AutoCloner

Multiple sequence alignment - TraesCS2D01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G302200	chr2D	100.000	4387	0	0	1	4387	385382061	385386447	0.000000e+00	8102
1	TraesCS2D01G302200	chr2D	93.736	878	50	4	1	873	6565635	6564758	0.000000e+00	1312
2	TraesCS2D01G302200	chr2D	88.820	161	16	2	1814	1972	22200817	22200977	3.460000e-46	196
3	TraesCS2D01G302200	chr2A	96.864	2838	76	6	966	3801	520986263	520989089	0.000000e+00	4735
4	TraesCS2D01G302200	chr2A	91.410	617	16	5	3769	4384	520989120	520989700	0.000000e+00	811
5	TraesCS2D01G302200	chr2A	90.196	153	14	1	1817	1968	537476559	537476711	9.620000e-47	198
6	TraesCS2D01G302200	chr2A	87.574	169	16	5	1814	1979	207052317	207052151	1.610000e-44	191
7	TraesCS2D01G302200	chr2A	98.901	91	1	0	902	992	520986162	520986252	3.510000e-36	163
8	TraesCS2D01G302200	chr2B	94.861	1829	66	8	881	2702	456336237	456338044	0.000000e+00	2832
9	TraesCS2D01G302200	chr2B	94.324	828	36	6	2685	3509	456338372	456339191	0.000000e+00	1258
10	TraesCS2D01G302200	chr2B	88.114	387	25	9	3937	4315	456340016	456340389	1.450000e-119	440
11	TraesCS2D01G302200	chr2B	92.115	279	13	4	3526	3801	456339454	456339726	6.880000e-103	385
12	TraesCS2D01G302200	chr7D	95.114	880	34	3	1	873	53324499	53323622	0.000000e+00	1378
13	TraesCS2D01G302200	chr7D	94.552	881	40	3	1	873	27274112	27273232	0.000000e+00	1354
14	TraesCS2D01G302200	chr7D	94.419	878	40	6	1	873	573960839	573961712	0.000000e+00	1341
15	TraesCS2D01G302200	chr7D	94.044	873	42	3	4	873	459875314	459874449	0.000000e+00	1315
16	TraesCS2D01G302200	chr1D	94.325	881	41	6	1	873	492588379	492587500	0.000000e+00	1341
17	TraesCS2D01G302200	chr4D	94.191	878	41	6	1	873	434988310	434987438	0.000000e+00	1330
18	TraesCS2D01G302200	chr3D	93.757	881	47	5	1	873	32371818	32372698	0.000000e+00	1315
19	TraesCS2D01G302200	chr5D	93.585	873	47	4	1	873	494292225	494293088	0.000000e+00	1293
20	TraesCS2D01G302200	chr5D	89.873	158	12	3	1814	1968	258647846	258648002	2.680000e-47	200
21	TraesCS2D01G302200	chr5D	89.937	159	11	4	1814	1967	482454435	482454277	2.680000e-47	200
22	TraesCS2D01G302200	chr3A	89.744	156	14	2	1814	1967	54660378	54660223	9.620000e-47	198
23	TraesCS2D01G302200	chr3B	87.574	169	17	4	1816	1980	11069711	11069879	4.480000e-45	193

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G302200	chr2D	385382061	385386447	4386	False	8102.00	8102	100.0000	1	4387	1	chr2D.!!$F2	4386
