Multiple sequence alignment - TraesCS2D01G302100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G302100 chr2D 100.000 3188 0 0 1 3188 385285275 385288462 0.000000e+00 5888.0
1 TraesCS2D01G302100 chr2D 87.449 247 27 3 1 243 444860809 444861055 6.730000e-72 281.0
2 TraesCS2D01G302100 chr2A 92.171 1073 61 12 1434 2498 520610133 520611190 0.000000e+00 1495.0
3 TraesCS2D01G302100 chr2A 94.167 720 19 10 719 1435 520609352 520610051 0.000000e+00 1075.0
4 TraesCS2D01G302100 chr2A 89.121 239 23 2 7 242 468294286 468294048 8.650000e-76 294.0
5 TraesCS2D01G302100 chr2A 94.624 93 4 1 3096 3188 520611190 520611281 3.310000e-30 143.0
6 TraesCS2D01G302100 chr2A 93.750 64 3 1 669 732 520609274 520609336 9.410000e-16 95.3
7 TraesCS2D01G302100 chr2B 93.827 891 38 9 1582 2469 456303912 456304788 0.000000e+00 1325.0
8 TraesCS2D01G302100 chr2B 92.110 545 23 8 717 1260 456303074 456303599 0.000000e+00 750.0
9 TraesCS2D01G302100 chr2B 86.907 611 61 11 2491 3091 752824471 752825072 0.000000e+00 667.0
10 TraesCS2D01G302100 chr2B 91.489 94 7 1 3096 3188 456304803 456304896 9.280000e-26 128.0
11 TraesCS2D01G302100 chr7D 87.581 620 61 11 2484 3091 120303924 120304539 0.000000e+00 704.0
12 TraesCS2D01G302100 chr7D 88.889 243 24 2 7 246 176959069 176959311 2.400000e-76 296.0
13 TraesCS2D01G302100 chr6D 87.829 608 62 7 2492 3091 382344194 382343591 0.000000e+00 702.0
14 TraesCS2D01G302100 chr6D 87.449 247 27 3 1 243 324114524 324114770 6.730000e-72 281.0
15 TraesCS2D01G302100 chr1D 87.725 611 58 11 2491 3091 469610135 469610738 0.000000e+00 697.0
16 TraesCS2D01G302100 chr1D 84.943 611 76 13 2490 3091 418404814 418405417 3.520000e-169 604.0
17 TraesCS2D01G302100 chrUn 87.479 599 62 8 2503 3094 46070233 46069641 0.000000e+00 678.0
18 TraesCS2D01G302100 chrUn 95.238 42 2 0 430 471 19194230 19194189 2.050000e-07 67.6
19 TraesCS2D01G302100 chrUn 96.875 32 1 0 431 462 26573989 26574020 2.000000e-03 54.7
20 TraesCS2D01G302100 chr1B 86.275 612 71 10 2491 3094 47628536 47627930 0.000000e+00 652.0
21 TraesCS2D01G302100 chr3A 85.386 609 67 13 2491 3091 102494364 102494958 2.100000e-171 612.0
22 TraesCS2D01G302100 chr3A 100.000 28 0 0 432 459 628144740 628144713 6.000000e-03 52.8
23 TraesCS2D01G302100 chr4D 84.577 603 80 10 2491 3085 111131657 111132254 1.270000e-163 586.0
24 TraesCS2D01G302100 chr4D 96.875 32 0 1 429 459 475194103 475194134 6.000000e-03 52.8
25 TraesCS2D01G302100 chr3D 90.000 240 21 2 6 243 280046392 280046630 1.110000e-79 307.0
26 TraesCS2D01G302100 chr3D 89.121 239 23 2 7 242 110402661 110402899 8.650000e-76 294.0
27 TraesCS2D01G302100 chr7B 89.540 239 21 3 7 242 707245595 707245832 1.860000e-77 300.0
28 TraesCS2D01G302100 chr7B 85.780 218 26 5 472 686 685970215 685970000 3.200000e-55 226.0
29 TraesCS2D01G302100 chr7B 97.368 38 1 0 432 469 191891909 191891946 7.380000e-07 65.8
30 TraesCS2D01G302100 chr7A 89.121 239 22 3 7 242 421714 421951 8.650000e-76 294.0
31 TraesCS2D01G302100 chr7A 87.854 247 26 3 1 243 383095989 383096235 1.450000e-73 287.0
32 TraesCS2D01G302100 chr7A 86.473 207 25 3 472 677 243356958 243356754 1.150000e-54 224.0
33 TraesCS2D01G302100 chr5A 90.164 183 18 0 472 654 647359749 647359567 4.110000e-59 239.0
34 TraesCS2D01G302100 chr5A 87.879 198 23 1 472 668 643553396 643553593 6.880000e-57 231.0
35 TraesCS2D01G302100 chr5A 97.297 37 1 0 432 468 491096575 491096611 2.650000e-06 63.9
36 TraesCS2D01G302100 chr4A 88.000 200 23 1 472 671 648137136 648136938 5.320000e-58 235.0
37 TraesCS2D01G302100 chr6B 87.562 201 25 0 472 672 716360793 716360993 1.910000e-57 233.0
38 TraesCS2D01G302100 chr6B 94.872 39 2 0 433 471 716310553 716310591 9.550000e-06 62.1
39 TraesCS2D01G302100 chr5B 87.310 197 25 0 472 668 229081777 229081973 3.200000e-55 226.0
40 TraesCS2D01G302100 chr5B 86.341 205 27 1 472 675 270632337 270632541 4.140000e-54 222.0
41 TraesCS2D01G302100 chr5B 94.872 39 2 0 431 469 711283574 711283536 9.550000e-06 62.1
42 TraesCS2D01G302100 chr1A 86.341 205 26 2 472 676 557499461 557499259 4.140000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G302100 chr2D 385285275 385288462 3187 False 5888.000000 5888 100.000000 1 3188 1 chr2D.!!$F1 3187
1 TraesCS2D01G302100 chr2A 520609274 520611281 2007 False 702.075000 1495 93.678000 669 3188 4 chr2A.!!$F1 2519
2 TraesCS2D01G302100 chr2B 456303074 456304896 1822 False 734.333333 1325 92.475333 717 3188 3 chr2B.!!$F2 2471
3 TraesCS2D01G302100 chr2B 752824471 752825072 601 False 667.000000 667 86.907000 2491 3091 1 chr2B.!!$F1 600
4 TraesCS2D01G302100 chr7D 120303924 120304539 615 False 704.000000 704 87.581000 2484 3091 1 chr7D.!!$F1 607
5 TraesCS2D01G302100 chr6D 382343591 382344194 603 True 702.000000 702 87.829000 2492 3091 1 chr6D.!!$R1 599
6 TraesCS2D01G302100 chr1D 469610135 469610738 603 False 697.000000 697 87.725000 2491 3091 1 chr1D.!!$F2 600
7 TraesCS2D01G302100 chr1D 418404814 418405417 603 False 604.000000 604 84.943000 2490 3091 1 chr1D.!!$F1 601
8 TraesCS2D01G302100 chrUn 46069641 46070233 592 True 678.000000 678 87.479000 2503 3094 1 chrUn.!!$R2 591
9 TraesCS2D01G302100 chr1B 47627930 47628536 606 True 652.000000 652 86.275000 2491 3094 1 chr1B.!!$R1 603
10 TraesCS2D01G302100 chr3A 102494364 102494958 594 False 612.000000 612 85.386000 2491 3091 1 chr3A.!!$F1 600
11 TraesCS2D01G302100 chr4D 111131657 111132254 597 False 586.000000 586 84.577000 2491 3085 1 chr4D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 954 0.035598 TTCGCTCCACCGATCCAAAA 59.964 50.0 0.0 0.0 37.06 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2796 2971 1.204941 CTCGGATCCGGTCTTTGTTCT 59.795 52.381 32.79 0.0 40.25 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.992538 ATGTACTACTACCTCCGCCC 58.007 55.000 0.00 0.00 0.00 6.13
20 21 0.921896 TGTACTACTACCTCCGCCCT 59.078 55.000 0.00 0.00 0.00 5.19
21 22 1.316651 GTACTACTACCTCCGCCCTG 58.683 60.000 0.00 0.00 0.00 4.45
22 23 1.133976 GTACTACTACCTCCGCCCTGA 60.134 57.143 0.00 0.00 0.00 3.86
23 24 0.556747 ACTACTACCTCCGCCCTGAT 59.443 55.000 0.00 0.00 0.00 2.90
24 25 1.063114 ACTACTACCTCCGCCCTGATT 60.063 52.381 0.00 0.00 0.00 2.57
25 26 2.040178 CTACTACCTCCGCCCTGATTT 58.960 52.381 0.00 0.00 0.00 2.17
26 27 2.170012 ACTACCTCCGCCCTGATTTA 57.830 50.000 0.00 0.00 0.00 1.40
27 28 2.690840 ACTACCTCCGCCCTGATTTAT 58.309 47.619 0.00 0.00 0.00 1.40
28 29 3.046374 ACTACCTCCGCCCTGATTTATT 58.954 45.455 0.00 0.00 0.00 1.40
29 30 2.348411 ACCTCCGCCCTGATTTATTG 57.652 50.000 0.00 0.00 0.00 1.90
30 31 1.133792 ACCTCCGCCCTGATTTATTGG 60.134 52.381 0.00 0.00 0.00 3.16
31 32 1.133792 CCTCCGCCCTGATTTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
32 33 2.222027 CTCCGCCCTGATTTATTGGTC 58.778 52.381 0.00 0.00 0.00 4.02
33 34 1.133915 TCCGCCCTGATTTATTGGTCC 60.134 52.381 0.00 0.00 0.00 4.46
34 35 1.409521 CCGCCCTGATTTATTGGTCCA 60.410 52.381 0.00 0.00 0.00 4.02
35 36 1.676006 CGCCCTGATTTATTGGTCCAC 59.324 52.381 0.00 0.00 0.00 4.02
36 37 2.683742 CGCCCTGATTTATTGGTCCACT 60.684 50.000 0.00 0.00 0.00 4.00
37 38 3.365472 GCCCTGATTTATTGGTCCACTT 58.635 45.455 0.00 0.00 0.00 3.16
38 39 3.769300 GCCCTGATTTATTGGTCCACTTT 59.231 43.478 0.00 0.00 0.00 2.66
39 40 4.381932 GCCCTGATTTATTGGTCCACTTTG 60.382 45.833 0.00 0.00 0.00 2.77
40 41 5.016173 CCCTGATTTATTGGTCCACTTTGA 58.984 41.667 0.00 0.00 0.00 2.69
41 42 5.480073 CCCTGATTTATTGGTCCACTTTGAA 59.520 40.000 0.00 0.00 0.00 2.69
42 43 6.014669 CCCTGATTTATTGGTCCACTTTGAAA 60.015 38.462 0.00 0.00 0.00 2.69
43 44 7.310609 CCCTGATTTATTGGTCCACTTTGAAAT 60.311 37.037 0.00 0.00 0.00 2.17
44 45 8.096414 CCTGATTTATTGGTCCACTTTGAAATT 58.904 33.333 0.00 0.00 0.00 1.82
45 46 9.492973 CTGATTTATTGGTCCACTTTGAAATTT 57.507 29.630 0.00 0.00 0.00 1.82
46 47 9.270640 TGATTTATTGGTCCACTTTGAAATTTG 57.729 29.630 0.00 0.00 0.00 2.32
47 48 9.271828 GATTTATTGGTCCACTTTGAAATTTGT 57.728 29.630 0.00 0.00 0.00 2.83
49 50 9.535878 TTTATTGGTCCACTTTGAAATTTGTAC 57.464 29.630 0.00 0.00 0.00 2.90
50 51 5.523438 TGGTCCACTTTGAAATTTGTACC 57.477 39.130 0.00 0.00 0.00 3.34
51 52 4.956700 TGGTCCACTTTGAAATTTGTACCA 59.043 37.500 0.00 1.54 0.00 3.25
52 53 5.422331 TGGTCCACTTTGAAATTTGTACCAA 59.578 36.000 0.00 0.00 30.72 3.67
53 54 6.070767 TGGTCCACTTTGAAATTTGTACCAAA 60.071 34.615 0.00 0.00 30.72 3.28
54 55 6.989759 GGTCCACTTTGAAATTTGTACCAAAT 59.010 34.615 0.00 0.00 0.00 2.32
55 56 7.497579 GGTCCACTTTGAAATTTGTACCAAATT 59.502 33.333 8.68 8.68 0.00 1.82
56 57 8.888716 GTCCACTTTGAAATTTGTACCAAATTT 58.111 29.630 21.31 21.31 41.11 1.82
57 58 9.454859 TCCACTTTGAAATTTGTACCAAATTTT 57.545 25.926 21.80 10.84 39.23 1.82
110 111 9.616634 ATGCATGTTAAAAGAATTATATCGCTG 57.383 29.630 0.00 0.00 0.00 5.18
111 112 8.075574 TGCATGTTAAAAGAATTATATCGCTGG 58.924 33.333 0.00 0.00 0.00 4.85
112 113 8.289618 GCATGTTAAAAGAATTATATCGCTGGA 58.710 33.333 0.00 0.00 0.00 3.86
126 127 5.895636 ATCGCTGGATTTGTATTTGAACA 57.104 34.783 0.00 0.00 0.00 3.18
127 128 5.895636 TCGCTGGATTTGTATTTGAACAT 57.104 34.783 0.00 0.00 0.00 2.71
128 129 6.993786 TCGCTGGATTTGTATTTGAACATA 57.006 33.333 0.00 0.00 0.00 2.29
