Multiple sequence alignment - TraesCS2D01G302400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G302400 chr2D 100.000 2801 0 0 1 2801 385567938 385570738 0.000000e+00 5173
1 TraesCS2D01G302400 chr2D 87.668 819 68 15 839 1655 385670697 385671484 0.000000e+00 922
2 TraesCS2D01G302400 chr2D 85.305 803 92 15 1 777 600313017 600313819 0.000000e+00 806
3 TraesCS2D01G302400 chr2D 83.519 807 95 24 3 780 193345755 193344958 0.000000e+00 719
4 TraesCS2D01G302400 chr2B 91.889 1985 113 22 828 2801 456588958 456590905 0.000000e+00 2730
5 TraesCS2D01G302400 chr2B 85.305 803 87 12 1 777 452910228 452911025 0.000000e+00 800
6 TraesCS2D01G302400 chr2B 89.607 433 40 5 1007 1435 456490170 456490601 1.900000e-151 545
7 TraesCS2D01G302400 chr2A 88.745 2159 151 39 663 2793 521506750 521508844 0.000000e+00 2556
8 TraesCS2D01G302400 chr2A 91.465 1031 67 14 1726 2754 730313894 730312883 0.000000e+00 1397
9 TraesCS2D01G302400 chr3A 91.465 1031 67 14 1726 2754 494432682 494433693 0.000000e+00 1397
10 TraesCS2D01G302400 chr3A 91.341 716 43 12 1726 2440 503056133 503056830 0.000000e+00 961
11 TraesCS2D01G302400 chr6A 91.271 1031 69 13 1726 2754 605129667 605128656 0.000000e+00 1386
12 TraesCS2D01G302400 chr7A 89.719 1031 73 14 1726 2754 113567493 113568492 0.000000e+00 1286
13 TraesCS2D01G302400 chr7A 84.472 805 94 8 1 777 540868476 540869277 0.000000e+00 765
14 TraesCS2D01G302400 chr1A 89.816 1031 62 19 1726 2754 280001502 280002491 0.000000e+00 1282
15 TraesCS2D01G302400 chr5A 90.813 849 56 14 1908 2754 465149850 465149022 0.000000e+00 1116
16 TraesCS2D01G302400 chr5A 91.823 746 43 10 1726 2470 102944050 102944778 0.000000e+00 1024
17 TraesCS2D01G302400 chr5A 91.235 251 20 2 2505 2754 102944778 102945027 9.610000e-90 340
18 TraesCS2D01G302400 chr5D 85.949 790 85 14 1 765 464702702 464701914 0.000000e+00 821
19 TraesCS2D01G302400 chr5D 82.555 814 107 22 1 780 553215090 553215902 0.000000e+00 684
20 TraesCS2D01G302400 chr1B 85.625 800 85 15 1 774 94009183 94009978 0.000000e+00 813
21 TraesCS2D01G302400 chr1B 78.209 335 45 11 470 777 192207904 192208237 3.680000e-44 189
22 TraesCS2D01G302400 chr7D 85.536 802 87 14 2 776 1954803 1955602 0.000000e+00 811
23 TraesCS2D01G302400 chr7D 85.203 811 87 16 1 782 611664850 611665656 0.000000e+00 802
24 TraesCS2D01G302400 chr4B 89.308 636 65 3 1 633 665293869 665294504 0.000000e+00 795
25 TraesCS2D01G302400 chr4B 86.154 195 25 2 1625 1818 448885551 448885358 2.830000e-50 209
26 TraesCS2D01G302400 chr7B 85.075 804 89 17 1 777 498599720 498598921 0.000000e+00 791
27 TraesCS2D01G302400 chr7B 81.662 698 101 20 109 780 612084287 612083591 3.150000e-154 555
28 TraesCS2D01G302400 chr5B 89.168 637 64 5 1 633 9668056 9668691 0.000000e+00 789