1	TraesCS2D01G302200	chr2D	6564758	6565635	877	True	1312.00	1312	93.7360	1	873	1	chr2D.!!$R1	872
2	TraesCS2D01G302200	chr2A	520986162	520989700	3538	False	1903.00	4735	95.7250	902	4384	3	chr2A.!!$F2	3482
3	TraesCS2D01G302200	chr2B	456336237	456340389	4152	False	1228.75	2832	92.3535	881	4315	4	chr2B.!!$F1	3434
4	TraesCS2D01G302200	chr7D	53323622	53324499	877	True	1378.00	1378	95.1140	1	873	1	chr7D.!!$R2	872
5	TraesCS2D01G302200	chr7D	27273232	27274112	880	True	1354.00	1354	94.5520	1	873	1	chr7D.!!$R1	872
6	TraesCS2D01G302200	chr7D	573960839	573961712	873	False	1341.00	1341	94.4190	1	873	1	chr7D.!!$F1	872
7	TraesCS2D01G302200	chr7D	459874449	459875314	865	True	1315.00	1315	94.0440	4	873	1	chr7D.!!$R3	869
8	TraesCS2D01G302200	chr1D	492587500	492588379	879	True	1341.00	1341	94.3250	1	873	1	chr1D.!!$R1	872
9	TraesCS2D01G302200	chr4D	434987438	434988310	872	True	1330.00	1330	94.1910	1	873	1	chr4D.!!$R1	872
10	TraesCS2D01G302200	chr3D	32371818	32372698	880	False	1315.00	1315	93.7570	1	873	1	chr3D.!!$F1	872
11	TraesCS2D01G302200	chr5D	494292225	494293088	863	False	1293.00	1293	93.5850	1	873	1	chr5D.!!$F2	872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
888	915	0.175760	GTGCTGTCGAGATGCCCTTA	59.824	55.000	0.00	0.00	0.00	2.69	F
890	917	0.175760	GCTGTCGAGATGCCCTTACA	59.824	55.000	0.00	0.00	0.00	2.41	F
1300	1367	0.674581	CCTGCTGCGGTTGATCAAGA	60.675	55.000	8.80	0.00	0.00	3.02	F
2679	2763	1.269831	GCCTAATCAGCCAGTACGGAG	60.270	57.143	7.77	0.61	36.56	4.63	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1760	1827	0.605589	GTTCAGGCCAGCCGTAGTTT	60.606	55.000	5.01	0.00	41.95	2.66	R
2801	3223	0.887836	CTGACAAGCAGCAGCCAAGA	60.888	55.000	0.00	0.00	43.56	3.02	R
3088	3510	3.038280	TCTCTGAGAAGGTGTCACCAAA	58.962	45.455	24.02	3.67	41.95	3.28	R
3986	4892	0.394899	ATTTGCAGGCCTAGCAGGAC	60.395	55.000	23.11	3.35	46.64	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
136	137	6.092670	GCATCAGTACTAGAAGCATCAAAACA	59.907	38.462	13.83	0.00	30.65	2.83
140	141	7.171508	TCAGTACTAGAAGCATCAAAACAACTG	59.828	37.037	0.00	0.00	0.00	3.16
206	222	4.981806	ACAGTGAACATAGAGAGAGAGC	57.018	45.455	0.00	0.00	0.00	4.09
405	421	8.742777	CAAATCCTCAAATCAGAAAACCAGATA	58.257	33.333	0.00	0.00	0.00	1.98
451	467	2.327373	CCTAACCCTAACCCTAGCTCC	58.673	57.143	0.00	0.00	0.00	4.70
501	517	0.980231	GGAGGAGGACATCTGCAGGT	60.980	60.000	15.13	2.68	36.17	4.00
610	634	1.384989	GGAGAGACGAGGGCGATGAA	61.385	60.000	0.00	0.00	41.64	2.57