129 130 7.015226 TCGCTGGATTTGTATTTGAACATAG 57.985 36.000 0.00 0.00 0.00 2.23
130 131 6.597672 TCGCTGGATTTGTATTTGAACATAGT 59.402 34.615 0.00 0.00 0.00 2.12
131 132 7.120579 TCGCTGGATTTGTATTTGAACATAGTT 59.879 33.333 0.00 0.00 0.00 2.24
132 133 7.754924 CGCTGGATTTGTATTTGAACATAGTTT 59.245 33.333 0.00 0.00 0.00 2.66
133 134 9.423061 GCTGGATTTGTATTTGAACATAGTTTT 57.577 29.630 0.00 0.00 0.00 2.43
159 160 8.190122 TCAATGATATAACTTTTGGTGACATGC 58.810 33.333 0.00 0.00 42.32 4.06
160 161 7.643569 ATGATATAACTTTTGGTGACATGCA 57.356 32.000 0.00 0.00 42.32 3.96
161 162 7.643569 TGATATAACTTTTGGTGACATGCAT 57.356 32.000 0.00 0.00 42.32 3.96
162 163 7.482474 TGATATAACTTTTGGTGACATGCATG 58.518 34.615 25.09 25.09 42.32 4.06
163 164 5.981088 ATAACTTTTGGTGACATGCATGA 57.019 34.783 32.75 9.00 42.32 3.07
164 165 4.669206 AACTTTTGGTGACATGCATGAA 57.331 36.364 32.75 17.28 42.32 2.57
165 166 3.981211 ACTTTTGGTGACATGCATGAAC 58.019 40.909 32.75 26.11 42.32 3.18
166 167 3.384146 ACTTTTGGTGACATGCATGAACA 59.616 39.130 32.75 25.57 42.32 3.18
167 168 4.039488 ACTTTTGGTGACATGCATGAACAT 59.961 37.500 32.75 10.70 42.32 2.71
168 169 4.603989 TTTGGTGACATGCATGAACATT 57.396 36.364 32.75 10.28 42.32 2.71
169 170 4.603989 TTGGTGACATGCATGAACATTT 57.396 36.364 32.75 9.47 42.32 2.32
170 171 4.603989 TGGTGACATGCATGAACATTTT 57.396 36.364 32.75 8.66 33.40 1.82
171 172 4.308265 TGGTGACATGCATGAACATTTTG 58.692 39.130 32.75 5.04 33.40 2.44
172 173 4.202233 TGGTGACATGCATGAACATTTTGT 60.202 37.500 32.75 8.74 33.40 2.83
173 174 4.751098 GGTGACATGCATGAACATTTTGTT 59.249 37.500 32.75 6.24 44.37 2.83
174 175 5.925397 GGTGACATGCATGAACATTTTGTTA 59.075 36.000 32.75 2.51 41.28 2.41
175 176 6.089820 GGTGACATGCATGAACATTTTGTTAG 59.910 38.462 32.75 1.29 41.28 2.34
176 177 6.642131 GTGACATGCATGAACATTTTGTTAGT 59.358 34.615 32.75 4.97 41.28 2.24
177 178 7.169645 GTGACATGCATGAACATTTTGTTAGTT 59.830 33.333 32.75 4.26 41.28 2.24
178 179 8.355913 TGACATGCATGAACATTTTGTTAGTTA 58.644 29.630 32.75 0.00 41.28 2.24
179 180 9.190858 GACATGCATGAACATTTTGTTAGTTAA 57.809 29.630 32.75 0.00 41.28 2.01
180 181 9.539825 ACATGCATGAACATTTTGTTAGTTAAA 57.460 25.926 32.75 0.00 41.28 1.52
200 201 9.566432 AGTTAAATTTATGGTCAAAATTTGGCA 57.434 25.926 12.62 0.00 43.10 4.92
201 202 9.605955 GTTAAATTTATGGTCAAAATTTGGCAC 57.394 29.630 12.62 1.03 43.10 5.01
202 203 7.814264 AAATTTATGGTCAAAATTTGGCACA 57.186 28.000 12.62 8.10 42.19 4.57
203 204 7.437793 AATTTATGGTCAAAATTTGGCACAG 57.562 32.000 12.62 0.00 42.39 3.66
204 205 5.798125 TTATGGTCAAAATTTGGCACAGA 57.202 34.783 12.62 2.76 42.39 3.41
205 206 4.686191 ATGGTCAAAATTTGGCACAGAA 57.314 36.364 12.62 0.00 42.39 3.02
206 207 4.686191 TGGTCAAAATTTGGCACAGAAT 57.314 36.364 12.62 0.00 42.39 2.40
207 208 5.798125 TGGTCAAAATTTGGCACAGAATA 57.202 34.783 12.62 0.00 42.39 1.75
208 209 6.357579 TGGTCAAAATTTGGCACAGAATAT 57.642 33.333 12.62 0.00 42.39 1.28
209 210 6.164876 TGGTCAAAATTTGGCACAGAATATG 58.835 36.000 12.62 0.00 42.39 1.78
210 211 6.014755 TGGTCAAAATTTGGCACAGAATATGA 60.015 34.615 12.62 0.00 42.39 2.15
211 212 7.043565 GGTCAAAATTTGGCACAGAATATGAT 58.956 34.615 12.62 0.00 42.39 2.45
212 213 7.010738 GGTCAAAATTTGGCACAGAATATGATG 59.989 37.037 12.62 0.00 42.39 3.07
213 214 7.010738 GTCAAAATTTGGCACAGAATATGATGG 59.989 37.037 5.33 0.00 42.39 3.51
214 215 5.540400 AATTTGGCACAGAATATGATGGG 57.460 39.130 0.00 0.00 42.39 4.00
215 216 2.662535 TGGCACAGAATATGATGGGG 57.337 50.000 0.00 0.00 0.00 4.96
216 217 2.134354 TGGCACAGAATATGATGGGGA 58.866 47.619 0.00 0.00 0.00 4.81
217 218 2.158623 TGGCACAGAATATGATGGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
232 233 2.891191 GGGACCAATAAACCAGGACA 57.109 50.000 0.00 0.00 0.00 4.02
233 234 2.723273 GGGACCAATAAACCAGGACAG 58.277 52.381 0.00 0.00 0.00 3.51
234 235 2.307686 GGGACCAATAAACCAGGACAGA 59.692 50.000 0.00 0.00 0.00 3.41
235 236 3.610911 GGACCAATAAACCAGGACAGAG 58.389 50.000 0.00 0.00 0.00 3.35
236 237 3.610911 GACCAATAAACCAGGACAGAGG 58.389 50.000 0.00 0.00 0.00 3.69
237 238 2.986728 ACCAATAAACCAGGACAGAGGT 59.013 45.455 0.00 0.00 40.61 3.85
238 239 4.172807 ACCAATAAACCAGGACAGAGGTA 58.827 43.478 0.00 0.00 37.07 3.08
239 240 4.225267 ACCAATAAACCAGGACAGAGGTAG 59.775 45.833 0.00 0.00 37.07 3.18
240 241 4.225267 CCAATAAACCAGGACAGAGGTAGT 59.775 45.833 0.00 0.00 37.07 2.73
241 242 5.424252 CCAATAAACCAGGACAGAGGTAGTA 59.576 44.000 0.00 0.00 37.07 1.82
242 243 6.338937 CAATAAACCAGGACAGAGGTAGTAC 58.661 44.000 0.00 0.00 37.07 2.73
243 244 3.829728 AACCAGGACAGAGGTAGTACT 57.170 47.619 0.00 0.00 37.07 2.73
244 245 4.942363 AACCAGGACAGAGGTAGTACTA 57.058 45.455 0.00 0.00 37.07 1.82
245 246 4.233632 ACCAGGACAGAGGTAGTACTAC 57.766 50.000 22.53 22.53 36.07 2.73
246 247 3.851374 ACCAGGACAGAGGTAGTACTACT 59.149 47.826 27.71 16.29 36.07 2.57
247 248 4.080413 ACCAGGACAGAGGTAGTACTACTC 60.080 50.000 27.71 22.09 36.07 2.59
248 249 4.164604 CCAGGACAGAGGTAGTACTACTCT 59.835 50.000 27.71 23.53 36.36 3.24
249 250 5.366186 CCAGGACAGAGGTAGTACTACTCTA 59.634 48.000 27.71 0.00 36.36 2.43
250 251 6.463331 CCAGGACAGAGGTAGTACTACTCTAG 60.463 50.000 27.71 21.35 36.36 2.43
251 252 6.324512 CAGGACAGAGGTAGTACTACTCTAGA 59.675 46.154 27.71 0.00 36.36 2.43
252 253 7.015877 CAGGACAGAGGTAGTACTACTCTAGAT 59.984 44.444 27.71 17.09 36.36 1.98
253 254 8.233820 AGGACAGAGGTAGTACTACTCTAGATA 58.766 40.741 27.71 0.00 36.36 1.98
254 255 8.869109 GGACAGAGGTAGTACTACTCTAGATAA 58.131 40.741 27.71 0.00 36.36 1.75
255 256 9.918630 GACAGAGGTAGTACTACTCTAGATAAG 57.081 40.741 27.71 17.28 36.36 1.73
256 257 8.370182 ACAGAGGTAGTACTACTCTAGATAAGC 58.630 40.741 27.71 10.74 36.36 3.09
257 258 8.369424 CAGAGGTAGTACTACTCTAGATAAGCA 58.631 40.741 27.71 0.00 36.36 3.91
258 259 8.370182 AGAGGTAGTACTACTCTAGATAAGCAC 58.630 40.741 27.71 10.12 36.36 4.40
259 260 8.032045 AGGTAGTACTACTCTAGATAAGCACA 57.968 38.462 27.71 0.00 36.36 4.57
260 261 8.662255 AGGTAGTACTACTCTAGATAAGCACAT 58.338 37.037 27.71 0.00 36.36 3.21
261 262 8.938906 GGTAGTACTACTCTAGATAAGCACATC 58.061 40.741 27.71 5.79 36.36 3.06
262 263 9.715121 GTAGTACTACTCTAGATAAGCACATCT 57.285 37.037 23.17 5.52 35.13 2.90
279 280 8.239038 AGCACATCTAAAATACTAGTCTAGCA 57.761 34.615 6.81 0.00 0.00 3.49
280 281 8.865090 AGCACATCTAAAATACTAGTCTAGCAT 58.135 33.333 6.81 0.00 0.00 3.79
281 282 9.134734 GCACATCTAAAATACTAGTCTAGCATC 57.865 37.037 6.81 0.00 0.00 3.91
297 298 9.130661 AGTCTAGCATCATATACTAGCTTATGG 57.869 37.037 0.00 0.98 36.80 2.74
298 299 8.908903 GTCTAGCATCATATACTAGCTTATGGT 58.091 37.037 0.00 3.49 36.80 3.55
299 300 9.480861 TCTAGCATCATATACTAGCTTATGGTT 57.519 33.333 0.00 0.80 36.80 3.67
302 303 9.480861 AGCATCATATACTAGCTTATGGTTAGA 57.519 33.333 0.00 0.00 33.72 2.10
312 313 9.853177 ACTAGCTTATGGTTAGAATTGCTAAAT 57.147 29.630 0.00 0.00 40.60 1.40
314 315 8.986929 AGCTTATGGTTAGAATTGCTAAATCT 57.013 30.769 0.00 0.00 40.60 2.40
315 316 9.061435 AGCTTATGGTTAGAATTGCTAAATCTC 57.939 33.333 0.00 0.00 40.60 2.75
316 317 8.840321 GCTTATGGTTAGAATTGCTAAATCTCA 58.160 33.333 0.00 0.00 40.60 3.27
321 322 9.241919 TGGTTAGAATTGCTAAATCTCAATTGA 57.758 29.630 8.12 8.12 41.40 2.57
322 323 9.508567 GGTTAGAATTGCTAAATCTCAATTGAC 57.491 33.333 3.38 0.00 41.40 3.18
367 368 8.518430 AGTCGATACTATATTCATGAGATGCT 57.482 34.615 0.00 0.00 32.84 3.79
368 369 9.620259 AGTCGATACTATATTCATGAGATGCTA 57.380 33.333 0.00 0.00 32.84 3.49
369 370 9.658475 GTCGATACTATATTCATGAGATGCTAC 57.342 37.037 0.00 0.00 0.00 3.58
370 371 9.396022 TCGATACTATATTCATGAGATGCTACA 57.604 33.333 0.00 0.00 0.00 2.74
371 372 9.444534 CGATACTATATTCATGAGATGCTACAC 57.555 37.037 0.00 0.00 0.00 2.90
375 376 9.486497 ACTATATTCATGAGATGCTACACAAAG 57.514 33.333 0.00 0.00 0.00 2.77
376 377 9.486497 CTATATTCATGAGATGCTACACAAAGT 57.514 33.333 0.00 0.00 0.00 2.66
377 378 8.743085 ATATTCATGAGATGCTACACAAAGTT 57.257 30.769 0.00 0.00 0.00 2.66
378 379 6.486253 TTCATGAGATGCTACACAAAGTTC 57.514 37.500 0.00 0.00 0.00 3.01
379 380 4.937620 TCATGAGATGCTACACAAAGTTCC 59.062 41.667 0.00 0.00 0.00 3.62
380 381 3.325870 TGAGATGCTACACAAAGTTCCG 58.674 45.455 0.00 0.00 0.00 4.30
381 382 3.244078 TGAGATGCTACACAAAGTTCCGT 60.244 43.478 0.00 0.00 0.00 4.69
382 383 4.021807 TGAGATGCTACACAAAGTTCCGTA 60.022 41.667 0.00 0.00 0.00 4.02
383 384 4.243270 AGATGCTACACAAAGTTCCGTAC 58.757 43.478 0.00 0.00 0.00 3.67
384 385 3.455990 TGCTACACAAAGTTCCGTACA 57.544 42.857 0.00 0.00 0.00 2.90
385 386 3.125316 TGCTACACAAAGTTCCGTACAC 58.875 45.455 0.00 0.00 0.00 2.90
386 387 3.125316 GCTACACAAAGTTCCGTACACA 58.875 45.455 0.00 0.00 0.00 3.72
387 388 3.556775 GCTACACAAAGTTCCGTACACAA 59.443 43.478 0.00 0.00 0.00 3.33
388 389 4.212636 GCTACACAAAGTTCCGTACACAAT 59.787 41.667 0.00 0.00 0.00 2.71
389 390 5.277634 GCTACACAAAGTTCCGTACACAATT 60.278 40.000 0.00 0.00 0.00 2.32
390 391 5.570234 ACACAAAGTTCCGTACACAATTT 57.430 34.783 0.00 0.00 0.00 1.82
391 392 5.956642 ACACAAAGTTCCGTACACAATTTT 58.043 33.333 0.00 0.00 0.00 1.82
392 393 6.031471 ACACAAAGTTCCGTACACAATTTTC 58.969 36.000 0.00 0.00 0.00 2.29
393 394 5.457473 CACAAAGTTCCGTACACAATTTTCC 59.543 40.000 0.00 0.00 0.00 3.13
394 395 5.358725 ACAAAGTTCCGTACACAATTTTCCT 59.641 36.000 0.00 0.00 0.00 3.36