29 TraesCS2D01G302400 chr5B 81.784 807 110 16 1 780 477070102 477070898 2.350000e-180 641
30 TraesCS2D01G302400 chr5B 81.416 791 117 21 16 777 633936426 633935637 1.100000e-173 619
31 TraesCS2D01G302400 chr3B 88.994 636 66 4 1 633 780864893 780864259 0.000000e+00 784
32 TraesCS2D01G302400 chr6D 84.387 807 96 17 1 780 36260889 36260086 0.000000e+00 765
33 TraesCS2D01G302400 chr4A 86.979 192 23 2 1625 1815 101955238 101955428 6.080000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G302400 chr2D 385567938 385570738 2800 False 5173 5173 100.000 1 2801 1 chr2D.!!$F1 2800
1 TraesCS2D01G302400 chr2D 385670697 385671484 787 False 922 922 87.668 839 1655 1 chr2D.!!$F2 816
2 TraesCS2D01G302400 chr2D 600313017 600313819 802 False 806 806 85.305 1 777 1 chr2D.!!$F3 776
3 TraesCS2D01G302400 chr2D 193344958 193345755 797 True 719 719 83.519 3 780 1 chr2D.!!$R1 777
4 TraesCS2D01G302400 chr2B 456588958 456590905 1947 False 2730 2730 91.889 828 2801 1 chr2B.!!$F3 1973
5 TraesCS2D01G302400 chr2B 452910228 452911025 797 False 800 800 85.305 1 777 1 chr2B.!!$F1 776
6 TraesCS2D01G302400 chr2A 521506750 521508844 2094 False 2556 2556 88.745 663 2793 1 chr2A.!!$F1 2130
7 TraesCS2D01G302400 chr2A 730312883 730313894 1011 True 1397 1397 91.465 1726 2754 1 chr2A.!!$R1 1028
8 TraesCS2D01G302400 chr3A 494432682 494433693 1011 False 1397 1397 91.465 1726 2754 1 chr3A.!!$F1 1028
9 TraesCS2D01G302400 chr3A 503056133 503056830 697 False 961 961 91.341 1726 2440 1 chr3A.!!$F2 714
10 TraesCS2D01G302400 chr6A 605128656 605129667 1011 True 1386 1386 91.271 1726 2754 1 chr6A.!!$R1 1028
11 TraesCS2D01G302400 chr7A 113567493 113568492 999 False 1286 1286 89.719 1726 2754 1 chr7A.!!$F1 1028
12 TraesCS2D01G302400 chr7A 540868476 540869277 801 False 765 765 84.472 1 777 1 chr7A.!!$F2 776
13 TraesCS2D01G302400 chr1A 280001502 280002491 989 False 1282 1282 89.816 1726 2754 1 chr1A.!!$F1 1028
14 TraesCS2D01G302400 chr5A 465149022 465149850 828 True 1116 1116 90.813 1908 2754 1 chr5A.!!$R1 846
15 TraesCS2D01G302400 chr5A 102944050 102945027 977 False 682 1024 91.529 1726 2754 2 chr5A.!!$F1 1028
16 TraesCS2D01G302400 chr5D 464701914 464702702 788 True 821 821 85.949 1 765 1 chr5D.!!$R1 764
17 TraesCS2D01G302400 chr5D 553215090 553215902 812 False 684 684 82.555 1 780 1 chr5D.!!$F1 779
18 TraesCS2D01G302400 chr1B 94009183 94009978 795 False 813 813 85.625 1 774 1 chr1B.!!$F1 773
19 TraesCS2D01G302400 chr7D 1954803 1955602 799 False 811 811 85.536 2 776 1 chr7D.!!$F1 774
20 TraesCS2D01G302400 chr7D 611664850 611665656 806 False 802 802 85.203 1 782 1 chr7D.!!$F2 781
21 TraesCS2D01G302400 chr4B 665293869 665294504 635 False 795 795 89.308 1 633 1 chr4B.!!$F1 632
