Multiple sequence alignment - TraesCS2D01G301100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G301100 chr2D 100.000 9519 0 0 1 9519 383551834 383561352 0.000000e+00 17579.0
1 TraesCS2D01G301100 chr2D 88.627 255 22 5 9272 9519 34271966 34271712 4.320000e-78 303.0
2 TraesCS2D01G301100 chr2D 94.828 58 3 0 2832 2889 155514694 155514637 3.660000e-14 91.6
3 TraesCS2D01G301100 chr2B 94.966 4291 144 23 5035 9267 454015464 454019740 0.000000e+00 6661.0
4 TraesCS2D01G301100 chr2B 95.652 3956 94 34 555 4468 454010945 454014864 0.000000e+00 6281.0
5 TraesCS2D01G301100 chr2B 97.441 547 12 2 4467 5013 454014924 454015468 0.000000e+00 931.0
6 TraesCS2D01G301100 chr2B 96.981 265 8 0 288 552 159258191 159258455 6.780000e-121 446.0
7 TraesCS2D01G301100 chr2B 92.780 277 19 1 2 277 454010639 454010915 5.360000e-107 399.0
8 TraesCS2D01G301100 chr2B 93.431 137 6 3 9268 9403 545161631 545161497 5.830000e-47 200.0
9 TraesCS2D01G301100 chr2B 80.565 283 27 13 9262 9518 130010936 130011216 9.760000e-45 193.0
10 TraesCS2D01G301100 chr2B 90.780 141 9 4 9267 9405 793438177 793438315 1.630000e-42 185.0
11 TraesCS2D01G301100 chr2B 88.660 97 8 2 5852 5948 316008112 316008019 2.170000e-21 115.0
12 TraesCS2D01G301100 chr2B 98.148 54 1 0 7777 7830 454018162 454018215 2.830000e-15 95.3
13 TraesCS2D01G301100 chr2B 94.828 58 3 0 2832 2889 8536375 8536432 3.660000e-14 91.6
14 TraesCS2D01G301100 chr2A 92.565 1856 62 17 7726 9519 518335916 518337757 0.000000e+00 2593.0
15 TraesCS2D01G301100 chr2A 96.210 1293 29 7 6169 7443 518334329 518335619 0.000000e+00 2098.0
16 TraesCS2D01G301100 chr2A 96.358 1263 32 10 1877 3138 518329647 518330896 0.000000e+00 2065.0
17 TraesCS2D01G301100 chr2A 95.373 1167 38 8 4467 5627 518332434 518333590 0.000000e+00 1842.0
18 TraesCS2D01G301100 chr2A 93.770 915 24 8 603 1511 518328381 518329268 0.000000e+00 1343.0
19 TraesCS2D01G301100 chr2A 95.437 789 22 5 3670 4451 518331583 518332364 0.000000e+00 1245.0
20 TraesCS2D01G301100 chr2A 98.378 555 9 0 3118 3672 518330915 518331469 0.000000e+00 976.0
21 TraesCS2D01G301100 chr2A 95.495 555 16 3 5625 6170 518333693 518334247 0.000000e+00 878.0
22 TraesCS2D01G301100 chr2A 94.828 348 16 2 7483 7830 518335624 518335969 8.410000e-150 542.0
23 TraesCS2D01G301100 chr2A 93.448 290 17 2 2 290 518328040 518328328 6.830000e-116 429.0
24 TraesCS2D01G301100 chr2A 88.022 359 17 4 1546 1881 518329267 518329622 1.490000e-107 401.0
25 TraesCS2D01G301100 chr2A 81.295 278 24 11 9267 9518 678039654 678039929 5.830000e-47 200.0
26 TraesCS2D01G301100 chr2A 81.071 280 25 11 9266 9519 21147667 21147390 2.100000e-46 198.0
27 TraesCS2D01G301100 chr2A 91.398 93 8 0 1960 2052 739635551 739635459 2.790000e-25 128.0
28 TraesCS2D01G301100 chr2A 100.000 38 0 0 562 599 385002741 385002704 4.770000e-08 71.3
29 TraesCS2D01G301100 chr5D 97.753 267 6 0 286 552 446272043 446272309 2.420000e-125 460.0
30 TraesCS2D01G301100 chr5D 82.721 272 23 11 9269 9518 133539276 133539007 4.480000e-53 220.0
31 TraesCS2D01G301100 chr5D 84.892 139 20 1 1049 1187 539458341 539458478 1.290000e-28 139.0
32 TraesCS2D01G301100 chr7B 97.048 271 7 1 289 559 296755057 296754788 1.130000e-123 455.0
33 TraesCS2D01G301100 chr7B 96.970 33 1 0 1496 1528 334806699 334806731 1.000000e-03 56.5
34 TraesCS2D01G301100 chr4B 97.358 265 7 0 289 553 25394275 25394539 1.460000e-122 451.0
35 TraesCS2D01G301100 chr4B 92.941 85 6 0 1967 2051 420202957 420202873 3.610000e-24 124.0
36 TraesCS2D01G301100 chr4B 90.426 94 5 4 1960 2051 95869556 95869647 4.670000e-23 121.0
37 TraesCS2D01G301100 chr1B 97.358 265 7 0 288 552 570480432 570480168 1.460000e-122 451.0
38 TraesCS2D01G301100 chr5B 97.348 264 7 0 289 552 531548401 531548138 5.240000e-122 449.0
39 TraesCS2D01G301100 chr5B 95.668 277 12 0 286 562 687121916 687122192 6.780000e-121 446.0
40 TraesCS2D01G301100 chr5B 82.079 279 23 13 9266 9519 594753544 594753820 7.490000e-51 213.0