624	648	1.337118	GATGAAGCGAGGAGAGGGAT	58.663	55.000	0.00	0.00	0.00	3.85
784	808	3.424529	GTGGTCAATACGAGCTTATACGC	59.575	47.826	0.00	0.00	42.88	4.42
785	809	2.655474	GGTCAATACGAGCTTATACGCG	59.345	50.000	3.53	3.53	39.15	6.01
863	890	6.125327	AGTGACTAGTGATACTGATTCGTG	57.875	41.667	0.00	0.00	0.00	4.35
880	907	4.628160	GACAACGTGCTGTCGAGA	57.372	55.556	4.71	0.00	36.64	4.04
881	908	3.108521	GACAACGTGCTGTCGAGAT	57.891	52.632	4.71	0.00	36.64	2.75
882	909	0.710567	GACAACGTGCTGTCGAGATG	59.289	55.000	4.71	0.00	36.64	2.90
883	910	1.284982	ACAACGTGCTGTCGAGATGC	61.285	55.000	0.00	0.00	34.70	3.91
884	911	1.738099	AACGTGCTGTCGAGATGCC	60.738	57.895	0.00	0.00	34.70	4.40
885	912	2.887568	CGTGCTGTCGAGATGCCC	60.888	66.667	0.00	0.00	0.00	5.36
886	913	2.581354	GTGCTGTCGAGATGCCCT	59.419	61.111	0.00	0.00	0.00	5.19
887	914	1.078848	GTGCTGTCGAGATGCCCTT	60.079	57.895	0.00	0.00	0.00	3.95
888	915	0.175760	GTGCTGTCGAGATGCCCTTA	59.824	55.000	0.00	0.00	0.00	2.69
889	916	0.175760	TGCTGTCGAGATGCCCTTAC	59.824	55.000	0.00	0.00	0.00	2.34
890	917	0.175760	GCTGTCGAGATGCCCTTACA	59.824	55.000	0.00	0.00	0.00	2.41
996	1061	3.238241	CGCTACGCTTGTCGACCG	61.238	66.667	14.12	12.07	41.67	4.79
1181	1246	2.848751	GCGCATCTGATTTCGAGCTTTC	60.849	50.000	0.30	0.00	0.00	2.62
1300	1367	0.674581	CCTGCTGCGGTTGATCAAGA	60.675	55.000	8.80	0.00	0.00	3.02
1306	1373	1.815421	CGGTTGATCAAGAGCGGGG	60.815	63.158	8.80	0.00	33.53	5.73
1760	1827	3.948473	TGTTCGGGTGAGTTGATTTTCAA	59.052	39.130	0.00	0.00	33.32	2.69
1834	1901	7.195374	AGACCCTAGTTATTGCACATCTAAA	57.805	36.000	0.00	0.00	0.00	1.85
1858	1939	9.985730	AAATGACTCAATCAAGCATAAAAAGAA	57.014	25.926	0.00	0.00	41.93	2.52
1859	1940	9.985730	AATGACTCAATCAAGCATAAAAAGAAA	57.014	25.926	0.00	0.00	41.93	2.52
1860	1941	9.985730	ATGACTCAATCAAGCATAAAAAGAAAA	57.014	25.926	0.00	0.00	41.93	2.29
1861	1942	9.814899	TGACTCAATCAAGCATAAAAAGAAAAA	57.185	25.926	0.00	0.00	33.02	1.94
1895	1976	1.481871	ATACCCACACGAATCTCCGT	58.518	50.000	0.00	0.00	44.43	4.69
1912	1993	9.438291	GAATCTCCGTGTAAAATTAATGACATG	57.562	33.333	9.25	9.25	0.00	3.21
2007	2091	1.826385	CATCGGGGAGAAAAAGCAGT	58.174	50.000	0.00	0.00	0.00	4.40
2016	2100	5.237127	GGGGAGAAAAAGCAGTCAAAAATTG	59.763	40.000	0.00	0.00	0.00	2.32
2027	2111	5.982516	GCAGTCAAAAATTGTAACATGTGGA	59.017	36.000	0.00	0.00	0.00	4.02
2145	2229	4.192317	ACTTTTCTCAACCTGACAGTGTC	58.808	43.478	16.68	16.68	0.00	3.67