22 TraesCS2D01G302400 chr7B 498598921 498599720 799 True 791 791 85.075 1 777 1 chr7B.!!$R1 776
23 TraesCS2D01G302400 chr7B 612083591 612084287 696 True 555 555 81.662 109 780 1 chr7B.!!$R2 671
24 TraesCS2D01G302400 chr5B 9668056 9668691 635 False 789 789 89.168 1 633 1 chr5B.!!$F1 632
25 TraesCS2D01G302400 chr5B 477070102 477070898 796 False 641 641 81.784 1 780 1 chr5B.!!$F2 779
26 TraesCS2D01G302400 chr5B 633935637 633936426 789 True 619 619 81.416 16 777 1 chr5B.!!$R1 761
27 TraesCS2D01G302400 chr3B 780864259 780864893 634 True 784 784 88.994 1 633 1 chr3B.!!$R1 632
28 TraesCS2D01G302400 chr6D 36260086 36260889 803 True 765 765 84.387 1 780 1 chr6D.!!$R1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 263 0.766131 AACACCCCGAACACACCATA 59.234 50.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2002 0.179089 CGGCAGGTTCCTCTCATCTG 60.179 60.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 107 1.453745 CTGGCACCACCACAACAGT 60.454 57.895 0.00 0.00 46.36 3.55
236 242 2.742053 CGTTGAACGAATCAGATTGGGT 59.258 45.455 13.13 2.69 46.05 4.51
252 258 1.153127 GGTCAACACCCCGAACACA 60.153 57.895 0.00 0.00 36.54 3.72
257 263 0.766131 AACACCCCGAACACACCATA 59.234 50.000 0.00 0.00 0.00 2.74
276 283 2.310779 AGAACTCTAGTCTGGCACCA 57.689 50.000 0.00 0.00 0.00 4.17
285 292 0.957395 GTCTGGCACCACACCATGAG 60.957 60.000 0.00 0.00 36.36 2.90
408 423 1.840635 GCTCCTGAACTACCTCCCAAT 59.159 52.381 0.00 0.00 0.00 3.16
416 431 2.088674 CTACCTCCCAATCTCCGCGG 62.089 65.000 22.12 22.12 0.00 6.46
520 535 5.751586 TCCTTACTTGAACAGACTGGTTTT 58.248 37.500 7.51 0.00 0.00 2.43
525 540 5.954335 ACTTGAACAGACTGGTTTTCAAAG 58.046 37.500 16.21 13.32 37.48 2.77
526 541 5.710099 ACTTGAACAGACTGGTTTTCAAAGA 59.290 36.000 16.21 1.24 37.48 2.52
559 575 2.680352 ACCGATGGCCTCGTCAGT 60.680 61.111 18.94 10.10 46.18 3.41
561 577 2.202797 CGATGGCCTCGTCAGTGG 60.203 66.667 3.32 0.00 42.56 4.00
590 607 5.827797 TCCAAATAATCTTTATTCAGCGCCT 59.172 36.000 2.29 0.00 0.00 5.52
627 645 2.631160 ACCAAGACGATGAACAACCA 57.369 45.000 0.00 0.00 0.00 3.67
639 683 4.927978 TGAACAACCAAAAACGATCCAT 57.072 36.364 0.00 0.00 0.00 3.41
651 695 3.667497 ACGATCCATACGCATGAATCT 57.333 42.857 0.00 0.00 33.67 2.40
660 705 1.210234 ACGCATGAATCTGATGACCCA 59.790 47.619 0.00 0.00 0.00 4.51
673 718 1.073199 GACCCACCTCACCACCAAG 59.927 63.158 0.00 0.00 0.00 3.61
685 730 1.293498 CACCAAGGACCGAGGTCAG 59.707 63.158 22.17 11.86 46.20 3.51
695 740 2.418910 CGAGGTCAGCGGTGGAGAT 61.419 63.158 15.67 0.00 0.00 2.75
784 831 3.427773 GGACGAGAGCAAAACGATCTACT 60.428 47.826 0.00 0.00 41.56 2.57
789 836 3.118956 AGAGCAAAACGATCTACTCCTGG 60.119 47.826 0.00 0.00 39.05 4.45