395 396 5.432885 AAGTTCCGTACACAATTTTCCTG 57.567 39.130 0.00 0.00 0.00 3.86
396 397 4.457466 AGTTCCGTACACAATTTTCCTGT 58.543 39.130 0.00 0.00 0.00 4.00
397 398 5.613329 AGTTCCGTACACAATTTTCCTGTA 58.387 37.500 0.00 0.00 0.00 2.74
398 399 6.056884 AGTTCCGTACACAATTTTCCTGTAA 58.943 36.000 0.00 0.00 0.00 2.41
399 400 6.713450 AGTTCCGTACACAATTTTCCTGTAAT 59.287 34.615 0.00 0.00 0.00 1.89
400 401 7.229907 AGTTCCGTACACAATTTTCCTGTAATT 59.770 33.333 0.00 0.00 0.00 1.40
401 402 7.513371 TCCGTACACAATTTTCCTGTAATTT 57.487 32.000 0.00 0.00 0.00 1.82
402 403 7.942990 TCCGTACACAATTTTCCTGTAATTTT 58.057 30.769 0.00 0.00 0.00 1.82
403 404 8.077386 TCCGTACACAATTTTCCTGTAATTTTC 58.923 33.333 0.00 0.00 0.00 2.29
404 405 8.079809 CCGTACACAATTTTCCTGTAATTTTCT 58.920 33.333 0.00 0.00 0.00 2.52
405 406 9.458374 CGTACACAATTTTCCTGTAATTTTCTT 57.542 29.630 0.00 0.00 0.00 2.52
428 429 9.554395 TCTTCTACTTTTTGATATGTTGTGTCA 57.446 29.630 0.00 0.00 0.00 3.58
429 430 9.599322 CTTCTACTTTTTGATATGTTGTGTCAC 57.401 33.333 0.00 0.00 0.00 3.67
430 431 8.902540 TCTACTTTTTGATATGTTGTGTCACT 57.097 30.769 4.27 0.00 0.00 3.41
431 432 8.773645 TCTACTTTTTGATATGTTGTGTCACTG 58.226 33.333 4.27 0.00 0.00 3.66
432 433 6.208644 ACTTTTTGATATGTTGTGTCACTGC 58.791 36.000 4.27 0.00 0.00 4.40
433 434 4.403015 TTTGATATGTTGTGTCACTGCG 57.597 40.909 4.27 0.00 0.00 5.18
434 435 3.311486 TGATATGTTGTGTCACTGCGA 57.689 42.857 4.27 0.00 0.00 5.10
435 436 3.658709 TGATATGTTGTGTCACTGCGAA 58.341 40.909 4.27 0.00 0.00 4.70
436 437 3.431912 TGATATGTTGTGTCACTGCGAAC 59.568 43.478 4.27 0.95 0.00 3.95
437 438 0.944386 ATGTTGTGTCACTGCGAACC 59.056 50.000 4.27 0.00 0.00 3.62
438 439 0.391793 TGTTGTGTCACTGCGAACCA 60.392 50.000 4.27 0.00 0.00 3.67
439 440 0.730265 GTTGTGTCACTGCGAACCAA 59.270 50.000 4.27 0.00 0.00 3.67
440 441 1.333619 GTTGTGTCACTGCGAACCAAT 59.666 47.619 4.27 0.00 0.00 3.16
441 442 1.225855 TGTGTCACTGCGAACCAATC 58.774 50.000 4.27 0.00 0.00 2.67
442 443 1.202639 TGTGTCACTGCGAACCAATCT 60.203 47.619 4.27 0.00 0.00 2.40
443 444 1.195448 GTGTCACTGCGAACCAATCTG 59.805 52.381 0.00 0.00 0.00 2.90
444 445 1.202639 TGTCACTGCGAACCAATCTGT 60.203 47.619 0.00 0.00 0.00 3.41
445 446 1.195448 GTCACTGCGAACCAATCTGTG 59.805 52.381 0.00 0.00 0.00 3.66
461 462 5.878406 ATCTGTGGTTGGATAGTTAGAGG 57.122 43.478 0.00 0.00 0.00 3.69
462 463 4.942944 TCTGTGGTTGGATAGTTAGAGGA 58.057 43.478 0.00 0.00 0.00 3.71
463 464 5.338632 TCTGTGGTTGGATAGTTAGAGGAA 58.661 41.667 0.00 0.00 0.00 3.36
464 465 5.187186 TCTGTGGTTGGATAGTTAGAGGAAC 59.813 44.000 0.00 0.00 38.44 3.62
465 466 4.841813 TGTGGTTGGATAGTTAGAGGAACA 59.158 41.667 0.00 0.00 40.86 3.18
466 467 5.046591 TGTGGTTGGATAGTTAGAGGAACAG 60.047 44.000 0.00 0.00 40.86 3.16
467 468 5.046520 GTGGTTGGATAGTTAGAGGAACAGT 60.047 44.000 0.00 0.00 40.86 3.55
468 469 5.046591 TGGTTGGATAGTTAGAGGAACAGTG 60.047 44.000 0.00 0.00 40.86 3.66
469 470 5.187186 GGTTGGATAGTTAGAGGAACAGTGA 59.813 44.000 0.00 0.00 40.86 3.41
470 471 6.127026 GGTTGGATAGTTAGAGGAACAGTGAT 60.127 42.308 0.00 0.00 40.86 3.06
471 472 6.471233 TGGATAGTTAGAGGAACAGTGATG 57.529 41.667 0.00 0.00 40.86 3.07
472 473 5.363868 TGGATAGTTAGAGGAACAGTGATGG 59.636 44.000 0.00 0.00 40.86 3.51
473 474 3.618690 AGTTAGAGGAACAGTGATGGC 57.381 47.619 0.00 0.00 40.86 4.40
474 475 2.093973 AGTTAGAGGAACAGTGATGGCG 60.094 50.000 0.00 0.00 40.86 5.69
475 476 1.847328 TAGAGGAACAGTGATGGCGA 58.153 50.000 0.00 0.00 0.00 5.54
476 477 1.198713 AGAGGAACAGTGATGGCGAT 58.801 50.000 0.00 0.00 0.00 4.58
477 478 1.134580 AGAGGAACAGTGATGGCGATG 60.135 52.381 0.00 0.00 0.00 3.84
478 479 0.745845 AGGAACAGTGATGGCGATGC 60.746 55.000 0.00 0.00 0.00 3.91
479 480 1.349627 GAACAGTGATGGCGATGCG 59.650 57.895 0.00 0.00 0.00 4.73
480 481 1.361668 GAACAGTGATGGCGATGCGT 61.362 55.000 0.00 0.00 0.00 5.24
481 482 0.955428 AACAGTGATGGCGATGCGTT 60.955 50.000 0.00 0.00 0.00 4.84
482 483 0.955428 ACAGTGATGGCGATGCGTTT 60.955 50.000 0.00 0.00 0.00 3.60
483 484 0.168788 CAGTGATGGCGATGCGTTTT 59.831 50.000 0.00 0.00 0.00 2.43
484 485 0.447801 AGTGATGGCGATGCGTTTTC 59.552 50.000 0.00 0.00 0.00 2.29
485 486 0.167908 GTGATGGCGATGCGTTTTCA 59.832 50.000 0.00 0.00 0.00 2.69
486 487 0.447406 TGATGGCGATGCGTTTTCAG 59.553 50.000 0.00 0.00 0.00 3.02
487 488 0.447801 GATGGCGATGCGTTTTCAGT 59.552 50.000 0.00 0.00 0.00 3.41
488 489 0.168788 ATGGCGATGCGTTTTCAGTG 59.831 50.000 0.00 0.00 0.00 3.66
489 490 1.154225 GGCGATGCGTTTTCAGTGG 60.154 57.895 0.00 0.00 0.00 4.00
490 491 1.573829 GGCGATGCGTTTTCAGTGGA 61.574 55.000 0.00 0.00 0.00 4.02
491 492 0.237235 GCGATGCGTTTTCAGTGGAA 59.763 50.000 0.00 0.00 0.00 3.53
492 493 1.725931 GCGATGCGTTTTCAGTGGAAG 60.726 52.381 0.00 0.00 33.82 3.46
493 494 1.135972 CGATGCGTTTTCAGTGGAAGG 60.136 52.381 0.00 0.00 33.82 3.46
494 495 2.151202 GATGCGTTTTCAGTGGAAGGA 58.849 47.619 0.00 0.00 33.82 3.36
495 496 1.593196 TGCGTTTTCAGTGGAAGGAG 58.407 50.000 0.00 0.00 33.82 3.69
496 497 1.140052 TGCGTTTTCAGTGGAAGGAGA 59.860 47.619 0.00 0.00 33.82 3.71
497 498 1.531578 GCGTTTTCAGTGGAAGGAGAC 59.468 52.381 0.00 0.00 33.82 3.36
498 499 1.792949 CGTTTTCAGTGGAAGGAGACG 59.207 52.381 0.00 0.00 33.82 4.18
499 500 2.802057 CGTTTTCAGTGGAAGGAGACGT 60.802 50.000 0.00 0.00 33.82 4.34
500 501 3.203716 GTTTTCAGTGGAAGGAGACGTT 58.796 45.455 0.00 0.00 33.82 3.99
501 502 2.814280 TTCAGTGGAAGGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
522 523 2.515290 TCGATGACGAGGCGCCTA 60.515 61.111 32.97 15.35 43.81 3.93
523 524 1.897137 TCGATGACGAGGCGCCTAT 60.897 57.895 32.97 21.88 43.81 2.57
524 525 1.730902 CGATGACGAGGCGCCTATG 60.731 63.158 32.97 27.02 42.66 2.23
525 526 1.373497 GATGACGAGGCGCCTATGG 60.373 63.158 32.97 23.67 0.00 2.74
526 527 2.088674 GATGACGAGGCGCCTATGGT 62.089 60.000 32.97 26.91 0.00 3.55
527 528 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
528 529 2.758327 ACGAGGCGCCTATGGTGA 60.758 61.111 32.97 0.00 34.74 4.02
529 530 2.279517 CGAGGCGCCTATGGTGAC 60.280 66.667 32.97 14.51 42.50 3.67
532 533 4.126524 GGCGCCTATGGTGACTTC 57.873 61.111 22.15 0.00 38.38 3.01
533 534 1.220749 GGCGCCTATGGTGACTTCA 59.779 57.895 22.15 0.00 38.38 3.02
534 535 0.179045 GGCGCCTATGGTGACTTCAT 60.179 55.000 22.15 0.00 38.38 2.57
535 536 1.070134 GGCGCCTATGGTGACTTCATA 59.930 52.381 22.15 0.00 38.38 2.15
536 537 2.484770 GGCGCCTATGGTGACTTCATAA 60.485 50.000 22.15 0.00 38.38 1.90
537 538 3.202906 GCGCCTATGGTGACTTCATAAA 58.797 45.455 0.00 0.00 34.74 1.40
538 539 3.815401 GCGCCTATGGTGACTTCATAAAT 59.185 43.478 0.00 0.00 34.74 1.40
539 540 4.083802 GCGCCTATGGTGACTTCATAAATC 60.084 45.833 0.00 0.00 34.74 2.17
540 541 5.300752 CGCCTATGGTGACTTCATAAATCT 58.699 41.667 0.00 0.00 34.74 2.40
541 542 5.406780 CGCCTATGGTGACTTCATAAATCTC 59.593 44.000 0.00 0.00 34.74 2.75
542 543 6.291377 GCCTATGGTGACTTCATAAATCTCA 58.709 40.000 0.00 0.00 0.00 3.27
543 544 6.767902 GCCTATGGTGACTTCATAAATCTCAA 59.232 38.462 0.00 0.00 0.00 3.02
544 545 7.041508 GCCTATGGTGACTTCATAAATCTCAAG 60.042 40.741 0.00 0.00 0.00 3.02
545 546 8.206867 CCTATGGTGACTTCATAAATCTCAAGA 58.793 37.037 0.00 0.00 0.00 3.02
546 547 9.775854 CTATGGTGACTTCATAAATCTCAAGAT 57.224 33.333 0.00 0.00 36.07 2.40
547 548 7.854557 TGGTGACTTCATAAATCTCAAGATG 57.145 36.000 0.00 0.00 34.49 2.90
548 549 7.623630 TGGTGACTTCATAAATCTCAAGATGA 58.376 34.615 0.00 0.00 34.49 2.92
549 550 8.270030 TGGTGACTTCATAAATCTCAAGATGAT 58.730 33.333 0.00 0.00 34.49 2.45
550 551 9.770097 GGTGACTTCATAAATCTCAAGATGATA 57.230 33.333 0.00 0.00 34.49 2.15
560 561 7.767250 AATCTCAAGATGATATACGGTCTCA 57.233 36.000 0.00 0.00 34.49 3.27
561 562 6.809630 TCTCAAGATGATATACGGTCTCAG 57.190 41.667 0.00 0.00 0.00 3.35
562 563 6.299922 TCTCAAGATGATATACGGTCTCAGT 58.700 40.000 0.00 0.00 0.00 3.41
563 564 6.428465 TCTCAAGATGATATACGGTCTCAGTC 59.572 42.308 0.00 0.00 0.00 3.51
564 565 6.299922 TCAAGATGATATACGGTCTCAGTCT 58.700 40.000 0.00 0.00 0.00 3.24
565 566 6.428465 TCAAGATGATATACGGTCTCAGTCTC 59.572 42.308 0.00 0.00 0.00 3.36
566 567 6.121776 AGATGATATACGGTCTCAGTCTCT 57.878 41.667 0.00 0.00 0.00 3.10
567 568 6.170506 AGATGATATACGGTCTCAGTCTCTC 58.829 44.000 0.00 0.00 0.00 3.20
568 569 4.308265 TGATATACGGTCTCAGTCTCTCG 58.692 47.826 0.00 0.00 0.00 4.04
569 570 2.983907 ATACGGTCTCAGTCTCTCGA 57.016 50.000 0.00 0.00 0.00 4.04
570 571 2.756840 TACGGTCTCAGTCTCTCGAA 57.243 50.000 0.00 0.00 0.00 3.71
571 572 1.444836 ACGGTCTCAGTCTCTCGAAG 58.555 55.000 0.00 0.00 0.00 3.79
572 573 0.730265 CGGTCTCAGTCTCTCGAAGG 59.270 60.000 0.00 0.00 0.00 3.46
573 574 1.828979 GGTCTCAGTCTCTCGAAGGT 58.171 55.000 0.00 0.00 0.00 3.50
574 575 2.677325 CGGTCTCAGTCTCTCGAAGGTA 60.677 54.545 0.00 0.00 0.00 3.08
575 576 2.679336 GGTCTCAGTCTCTCGAAGGTAC 59.321 54.545 0.00 0.00 0.00 3.34
577 578 3.619929 GTCTCAGTCTCTCGAAGGTACTC 59.380 52.174 0.00 0.00 38.49 2.59
578 579 3.261137 TCTCAGTCTCTCGAAGGTACTCA 59.739 47.826 0.00 0.00 38.49 3.41
579 580 4.080807 TCTCAGTCTCTCGAAGGTACTCAT 60.081 45.833 0.00 0.00 38.49 2.90
580 581 5.128991 TCTCAGTCTCTCGAAGGTACTCATA 59.871 44.000 0.00 0.00 38.49 2.15
581 582 5.361427 TCAGTCTCTCGAAGGTACTCATAG 58.639 45.833 0.00 0.00 38.49 2.23