41 TraesCS2D01G301100 chr5B 84.892 139 20 1 1049 1187 681077669 681077806 1.290000e-28 139.0
42 TraesCS2D01G301100 chr1A 97.004 267 8 0 286 552 461783958 461784224 5.240000e-122 449.0
43 TraesCS2D01G301100 chr1A 83.154 279 19 10 9267 9519 552459131 552458855 7.440000e-56 230.0
44 TraesCS2D01G301100 chr1A 93.976 83 5 0 5852 5934 223939662 223939580 1.000000e-24 126.0
45 TraesCS2D01G301100 chr1A 94.828 58 3 0 2832 2889 560828375 560828432 3.660000e-14 91.6
46 TraesCS2D01G301100 chr6B 96.981 265 8 0 288 552 530999741 531000005 6.780000e-121 446.0
47 TraesCS2D01G301100 chr6B 82.014 278 23 16 9268 9519 710232350 710232626 2.690000e-50 211.0
48 TraesCS2D01G301100 chr6B 93.220 59 4 0 2832 2890 197769386 197769328 4.740000e-13 87.9
49 TraesCS2D01G301100 chr6B 93.220 59 4 0 2832 2890 197770558 197770500 4.740000e-13 87.9
50 TraesCS2D01G301100 chr6D 82.918 281 20 13 9266 9519 458533050 458532771 2.670000e-55 228.0
51 TraesCS2D01G301100 chr6D 93.220 59 4 0 2832 2890 425077915 425077857 4.740000e-13 87.9
52 TraesCS2D01G301100 chr4D 82.979 282 19 15 9262 9519 343092301 343092577 2.670000e-55 228.0
53 TraesCS2D01G301100 chr3D 80.866 277 27 8 9269 9519 4927287 4927563 2.710000e-45 195.0
54 TraesCS2D01G301100 chr3D 89.262 149 11 5 9258 9403 458310488 458310634 2.110000e-41 182.0
55 TraesCS2D01G301100 chr3D 94.118 85 5 0 1967 2051 324311164 324311080 7.760000e-26 130.0
56 TraesCS2D01G301100 chr3D 92.771 83 6 0 5852 5934 467283575 467283657 4.670000e-23 121.0
57 TraesCS2D01G301100 chr3D 88.776 98 10 1 1954 2051 317739472 317739376 1.680000e-22 119.0
58 TraesCS2D01G301100 chr3D 100.000 28 0 0 1501 1528 418724800 418724773 1.700000e-02 52.8
59 TraesCS2D01G301100 chr4A 85.612 139 19 1 1049 1187 628944724 628944587 2.770000e-30 145.0
60 TraesCS2D01G301100 chr3A 95.122 82 4 0 5852 5933 460814635 460814554 7.760000e-26 130.0
61 TraesCS2D01G301100 chr3A 91.765 85 7 0 1967 2051 58929424 58929340 1.680000e-22 119.0
62 TraesCS2D01G301100 chr3A 94.828 58 3 0 2832 2889 28662365 28662422 3.660000e-14 91.6
63 TraesCS2D01G301100 chr3A 94.828 58 3 0 2832 2889 28728175 28728232 3.660000e-14 91.6
64 TraesCS2D01G301100 chr3A 96.970 33 1 0 565 597 443428910 443428878 1.000000e-03 56.5
65 TraesCS2D01G301100 chr3A 100.000 28 0 0 1501 1528 532452590 532452617 1.700000e-02 52.8
66 TraesCS2D01G301100 chr7D 93.976 83 5 0 5852 5934 446214942 446215024 1.000000e-24 126.0
67 TraesCS2D01G301100 chr7A 93.103 87 5 1 5852 5937 696172002 696172088 1.000000e-24 126.0
68 TraesCS2D01G301100 chr7A 90.426 94 8 1 1967 2059 433736509 433736416 1.300000e-23 122.0
69 TraesCS2D01G301100 chr3B 93.902 82 5 0 5852 5933 440886228 440886309 3.610000e-24 124.0
70 TraesCS2D01G301100 chr3B 96.970 33 1 0 565 597 426006943 426006911 1.000000e-03 56.5
71 TraesCS2D01G301100 chr3B 88.889 45 5 0 1494 1538 473535984 473535940 1.000000e-03 56.5
72 TraesCS2D01G301100 chr3B 100.000 28 0 0 1501 1528 545063818 545063791 1.700000e-02 52.8
73 TraesCS2D01G301100 chr6A 96.875 32 1 0 1497 1528 200454438 200454407 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G301100 chr2D 383551834 383561352 9518 False 17579.000000 17579 100.000000 1 9519 1 chr2D.!!$F1 9518
1 TraesCS2D01G301100 chr2B 454010639 454019740 9101 False 2873.460000 6661 95.797400 2 9267 5 chr2B.!!$F5 9265
2 TraesCS2D01G301100 chr2A 518328040 518337757 9717 False 1310.181818 2593 94.534909 2 9519 11 chr2A.!!$F2 9517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 316 0.702902 TGAACTACTCCCTCCGTCCT 59.297 55.000 0.00 0.00 0.00 3.85 F
547 561 0.893447 ACTCGTTAAAGGACGGAGGG 59.107 55.000 0.00 0.00 42.98 4.30 F
1284 1304 0.106708 TCTGGTGTCAGTTGGTGAGC 59.893 55.000 0.00 0.00 41.59 4.26 F
1587 1615 0.606673 GGTTTTGCTCTCGGAAGCCT 60.607 55.000 7.36 0.00 41.77 4.58 F
1600 1628 1.271379 GGAAGCCTGTCTTGCCTGTAA 60.271 52.381 0.00 0.00 37.18 2.41 F
1710 1739 1.617322 CTGCGTAGTCTGGGGCTATA 58.383 55.000 0.00 0.00 0.00 1.31 F