806 853 3.117963 TCCTGGGTCGTTTCTGGTTTAAA 60.118 43.478 0.00 0.00 0.00 1.52
807 854 3.633065 CCTGGGTCGTTTCTGGTTTAAAA 59.367 43.478 0.00 0.00 0.00 1.52
976 1032 1.661112 GAAAACCTCGATTCTCCGCAG 59.339 52.381 0.00 0.00 0.00 5.18
990 1046 0.814010 CCGCAGCGCTAGGGTTTATT 60.814 55.000 19.96 0.00 0.00 1.40
1097 1153 2.510238 GAGCACCGATGAGCGCTT 60.510 61.111 13.26 0.00 39.11 4.68
1251 1315 1.000486 CCCTCTCCTCTCCGGTCAA 60.000 63.158 0.00 0.00 0.00 3.18
1437 1501 3.821033 GGAAGTTGCTTGATGGTACTGTT 59.179 43.478 0.00 0.00 0.00 3.16
1441 1506 7.335924 GGAAGTTGCTTGATGGTACTGTTTATA 59.664 37.037 0.00 0.00 0.00 0.98
1498 1564 7.176285 TGTTTTATTCATTGCTTGCAAGTTC 57.824 32.000 26.55 12.30 0.00 3.01
1688 1754 0.031043 TTCGGCTTCGTCAACTTCGA 59.969 50.000 0.00 0.00 35.50 3.71
1689 1755 0.662374 TCGGCTTCGTCAACTTCGAC 60.662 55.000 0.00 0.00 37.05 4.20
1897 1966 1.194772 GTCTCGTGTGGCAGTTTAAGC 59.805 52.381 0.00 0.00 0.00 3.09
1933 2002 4.152938 GTGGTGGTTTAGTTTATGGTCGTC 59.847 45.833 0.00 0.00 0.00 4.20
1949 2019 2.095461 TCGTCAGATGAGAGGAACCTG 58.905 52.381 0.00 0.00 30.27 4.00
2010 2080 3.937814 TGGCTGTTGAACATGTACTAGG 58.062 45.455 0.00 0.00 0.00 3.02
2083 2154 1.268032 GCCGATTTCGCGTGAATGATT 60.268 47.619 12.94 0.00 38.18 2.57
2098 2169 7.141363 CGTGAATGATTTCCATCTTTTATCCC 58.859 38.462 0.00 0.00 33.53 3.85
2104 2175 7.010160 TGATTTCCATCTTTTATCCCCATACC 58.990 38.462 0.00 0.00 0.00 2.73
2143 2214 2.357075 ACTGATGCTCTCAACATGCTG 58.643 47.619 0.00 0.00 32.14 4.41
2145 2216 2.081462 TGATGCTCTCAACATGCTGTG 58.919 47.619 0.00 0.00 0.00 3.66
2146 2217 2.082231 GATGCTCTCAACATGCTGTGT 58.918 47.619 0.00 0.00 44.84 3.72
2147 2218 2.837532 TGCTCTCAACATGCTGTGTA 57.162 45.000 0.00 0.00 41.14 2.90
2148 2219 3.339253 TGCTCTCAACATGCTGTGTAT 57.661 42.857 0.00 0.00 41.14 2.29
2149 2220 3.004862 TGCTCTCAACATGCTGTGTATG 58.995 45.455 0.00 0.00 41.14 2.39
2150 2221 3.264947 GCTCTCAACATGCTGTGTATGA 58.735 45.455 0.00 2.98 41.14 2.15
2151 2222 3.309138 GCTCTCAACATGCTGTGTATGAG 59.691 47.826 17.79 17.79 41.14 2.90
2152 2223 3.865446 TCTCAACATGCTGTGTATGAGG 58.135 45.455 20.42 11.44 41.14 3.86
2153 2224 3.515104 TCTCAACATGCTGTGTATGAGGA 59.485 43.478 20.42 12.57 41.14 3.71
2177 2248 4.015872 TGAGGATGTGGTTTACCTGAAC 57.984 45.455 0.00 0.00 36.82 3.18
2182 2253 3.485463 TGTGGTTTACCTGAACTGAGG 57.515 47.619 0.00 0.00 39.28 3.86
2216 2287 2.261345 CTGGTTTGTGTGTTGTGCTTG 58.739 47.619 0.00 0.00 0.00 4.01
2310 2385 2.338809 TGAAGGGATGAGGTGTTCTGT 58.661 47.619 0.00 0.00 0.00 3.41
2372 2447 3.604875 ATGTACTTGAACGGGTGGTAG 57.395 47.619 0.00 0.00 0.00 3.18
2457 2532 1.981256 TTCTCTGAACCTTTGCACCC 58.019 50.000 0.00 0.00 0.00 4.61
2462 2537 2.912025 AACCTTTGCACCCTGGCG 60.912 61.111 0.00 0.00 36.28 5.69