582 583 5.128991 TCAGTCTCTCGAAGGTACTCATAGA 59.871 44.000 0.00 0.00 38.49 1.98
583 584 5.465390 CAGTCTCTCGAAGGTACTCATAGAG 59.535 48.000 0.00 0.00 38.49 2.43
584 585 5.364446 AGTCTCTCGAAGGTACTCATAGAGA 59.636 44.000 0.31 8.80 38.49 3.10
585 586 6.042781 AGTCTCTCGAAGGTACTCATAGAGAT 59.957 42.308 13.12 5.15 38.49 2.75
586 587 7.233962 AGTCTCTCGAAGGTACTCATAGAGATA 59.766 40.741 13.12 4.74 38.49 1.98
587 588 7.544566 GTCTCTCGAAGGTACTCATAGAGATAG 59.455 44.444 13.12 4.48 38.49 2.08
588 589 6.703319 TCTCGAAGGTACTCATAGAGATAGG 58.297 44.000 0.31 0.00 38.49 2.57
589 590 5.806818 TCGAAGGTACTCATAGAGATAGGG 58.193 45.833 0.31 0.00 38.49 3.53
590 591 5.310068 TCGAAGGTACTCATAGAGATAGGGT 59.690 44.000 0.31 0.00 38.49 4.34
591 592 5.413213 CGAAGGTACTCATAGAGATAGGGTG 59.587 48.000 0.31 0.00 38.49 4.61
592 593 5.933846 AGGTACTCATAGAGATAGGGTGT 57.066 43.478 0.31 0.00 33.32 4.16
593 594 5.636123 AGGTACTCATAGAGATAGGGTGTG 58.364 45.833 0.31 0.00 33.32 3.82
594 595 4.218852 GGTACTCATAGAGATAGGGTGTGC 59.781 50.000 0.31 0.00 33.32 4.57
595 596 2.887783 ACTCATAGAGATAGGGTGTGCG 59.112 50.000 0.31 0.00 33.32 5.34
596 597 2.887783 CTCATAGAGATAGGGTGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
597 598 2.623416 TCATAGAGATAGGGTGTGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
598 599 2.139323 TAGAGATAGGGTGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
599 600 2.139323 AGAGATAGGGTGTGCGTGTA 57.861 50.000 0.00 0.00 0.00 2.90
600 601 2.667470 AGAGATAGGGTGTGCGTGTAT 58.333 47.619 0.00 0.00 0.00 2.29
601 602 2.362397 AGAGATAGGGTGTGCGTGTATG 59.638 50.000 0.00 0.00 0.00 2.39
602 603 1.202533 AGATAGGGTGTGCGTGTATGC 60.203 52.381 0.00 0.00 0.00 3.14
603 604 0.529773 ATAGGGTGTGCGTGTATGCG 60.530 55.000 0.00 0.00 37.81 4.73
604 605 1.879737 TAGGGTGTGCGTGTATGCGT 61.880 55.000 0.00 0.00 37.81 5.24
605 606 2.322081 GGGTGTGCGTGTATGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
606 607 1.572447 GGTGTGCGTGTATGCGTTT 59.428 52.632 0.00 0.00 37.81 3.60
607 608 0.791422 GGTGTGCGTGTATGCGTTTA 59.209 50.000 0.00 0.00 37.81 2.01
608 609 1.395608 GGTGTGCGTGTATGCGTTTAT 59.604 47.619 0.00 0.00 37.81 1.40
609 610 2.604011 GGTGTGCGTGTATGCGTTTATA 59.396 45.455 0.00 0.00 37.81 0.98
610 611 3.062369 GGTGTGCGTGTATGCGTTTATAA 59.938 43.478 0.00 0.00 37.81 0.98
611 612 4.260670 GTGTGCGTGTATGCGTTTATAAG 58.739 43.478 0.00 0.00 37.81 1.73
612 613 3.307512 TGTGCGTGTATGCGTTTATAAGG 59.692 43.478 0.00 0.00 37.81 2.69
613 614 3.552699 GTGCGTGTATGCGTTTATAAGGA 59.447 43.478 0.00 0.00 37.81 3.36
614 615 4.210537 GTGCGTGTATGCGTTTATAAGGAT 59.789 41.667 0.00 0.00 37.81 3.24
615 616 4.210328 TGCGTGTATGCGTTTATAAGGATG 59.790 41.667 0.00 0.00 37.81 3.51
616 617 4.446385 GCGTGTATGCGTTTATAAGGATGA 59.554 41.667 0.00 0.00 0.00 2.92
617 618 5.388475 GCGTGTATGCGTTTATAAGGATGAG 60.388 44.000 0.00 0.00 0.00 2.90
618 619 5.690409 CGTGTATGCGTTTATAAGGATGAGT 59.310 40.000 0.00 0.00 0.00 3.41
619 620 6.345803 CGTGTATGCGTTTATAAGGATGAGTG 60.346 42.308 0.00 0.00 0.00 3.51
620 621 6.479001 GTGTATGCGTTTATAAGGATGAGTGT 59.521 38.462 0.00 0.00 0.00 3.55
621 622 7.650504 GTGTATGCGTTTATAAGGATGAGTGTA 59.349 37.037 0.00 0.00 0.00 2.90
622 623 8.364894 TGTATGCGTTTATAAGGATGAGTGTAT 58.635 33.333 0.00 0.00 0.00 2.29
623 624 7.658179 ATGCGTTTATAAGGATGAGTGTATG 57.342 36.000 0.00 0.00 0.00 2.39
624 625 5.465390 TGCGTTTATAAGGATGAGTGTATGC 59.535 40.000 0.00 0.00 0.00 3.14
625 626 5.696724 GCGTTTATAAGGATGAGTGTATGCT 59.303 40.000 0.00 0.00 0.00 3.79
626 627 6.128795 GCGTTTATAAGGATGAGTGTATGCTC 60.129 42.308 0.00 0.00 36.12 4.26
627 628 6.088217 CGTTTATAAGGATGAGTGTATGCTCG 59.912 42.308 0.00 0.00 38.28 5.03
628 629 6.650427 TTATAAGGATGAGTGTATGCTCGT 57.350 37.500 0.00 0.00 38.28 4.18
629 630 7.754851 TTATAAGGATGAGTGTATGCTCGTA 57.245 36.000 0.00 0.00 38.28 3.43
630 631 6.842437 ATAAGGATGAGTGTATGCTCGTAT 57.158 37.500 0.00 0.00 38.28 3.06
631 632 4.511617 AGGATGAGTGTATGCTCGTATG 57.488 45.455 0.00 0.00 38.28 2.39
632 633 3.891977 AGGATGAGTGTATGCTCGTATGT 59.108 43.478 0.00 0.00 38.28 2.29
633 634 5.070685 AGGATGAGTGTATGCTCGTATGTA 58.929 41.667 0.00 0.00 38.28 2.29
634 635 5.712446 AGGATGAGTGTATGCTCGTATGTAT 59.288 40.000 0.00 0.00 38.28 2.29
635 636 6.884836 AGGATGAGTGTATGCTCGTATGTATA 59.115 38.462 0.00 0.00 38.28 1.47
636 637 7.393515 AGGATGAGTGTATGCTCGTATGTATAA 59.606 37.037 0.00 0.00 38.28 0.98
637 638 7.698550 GGATGAGTGTATGCTCGTATGTATAAG 59.301 40.741 0.00 0.00 38.28 1.73
638 639 6.379386 TGAGTGTATGCTCGTATGTATAAGC 58.621 40.000 0.00 0.00 38.28 3.09
644 645 5.342806 TGCTCGTATGTATAAGCATTTGC 57.657 39.130 0.00 0.00 39.69 3.68
662 663 8.093063 GCATTTGCGTCTGTACTAATTTTAAG 57.907 34.615 0.00 0.00 0.00 1.85
663 664 7.960738 GCATTTGCGTCTGTACTAATTTTAAGA 59.039 33.333 0.00 0.00 0.00 2.10
664 665 9.820229 CATTTGCGTCTGTACTAATTTTAAGAA 57.180 29.630 0.00 0.00 0.00 2.52
752 782 2.030562 CGGGCGTGTCCAGAAGTT 59.969 61.111 0.00 0.00 36.21 2.66
874 904 3.666253 CGCCACGTTGAAACCCCC 61.666 66.667 0.00 0.00 0.00 5.40
876 906 1.830847 GCCACGTTGAAACCCCCTT 60.831 57.895 0.00 0.00 0.00 3.95
877 907 1.396607 GCCACGTTGAAACCCCCTTT 61.397 55.000 0.00 0.00 0.00 3.11
878 908 0.671796 CCACGTTGAAACCCCCTTTC 59.328 55.000 0.00 0.00 39.11 2.62
923 953 0.391130 CTTCGCTCCACCGATCCAAA 60.391 55.000 0.00 0.00 37.06 3.28
924 954 0.035598 TTCGCTCCACCGATCCAAAA 59.964 50.000 0.00 0.00 37.06 2.44
925 955 0.251916 TCGCTCCACCGATCCAAAAT 59.748 50.000 0.00 0.00 31.36 1.82
926 956 0.657840 CGCTCCACCGATCCAAAATC 59.342 55.000 0.00 0.00 0.00 2.17
927 957 1.025041 GCTCCACCGATCCAAAATCC 58.975 55.000 0.00 0.00 0.00 3.01
928 958 1.681780 GCTCCACCGATCCAAAATCCA 60.682 52.381 0.00 0.00 0.00 3.41
929 959 2.722094 CTCCACCGATCCAAAATCCAA 58.278 47.619 0.00 0.00 0.00 3.53
930 960 3.088532 CTCCACCGATCCAAAATCCAAA 58.911 45.455 0.00 0.00 0.00 3.28
931 961 2.823154 TCCACCGATCCAAAATCCAAAC 59.177 45.455 0.00 0.00 0.00 2.93
932 962 2.094234 CCACCGATCCAAAATCCAAACC 60.094 50.000 0.00 0.00 0.00 3.27
933 963 2.094234 CACCGATCCAAAATCCAAACCC 60.094 50.000 0.00 0.00 0.00 4.11
936 966 2.825532 CGATCCAAAATCCAAACCCACT 59.174 45.455 0.00 0.00 0.00 4.00
941 971 3.005791 CCAAAATCCAAACCCACTCACTC 59.994 47.826 0.00 0.00 0.00 3.51
1025 1055 2.914777 AAGAAGGATCTGCTCGGCGC 62.915 60.000 0.00 0.00 35.59 6.53
1308 1338 3.354948 TCAGATAAATGCCACTGTGCT 57.645 42.857 1.29 0.00 0.00 4.40
1367 1397 0.029834 GCGCATAATTCCACTGCTGG 59.970 55.000 0.30 0.00 39.23 4.85
1389 1419 3.550842 GCCTGGTGAAATTTCAGTGTGTC 60.551 47.826 21.05 8.25 37.98 3.67
1446 1561 0.100861 GGACACTAGGTAGCAGCGTC 59.899 60.000 0.00 0.00 0.00 5.19
1464 1579 3.421231 GCGTCGTGTTGTATCTATACAGC 59.579 47.826 9.31 9.31 43.44 4.40
1465 1580 3.658079 CGTCGTGTTGTATCTATACAGCG 59.342 47.826 10.96 12.10 44.32 5.18
1483 1601 0.250038 CGCATGCTGGTGCCTAGTAT 60.250 55.000 17.13 0.00 42.06 2.12
1494 1612 3.069158 GGTGCCTAGTATGTGTAATCCGT 59.931 47.826 0.00 0.00 0.00 4.69
1496 1614 3.955551 TGCCTAGTATGTGTAATCCGTGA 59.044 43.478 0.00 0.00 0.00 4.35
1517 1635 4.222810 TGAGGAGGACGAATCTTTTGATGA 59.777 41.667 0.00 0.00 39.48 2.92
1522 1640 5.174395 AGGACGAATCTTTTGATGAGAGTG 58.826 41.667 0.00 0.00 39.48 3.51
1526 1644 7.168972 GGACGAATCTTTTGATGAGAGTGATAG 59.831 40.741 0.00 0.00 39.48 2.08
1527 1645 6.983307 ACGAATCTTTTGATGAGAGTGATAGG 59.017 38.462 0.00 0.00 39.48 2.57
1546 1666 9.654663 GTGATAGGTTTTACAGTTCAGTTCTAT 57.345 33.333 0.00 0.00 0.00 1.98
1574 1694 0.380378 TTGACCAAAACAGCAGACGC 59.620 50.000 0.00 0.00 38.99 5.19
1593 1713 7.030165 CAGACGCTAGAGATAAAAACTGAGAA 58.970 38.462 0.00 0.00 0.00 2.87
1804 1966 3.045601 ACAGAGATGGTTGAAGGAACG 57.954 47.619 0.00 0.00 35.12 3.95
1812 1974 4.100707 TGGTTGAAGGAACGTATAGTCG 57.899 45.455 0.00 0.00 35.12 4.18
1837 2000 9.061610 CGTACAAAGCAAATTAATCAAGTTAGG 57.938 33.333 0.00 0.00 0.00 2.69
1841 2004 9.696917 CAAAGCAAATTAATCAAGTTAGGAGTT 57.303 29.630 0.00 0.00 0.00 3.01
1842 2005 9.696917 AAAGCAAATTAATCAAGTTAGGAGTTG 57.303 29.630 0.00 0.00 37.51 3.16
1843 2006 8.409358 AGCAAATTAATCAAGTTAGGAGTTGT 57.591 30.769 0.00 0.00 37.45 3.32
1844 2007 8.860088 AGCAAATTAATCAAGTTAGGAGTTGTT 58.140 29.630 0.00 0.00 37.45 2.83
1875 2038 2.546899 TCCAGATTTCCTTCTTCCCGA 58.453 47.619 0.00 0.00 0.00 5.14
1930 2093 4.110036 TGTGTATCACGATTCTGTGGAG 57.890 45.455 0.00 0.00 40.31 3.86
1990 2154 3.056179 TCCATTGAGTCGAACATGTAGCA 60.056 43.478 0.00 0.00 0.00 3.49
1992 2156 5.049828 CCATTGAGTCGAACATGTAGCATA 58.950 41.667 0.00 0.00 0.00 3.14
2007 2171 7.979537 ACATGTAGCATACTTTTCGATTGTCTA 59.020 33.333 0.00 0.00 43.54 2.59
2054 2218 4.082245 CCAAACTACTTATTGGTTGGCTGG 60.082 45.833 0.00 0.00 40.96 4.85
2107 2271 7.982252 AGATGTTCACCTCATGATATATGGTT 58.018 34.615 0.00 0.00 37.11 3.67
2132 2296 1.085893 GCTTCTGCAGAGAAAGGAGC 58.914 55.000 17.43 17.45 37.77 4.70
2404 2570 0.320683 TCACTGATGCAACCGGACTG 60.321 55.000 9.46 6.14 0.00 3.51
2456 2622 3.004734 TGCTACTTTGCTGCCTTTTCTTC 59.995 43.478 0.00 0.00 0.00 2.87
2462 2628 0.179153 GCTGCCTTTTCTTCGGATGC 60.179 55.000 0.00 0.00 0.00 3.91
2477 2643 4.776349 TCGGATGCAGCTTAATTCCTTTA 58.224 39.130 0.22 0.00 0.00 1.85