1959 2039 1.757118 ACATACAGGCGCATCTACTGT 59.243 47.619 18.13 18.13 46.30 3.55 F
2060 2140 2.431057 ACGGAGGGAGTATGTCATTGTC 59.569 50.000 0.00 0.00 0.00 3.18 F
4115 4350 0.391130 TACCGTGCCTCTGTTCATGC 60.391 55.000 0.00 0.00 0.00 4.06 F
5094 5397 0.175760 GGTTAGGATGTCAGCGCTGA 59.824 55.000 35.30 35.30 37.24 4.26 F
6419 6937 0.328258 ACCTGGTTTCGGGAAGATGG 59.672 55.000 0.00 0.00 42.08 3.51 F
7667 8197 0.823356 ACAACACCACCAGCCACATC 60.823 55.000 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1292 0.179020 CCAACCAGCTCACCAACTGA 60.179 55.000 0.00 0.0 35.90 3.41 R
2421 2502 0.865769 CCCAAGTCCGAAAACAGTCG 59.134 55.000 0.00 0.0 40.77 4.18 R
2493 2574 1.306568 AGAAGTGCCTCTCTCCCCC 60.307 63.158 0.00 0.0 0.00 5.40 R
2657 2738 3.271250 ACACCATGTGAGCCCATTC 57.729 52.632 0.49 0.0 36.96 2.67 R
3827 4062 6.876789 TGAAACGATACAAGGAAATAGAGCAA 59.123 34.615 0.00 0.0 0.00 3.91 R
3871 4106 4.376225 TTCGGGAGATAAAAGGTTGGTT 57.624 40.909 0.00 0.0 39.57 3.67 R
3872 4107 4.376225 TTTCGGGAGATAAAAGGTTGGT 57.624 40.909 0.00 0.0 39.57 3.67 R
4231 4467 4.123497 TGAATGAACTAGATGGTCACCG 57.877 45.455 0.00 0.0 46.28 4.94 R
5454 5758 3.099905 CCAGACTGATGTCCTACCTTCA 58.900 50.000 3.32 0.0 43.91 3.02 R
7091 7621 9.664332 CTCCATTCTAAGGTAGATTATGATTGG 57.336 37.037 0.00 0.0 34.22 3.16 R
8092 8674 0.837691 ATCACCAGCTCCAGTGTCCA 60.838 55.000 7.69 0.0 35.45 4.02 R
9190 9839 0.399949 AGGTCACCCTGTCACAAGGA 60.400 55.000 0.00 0.0 40.58 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.290294 AGCTTAAAAATGATCAAGTGCCAT 57.710 33.333 0.00 0.00 0.00 4.40
69 70 6.183360 TGCCATAGTTTGTGAAAGCTACAAAA 60.183 34.615 13.48 4.00 46.10 2.44
71 72 7.384932 GCCATAGTTTGTGAAAGCTACAAAATT 59.615 33.333 16.11 10.04 46.10 1.82
81 82 8.430063 GTGAAAGCTACAAAATTGATTGTGATG 58.570 33.333 5.88 0.00 43.13 3.07
94 95 9.651913 AATTGATTGTGATGTTTTGGGTAATAC 57.348 29.630 0.00 0.00 0.00 1.89
191 192 6.958752 CGCAATTACTAACGATGTCATTTTCA 59.041 34.615 0.00 0.00 0.00 2.69
290 304 3.430895 TCCGATTCGCAGTTTTGAACTAC 59.569 43.478 0.00 0.00 40.46 2.73
291 305 3.432252 CCGATTCGCAGTTTTGAACTACT 59.568 43.478 0.00 0.00 40.46 2.57
292 306 4.434330 CCGATTCGCAGTTTTGAACTACTC 60.434 45.833 0.00 0.00 40.46 2.59
293 307 4.434330 CGATTCGCAGTTTTGAACTACTCC 60.434 45.833 0.00 0.00 40.46 3.85
296 310 2.737252 CGCAGTTTTGAACTACTCCCTC 59.263 50.000 0.00 0.00 40.46 4.30
297 311 3.075148 GCAGTTTTGAACTACTCCCTCC 58.925 50.000 0.00 0.00 40.46 4.30
298 312 3.326747 CAGTTTTGAACTACTCCCTCCG 58.673 50.000 0.00 0.00 40.46 4.63
300 314 3.006644 AGTTTTGAACTACTCCCTCCGTC 59.993 47.826 0.00 0.00 40.69 4.79
302 316 0.702902 TGAACTACTCCCTCCGTCCT 59.297 55.000 0.00 0.00 0.00 3.85
303 317 1.076677 TGAACTACTCCCTCCGTCCTT 59.923 52.381 0.00 0.00 0.00 3.36
304 318 2.177734 GAACTACTCCCTCCGTCCTTT 58.822 52.381 0.00 0.00 0.00 3.11
306 320 3.463048 ACTACTCCCTCCGTCCTTTAA 57.537 47.619 0.00 0.00 0.00 1.52
307 321 3.782992 ACTACTCCCTCCGTCCTTTAAA 58.217 45.455 0.00 0.00 0.00 1.52
308 322 3.768215 ACTACTCCCTCCGTCCTTTAAAG 59.232 47.826 8.32 8.32 0.00 1.85
309 323 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
310 324 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
311 325 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
312 326 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
313 327 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
314 328 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
315 329 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
316 330 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
317 331 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
318 332 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
319 333 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
320 334 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
321 335 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
322 336 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
323 337 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