2513 2588 2.851824 GTGAACCTTTGCAAGTTGAACG 59.148 45.455 7.16 0.00 0.00 3.95
2517 2592 3.018149 ACCTTTGCAAGTTGAACGGTTA 58.982 40.909 7.16 0.00 0.00 2.85
2562 2638 4.336713 ACCTTTGCAAGTCTCTTTTCACTC 59.663 41.667 0.00 0.00 0.00 3.51
2565 2641 2.102420 TGCAAGTCTCTTTTCACTCCGA 59.898 45.455 0.00 0.00 0.00 4.55
2572 2648 1.005394 TTTTCACTCCGAGGCCGTC 60.005 57.895 0.00 0.00 0.00 4.79
2628 2707 3.009723 TCGCCCAAATAAAAGCAGAGAG 58.990 45.455 0.00 0.00 0.00 3.20
2645 2724 5.495640 CAGAGAGAAGATAAAAGCCAAGGT 58.504 41.667 0.00 0.00 0.00 3.50
2712 2791 9.683069 GAAATATACAAACATAATGCTTCCCAG 57.317 33.333 0.00 0.00 0.00 4.45
2719 2798 4.894784 ACATAATGCTTCCCAGGTATACG 58.105 43.478 0.00 0.00 0.00 3.06
2789 2871 5.010012 CAGTGTATTTTCCCAATCCATAGCC 59.990 44.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.406370 TCAGTTTTGTCATGTCGATCCTTAT 58.594 36.000 0.00 0.00 0.00 1.73
85 90 1.453015 GACTGTTGTGGTGGTGCCA 60.453 57.895 0.00 0.00 46.95 4.92
102 107 3.064207 CCGTCATTCTTTTCTTCGGTGA 58.936 45.455 0.00 0.00 33.20 4.02
236 242 1.153127 GGTGTGTTCGGGGTGTTGA 60.153 57.895 0.00 0.00 0.00 3.18
252 258 3.702045 GTGCCAGACTAGAGTTCTATGGT 59.298 47.826 0.00 0.00 0.00 3.55
257 263 1.896465 GTGGTGCCAGACTAGAGTTCT 59.104 52.381 0.00 0.00 0.00 3.01
276 283 0.108804 CGGCGTCTTACTCATGGTGT 60.109 55.000 0.00 0.00 0.00 4.16
285 292 2.260481 CTTTCTCCTTCGGCGTCTTAC 58.740 52.381 6.85 0.00 0.00 2.34
387 402 0.116342 TGGGAGGTAGTTCAGGAGCA 59.884 55.000 0.00 0.00 0.00 4.26
489 504 2.224426 TGTTCAAGTAAGGATGGCGTGT 60.224 45.455 0.00 0.00 0.00 4.49
520 535 3.849574 TCCTATGGTTGGGATGTCTTTGA 59.150 43.478 0.00 0.00 0.00 2.69
525 540 1.202651 CGGTCCTATGGTTGGGATGTC 60.203 57.143 0.00 0.00 34.64 3.06
526 541 0.837272 CGGTCCTATGGTTGGGATGT 59.163 55.000 0.00 0.00 34.64 3.06
559 575 9.578576 CTGAATAAAGATTATTTGGATCCTCCA 57.421 33.333 14.23 0.00 46.61 3.86
561 577 8.233190 CGCTGAATAAAGATTATTTGGATCCTC 58.767 37.037 14.23 0.29 0.00 3.71
590 607 1.961791 TTTCGGCGGCGACAATGAA 60.962 52.632 34.85 21.94 0.00 2.57
627 645 4.955925 TTCATGCGTATGGATCGTTTTT 57.044 36.364 13.77 0.00 34.97 1.94
639 683 2.433970 TGGGTCATCAGATTCATGCGTA 59.566 45.455 0.00 0.00 0.00 4.42
651 695 1.488705 GGTGGTGAGGTGGGTCATCA 61.489 60.000 0.00 0.00 35.10 3.07
660 705 2.516888 CGGTCCTTGGTGGTGAGGT 61.517 63.158 0.00 0.00 37.07 3.85
784 831 0.841289 AAACCAGAAACGACCCAGGA 59.159 50.000 0.00 0.00 0.00 3.86
835 882 0.387622 TGCAACTAGTCCACGCGTAC 60.388 55.000 13.44 7.97 0.00 3.67
976 1032 2.284417 CACTCGAAATAAACCCTAGCGC 59.716 50.000 0.00 0.00 0.00 5.92
990 1046 2.379634 CGCCGACATTGCACTCGAA 61.380 57.895 8.78 0.00 31.24 3.71
1097 1153 2.347490 GGAAGGCGTCCTTGAGCA 59.653 61.111 12.54 0.00 44.82 4.26