2487 2653 9.723447 GCAGCTTAATTCCTTTAATTTCTACTC 57.277 33.333 0.00 0.00 38.71 2.59
2527 2693 8.777865 AAACTGTCGATCTATTCATCTTCAAA 57.222 30.769 0.00 0.00 0.00 2.69
2596 2765 1.880675 CATAGACCACCTAGCGACGAT 59.119 52.381 0.00 0.00 0.00 3.73
2694 2868 1.538950 GTAGACAGTCGGGAAGTCGTT 59.461 52.381 0.00 0.00 37.36 3.85
2739 2914 0.038526 CTCAGAACAGTAACCGCCGT 60.039 55.000 0.00 0.00 0.00 5.68
2747 2922 0.244450 AGTAACCGCCGTCGATGAAA 59.756 50.000 6.11 0.00 38.10 2.69
2796 2971 7.719193 TCAACCTGAAGATACATGAACAAAGAA 59.281 33.333 0.00 0.00 0.00 2.52
2831 3006 1.089920 CCGAGCTGATTCACCAAAGG 58.910 55.000 0.00 0.00 0.00 3.11
2840 3015 0.324738 TTCACCAAAGGCAACCACCA 60.325 50.000 0.00 0.00 37.17 4.17
2879 3055 3.562639 TCGGAGACACTTTCACACG 57.437 52.632 0.00 0.00 0.00 4.49
2881 3057 1.129326 CGGAGACACTTTCACACGTC 58.871 55.000 0.00 0.00 0.00 4.34
2882 3058 1.129326 GGAGACACTTTCACACGTCG 58.871 55.000 0.00 0.00 33.56 5.12
2883 3059 1.268896 GGAGACACTTTCACACGTCGA 60.269 52.381 0.00 0.00 33.56 4.20
2884 3060 2.456989 GAGACACTTTCACACGTCGAA 58.543 47.619 0.00 0.00 33.56 3.71
2885 3061 2.855963 GAGACACTTTCACACGTCGAAA 59.144 45.455 0.00 8.86 33.56 3.46
2894 3076 2.228103 TCACACGTCGAAACTGCTAGAT 59.772 45.455 0.00 0.00 0.00 1.98
2927 3109 1.590339 GGGGGCTAGGTGGGGAAAAT 61.590 60.000 0.00 0.00 0.00 1.82
2944 3126 7.845800 TGGGGAAAATCTTATTCCATCTTCAAT 59.154 33.333 7.53 0.00 46.69 2.57
2953 3135 1.211703 TCCATCTTCAATAAGCCGCCA 59.788 47.619 0.00 0.00 32.36 5.69
2986 3172 3.330701 TCTTGAGCAGGACATAAACCCTT 59.669 43.478 0.00 0.00 0.00 3.95
3085 3272 2.435120 TAGGGCCACAGGAGACGTGA 62.435 60.000 6.18 0.00 37.13 4.35
3091 3278 1.821753 CCACAGGAGACGTGAGAGATT 59.178 52.381 0.00 0.00 37.13 2.40
3094 3281 1.135915 CAGGAGACGTGAGAGATTGGG 59.864 57.143 0.00 0.00 0.00 4.12
3153 3340 6.037940 GCATTCTCGACCGTAGTATATATCCA 59.962 42.308 0.00 0.00 0.00 3.41
3171 3359 4.345859 TCCATCGAACTAAAGTTGGTGT 57.654 40.909 0.00 0.00 38.56 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.498145 AGGGCGGAGGTAGTAGTACAT 59.502 52.381 9.89 2.02 0.00 2.29
2 3 1.133976 TCAGGGCGGAGGTAGTAGTAC 60.134 57.143 0.00 0.00 0.00 2.73
4 5 0.556747 ATCAGGGCGGAGGTAGTAGT 59.443 55.000 0.00 0.00 0.00 2.73
5 6 1.705873 AATCAGGGCGGAGGTAGTAG 58.294 55.000 0.00 0.00 0.00 2.57
6 7 2.170012 AAATCAGGGCGGAGGTAGTA 57.830 50.000 0.00 0.00 0.00 1.82
7 8 2.170012 TAAATCAGGGCGGAGGTAGT 57.830 50.000 0.00 0.00 0.00 2.73
8 9 3.403038 CAATAAATCAGGGCGGAGGTAG 58.597 50.000 0.00 0.00 0.00 3.18
9 10 2.105821 CCAATAAATCAGGGCGGAGGTA 59.894 50.000 0.00 0.00 0.00 3.08
11 12 1.133792 ACCAATAAATCAGGGCGGAGG 60.134 52.381 0.00 0.00 0.00 4.30
12 13 2.222027 GACCAATAAATCAGGGCGGAG 58.778 52.381 0.00 0.00 0.00 4.63
13 14 1.133915 GGACCAATAAATCAGGGCGGA 60.134 52.381 0.00 0.00 0.00 5.54
14 15 1.318576 GGACCAATAAATCAGGGCGG 58.681 55.000 0.00 0.00 0.00 6.13
15 16 1.676006 GTGGACCAATAAATCAGGGCG 59.324 52.381 0.00 0.00 0.00 6.13
16 17 3.018423 AGTGGACCAATAAATCAGGGC 57.982 47.619 0.00 0.00 0.00 5.19
17 18 5.016173 TCAAAGTGGACCAATAAATCAGGG 58.984 41.667 0.00 0.00 0.00 4.45
18 19 6.588719 TTCAAAGTGGACCAATAAATCAGG 57.411 37.500 0.00 0.00 0.00 3.86
19 20 9.492973 AAATTTCAAAGTGGACCAATAAATCAG 57.507 29.630 0.00 0.00 0.00 2.90
20 21 9.270640 CAAATTTCAAAGTGGACCAATAAATCA 57.729 29.630 0.00 0.00 0.00 2.57
21 22 9.271828 ACAAATTTCAAAGTGGACCAATAAATC 57.728 29.630 0.00 0.00 0.00 2.17
23 24 9.535878 GTACAAATTTCAAAGTGGACCAATAAA 57.464 29.630 0.00 0.00 0.00 1.40
24 25 8.145122 GGTACAAATTTCAAAGTGGACCAATAA 58.855 33.333 11.63 0.00 43.46 1.40
25 26 7.662897 GGTACAAATTTCAAAGTGGACCAATA 58.337 34.615 11.63 0.00 43.46 1.90
26 27 6.521162 GGTACAAATTTCAAAGTGGACCAAT 58.479 36.000 11.63 0.00 43.46 3.16
27 28 5.908341 GGTACAAATTTCAAAGTGGACCAA 58.092 37.500 11.63 0.00 43.46 3.67
28 29 5.523438 GGTACAAATTTCAAAGTGGACCA 57.477 39.130 11.63 0.00 43.46 4.02
29 30 5.523438 TGGTACAAATTTCAAAGTGGACC 57.477 39.130 10.09 10.09 44.14 4.46
84 85 9.616634 CAGCGATATAATTCTTTTAACATGCAT 57.383 29.630 0.00 0.00 0.00 3.96
85 86 8.075574 CCAGCGATATAATTCTTTTAACATGCA 58.924 33.333 0.00 0.00 0.00 3.96
86 87 8.289618 TCCAGCGATATAATTCTTTTAACATGC 58.710 33.333 0.00 0.00 0.00 4.06
100 101 9.114952 TGTTCAAATACAAATCCAGCGATATAA 57.885 29.630 0.00 0.00 0.00 0.98
101 102 8.669946 TGTTCAAATACAAATCCAGCGATATA 57.330 30.769 0.00 0.00 0.00 0.86
102 103 7.566760 TGTTCAAATACAAATCCAGCGATAT 57.433 32.000 0.00 0.00 0.00 1.63
103 104 6.993786 TGTTCAAATACAAATCCAGCGATA 57.006 33.333 0.00 0.00 0.00 2.92
104 105 5.895636 TGTTCAAATACAAATCCAGCGAT 57.104 34.783 0.00 0.00 0.00 4.58
105 106 5.895636 ATGTTCAAATACAAATCCAGCGA 57.104 34.783 0.00 0.00 0.00 4.93
106 107 6.785191 ACTATGTTCAAATACAAATCCAGCG 58.215 36.000 0.00 0.00 0.00 5.18
107 108 8.986477 AAACTATGTTCAAATACAAATCCAGC 57.014 30.769 0.00 0.00 0.00 4.85
133 134 8.190122 GCATGTCACCAAAAGTTATATCATTGA 58.810 33.333 0.00 0.00 0.00 2.57
134 135 7.975058 TGCATGTCACCAAAAGTTATATCATTG 59.025 33.333 0.00 0.00 0.00 2.82
135 136 8.065473 TGCATGTCACCAAAAGTTATATCATT 57.935 30.769 0.00 0.00 0.00 2.57
136 137 7.643569 TGCATGTCACCAAAAGTTATATCAT 57.356 32.000 0.00 0.00 0.00 2.45
137 138 7.338957 TCATGCATGTCACCAAAAGTTATATCA 59.661 33.333 25.43 0.00 0.00 2.15
138 139 7.706159 TCATGCATGTCACCAAAAGTTATATC 58.294 34.615 25.43 0.00 0.00 1.63
139 140 7.643569 TCATGCATGTCACCAAAAGTTATAT 57.356 32.000 25.43 0.00 0.00 0.86
140 141 7.040132 TGTTCATGCATGTCACCAAAAGTTATA 60.040 33.333 25.43 0.00 0.00 0.98
141 142 5.981088 TCATGCATGTCACCAAAAGTTAT 57.019 34.783 25.43 0.00 0.00 1.89
142 143 5.068329 TGTTCATGCATGTCACCAAAAGTTA 59.932 36.000 25.43 0.00 0.00 2.24
143 144 4.141981 TGTTCATGCATGTCACCAAAAGTT 60.142 37.500 25.43 0.00 0.00 2.66
144 145 3.384146 TGTTCATGCATGTCACCAAAAGT 59.616 39.130 25.43 0.00 0.00 2.66
145 146 3.979948 TGTTCATGCATGTCACCAAAAG 58.020 40.909 25.43 0.00 0.00 2.27
146 147 4.603989 ATGTTCATGCATGTCACCAAAA 57.396 36.364 25.43 8.38 0.00 2.44
147 148 4.603989 AATGTTCATGCATGTCACCAAA 57.396 36.364 25.43 9.24 0.00 3.28
148 149 4.603989 AAATGTTCATGCATGTCACCAA 57.396 36.364 25.43 9.97 0.00 3.67
149 150 4.202233 ACAAAATGTTCATGCATGTCACCA 60.202 37.500 25.43 17.03 0.00 4.17
150 151 4.309099 ACAAAATGTTCATGCATGTCACC 58.691 39.130 25.43 12.41 0.00 4.02
151 152 5.910637 AACAAAATGTTCATGCATGTCAC 57.089 34.783 25.43 21.75 35.27 3.67
152 153 6.747125 ACTAACAAAATGTTCATGCATGTCA 58.253 32.000 25.43 23.31 40.22 3.58
153 154 7.642071 AACTAACAAAATGTTCATGCATGTC 57.358 32.000 25.43 19.05 40.22 3.06
154 155 9.539825 TTTAACTAACAAAATGTTCATGCATGT 57.460 25.926 25.43 4.01 40.22 3.21
174 175 9.566432 TGCCAAATTTTGACCATAAATTTAACT 57.434 25.926 10.72 0.00 41.03 2.24
175 176 9.605955 GTGCCAAATTTTGACCATAAATTTAAC 57.394 29.630 10.72 0.00 41.03 2.01
176 177 9.342308 TGTGCCAAATTTTGACCATAAATTTAA 57.658 25.926 10.72 0.00 41.03 1.52
177 178 8.908786 TGTGCCAAATTTTGACCATAAATTTA 57.091 26.923 10.72 0.00 41.03 1.40
178 179 7.718753 TCTGTGCCAAATTTTGACCATAAATTT 59.281 29.630 10.72 0.00 42.72 1.82
179 180 7.222872 TCTGTGCCAAATTTTGACCATAAATT 58.777 30.769 10.72 0.00 36.91 1.82
180 181 6.767456 TCTGTGCCAAATTTTGACCATAAAT 58.233 32.000 10.72 0.00 0.00 1.40
181 182 6.166984 TCTGTGCCAAATTTTGACCATAAA 57.833 33.333 10.72 0.00 0.00 1.40
182 183 5.798125 TCTGTGCCAAATTTTGACCATAA 57.202 34.783 10.72 1.09 0.00 1.90
183 184 5.798125 TTCTGTGCCAAATTTTGACCATA 57.202 34.783 10.72 5.21 0.00 2.74
184 185 4.686191 TTCTGTGCCAAATTTTGACCAT 57.314 36.364 10.72 0.00 0.00 3.55
185 186 4.686191 ATTCTGTGCCAAATTTTGACCA 57.314 36.364 10.72 4.80 0.00 4.02
186 187 6.397272 TCATATTCTGTGCCAAATTTTGACC 58.603 36.000 10.72 2.35 0.00 4.02
187 188 7.010738 CCATCATATTCTGTGCCAAATTTTGAC 59.989 37.037 10.72 0.00 0.00 3.18
188 189 7.042950 CCATCATATTCTGTGCCAAATTTTGA 58.957 34.615 10.72 0.00 0.00 2.69
189 190 6.259167 CCCATCATATTCTGTGCCAAATTTTG 59.741 38.462 1.99 1.99 0.00 2.44
190 191 6.350906 CCCATCATATTCTGTGCCAAATTTT 58.649 36.000 0.00 0.00 0.00 1.82
191 192 5.163280 CCCCATCATATTCTGTGCCAAATTT 60.163 40.000 0.00 0.00 0.00 1.82
192 193 4.345837 CCCCATCATATTCTGTGCCAAATT 59.654 41.667 0.00 0.00 0.00 1.82
193 194 3.899360 CCCCATCATATTCTGTGCCAAAT 59.101 43.478 0.00 0.00 0.00 2.32
194 195 3.053019 TCCCCATCATATTCTGTGCCAAA 60.053 43.478 0.00 0.00 0.00 3.28
195 196 2.513317 TCCCCATCATATTCTGTGCCAA 59.487 45.455 0.00 0.00 0.00 4.52
196 197 2.134354 TCCCCATCATATTCTGTGCCA 58.866 47.619 0.00 0.00 0.00 4.92
197 198 2.508526 GTCCCCATCATATTCTGTGCC 58.491 52.381 0.00 0.00 0.00 5.01
198 199 2.158623 TGGTCCCCATCATATTCTGTGC 60.159 50.000 0.00 0.00 0.00 4.57
199 200 3.862877 TGGTCCCCATCATATTCTGTG 57.137 47.619 0.00 0.00 0.00 3.66
200 201 6.529084 TTATTGGTCCCCATCATATTCTGT 57.471 37.500 0.00 0.00 31.53 3.41
201 202 6.209391 GGTTTATTGGTCCCCATCATATTCTG 59.791 42.308 0.00 0.00 31.53 3.02
202 203 6.125919 TGGTTTATTGGTCCCCATCATATTCT 60.126 38.462 0.00 0.00 31.53 2.40
203 204 6.074648 TGGTTTATTGGTCCCCATCATATTC 58.925 40.000 0.00 0.00 31.53 1.75
204 205 6.036926 TGGTTTATTGGTCCCCATCATATT 57.963 37.500 0.00 0.00 31.53 1.28
205 206 5.459536 CCTGGTTTATTGGTCCCCATCATAT 60.460 44.000 0.00 0.00 31.53 1.78
206 207 4.141041 CCTGGTTTATTGGTCCCCATCATA 60.141 45.833 0.00 0.00 31.53 2.15