324 338 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
325 339 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
326 340 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
327 341 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
328 342 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
329 343 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
330 344 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
331 345 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
336 350 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
337 351 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
338 352 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
339 353 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
340 354 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
341 355 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
342 356 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
343 357 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
344 358 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
345 359 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
346 360 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
347 361 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
348 362 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
349 363 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
350 364 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
351 365 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
352 366 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
353 367 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
360 374 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
361 375 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
362 376 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
363 377 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
364 378 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
365 379 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
366 380 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
367 381 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
368 382 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
369 383 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
370 384 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
371 385 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
372 386 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
373 387 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
374 388 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
375 389 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
376 390 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
377 391 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
378 392 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
379 393 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
380 394 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
381 395 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
382 396 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
383 397 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
389 403 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
448 462 9.764363 ATCACGAATCTAATGCTACTAATTTGA 57.236 29.630 0.00 0.00 0.00 2.69
449 463 9.764363 TCACGAATCTAATGCTACTAATTTGAT 57.236 29.630 0.00 0.00 33.00 2.57
450 464 9.803130 CACGAATCTAATGCTACTAATTTGATG 57.197 33.333 0.00 0.00 32.33 3.07
451 465 8.993121 ACGAATCTAATGCTACTAATTTGATGG 58.007 33.333 0.00 0.00 32.33 3.51
452 466 7.959651 CGAATCTAATGCTACTAATTTGATGGC 59.040 37.037 0.00 0.00 32.33 4.40
453 467 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
454 468 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
455 469 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
456 470 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