2268	2352	5.708230	ACAATTACGCCTGAAACCATTTCTA	59.292	36.000	3.19	0.00	40.32	2.10
2599	2683	7.747888	TGGTTGTCATTTTCACAAGTATATCG	58.252	34.615	0.00	0.00	34.40	2.92
2636	2720	7.294720	TCCAGATTTATCTAGGATTTTAGGGCA	59.705	37.037	6.75	0.00	34.85	5.36
2660	2744	1.930567	GCCATGTGATGTCATTTGGC	58.069	50.000	17.64	17.64	44.01	4.52
2677	2761	3.290776	GCCTAATCAGCCAGTACGG	57.709	57.895	0.00	0.06	38.11	4.02
2679	2763	1.269831	GCCTAATCAGCCAGTACGGAG	60.270	57.143	7.77	0.61	36.56	4.63
2801	3223	8.079203	TCATGTGTTGTTTCTAAATACGCATTT	58.921	29.630	12.85	0.00	35.89	2.32
2918	3340	8.515414	GGCTCTTATTTGACTTGTTAAATGTCT	58.485	33.333	11.95	0.00	0.00	3.41
3088	3510	3.430929	GGAGACGGCTACATTGTCTGAAT	60.431	47.826	0.00	0.00	42.71	2.57
3321	3743	6.822676	GGATGACAAGTCTTTCATCATCTTCT	59.177	38.462	23.98	2.63	46.82	2.85
3330	3752	2.897436	TCATCATCTTCTGCAAGTCGG	58.103	47.619	0.00	0.00	33.76	4.79
3344	3766	3.689649	GCAAGTCGGTTGGTTCATATCTT	59.310	43.478	1.37	0.00	36.56	2.40
3359	3781	0.105593	ATCTTGAGTGCGCATCGGAT	59.894	50.000	15.91	15.36	0.00	4.18
3391	3813	2.200067	CCTTGATGATGAGTGACGCTC	58.800	52.381	9.16	9.16	44.36	5.03
3410	3832	1.273606	TCCTTCTCTTCTTGTCCAGCG	59.726	52.381	0.00	0.00	0.00	5.18
3492	3915	6.040391	TCAGGTTTTCTCCTTTAACCAACATG	59.960	38.462	0.00	0.00	42.96	3.21
3573	4246	2.154567	AGGTACATTGCCTCGGACTA	57.845	50.000	0.00	0.00	0.00	2.59
3692	4367	4.705023	GCCCCAGATTTAAAACTAGCTTCA	59.295	41.667	0.00	0.00	0.00	3.02
3857	4668	2.486727	CCTGCTATGCTGACACATCCAT	60.487	50.000	0.00	0.00	0.00	3.41
3986	4892	9.869757	CCTAAAATTAGTGATAAAAAGTTGGGG	57.130	33.333	0.00	0.00	0.00	4.96
3990	4896	4.741928	AGTGATAAAAAGTTGGGGTCCT	57.258	40.909	0.00	0.00	0.00	3.85
3993	4899	3.181423	TGATAAAAAGTTGGGGTCCTGCT	60.181	43.478	0.00	0.00	0.00	4.24
4089	4995	7.661536	AGCACTAAACTCCTCATATGTCTTA	57.338	36.000	1.90	0.00	0.00	2.10
4114	5020	4.638421	ACATCGACACTCAAAAACTGGAAA	59.362	37.500	0.00	0.00	0.00	3.13
4217	5125	9.311916	CTGTAACATGATCAAAAGAACCAAAAA	57.688	29.630	0.00	0.00	0.00	1.94
4357	5272	0.952497	ATGCGACATCGATGCCATCC	60.952	55.000	25.11	9.78	43.02	3.51
4384	5299	6.197364	TCACAAAATAAAACGGTCACAGTT	57.803	33.333	0.00	0.00	0.00	3.16
4385	5300	6.259638	TCACAAAATAAAACGGTCACAGTTC	58.740	36.000	0.00	0.00	0.00	3.01
4386	5301	6.030849	CACAAAATAAAACGGTCACAGTTCA	58.969	36.000	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	9.754382	GATTATGGTTTTGATGCTTATGTTCAT	57.246	29.630	0.00	0.00	0.00	2.57