207 208 3.374098 CCTGGTTTATTGGTCCCCATCAT 60.374 47.826 0.00 0.00 31.53 2.45
208 209 2.024464 CCTGGTTTATTGGTCCCCATCA 60.024 50.000 0.00 0.00 31.53 3.07
209 210 2.243736 TCCTGGTTTATTGGTCCCCATC 59.756 50.000 0.00 0.00 31.53 3.51
210 211 2.024369 GTCCTGGTTTATTGGTCCCCAT 60.024 50.000 0.00 0.00 31.53 4.00
211 212 1.356398 GTCCTGGTTTATTGGTCCCCA 59.644 52.381 0.00 0.00 0.00 4.96
212 213 1.356398 TGTCCTGGTTTATTGGTCCCC 59.644 52.381 0.00 0.00 0.00 4.81
213 214 2.307686 TCTGTCCTGGTTTATTGGTCCC 59.692 50.000 0.00 0.00 0.00 4.46
214 215 3.610911 CTCTGTCCTGGTTTATTGGTCC 58.389 50.000 0.00 0.00 0.00 4.46
215 216 3.009143 ACCTCTGTCCTGGTTTATTGGTC 59.991 47.826 0.00 0.00 31.62 4.02
216 217 2.986728 ACCTCTGTCCTGGTTTATTGGT 59.013 45.455 0.00 0.00 31.62 3.67
217 218 3.721087 ACCTCTGTCCTGGTTTATTGG 57.279 47.619 0.00 0.00 31.62 3.16
218 219 5.422214 ACTACCTCTGTCCTGGTTTATTG 57.578 43.478 0.00 0.00 37.74 1.90
219 220 6.262207 AGTACTACCTCTGTCCTGGTTTATT 58.738 40.000 0.00 0.00 37.74 1.40
220 221 5.840081 AGTACTACCTCTGTCCTGGTTTAT 58.160 41.667 0.00 0.00 37.74 1.40
221 222 5.266709 AGTACTACCTCTGTCCTGGTTTA 57.733 43.478 0.00 0.00 37.74 2.01
222 223 4.129317 AGTACTACCTCTGTCCTGGTTT 57.871 45.455 0.00 0.00 37.74 3.27
223 224 3.829728 AGTACTACCTCTGTCCTGGTT 57.170 47.619 0.00 0.00 37.74 3.67
224 225 3.851374 AGTAGTACTACCTCTGTCCTGGT 59.149 47.826 25.97 3.63 40.12 4.00
225 226 4.164604 AGAGTAGTACTACCTCTGTCCTGG 59.835 50.000 25.97 0.00 36.75 4.45
226 227 5.362105 AGAGTAGTACTACCTCTGTCCTG 57.638 47.826 25.97 0.00 36.75 3.86
227 228 6.442961 TCTAGAGTAGTACTACCTCTGTCCT 58.557 44.000 27.59 17.72 36.75 3.85
228 229 6.729690 TCTAGAGTAGTACTACCTCTGTCC 57.270 45.833 27.59 13.64 36.75 4.02
229 230 9.918630 CTTATCTAGAGTAGTACTACCTCTGTC 57.081 40.741 27.59 20.15 36.75 3.51
230 231 8.370182 GCTTATCTAGAGTAGTACTACCTCTGT 58.630 40.741 27.59 20.34 36.75 3.41
231 232 8.369424 TGCTTATCTAGAGTAGTACTACCTCTG 58.631 40.741 27.59 21.23 36.75 3.35
232 233 8.370182 GTGCTTATCTAGAGTAGTACTACCTCT 58.630 40.741 25.97 25.48 36.75 3.69
233 234 8.149647 TGTGCTTATCTAGAGTAGTACTACCTC 58.850 40.741 25.97 21.21 36.75 3.85
234 235 8.032045 TGTGCTTATCTAGAGTAGTACTACCT 57.968 38.462 25.97 22.92 36.75 3.08
235 236 8.851541 ATGTGCTTATCTAGAGTAGTACTACC 57.148 38.462 25.97 18.10 36.75 3.18
236 237 9.715121 AGATGTGCTTATCTAGAGTAGTACTAC 57.285 37.037 23.03 23.03 35.70 2.73
253 254 8.696374 TGCTAGACTAGTATTTTAGATGTGCTT 58.304 33.333 11.15 0.00 0.00 3.91
254 255 8.239038 TGCTAGACTAGTATTTTAGATGTGCT 57.761 34.615 11.15 0.00 0.00 4.40
255 256 9.134734 GATGCTAGACTAGTATTTTAGATGTGC 57.865 37.037 13.53 0.00 31.00 4.57
271 272 9.130661 CCATAAGCTAGTATATGATGCTAGACT 57.869 37.037 13.73 8.44 45.07 3.24
272 273 8.908903 ACCATAAGCTAGTATATGATGCTAGAC 58.091 37.037 13.73 6.77 45.07 2.59
273 274 9.480861 AACCATAAGCTAGTATATGATGCTAGA 57.519 33.333 13.73 0.00 45.07 2.43
276 277 9.480861 TCTAACCATAAGCTAGTATATGATGCT 57.519 33.333 14.73 0.00 32.43 3.79
286 287 9.853177 ATTTAGCAATTCTAACCATAAGCTAGT 57.147 29.630 0.00 0.00 37.02 2.57
289 290 8.986929 AGATTTAGCAATTCTAACCATAAGCT 57.013 30.769 0.00 0.00 37.02 3.74
290 291 8.840321 TGAGATTTAGCAATTCTAACCATAAGC 58.160 33.333 0.00 0.00 37.02 3.09
295 296 9.241919 TCAATTGAGATTTAGCAATTCTAACCA 57.758 29.630 3.38 0.00 41.37 3.67
296 297 9.508567 GTCAATTGAGATTTAGCAATTCTAACC 57.491 33.333 8.80 0.00 41.37 2.85
341 342 9.620259 AGCATCTCATGAATATAGTATCGACTA 57.380 33.333 0.00 0.00 42.41 2.59
342 343 8.518430 AGCATCTCATGAATATAGTATCGACT 57.482 34.615 0.00 0.00 39.92 4.18
343 344 9.658475 GTAGCATCTCATGAATATAGTATCGAC 57.342 37.037 0.00 0.00 0.00 4.20
344 345 9.396022 TGTAGCATCTCATGAATATAGTATCGA 57.604 33.333 0.00 0.00 0.00 3.59
345 346 9.444534 GTGTAGCATCTCATGAATATAGTATCG 57.555 37.037 0.00 0.00 0.00 2.92
349 350 9.486497 CTTTGTGTAGCATCTCATGAATATAGT 57.514 33.333 0.00 0.00 0.00 2.12
350 351 9.486497 ACTTTGTGTAGCATCTCATGAATATAG 57.514 33.333 0.00 0.00 0.00 1.31
351 352 9.836864 AACTTTGTGTAGCATCTCATGAATATA 57.163 29.630 0.00 0.00 0.00 0.86
352 353 8.743085 AACTTTGTGTAGCATCTCATGAATAT 57.257 30.769 0.00 0.00 0.00 1.28
353 354 7.280876 GGAACTTTGTGTAGCATCTCATGAATA 59.719 37.037 0.00 0.00 0.00 1.75
354 355 6.094603 GGAACTTTGTGTAGCATCTCATGAAT 59.905 38.462 0.00 0.00 0.00 2.57
355 356 5.412594 GGAACTTTGTGTAGCATCTCATGAA 59.587 40.000 0.00 0.00 0.00 2.57
356 357 4.937620 GGAACTTTGTGTAGCATCTCATGA 59.062 41.667 0.00 0.00 0.00 3.07
357 358 4.201753 CGGAACTTTGTGTAGCATCTCATG 60.202 45.833 0.00 0.00 0.00 3.07
358 359 3.935203 CGGAACTTTGTGTAGCATCTCAT 59.065 43.478 0.00 0.00 0.00 2.90
359 360 3.244078 ACGGAACTTTGTGTAGCATCTCA 60.244 43.478 0.00 0.00 0.00 3.27
360 361 3.326747 ACGGAACTTTGTGTAGCATCTC 58.673 45.455 0.00 0.00 0.00 2.75
361 362 3.402628 ACGGAACTTTGTGTAGCATCT 57.597 42.857 0.00 0.00 0.00 2.90
362 363 3.991773 TGTACGGAACTTTGTGTAGCATC 59.008 43.478 0.00 0.00 0.00 3.91
363 364 3.744426 GTGTACGGAACTTTGTGTAGCAT 59.256 43.478 0.00 0.00 0.00 3.79
364 365 3.125316 GTGTACGGAACTTTGTGTAGCA 58.875 45.455 0.00 0.00 0.00 3.49
365 366 3.125316 TGTGTACGGAACTTTGTGTAGC 58.875 45.455 0.00 0.00 0.00 3.58
366 367 5.917541 ATTGTGTACGGAACTTTGTGTAG 57.082 39.130 0.00 0.00 0.00 2.74
367 368 6.680874 AAATTGTGTACGGAACTTTGTGTA 57.319 33.333 0.00 0.00 0.00 2.90
368 369 5.570234 AAATTGTGTACGGAACTTTGTGT 57.430 34.783 0.00 0.00 0.00 3.72
369 370 5.457473 GGAAAATTGTGTACGGAACTTTGTG 59.543 40.000 0.00 0.00 0.00 3.33
370 371 5.358725 AGGAAAATTGTGTACGGAACTTTGT 59.641 36.000 0.00 0.00 0.00 2.83
371 372 5.685511 CAGGAAAATTGTGTACGGAACTTTG 59.314 40.000 0.00 0.00 0.00 2.77
372 373 5.358725 ACAGGAAAATTGTGTACGGAACTTT 59.641 36.000 0.00 0.00 0.00 2.66
373 374 4.885325 ACAGGAAAATTGTGTACGGAACTT 59.115 37.500 0.00 0.00 0.00 2.66
374 375 4.457466 ACAGGAAAATTGTGTACGGAACT 58.543 39.130 0.00 0.00 0.00 3.01
375 376 4.823790 ACAGGAAAATTGTGTACGGAAC 57.176 40.909 0.00 0.00 0.00 3.62
376 377 7.513371 AATTACAGGAAAATTGTGTACGGAA 57.487 32.000 0.00 0.00 0.00 4.30
377 378 7.513371 AAATTACAGGAAAATTGTGTACGGA 57.487 32.000 0.00 0.00 0.00 4.69
378 379 8.079809 AGAAAATTACAGGAAAATTGTGTACGG 58.920 33.333 0.00 0.00 0.00 4.02
379 380 9.458374 AAGAAAATTACAGGAAAATTGTGTACG 57.542 29.630 0.00 0.00 0.00 3.67
402 403 9.554395 TGACACAACATATCAAAAAGTAGAAGA 57.446 29.630 0.00 0.00 0.00 2.87
403 404 9.599322 GTGACACAACATATCAAAAAGTAGAAG 57.401 33.333 0.00 0.00 0.00 2.85
404 405 9.337396 AGTGACACAACATATCAAAAAGTAGAA 57.663 29.630 8.59 0.00 0.00 2.10
405 406 8.773645 CAGTGACACAACATATCAAAAAGTAGA 58.226 33.333 8.59 0.00 0.00 2.59
406 407 7.535258 GCAGTGACACAACATATCAAAAAGTAG 59.465 37.037 8.59 0.00 0.00 2.57
407 408 7.359595 GCAGTGACACAACATATCAAAAAGTA 58.640 34.615 8.59 0.00 0.00 2.24
408 409 6.208644 GCAGTGACACAACATATCAAAAAGT 58.791 36.000 8.59 0.00 0.00 2.66
409 410 5.340403 CGCAGTGACACAACATATCAAAAAG 59.660 40.000 8.59 0.00 0.00 2.27
410 411 5.008118 TCGCAGTGACACAACATATCAAAAA 59.992 36.000 8.59 0.00 0.00 1.94
411 412 4.513318 TCGCAGTGACACAACATATCAAAA 59.487 37.500 8.59 0.00 0.00 2.44
412 413 4.061596 TCGCAGTGACACAACATATCAAA 58.938 39.130 8.59 0.00 0.00 2.69
413 414 3.658709 TCGCAGTGACACAACATATCAA 58.341 40.909 8.59 0.00 0.00 2.57
414 415 3.311486 TCGCAGTGACACAACATATCA 57.689 42.857 8.59 0.00 0.00 2.15
415 416 3.181520 GGTTCGCAGTGACACAACATATC 60.182 47.826 8.59 0.00 0.00 1.63
416 417 2.742053 GGTTCGCAGTGACACAACATAT 59.258 45.455 8.59 0.00 0.00 1.78
417 418 2.139917 GGTTCGCAGTGACACAACATA 58.860 47.619 8.59 0.00 0.00 2.29
418 419 0.944386 GGTTCGCAGTGACACAACAT 59.056 50.000 8.59 0.00 0.00 2.71
419 420 0.391793 TGGTTCGCAGTGACACAACA 60.392 50.000 8.59 0.00 0.00 3.33
420 421 0.730265 TTGGTTCGCAGTGACACAAC 59.270 50.000 8.59 3.26 0.00 3.32
421 422 1.601903 GATTGGTTCGCAGTGACACAA 59.398 47.619 8.59 2.85 0.00 3.33
422 423 1.202639 AGATTGGTTCGCAGTGACACA 60.203 47.619 8.59 0.00 0.00 3.72
423 424 1.195448 CAGATTGGTTCGCAGTGACAC 59.805 52.381 0.00 0.00 0.00 3.67
424 425 1.202639 ACAGATTGGTTCGCAGTGACA 60.203 47.619 0.00 0.00 0.00 3.58
425 426 1.195448 CACAGATTGGTTCGCAGTGAC 59.805 52.381 0.00 0.00 32.04 3.67
426 427 1.511850 CACAGATTGGTTCGCAGTGA 58.488 50.000 0.00 0.00 32.04 3.41
427 428 0.518636 CCACAGATTGGTTCGCAGTG 59.481 55.000 0.00 0.00 41.10 3.66
428 429 2.932663 CCACAGATTGGTTCGCAGT 58.067 52.632 0.00 0.00 41.10 4.40
437 438 6.051717 CCTCTAACTATCCAACCACAGATTG 58.948 44.000 0.00 0.00 0.00 2.67
438 439 5.964477 TCCTCTAACTATCCAACCACAGATT 59.036 40.000 0.00 0.00 0.00 2.40
439 440 5.529289 TCCTCTAACTATCCAACCACAGAT 58.471 41.667 0.00 0.00 0.00 2.90
440 441 4.942944 TCCTCTAACTATCCAACCACAGA 58.057 43.478 0.00 0.00 0.00 3.41
441 442 5.046591 TGTTCCTCTAACTATCCAACCACAG 60.047 44.000 0.00 0.00 38.99 3.66
442 443 4.841813 TGTTCCTCTAACTATCCAACCACA 59.158 41.667 0.00 0.00 38.99 4.17
443 444 5.046520 ACTGTTCCTCTAACTATCCAACCAC 60.047 44.000 0.00 0.00 38.99 4.16
444 445 5.046591 CACTGTTCCTCTAACTATCCAACCA 60.047 44.000 0.00 0.00 38.99 3.67
445 446 5.187186 TCACTGTTCCTCTAACTATCCAACC 59.813 44.000 0.00 0.00 38.99 3.77
446 447 6.282199 TCACTGTTCCTCTAACTATCCAAC 57.718 41.667 0.00 0.00 38.99 3.77