522 536 9.541143 AAAGTTTGACTTTTCAAGAAAGTTGAA 57.459 25.926 5.72 0.00 45.38 2.69
523 537 9.541143 AAGTTTGACTTTTCAAGAAAGTTGAAA 57.459 25.926 8.49 8.49 42.79 2.69
524 538 9.196552 AGTTTGACTTTTCAAGAAAGTTGAAAG 57.803 29.630 11.56 9.28 45.55 2.62
525 539 8.978539 GTTTGACTTTTCAAGAAAGTTGAAAGT 58.021 29.630 11.56 11.59 45.55 2.66
527 541 9.620660 TTGACTTTTCAAGAAAGTTGAAAGTAC 57.379 29.630 11.56 8.41 45.55 2.73
528 542 8.788806 TGACTTTTCAAGAAAGTTGAAAGTACA 58.211 29.630 11.56 10.20 45.55 2.90
529 543 8.965986 ACTTTTCAAGAAAGTTGAAAGTACAC 57.034 30.769 11.56 0.00 45.55 2.90
530 544 8.793592 ACTTTTCAAGAAAGTTGAAAGTACACT 58.206 29.630 11.56 0.00 45.55 3.55
531 545 9.278734 CTTTTCAAGAAAGTTGAAAGTACACTC 57.721 33.333 11.56 0.00 45.55 3.51
532 546 6.583912 TCAAGAAAGTTGAAAGTACACTCG 57.416 37.500 0.00 0.00 0.00 4.18
533 547 6.103997 TCAAGAAAGTTGAAAGTACACTCGT 58.896 36.000 0.00 0.00 0.00 4.18
534 548 6.592607 TCAAGAAAGTTGAAAGTACACTCGTT 59.407 34.615 0.00 0.00 0.00 3.85
535 549 7.760794 TCAAGAAAGTTGAAAGTACACTCGTTA 59.239 33.333 0.00 0.00 0.00 3.18
536 550 8.385111 CAAGAAAGTTGAAAGTACACTCGTTAA 58.615 33.333 0.00 0.00 0.00 2.01
537 551 8.483307 AGAAAGTTGAAAGTACACTCGTTAAA 57.517 30.769 0.00 0.00 0.00 1.52
538 552 8.601476 AGAAAGTTGAAAGTACACTCGTTAAAG 58.399 33.333 0.00 0.00 0.00 1.85
539 553 6.839820 AGTTGAAAGTACACTCGTTAAAGG 57.160 37.500 0.00 0.00 0.00 3.11
540 554 6.576185 AGTTGAAAGTACACTCGTTAAAGGA 58.424 36.000 0.00 0.00 0.00 3.36
541 555 6.478016 AGTTGAAAGTACACTCGTTAAAGGAC 59.522 38.462 0.00 0.00 0.00 3.85
542 556 4.977963 TGAAAGTACACTCGTTAAAGGACG 59.022 41.667 0.00 0.00 44.06 4.79
543 557 3.565905 AGTACACTCGTTAAAGGACGG 57.434 47.619 0.00 0.00 42.98 4.79
544 558 3.149196 AGTACACTCGTTAAAGGACGGA 58.851 45.455 0.00 0.00 42.98 4.69
545 559 2.719426 ACACTCGTTAAAGGACGGAG 57.281 50.000 0.00 0.00 42.98 4.63
546 560 1.271656 ACACTCGTTAAAGGACGGAGG 59.728 52.381 0.00 0.00 42.98 4.30
547 561 0.893447 ACTCGTTAAAGGACGGAGGG 59.107 55.000 0.00 0.00 42.98 4.30
548 562 1.180029 CTCGTTAAAGGACGGAGGGA 58.820 55.000 0.00 0.00 42.98 4.20
549 563 1.134560 CTCGTTAAAGGACGGAGGGAG 59.865 57.143 0.00 0.00 42.98 4.30
550 564 0.893447 CGTTAAAGGACGGAGGGAGT 59.107 55.000 0.00 0.00 39.27 3.85
551 565 2.094675 CGTTAAAGGACGGAGGGAGTA 58.905 52.381 0.00 0.00 39.27 2.59
552 566 2.493278 CGTTAAAGGACGGAGGGAGTAA 59.507 50.000 0.00 0.00 39.27 2.24
589 603 2.285083 TGCGACCCTTATTTTGGATCG 58.715 47.619 0.00 0.00 0.00 3.69
591 605 2.743838 GCGACCCTTATTTTGGATCGGA 60.744 50.000 0.00 0.00 0.00 4.55
592 606 3.131396 CGACCCTTATTTTGGATCGGAG 58.869 50.000 0.00 0.00 0.00 4.63
593 607 3.477530 GACCCTTATTTTGGATCGGAGG 58.522 50.000 0.00 0.00 0.00 4.30
868 884 4.787280 CCCCTGGCGTCTCCTCCT 62.787 72.222 0.00 0.00 35.26 3.69
869 885 3.151022 CCCTGGCGTCTCCTCCTC 61.151 72.222 0.00 0.00 35.26 3.71
870 886 3.151022 CCTGGCGTCTCCTCCTCC 61.151 72.222 0.00 0.00 35.26 4.30
871 887 2.363018 CTGGCGTCTCCTCCTCCA 60.363 66.667 0.00 0.00 35.26 3.86
1187 1207 0.960364 CATGCCGTGTAAGCACCCTT 60.960 55.000 0.00 0.00 44.40 3.95
1272 1292 1.761174 GGGTGGTGTGATCTGGTGT 59.239 57.895 0.00 0.00 0.00 4.16
1284 1304 0.106708 TCTGGTGTCAGTTGGTGAGC 59.893 55.000 0.00 0.00 41.59 4.26
1310 1330 2.958281 TTCCGGGTTAGGTTCGGGC 61.958 63.158 0.00 0.00 43.54 6.13
1407 1428 6.912591 GCGAATAGTTTGGTTTCAATCTATGG 59.087 38.462 9.22 7.03 41.42 2.74
1418 1439 4.164843 TCAATCTATGGGGTAGTTTGGC 57.835 45.455 6.21 0.00 39.20 4.52
1480 1505 2.478879 GGTTAACACAGCGCAGTTTTGT 60.479 45.455 11.47 0.63 0.00 2.83
1528 1553 5.046520 ACTTCCTCCGTCCCATAATATAAGC 60.047 44.000 0.00 0.00 0.00 3.09
1529 1554 4.684724 TCCTCCGTCCCATAATATAAGCT 58.315 43.478 0.00 0.00 0.00 3.74
1530 1555 5.091552 TCCTCCGTCCCATAATATAAGCTT 58.908 41.667 3.48 3.48 0.00 3.74
1531 1556 5.546499 TCCTCCGTCCCATAATATAAGCTTT 59.454 40.000 3.20 0.00 0.00 3.51
1587 1615 0.606673 GGTTTTGCTCTCGGAAGCCT 60.607 55.000 7.36 0.00 41.77 4.58
1600 1628 1.271379 GGAAGCCTGTCTTGCCTGTAA 60.271 52.381 0.00 0.00 37.18 2.41