1437 1501 6.761099 TTTTTGCGGGTAGAAGCATTATAA 57.239 33.333 0.00 0.00 43.42 0.98
1480 1546 3.648339 ACGAACTTGCAAGCAATGAAT 57.352 38.095 26.27 1.65 35.20 2.57
1498 1564 6.489127 TGTACAATCCATCCAAAACTAACG 57.511 37.500 0.00 0.00 0.00 3.18
1688 1754 1.002142 TGTTCATCGAGTTGTCGTCGT 60.002 47.619 0.00 0.00 46.85 4.34
1689 1755 1.681825 TGTTCATCGAGTTGTCGTCG 58.318 50.000 0.00 0.00 46.85 5.12
1897 1966 1.819288 ACCACCACACGAGACTGATAG 59.181 52.381 0.00 0.00 0.00 2.08
1933 2002 0.179089 CGGCAGGTTCCTCTCATCTG 60.179 60.000 0.00 0.00 0.00 2.90
1949 2019 5.127693 ACACAGATAGATAGACATTCGGC 57.872 43.478 0.00 0.00 0.00 5.54
2010 2080 3.364964 CCACAGCAGTTGGTTAAACGATC 60.365 47.826 0.00 0.00 44.04 3.69
2083 2154 4.202524 CGGGTATGGGGATAAAAGATGGAA 60.203 45.833 0.00 0.00 0.00 3.53
2143 2214 4.818546 CCACATCCTCAATTCCTCATACAC 59.181 45.833 0.00 0.00 0.00 2.90
2145 2216 5.041191 ACCACATCCTCAATTCCTCATAC 57.959 43.478 0.00 0.00 0.00 2.39
2146 2217 5.715439 AACCACATCCTCAATTCCTCATA 57.285 39.130 0.00 0.00 0.00 2.15
2147 2218 4.598036 AACCACATCCTCAATTCCTCAT 57.402 40.909 0.00 0.00 0.00 2.90
2148 2219 4.387026 AAACCACATCCTCAATTCCTCA 57.613 40.909 0.00 0.00 0.00 3.86
2149 2220 4.640647 GGTAAACCACATCCTCAATTCCTC 59.359 45.833 0.00 0.00 35.64 3.71
2150 2221 4.292306 AGGTAAACCACATCCTCAATTCCT 59.708 41.667 1.26 0.00 38.89 3.36
2151 2222 4.399303 CAGGTAAACCACATCCTCAATTCC 59.601 45.833 1.26 0.00 38.89 3.01
2152 2223 5.253330 TCAGGTAAACCACATCCTCAATTC 58.747 41.667 1.26 0.00 38.89 2.17
2153 2224 5.255397 TCAGGTAAACCACATCCTCAATT 57.745 39.130 1.26 0.00 38.89 2.32
2177 2248 6.472686 ACCAGCTAGTAGTATTTTCCTCAG 57.527 41.667 0.00 0.00 0.00 3.35
2182 2253 7.172703 ACACACAAACCAGCTAGTAGTATTTTC 59.827 37.037 0.00 0.00 0.00 2.29
2357 2432 0.036306 AAGGCTACCACCCGTTCAAG 59.964 55.000 0.00 0.00 0.00 3.02
2372 2447 1.615392 ACAAAGCATTCAGTCCAAGGC 59.385 47.619 0.00 0.00 33.15 4.35
2487 2562 4.462483 TCAACTTGCAAAGGTTCACTTCTT 59.538 37.500 0.00 0.00 45.56 2.52
2513 2588 6.264518 TCAGAGAAAACAAAGACCCAATAACC 59.735 38.462 0.00 0.00 0.00 2.85
2517 2592 5.069119 GGTTCAGAGAAAACAAAGACCCAAT 59.931 40.000 0.00 0.00 0.00 3.16
2562 2638 2.756283 AGGAAGAGACGGCCTCGG 60.756 66.667 0.00 0.00 46.49 4.63
2565 2641 2.756283 CGGAGGAAGAGACGGCCT 60.756 66.667 0.00 0.00 33.97 5.19
2572 2648 3.933332 GGAACATGTAAACGGAGGAAGAG 59.067 47.826 0.00 0.00 0.00 2.85
2628 2707 7.448748 TGTTCTTACCTTGGCTTTTATCTTC 57.551 36.000 0.00 0.00 0.00 2.87
2645 2724 8.664992 TGGTATCAGCCCATTATTATGTTCTTA 58.335 33.333 0.00 0.00 0.00 2.10
2675 2754 3.492102 TGTATATTTCCCAGGCAGAGC 57.508 47.619 0.00 0.00 0.00 4.09
2712 2791 3.454371 AGGATGTGCAGTTCGTATACC 57.546 47.619 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.