447 448 6.127054 CCATCACTGTTCCTCTAACTATCCAA 60.127 42.308 0.00 0.00 38.99 3.53
448 449 5.363868 CCATCACTGTTCCTCTAACTATCCA 59.636 44.000 0.00 0.00 38.99 3.41
449 450 5.740513 GCCATCACTGTTCCTCTAACTATCC 60.741 48.000 0.00 0.00 38.99 2.59
450 451 5.293560 GCCATCACTGTTCCTCTAACTATC 58.706 45.833 0.00 0.00 38.99 2.08
451 452 4.202161 CGCCATCACTGTTCCTCTAACTAT 60.202 45.833 0.00 0.00 38.99 2.12
452 453 3.130516 CGCCATCACTGTTCCTCTAACTA 59.869 47.826 0.00 0.00 38.99 2.24
453 454 2.093973 CGCCATCACTGTTCCTCTAACT 60.094 50.000 0.00 0.00 38.99 2.24
454 455 2.094182 TCGCCATCACTGTTCCTCTAAC 60.094 50.000 0.00 0.00 38.67 2.34
455 456 2.176045 TCGCCATCACTGTTCCTCTAA 58.824 47.619 0.00 0.00 0.00 2.10
456 457 1.847328 TCGCCATCACTGTTCCTCTA 58.153 50.000 0.00 0.00 0.00 2.43
457 458 1.134580 CATCGCCATCACTGTTCCTCT 60.135 52.381 0.00 0.00 0.00 3.69
458 459 1.293924 CATCGCCATCACTGTTCCTC 58.706 55.000 0.00 0.00 0.00 3.71
459 460 0.745845 GCATCGCCATCACTGTTCCT 60.746 55.000 0.00 0.00 0.00 3.36
460 461 1.723870 GCATCGCCATCACTGTTCC 59.276 57.895 0.00 0.00 0.00 3.62
461 462 1.349627 CGCATCGCCATCACTGTTC 59.650 57.895 0.00 0.00 0.00 3.18
462 463 0.955428 AACGCATCGCCATCACTGTT 60.955 50.000 0.00 0.00 0.00 3.16
463 464 0.955428 AAACGCATCGCCATCACTGT 60.955 50.000 0.00 0.00 0.00 3.55
464 465 0.168788 AAAACGCATCGCCATCACTG 59.831 50.000 0.00 0.00 0.00 3.66
465 466 0.447801 GAAAACGCATCGCCATCACT 59.552 50.000 0.00 0.00 0.00 3.41
466 467 0.167908 TGAAAACGCATCGCCATCAC 59.832 50.000 0.00 0.00 0.00 3.06
467 468 0.447406 CTGAAAACGCATCGCCATCA 59.553 50.000 0.00 0.00 0.00 3.07
468 469 0.447801 ACTGAAAACGCATCGCCATC 59.552 50.000 0.00 0.00 0.00 3.51
469 470 0.168788 CACTGAAAACGCATCGCCAT 59.831 50.000 0.00 0.00 0.00 4.40
470 471 1.573932 CACTGAAAACGCATCGCCA 59.426 52.632 0.00 0.00 0.00 5.69
471 472 1.154225 CCACTGAAAACGCATCGCC 60.154 57.895 0.00 0.00 0.00 5.54
472 473 0.237235 TTCCACTGAAAACGCATCGC 59.763 50.000 0.00 0.00 0.00 4.58
473 474 1.135972 CCTTCCACTGAAAACGCATCG 60.136 52.381 0.00 0.00 0.00 3.84
474 475 2.151202 TCCTTCCACTGAAAACGCATC 58.849 47.619 0.00 0.00 0.00 3.91
475 476 2.154462 CTCCTTCCACTGAAAACGCAT 58.846 47.619 0.00 0.00 0.00 4.73
476 477 1.140052 TCTCCTTCCACTGAAAACGCA 59.860 47.619 0.00 0.00 0.00 5.24
477 478 1.531578 GTCTCCTTCCACTGAAAACGC 59.468 52.381 0.00 0.00 0.00 4.84
478 479 1.792949 CGTCTCCTTCCACTGAAAACG 59.207 52.381 0.00 0.00 0.00 3.60
479 480 2.835027 ACGTCTCCTTCCACTGAAAAC 58.165 47.619 0.00 0.00 0.00 2.43
480 481 3.463944 GAACGTCTCCTTCCACTGAAAA 58.536 45.455 0.00 0.00 0.00 2.29
481 482 2.224209 GGAACGTCTCCTTCCACTGAAA 60.224 50.000 8.87 0.00 41.61 2.69
482 483 1.343465 GGAACGTCTCCTTCCACTGAA 59.657 52.381 8.87 0.00 41.61 3.02
483 484 0.966920 GGAACGTCTCCTTCCACTGA 59.033 55.000 8.87 0.00 41.61 3.41
484 485 0.037232 GGGAACGTCTCCTTCCACTG 60.037 60.000 13.94 0.00 44.68 3.66
485 486 2.363297 GGGAACGTCTCCTTCCACT 58.637 57.895 13.94 0.00 44.68 4.00
504 505 2.131294 ATAGGCGCCTCGTCATCGAC 62.131 60.000 36.73 0.00 41.35 4.20
505 506 1.897137 ATAGGCGCCTCGTCATCGA 60.897 57.895 36.73 14.03 44.12 3.59
506 507 1.730902 CATAGGCGCCTCGTCATCG 60.731 63.158 36.73 11.65 32.13 3.84
507 508 1.373497 CCATAGGCGCCTCGTCATC 60.373 63.158 36.73 0.00 32.13 2.92
508 509 2.134287 ACCATAGGCGCCTCGTCAT 61.134 57.895 36.73 19.09 32.13 3.06
509 510 2.758327 ACCATAGGCGCCTCGTCA 60.758 61.111 36.73 17.27 32.13 4.35
510 511 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
511 512 2.758327 TCACCATAGGCGCCTCGT 60.758 61.111 36.73 24.45 0.00 4.18
512 513 2.279517 GTCACCATAGGCGCCTCG 60.280 66.667 36.73 25.26 0.00 4.63
513 514 0.530870 GAAGTCACCATAGGCGCCTC 60.531 60.000 36.73 17.40 0.00 4.70
514 515 1.264749 TGAAGTCACCATAGGCGCCT 61.265 55.000 34.85 34.85 0.00 5.52
515 516 0.179045 ATGAAGTCACCATAGGCGCC 60.179 55.000 21.89 21.89 0.00 6.53
516 517 2.526304 TATGAAGTCACCATAGGCGC 57.474 50.000 0.00 0.00 0.00 6.53
517 518 5.300752 AGATTTATGAAGTCACCATAGGCG 58.699 41.667 0.00 0.00 0.00 5.52
518 519 6.291377 TGAGATTTATGAAGTCACCATAGGC 58.709 40.000 0.00 0.00 0.00 3.93
519 520 8.206867 TCTTGAGATTTATGAAGTCACCATAGG 58.793 37.037 0.00 0.00 0.00 2.57
520 521 9.775854 ATCTTGAGATTTATGAAGTCACCATAG 57.224 33.333 0.00 0.00 0.00 2.23
521 522 9.551734 CATCTTGAGATTTATGAAGTCACCATA 57.448 33.333 0.00 0.00 31.21 2.74
522 523 8.270030 TCATCTTGAGATTTATGAAGTCACCAT 58.730 33.333 0.00 0.00 31.21 3.55
523 524 7.623630 TCATCTTGAGATTTATGAAGTCACCA 58.376 34.615 0.00 0.00 31.21 4.17
524 525 8.674263 ATCATCTTGAGATTTATGAAGTCACC 57.326 34.615 0.00 0.00 32.47 4.02
534 535 9.297037 TGAGACCGTATATCATCTTGAGATTTA 57.703 33.333 0.00 0.00 30.15 1.40
535 536 8.183104 TGAGACCGTATATCATCTTGAGATTT 57.817 34.615 0.00 0.00 30.15 2.17
536 537 7.450014 ACTGAGACCGTATATCATCTTGAGATT 59.550 37.037 0.00 0.00 30.15 2.40
537 538 6.945435 ACTGAGACCGTATATCATCTTGAGAT 59.055 38.462 0.00 0.00 32.49 2.75
538 539 6.299922 ACTGAGACCGTATATCATCTTGAGA 58.700 40.000 0.00 0.00 0.00 3.27
539 540 6.429692 AGACTGAGACCGTATATCATCTTGAG 59.570 42.308 0.00 0.00 0.00 3.02
540 541 6.299922 AGACTGAGACCGTATATCATCTTGA 58.700 40.000 0.00 0.00 0.00 3.02
541 542 6.429692 AGAGACTGAGACCGTATATCATCTTG 59.570 42.308 0.00 0.00 0.00 3.02
542 543 6.539173 AGAGACTGAGACCGTATATCATCTT 58.461 40.000 0.00 0.00 0.00 2.40
543 544 6.121776 AGAGACTGAGACCGTATATCATCT 57.878 41.667 0.00 0.00 0.00 2.90
544 545 5.062934 CGAGAGACTGAGACCGTATATCATC 59.937 48.000 0.00 0.00 0.00 2.92
545 546 4.932799 CGAGAGACTGAGACCGTATATCAT 59.067 45.833 0.00 0.00 0.00 2.45
546 547 4.038883 TCGAGAGACTGAGACCGTATATCA 59.961 45.833 0.00 0.00 33.31 2.15
547 548 4.558178 TCGAGAGACTGAGACCGTATATC 58.442 47.826 0.00 0.00 33.31 1.63
548 549 4.603989 TCGAGAGACTGAGACCGTATAT 57.396 45.455 0.00 0.00 33.31 0.86
549 550 4.370049 CTTCGAGAGACTGAGACCGTATA 58.630 47.826 0.00 0.00 41.84 1.47
550 551 2.983907 TCGAGAGACTGAGACCGTAT 57.016 50.000 0.00 0.00 33.31 3.06
551 552 2.619147 CTTCGAGAGACTGAGACCGTA 58.381 52.381 0.00 0.00 41.84 4.02
552 553 1.444836 CTTCGAGAGACTGAGACCGT 58.555 55.000 0.00 0.00 41.84 4.83
553 554 0.730265 CCTTCGAGAGACTGAGACCG 59.270 60.000 0.00 0.00 41.84 4.79
554 555 1.828979 ACCTTCGAGAGACTGAGACC 58.171 55.000 0.00 0.00 41.84 3.85
555 556 3.602483 AGTACCTTCGAGAGACTGAGAC 58.398 50.000 0.00 0.00 41.84 3.36
556 557 3.261137 TGAGTACCTTCGAGAGACTGAGA 59.739 47.826 0.00 0.00 41.84 3.27
557 558 3.601435 TGAGTACCTTCGAGAGACTGAG 58.399 50.000 0.00 0.00 41.84 3.35
558 559 3.697619 TGAGTACCTTCGAGAGACTGA 57.302 47.619 0.00 0.00 41.84 3.41
559 560 5.361427 TCTATGAGTACCTTCGAGAGACTG 58.639 45.833 0.00 0.00 41.84 3.51
560 561 5.364446 TCTCTATGAGTACCTTCGAGAGACT 59.636 44.000 10.27 0.00 41.84 3.24
561 562 5.603596 TCTCTATGAGTACCTTCGAGAGAC 58.396 45.833 10.27 0.00 41.84 3.36
562 563 5.873146 TCTCTATGAGTACCTTCGAGAGA 57.127 43.478 10.27 10.27 36.89 3.10
563 564 6.816640 CCTATCTCTATGAGTACCTTCGAGAG 59.183 46.154 7.20 7.20 33.95 3.20
564 565 6.295973 CCCTATCTCTATGAGTACCTTCGAGA 60.296 46.154 0.00 0.00 0.00 4.04
565 566 5.878116 CCCTATCTCTATGAGTACCTTCGAG 59.122 48.000 0.00 0.00 0.00 4.04
566 567 5.310068 ACCCTATCTCTATGAGTACCTTCGA 59.690 44.000 0.00 0.00 0.00 3.71
567 568 5.413213 CACCCTATCTCTATGAGTACCTTCG 59.587 48.000 0.00 0.00 0.00 3.79
568 569 6.207810 CACACCCTATCTCTATGAGTACCTTC 59.792 46.154 0.00 0.00 0.00 3.46
569 570 6.071984 CACACCCTATCTCTATGAGTACCTT 58.928 44.000 0.00 0.00 0.00 3.50
570 571 5.636123 CACACCCTATCTCTATGAGTACCT 58.364 45.833 0.00 0.00 0.00 3.08
571 572 4.218852 GCACACCCTATCTCTATGAGTACC 59.781 50.000 0.00 0.00 0.00 3.34
572 573 4.083217 CGCACACCCTATCTCTATGAGTAC 60.083 50.000 0.00 0.00 0.00 2.73
573 574 4.072839 CGCACACCCTATCTCTATGAGTA 58.927 47.826 0.00 0.00 0.00 2.59
574 575 2.887783 CGCACACCCTATCTCTATGAGT 59.112 50.000 0.00 0.00 0.00 3.41
575 576 2.887783 ACGCACACCCTATCTCTATGAG 59.112 50.000 0.00 0.00 0.00 2.90
576 577 2.623416 CACGCACACCCTATCTCTATGA 59.377 50.000 0.00 0.00 0.00 2.15
577 578 2.362397 ACACGCACACCCTATCTCTATG 59.638 50.000 0.00 0.00 0.00 2.23
578 579 2.667470 ACACGCACACCCTATCTCTAT 58.333 47.619 0.00 0.00 0.00 1.98
579 580 2.139323 ACACGCACACCCTATCTCTA 57.861 50.000 0.00 0.00 0.00 2.43
580 581 2.139323 TACACGCACACCCTATCTCT 57.861 50.000 0.00 0.00 0.00 3.10
581 582 2.743938 CATACACGCACACCCTATCTC 58.256 52.381 0.00 0.00 0.00 2.75
582 583 1.202533 GCATACACGCACACCCTATCT 60.203 52.381 0.00 0.00 0.00 1.98
583 584 1.217882 GCATACACGCACACCCTATC 58.782 55.000 0.00 0.00 0.00 2.08
584 585 0.529773 CGCATACACGCACACCCTAT 60.530 55.000 0.00 0.00 0.00 2.57
585 586 1.153726 CGCATACACGCACACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
586 587 2.434185 CGCATACACGCACACCCT 60.434 61.111 0.00 0.00 0.00 4.34
587 588 1.847890 AAACGCATACACGCACACCC 61.848 55.000 0.00 0.00 36.19 4.61
588 589 0.791422 TAAACGCATACACGCACACC 59.209 50.000 0.00 0.00 36.19 4.16
589 590 2.798834 ATAAACGCATACACGCACAC 57.201 45.000 0.00 0.00 36.19 3.82
590 591 3.307512 CCTTATAAACGCATACACGCACA 59.692 43.478 0.00 0.00 36.19 4.57
591 592 3.552699 TCCTTATAAACGCATACACGCAC 59.447 43.478 0.00 0.00 36.19 5.34
592 593 3.783191 TCCTTATAAACGCATACACGCA 58.217 40.909 0.00 0.00 36.19 5.24