1629 1657 7.394016 TGATCATTTTCCTTGTCAGTAGCTAA 58.606 34.615 0.00 0.00 0.00 3.09
1710 1739 1.617322 CTGCGTAGTCTGGGGCTATA 58.383 55.000 0.00 0.00 0.00 1.31
1746 1797 5.667539 TTTGGTTGGTTCTTGATTGTTCA 57.332 34.783 0.00 0.00 0.00 3.18
1956 2036 4.238761 TCTAACATACAGGCGCATCTAC 57.761 45.455 10.83 0.00 0.00 2.59
1957 2037 3.889538 TCTAACATACAGGCGCATCTACT 59.110 43.478 10.83 0.00 0.00 2.57
1958 2038 2.515926 ACATACAGGCGCATCTACTG 57.484 50.000 10.83 9.59 38.19 2.74
1959 2039 1.757118 ACATACAGGCGCATCTACTGT 59.243 47.619 18.13 18.13 46.30 3.55
2060 2140 2.431057 ACGGAGGGAGTATGTCATTGTC 59.569 50.000 0.00 0.00 0.00 3.18
2493 2574 7.760131 AATTTTGTCATTGGCAGAATATTCG 57.240 32.000 7.37 6.40 0.00 3.34
2538 2619 7.529158 CATATAGCTTTGAACAACATGACACA 58.471 34.615 0.00 0.00 0.00 3.72
2563 2644 5.712152 AACTCAGAAGCTACCCAAAAATG 57.288 39.130 0.00 0.00 0.00 2.32
2657 2738 3.740044 ATGTGTCGTTTGCTTTATCCG 57.260 42.857 0.00 0.00 0.00 4.18
3827 4062 8.756486 TTCACATCAATGGAAGATCATATGTT 57.244 30.769 1.90 0.00 29.06 2.71
3852 4087 6.403049 TGCTCTATTTCCTTGTATCGTTTCA 58.597 36.000 0.00 0.00 0.00 2.69
3871 4106 7.767198 TCGTTTCACTTCTCTTTTTCTCCTTAA 59.233 33.333 0.00 0.00 0.00 1.85
3872 4107 8.395633 CGTTTCACTTCTCTTTTTCTCCTTAAA 58.604 33.333 0.00 0.00 0.00 1.52
3873 4108 9.504710 GTTTCACTTCTCTTTTTCTCCTTAAAC 57.495 33.333 0.00 0.00 0.00 2.01
3874 4109 7.803279 TCACTTCTCTTTTTCTCCTTAAACC 57.197 36.000 0.00 0.00 0.00 3.27
3890 4125 5.124936 CCTTAAACCAACCTTTTATCTCCCG 59.875 44.000 0.00 0.00 0.00 5.14
4115 4350 0.391130 TACCGTGCCTCTGTTCATGC 60.391 55.000 0.00 0.00 0.00 4.06
4231 4467 8.097038 TCATACTAGCACTCAAATTATGATCCC 58.903 37.037 0.00 0.00 37.44 3.85
4374 4616 5.212532 TGCTAGTTTGCATTTTTGTGGAT 57.787 34.783 0.00 0.00 38.12 3.41
4481 4784 9.397280 CCTTCTCTCGTATCATCCTTACATATA 57.603 37.037 0.00 0.00 0.00 0.86
4536 4839 7.428020 CATCCATTGTTATTTTCATCGATGGT 58.572 34.615 24.61 11.26 40.66 3.55
4701 5004 1.472480 ACTTTGCTGTGCAGTTTTCGT 59.528 42.857 0.00 0.00 40.61 3.85
5094 5397 0.175760 GGTTAGGATGTCAGCGCTGA 59.824 55.000 35.30 35.30 37.24 4.26
5298 5602 7.616542 GGAACCTTTTGTGTAGGGGATTTATTA 59.383 37.037 0.00 0.00 37.09 0.98
5372 5676 4.994852 GGCGGATACATGCTTCAATACTTA 59.005 41.667 0.00 0.00 0.00 2.24
5547 5859 7.257722 ACTTTATCCTTGTTTTGTGTTGTCTG 58.742 34.615 0.00 0.00 0.00 3.51
5593 5906 4.645588 CCGTATATGACCTATTCTCCCTCC 59.354 50.000 0.00 0.00 0.00 4.30
5681 6099 3.603532 TCTGGAGCACAATCTCACATTC 58.396 45.455 0.00 0.00 34.84 2.67
5829 6249 4.343231 TGGAGCTTGGCATATCTTGAAAA 58.657 39.130 0.00 0.00 0.00 2.29
5836 6256 8.480501 AGCTTGGCATATCTTGAAAATTTGTAT 58.519 29.630 0.00 0.00 0.00 2.29
5837 6257 8.545420 GCTTGGCATATCTTGAAAATTTGTATG 58.455 33.333 0.00 0.00 0.00 2.39
6419 6937 0.328258 ACCTGGTTTCGGGAAGATGG 59.672 55.000 0.00 0.00 42.08 3.51
6868 7398 6.851884 CAAAAGTATGTTTGCTGTTTACACG 58.148 36.000 0.00 0.00 32.10 4.49
7091 7621 7.042335 AGGTTCTATACTTGTGACACTATTGC 58.958 38.462 7.20 0.00 0.00 3.56
7370 7900 1.137086 CTGGGAGTTCAGGTATGGACG 59.863 57.143 0.00 0.00 40.20 4.79
7386 7916 7.069578 AGGTATGGACGTCTTATCATTTACAGT 59.930 37.037 16.46 0.00 0.00 3.55
7458 7988 5.026790 ACTATAGAAGAAAGACCTGCCACT 58.973 41.667 6.78 0.00 0.00 4.00
7662 8192 1.898574 CTGGACAACACCACCAGCC 60.899 63.158 0.00 0.00 43.32 4.85
7663 8193 2.194597 GGACAACACCACCAGCCA 59.805 61.111 0.00 0.00 0.00 4.75
7664 8194 2.193536 GGACAACACCACCAGCCAC 61.194 63.158 0.00 0.00 0.00 5.01
7665 8195 1.453015 GACAACACCACCAGCCACA 60.453 57.895 0.00 0.00 0.00 4.17
7667 8197 0.823356 ACAACACCACCAGCCACATC 60.823 55.000 0.00 0.00 0.00 3.06
7752 8282 2.253513 CGGAAAGTGGTTGCGGAAT 58.746 52.632 0.00 0.00 46.32 3.01
7833 8414 3.432378 AGGATCACTATACGATGGGGTC 58.568 50.000 0.00 0.00 0.00 4.46
7924 8505 5.790593 TCACCTGAACCAGTTATCTTGTAC 58.209 41.667 0.00 0.00 0.00 2.90
8092 8674 1.176527 CCATGCACGGTGGAGAAAAT 58.823 50.000 10.60 0.00 39.12 1.82
8419 9008 7.635202 GTCTTTCACAAAAAGAGTCGTAACTTC 59.365 37.037 0.65 0.00 36.99 3.01