136	137	4.207165	AGCACATTGTTTACCACTCAGTT	58.793	39.130	0.00	0.00	0.00	3.16
140	141	4.829064	TGAAGCACATTGTTTACCACTC	57.171	40.909	0.00	0.00	0.00	3.51
206	222	2.543012	CAGCCTGTAAGATTGATGCTCG	59.457	50.000	0.00	0.00	34.07	5.03
405	421	3.505497	TGGGGATTTGGGGATTTGATT	57.495	42.857	0.00	0.00	0.00	2.57
451	467	2.989909	TGCATTATCAGGTCAGTGGTG	58.010	47.619	0.00	0.00	0.00	4.17
491	507	0.036952	ACTTGTCCGACCTGCAGATG	60.037	55.000	17.39	1.02	0.00	2.90
501	517	2.254350	CAGCGACGACTTGTCCGA	59.746	61.111	0.00	0.00	45.23	4.55
610	634	1.145571	ACTCTATCCCTCTCCTCGCT	58.854	55.000	0.00	0.00	0.00	4.93
624	648	3.461773	GGAGCCAGCCGCACTCTA	61.462	66.667	7.69	0.00	41.38	2.43
784	808	0.375454	TTGCAAAACGGTCTGACACG	59.625	50.000	10.38	12.71	0.00	4.49
785	809	1.131504	TGTTGCAAAACGGTCTGACAC	59.868	47.619	10.38	0.00	0.00	3.67
863	890	0.710567	CATCTCGACAGCACGTTGTC	59.289	55.000	9.84	9.84	43.14	3.18
873	900	3.410631	TTTTGTAAGGGCATCTCGACA	57.589	42.857	0.00	0.00	0.00	4.35
874	901	3.426292	GCTTTTTGTAAGGGCATCTCGAC	60.426	47.826	0.00	0.00	0.00	4.20
875	902	2.747446	GCTTTTTGTAAGGGCATCTCGA	59.253	45.455	0.00	0.00	0.00	4.04
876	903	2.159379	GGCTTTTTGTAAGGGCATCTCG	60.159	50.000	0.00	0.00	36.16	4.04
877	904	2.825532	TGGCTTTTTGTAAGGGCATCTC	59.174	45.455	0.00	0.00	40.28	2.75
878	905	2.888212	TGGCTTTTTGTAAGGGCATCT	58.112	42.857	0.00	0.00	40.28	2.90
879	906	3.676291	TTGGCTTTTTGTAAGGGCATC	57.324	42.857	0.00	0.00	43.70	3.91
880	907	4.777366	ACTATTGGCTTTTTGTAAGGGCAT	59.223	37.500	0.00	0.00	43.70	4.40
881	908	4.021544	CACTATTGGCTTTTTGTAAGGGCA	60.022	41.667	0.00	0.00	42.82	5.36
882	909	4.494484	CACTATTGGCTTTTTGTAAGGGC	58.506	43.478	0.00	0.00	36.58	5.19
883	910	5.072040	CCACTATTGGCTTTTTGTAAGGG	57.928	43.478	0.00	0.00	35.56	3.95
1181	1246	0.249398	AACCACCGAATCGAAGAGGG	59.751	55.000	3.36	0.36	43.63	4.30
1300	1367	3.645268	GATCCTTGTTGGCCCCGCT	62.645	63.158	0.00	0.00	35.26	5.52
1306	1373	0.960364	TTCTGGCGATCCTTGTTGGC	60.960	55.000	0.00	0.00	35.26	4.52
1760	1827	0.605589	GTTCAGGCCAGCCGTAGTTT	60.606	55.000	5.01	0.00	41.95	2.66
1834	1901	9.985730	TTTTCTTTTTATGCTTGATTGAGTCAT	57.014	25.926	0.00	0.00	36.54	3.06
1895	1976	9.967451	TCTAAGTCCCATGTCATTAATTTTACA	57.033	29.630	0.00	0.00	0.00	2.41
1912	1993	6.428159	CCATAAGTATTGCACATCTAAGTCCC	59.572	42.308	0.00	0.00	0.00	4.46
1949	2033	8.865590	TTCTTTGTACAATTTTCCTAAAGCAC	57.134	30.769	9.56	0.00	0.00	4.40
2007	2091	9.743057	CTTTAGTCCACATGTTACAATTTTTGA	57.257	29.630	0.00	0.00	0.00	2.69