593 594 4.446385 TCATCCTTATAAACGCATACACGC 59.554 41.667 0.00 0.00 36.19 5.34
594 595 5.690409 ACTCATCCTTATAAACGCATACACG 59.310 40.000 0.00 0.00 39.50 4.49
595 596 6.479001 ACACTCATCCTTATAAACGCATACAC 59.521 38.462 0.00 0.00 0.00 2.90
596 597 6.578944 ACACTCATCCTTATAAACGCATACA 58.421 36.000 0.00 0.00 0.00 2.29
597 598 8.648097 CATACACTCATCCTTATAAACGCATAC 58.352 37.037 0.00 0.00 0.00 2.39
598 599 7.330946 GCATACACTCATCCTTATAAACGCATA 59.669 37.037 0.00 0.00 0.00 3.14
599 600 6.147821 GCATACACTCATCCTTATAAACGCAT 59.852 38.462 0.00 0.00 0.00 4.73
600 601 5.465390 GCATACACTCATCCTTATAAACGCA 59.535 40.000 0.00 0.00 0.00 5.24
601 602 5.696724 AGCATACACTCATCCTTATAAACGC 59.303 40.000 0.00 0.00 0.00 4.84
602 603 6.088217 CGAGCATACACTCATCCTTATAAACG 59.912 42.308 0.00 0.00 36.42 3.60
603 604 6.924060 ACGAGCATACACTCATCCTTATAAAC 59.076 38.462 0.00 0.00 36.42 2.01
604 605 7.050970 ACGAGCATACACTCATCCTTATAAA 57.949 36.000 0.00 0.00 36.42 1.40
605 606 6.650427 ACGAGCATACACTCATCCTTATAA 57.350 37.500 0.00 0.00 36.42 0.98
606 607 7.393515 ACATACGAGCATACACTCATCCTTATA 59.606 37.037 0.00 0.00 36.42 0.98
607 608 6.209589 ACATACGAGCATACACTCATCCTTAT 59.790 38.462 0.00 0.00 36.42 1.73
608 609 5.535030 ACATACGAGCATACACTCATCCTTA 59.465 40.000 0.00 0.00 36.42 2.69
609 610 4.342378 ACATACGAGCATACACTCATCCTT 59.658 41.667 0.00 0.00 36.42 3.36
610 611 3.891977 ACATACGAGCATACACTCATCCT 59.108 43.478 0.00 0.00 36.42 3.24
611 612 4.244425 ACATACGAGCATACACTCATCC 57.756 45.455 0.00 0.00 36.42 3.51
612 613 7.219154 GCTTATACATACGAGCATACACTCATC 59.781 40.741 0.00 0.00 36.42 2.92
613 614 7.030165 GCTTATACATACGAGCATACACTCAT 58.970 38.462 0.00 0.00 36.42 2.90
614 615 6.016610 TGCTTATACATACGAGCATACACTCA 60.017 38.462 0.00 0.00 39.97 3.41
615 616 6.379386 TGCTTATACATACGAGCATACACTC 58.621 40.000 0.00 0.00 39.97 3.51
616 617 6.327279 TGCTTATACATACGAGCATACACT 57.673 37.500 0.00 0.00 39.97 3.55
623 624 4.084537 ACGCAAATGCTTATACATACGAGC 60.085 41.667 3.63 0.00 39.32 5.03
624 625 5.402568 AGACGCAAATGCTTATACATACGAG 59.597 40.000 3.63 0.00 39.32 4.18
625 626 5.174943 CAGACGCAAATGCTTATACATACGA 59.825 40.000 3.63 0.00 39.32 3.43
626 627 5.051039 ACAGACGCAAATGCTTATACATACG 60.051 40.000 3.63 0.00 39.32 3.06
627 628 6.287107 ACAGACGCAAATGCTTATACATAC 57.713 37.500 3.63 0.00 39.32 2.39
628 629 7.207383 AGTACAGACGCAAATGCTTATACATA 58.793 34.615 3.63 0.00 39.32 2.29
629 630 6.049149 AGTACAGACGCAAATGCTTATACAT 58.951 36.000 3.63 0.00 39.32 2.29
630 631 5.416083 AGTACAGACGCAAATGCTTATACA 58.584 37.500 3.63 0.00 39.32 2.29
631 632 5.968387 AGTACAGACGCAAATGCTTATAC 57.032 39.130 3.63 0.00 39.32 1.47
632 633 8.657074 AATTAGTACAGACGCAAATGCTTATA 57.343 30.769 3.63 0.00 39.32 0.98
633 634 7.553881 AATTAGTACAGACGCAAATGCTTAT 57.446 32.000 3.63 0.00 39.32 1.73
634 635 6.978343 AATTAGTACAGACGCAAATGCTTA 57.022 33.333 3.63 0.00 39.32 3.09
635 636 5.880054 AATTAGTACAGACGCAAATGCTT 57.120 34.783 3.63 0.00 39.32 3.91
636 637 5.880054 AAATTAGTACAGACGCAAATGCT 57.120 34.783 3.63 0.00 39.32 3.79
637 638 7.960738 TCTTAAAATTAGTACAGACGCAAATGC 59.039 33.333 0.00 0.00 37.78 3.56
638 639 9.820229 TTCTTAAAATTAGTACAGACGCAAATG 57.180 29.630 0.00 0.00 0.00 2.32
685 686 1.140252 GGCCGGTGGTAGTATCACATT 59.860 52.381 15.36 0.00 36.90 2.71
688 689 1.696063 TAGGCCGGTGGTAGTATCAC 58.304 55.000 4.87 4.87 34.61 3.06
752 782 0.038892 GAGCCAAACGGTCGTGTAGA 60.039 55.000 0.00 0.00 0.00 2.59
874 904 4.862371 AGAGTAGAGTAGGTGGAGGAAAG 58.138 47.826 0.00 0.00 0.00 2.62
876 906 3.202595 GGAGAGTAGAGTAGGTGGAGGAA 59.797 52.174 0.00 0.00 0.00 3.36
877 907 2.778850 GGAGAGTAGAGTAGGTGGAGGA 59.221 54.545 0.00 0.00 0.00 3.71
878 908 2.158579 GGGAGAGTAGAGTAGGTGGAGG 60.159 59.091 0.00 0.00 0.00 4.30
923 953 1.271379 CGGAGTGAGTGGGTTTGGATT 60.271 52.381 0.00 0.00 0.00 3.01
924 954 0.324943 CGGAGTGAGTGGGTTTGGAT 59.675 55.000 0.00 0.00 0.00 3.41
925 955 1.752198 CGGAGTGAGTGGGTTTGGA 59.248 57.895 0.00 0.00 0.00 3.53
926 956 1.966451 GCGGAGTGAGTGGGTTTGG 60.966 63.158 0.00 0.00 0.00 3.28
927 957 0.817634 TTGCGGAGTGAGTGGGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
928 958 0.106918 TTTGCGGAGTGAGTGGGTTT 60.107 50.000 0.00 0.00 0.00 3.27
929 959 0.106918 TTTTGCGGAGTGAGTGGGTT 60.107 50.000 0.00 0.00 0.00 4.11
930 960 0.818040 GTTTTGCGGAGTGAGTGGGT 60.818 55.000 0.00 0.00 0.00 4.51
931 961 1.515521 GGTTTTGCGGAGTGAGTGGG 61.516 60.000 0.00 0.00 0.00 4.61
932 962 0.535102 AGGTTTTGCGGAGTGAGTGG 60.535 55.000 0.00 0.00 0.00 4.00
933 963 0.868406 GAGGTTTTGCGGAGTGAGTG 59.132 55.000 0.00 0.00 0.00 3.51
936 966 0.884704 GCAGAGGTTTTGCGGAGTGA 60.885 55.000 0.00 0.00 0.00 3.41
941 971 1.781025 TTCGTGCAGAGGTTTTGCGG 61.781 55.000 0.00 0.00 44.40 5.69
970 1000 2.480419 CTCGCTCTAGTTGTTGGGTTTG 59.520 50.000 0.00 0.00 0.00 2.93
973 1003 0.037232 GCTCGCTCTAGTTGTTGGGT 60.037 55.000 0.00 0.00 0.00 4.51
976 1006 1.914634 ATCGCTCGCTCTAGTTGTTG 58.085 50.000 0.00 0.00 0.00 3.33
978 1008 2.226912 GGATATCGCTCGCTCTAGTTGT 59.773 50.000 0.00 0.00 0.00 3.32
1367 1397 2.362077 ACACACTGAAATTTCACCAGGC 59.638 45.455 16.91 0.00 32.90 4.85
1428 1460 0.248134 CGACGCTGCTACCTAGTGTC 60.248 60.000 8.25 8.25 46.76 3.67
1429 1461 0.959372 ACGACGCTGCTACCTAGTGT 60.959 55.000 0.00 0.00 41.24 3.55
1446 1561 3.368495 TGCGCTGTATAGATACAACACG 58.632 45.455 9.73 8.71 42.20 4.49
1465 1580 1.233019 CATACTAGGCACCAGCATGC 58.767 55.000 10.51 10.51 44.61 4.06
1483 1601 1.822990 GTCCTCCTCACGGATTACACA 59.177 52.381 0.00 0.00 39.01 3.72
1494 1612 4.222810 TCATCAAAAGATTCGTCCTCCTCA 59.777 41.667 0.00 0.00 0.00 3.86
1496 1614 4.467795 TCTCATCAAAAGATTCGTCCTCCT 59.532 41.667 0.00 0.00 0.00 3.69
1517 1635 7.304497 ACTGAACTGTAAAACCTATCACTCT 57.696 36.000 0.00 0.00 0.00 3.24
1526 1644 9.708092 AGTAGAATAGAACTGAACTGTAAAACC 57.292 33.333 0.00 0.00 0.00 3.27
1546 1666 5.676552 TGCTGTTTTGGTCAAGTAGTAGAA 58.323 37.500 0.00 0.00 0.00 2.10
1574 1694 9.883142 ATTCCAGTTCTCAGTTTTTATCTCTAG 57.117 33.333 0.00 0.00 0.00 2.43
1615 1776 6.929625 AGCTATCTACGCACATAATTCTGAT 58.070 36.000 0.00 0.00 0.00 2.90
1628 1789 5.448904 GGGCTATACTGTTAGCTATCTACGC 60.449 48.000 16.12 0.00 43.37 4.42
1930 2093 6.258947 ACTTGCTAAACTCAAGACTTCAAGAC 59.741 38.462 13.10 0.00 42.52 3.01
2032 2196 4.522789 ACCAGCCAACCAATAAGTAGTTTG 59.477 41.667 0.00 0.00 0.00 2.93
2033 2197 4.736473 ACCAGCCAACCAATAAGTAGTTT 58.264 39.130 0.00 0.00 0.00 2.66
2034 2198 4.382386 ACCAGCCAACCAATAAGTAGTT 57.618 40.909 0.00 0.00 0.00 2.24
2035 2199 4.202524 TGAACCAGCCAACCAATAAGTAGT 60.203 41.667 0.00 0.00 0.00 2.73
2036 2200 4.331968 TGAACCAGCCAACCAATAAGTAG 58.668 43.478 0.00 0.00 0.00 2.57
2054 2218 8.352942 ACTTGACTAAACTGGATTGAAATGAAC 58.647 33.333 0.00 0.00 0.00 3.18
2132 2296 3.503363 TCTGTATTTTTGCACCAGAGCTG 59.497 43.478 0.00 0.00 34.99 4.24
2404 2570 4.485024 ACATCATACGAGATACACCGAC 57.515 45.455 0.00 0.00 0.00 4.79
2456 2622 5.499139 TTAAAGGAATTAAGCTGCATCCG 57.501 39.130 1.02 0.00 35.31 4.18
2527 2693 1.871039 GTGTTCGTTGTACTGCCATGT 59.129 47.619 0.00 0.00 0.00 3.21
2596 2765 3.133691 CAGCTCACTTCAGTGCTTGTAA 58.866 45.455 1.74 0.00 45.25 2.41
2739 2914 9.758651 TTCCGATCTAAAATTATCTTTCATCGA 57.241 29.630 0.00 0.00 35.35 3.59
2770 2945 7.223584 TCTTTGTTCATGTATCTTCAGGTTGA 58.776 34.615 0.00 0.00 0.00 3.18
2796 2971 1.204941 CTCGGATCCGGTCTTTGTTCT 59.795 52.381 32.79 0.00 40.25 3.01
2831 3006 2.867429 CGAGATTTGATTGGTGGTTGC 58.133 47.619 0.00 0.00 0.00 4.17
2873 3049 1.605232 TCTAGCAGTTTCGACGTGTGA 59.395 47.619 0.00 0.00 0.00 3.58
2874 3050 2.046283 TCTAGCAGTTTCGACGTGTG 57.954 50.000 0.00 0.00 0.00 3.82
2875 3051 3.189910 TGTATCTAGCAGTTTCGACGTGT 59.810 43.478 0.00 0.00 0.00 4.49
2879 3055 4.106029 TGGTGTATCTAGCAGTTTCGAC 57.894 45.455 0.00 0.00 0.00 4.20
2881 3057 4.271049 CCAATGGTGTATCTAGCAGTTTCG 59.729 45.833 0.00 0.00 0.00 3.46
2882 3058 4.576463 CCCAATGGTGTATCTAGCAGTTTC 59.424 45.833 0.00 0.00 0.00 2.78
2883 3059 4.227300 TCCCAATGGTGTATCTAGCAGTTT 59.773 41.667 0.00 0.00 0.00 2.66
2884 3060 3.780294 TCCCAATGGTGTATCTAGCAGTT 59.220 43.478 0.00 0.00 0.00 3.16
2885 3061 3.134804 GTCCCAATGGTGTATCTAGCAGT 59.865 47.826 0.00 0.00 0.00 4.40
2894 3076 2.302509 CCCCCGTCCCAATGGTGTA 61.303 63.158 0.00 0.00 0.00 2.90
2927 3109 5.470098 GCGGCTTATTGAAGATGGAATAAGA 59.530 40.000 13.24 0.00 41.62 2.10
2944 3126 4.124351 CGAGACGGTGGCGGCTTA 62.124 66.667 11.43 0.00 0.00 3.09
2953 3135 0.889638 TGCTCAAGAGACGAGACGGT 60.890 55.000 0.32 0.00 31.84 4.83
2986 3172 7.633193 TTTAGGTGCTTCTTCAAGTTTTGTA 57.367 32.000 0.00 0.00 31.45 2.41
3065 3252 1.229082 ACGTCTCCTGTGGCCCTAA 60.229 57.895 0.00 0.00 0.00 2.69
3068 3255 3.302347 CTCACGTCTCCTGTGGCCC 62.302 68.421 0.00 0.00 37.91 5.80
3085 3272 3.208692 AGGTGAGATAGACCCCAATCTCT 59.791 47.826 12.19 0.00 45.52 3.10
3091 3278 2.940514 TTCAGGTGAGATAGACCCCA 57.059 50.000 0.00 0.00 33.51 4.96
3094 3281 5.407407 TCACTTTTCAGGTGAGATAGACC 57.593 43.478 0.00 0.00 38.57 3.85
3126 3313 5.700722 ATATACTACGGTCGAGAATGCAA 57.299 39.130 0.00 0.00 0.00 4.08
3153 3340 4.957296 ACTGACACCAACTTTAGTTCGAT 58.043 39.130 0.00 0.00 35.83 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.