8733 9348 5.248640 CCTTGGCTGGTGGAATACTATATG 58.751 45.833 0.00 0.00 0.00 1.78
8805 9422 2.687700 ACATGGTTGTTGCTTTGCAA 57.312 40.000 0.00 0.00 46.80 4.08
8862 9488 1.618837 AGAGTGTAGCGAGGCTGAAAA 59.381 47.619 0.00 0.00 40.10 2.29
8874 9504 4.072131 GAGGCTGAAAATTGAGGTACACA 58.928 43.478 0.00 0.00 0.00 3.72
8889 9519 2.080286 ACACAATGTGTCGGCTCTAC 57.920 50.000 13.98 0.00 43.92 2.59
8928 9558 1.884235 ATTTATGCGAGGCTACCTGC 58.116 50.000 0.00 0.00 41.94 4.85
8998 9635 2.211250 TCCAACTACCGCTGTACTCT 57.789 50.000 0.00 0.00 0.00 3.24
9040 9677 3.507233 GCTGAACAGATTGGATTGGTTGA 59.493 43.478 5.97 0.00 0.00 3.18
9054 9697 2.016318 TGGTTGATGATGGCGATTGTC 58.984 47.619 0.00 0.00 0.00 3.18
9190 9839 1.959226 CTTACGCACGGTGGCAACT 60.959 57.895 10.60 0.00 37.61 3.16
9201 9850 0.947244 GTGGCAACTCCTTGTGACAG 59.053 55.000 0.00 0.00 35.26 3.51
9327 9979 6.701841 AGCAAATTGTACATGGTAGAGATACG 59.298 38.462 0.00 0.00 0.00 3.06
9341 9993 4.456535 AGAGATACGTGAGCTGACTACAT 58.543 43.478 0.79 0.00 0.00 2.29
9342 9994 4.513692 AGAGATACGTGAGCTGACTACATC 59.486 45.833 0.79 1.56 0.00 3.06
9382 10034 8.686334 AGTCTAAAAGAAACAAGCAAATCTTCA 58.314 29.630 0.00 0.00 31.20 3.02
9403 10056 8.097662 TCTTCAAGATCTTAAACTCTTCCTTCC 58.902 37.037 7.86 0.00 29.34 3.46
9404 10057 7.316393 TCAAGATCTTAAACTCTTCCTTCCA 57.684 36.000 7.86 0.00 29.34 3.53
9405 10058 7.390027 TCAAGATCTTAAACTCTTCCTTCCAG 58.610 38.462 7.86 0.00 29.34 3.86
9407 10060 7.560796 AGATCTTAAACTCTTCCTTCCAGAA 57.439 36.000 0.00 0.00 0.00 3.02
9408 10061 7.619965 AGATCTTAAACTCTTCCTTCCAGAAG 58.380 38.462 0.15 0.15 43.88 2.85
9410 10063 6.760291 TCTTAAACTCTTCCTTCCAGAAGAC 58.240 40.000 9.00 0.00 45.67 3.01
9444 10097 9.921637 GGAACATAACAAAAGAATCAAACCATA 57.078 29.630 0.00 0.00 0.00 2.74
9472 10125 3.345508 AAATACCAACGAGGGTTCTCC 57.654 47.619 7.99 0.00 43.89 3.71
9507 10160 4.807039 CCGCAATGCCAAGGCTGC 62.807 66.667 12.96 13.30 42.51 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.038271 CCTTGTATTTTTCCTACGAATCTGGG 59.962 42.308 0.00 0.00 0.00 4.45
69 70 8.811017 TGTATTACCCAAAACATCACAATCAAT 58.189 29.630 0.00 0.00 0.00 2.57
71 72 7.767250 TGTATTACCCAAAACATCACAATCA 57.233 32.000 0.00 0.00 0.00 2.57
81 82 8.921670 GTCATTTGTCAATGTATTACCCAAAAC 58.078 33.333 0.00 0.00 40.78 2.43
94 95 6.784176 TCCGTATCATTGTCATTTGTCAATG 58.216 36.000 18.40 18.40 45.91 2.82
114 115 2.293399 GCTTTCACCATTGAACTTCCGT 59.707 45.455 0.00 0.00 41.64 4.69
115 116 2.293122 TGCTTTCACCATTGAACTTCCG 59.707 45.455 0.00 0.00 41.64 4.30
290 304 2.832733 ACTCTTTAAAGGACGGAGGGAG 59.167 50.000 15.13 4.81 0.00 4.30
291 305 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
292 306 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
293 307 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
296 310 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
297 311 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
298 312 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
300 314 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
302 316 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
303 317 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
304 318 7.066525 CCAACAAAGTTGGAAGTACACTCTTTA 59.933 37.037 21.24 0.00 42.06 1.85
306 320 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
307 321 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
308 322 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
309 323 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
310 324 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
311 325 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
312 326 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
313 327 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
314 328 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
315 329 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
316 330 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
