0.00 0.00 31.92 4.85
5371 5862 5.263968 TGGGACAAAAATTAAAGAACGCA 57.736 34.783 0.00 0.00 31.92 5.24
5387 5878 6.645884 ATAGGGTGTATAGTTTTTGGGACA 57.354 37.500 0.00 0.00 0.00 4.02
5388 5879 9.281371 GAATATAGGGTGTATAGTTTTTGGGAC 57.719 37.037 0.00 0.00 0.00 4.46
5389 5880 9.005318 TGAATATAGGGTGTATAGTTTTTGGGA 57.995 33.333 0.00 0.00 0.00 4.37
5390 5881 9.284968 CTGAATATAGGGTGTATAGTTTTTGGG 57.715 37.037 0.00 0.00 0.00 4.12
5391 5882 9.284968 CCTGAATATAGGGTGTATAGTTTTTGG 57.715 37.037 0.00 0.00 34.06 3.28
5392 5883 9.847224 ACCTGAATATAGGGTGTATAGTTTTTG 57.153 33.333 0.00 0.00 42.35 2.44
5393 5884 9.847224 CACCTGAATATAGGGTGTATAGTTTTT 57.153 33.333 11.32 0.00 43.72 1.94
5404 5895 9.790297 AATATACTCATCACCTGAATATAGGGT 57.210 33.333 0.00 0.00 42.35 4.34
5411 5902 9.770097 CAGTTGTAATATACTCATCACCTGAAT 57.230 33.333 0.00 0.00 32.14 2.57
5485 5976 8.159344 AGTCAAGTATTTTGAAACAGAGGAAG 57.841 34.615 0.00 0.00 0.00 3.46
5486 5977 8.519799 AAGTCAAGTATTTTGAAACAGAGGAA 57.480 30.769 0.00 0.00 0.00 3.36
5487 5978 8.519799 AAAGTCAAGTATTTTGAAACAGAGGA 57.480 30.769 0.00 0.00 0.00 3.71
5488 5979 8.405531 TGAAAGTCAAGTATTTTGAAACAGAGG 58.594 33.333 0.00 0.00 0.00 3.69
5489 5980 9.956720 ATGAAAGTCAAGTATTTTGAAACAGAG 57.043 29.630 0.00 0.00 0.00 3.35
5495 5986 9.528018 GGACAAATGAAAGTCAAGTATTTTGAA 57.472 29.630 7.78 0.00 36.50 2.69
5496 5987 8.690884 TGGACAAATGAAAGTCAAGTATTTTGA 58.309 29.630 7.78 0.00 36.50 2.69
5497 5988 8.870160 TGGACAAATGAAAGTCAAGTATTTTG 57.130 30.769 0.00 0.00 36.50 2.44
5498 5989 9.883142 TTTGGACAAATGAAAGTCAAGTATTTT 57.117 25.926 0.00 0.00 36.50 1.82
5499 5990 9.883142 TTTTGGACAAATGAAAGTCAAGTATTT 57.117 25.926 0.00 0.00 36.50 1.40
5500 5991 9.883142 TTTTTGGACAAATGAAAGTCAAGTATT 57.117 25.926 0.00 0.00 36.50 1.89
5502 5993 9.311916 CATTTTTGGACAAATGAAAGTCAAGTA 57.688 29.630 0.00 0.00 43.99 2.24
5503 5994 8.040132 TCATTTTTGGACAAATGAAAGTCAAGT 58.960 29.630 6.41 0.00 45.85 3.16
5504 5995 8.422973 TCATTTTTGGACAAATGAAAGTCAAG 57.577 30.769 6.41 0.00 45.85 3.02
5512 6003 7.961351 AGGTACATTCATTTTTGGACAAATGA 58.039 30.769 5.01 5.01 46.71 2.57
5513 6004 9.874205 ATAGGTACATTCATTTTTGGACAAATG 57.126 29.630 0.00 0.53 43.04 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.