2016	2100	5.161943	AGTCCCTTTAGTCCACATGTTAC	57.838	43.478	0.00	0.00	0.00	2.50
2027	2111	3.910627	ACAGTCAATGGAGTCCCTTTAGT	59.089	43.478	6.74	0.00	0.00	2.24
2145	2229	3.120408	GCATAGTCTGAATATTGGCTGCG	60.120	47.826	0.00	0.00	0.00	5.18
2213	2297	6.038161	CAGGTATTGTTTCACAGTTCACAAGA	59.962	38.462	0.00	0.00	32.80	3.02
2268	2352	5.494632	ACGAACAAGTTTTCTTTTCGGAT	57.505	34.783	18.61	6.50	44.40	4.18
2599	2683	7.816995	CCTAGATAAATCTGGATAGAAGCACAC	59.183	40.741	5.01	0.00	37.57	3.82
2660	2744	2.032620	ACTCCGTACTGGCTGATTAGG	58.967	52.381	0.00	0.00	37.80	2.69
2677	2761	9.171701	GATAAGAATCACAGTTCATACGTACTC	57.828	37.037	0.00	0.00	31.93	2.59
2679	2763	9.517609	AAGATAAGAATCACAGTTCATACGTAC	57.482	33.333	0.00	0.00	34.28	3.67
2719	3141	7.282224	TCAAAACCAGGTATAATTCATTCCTCG	59.718	37.037	0.00	0.00	32.33	4.63
2801	3223	0.887836	CTGACAAGCAGCAGCCAAGA	60.888	55.000	0.00	0.00	43.56	3.02
2827	3249	4.344679	GGGAACATCATCCAAATAATGCCA	59.655	41.667	0.00	0.00	41.55	4.92
2918	3340	4.021807	TGTGAGAATAGGTCTGCGTAACAA	60.022	41.667	0.00	0.00	36.41	2.83
3088	3510	3.038280	TCTCTGAGAAGGTGTCACCAAA	58.962	45.455	24.02	3.67	41.95	3.28
3321	3743	2.552599	TATGAACCAACCGACTTGCA	57.447	45.000	0.00	0.00	0.00	4.08
3330	3752	3.485877	GCGCACTCAAGATATGAACCAAC	60.486	47.826	0.30	0.00	37.67	3.77
3344	3766	1.519234	GTCATCCGATGCGCACTCA	60.519	57.895	14.90	0.00	0.00	3.41
3359	3781	5.244755	TCATCATCAAGGTCAAAATCGTCA	58.755	37.500	0.00	0.00	0.00	4.35
3391	3813	1.001406	ACGCTGGACAAGAAGAGAAGG	59.999	52.381	0.00	0.00	0.00	3.46
3410	3832	4.383649	TGTGTCGCTTCAAACGATTAGTAC	59.616	41.667	0.00	0.00	42.26	2.73
3462	3885	8.084985	TGGTTAAAGGAGAAAACCTGAAAAAT	57.915	30.769	5.19	0.00	42.60	1.82
3470	3893	6.156748	ACATGTTGGTTAAAGGAGAAAACC	57.843	37.500	0.00	0.00	42.49	3.27
3492	3915	5.599999	TGAGGTCCTTAAGATGCTCTAAC	57.400	43.478	3.36	0.00	0.00	2.34
3827	4638	1.067283	CAGCATAGCAGGGATAGTCCG	60.067	57.143	0.00	0.00	37.43	4.79
3857	4668	6.272324	TCCTGGAAAATTCTCCTGTCTTTCTA	59.728	38.462	0.00	0.00	36.35	2.10
3895	4706	2.871096	TAGGACCGTGGCTTGAATTT	57.129	45.000	0.00	0.00	0.00	1.82
3976	4882	1.075536	CCTAGCAGGACCCCAACTTTT	59.924	52.381	0.00	0.00	37.67	2.27
3986	4892	0.394899	ATTTGCAGGCCTAGCAGGAC	60.395	55.000	23.11	3.35	46.64	3.85
3990	4896	1.892338	GCAATTTGCAGGCCTAGCA	59.108	52.632	21.35	21.35	44.26	3.49
4089	4995	3.809832	CCAGTTTTTGAGTGTCGATGTCT	59.190	43.478	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.