317 331 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
318 332 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
319 333 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
320 334 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
321 335 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
322 336 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
323 337 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
324 338 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
325 339 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
326 340 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
327 341 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
328 342 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
329 343 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
337 351 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
338 352 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
339 353 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
340 354 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
341 355 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
342 356 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
343 357 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
344 358 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
345 359 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
346 360 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
347 361 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
348 362 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
349 363 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
350 364 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
351 365 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
352 366 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
353 367 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
354 368 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
355 369 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
356 370 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
357 371 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
363 377 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
422 436 9.764363 TCAAATTAGTAGCATTAGATTCGTGAT 57.236 29.630 0.00 0.00 0.00 3.06
423 437 9.764363 ATCAAATTAGTAGCATTAGATTCGTGA 57.236 29.630 0.00 0.00 0.00 4.35
424 438 9.803130 CATCAAATTAGTAGCATTAGATTCGTG 57.197 33.333 0.00 0.00 0.00 4.35
425 439 8.993121 CCATCAAATTAGTAGCATTAGATTCGT 58.007 33.333 0.00 0.00 0.00 3.85
426 440 7.959651 GCCATCAAATTAGTAGCATTAGATTCG 59.040 37.037 0.00 0.00 0.00 3.34
427 441 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
428 442 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
429 443 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
430 444 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
497 511 9.541143 TTTCAACTTTCTTGAAAAGTCAAACTT 57.459 25.926 5.90 0.00 46.34 2.66
498 512 9.196552 CTTTCAACTTTCTTGAAAAGTCAAACT 57.803 29.630 9.01 0.00 46.34 2.66
499 513 8.978539 ACTTTCAACTTTCTTGAAAAGTCAAAC 58.021 29.630 9.01 0.00 46.34 2.93
501 515 9.620660 GTACTTTCAACTTTCTTGAAAAGTCAA 57.379 29.630 9.01 0.00 46.34 3.18
502 516 8.788806 TGTACTTTCAACTTTCTTGAAAAGTCA 58.211 29.630 9.01 6.14 46.34 3.41
503 517 9.062674 GTGTACTTTCAACTTTCTTGAAAAGTC 57.937 33.333 9.01 4.26 46.34 3.01
504 518 8.793592 AGTGTACTTTCAACTTTCTTGAAAAGT 58.206 29.630 9.01 10.58 46.34 2.66
505 519 9.278734 GAGTGTACTTTCAACTTTCTTGAAAAG 57.721 33.333 9.01 6.58 44.67 2.27
506 520 7.960738 CGAGTGTACTTTCAACTTTCTTGAAAA 59.039 33.333 9.01 0.00 44.67 2.29
507 521 7.118680 ACGAGTGTACTTTCAACTTTCTTGAAA 59.881 33.333 7.75 7.75 43.62 2.69
508 522 6.592607 ACGAGTGTACTTTCAACTTTCTTGAA 59.407 34.615 0.00 0.00 36.71 2.69
509 523 6.103997 ACGAGTGTACTTTCAACTTTCTTGA 58.896 36.000 0.00 0.00 0.00 3.02
510 524 6.345920 ACGAGTGTACTTTCAACTTTCTTG 57.654 37.500 0.00 0.00 0.00 3.02
511 525 6.980051 AACGAGTGTACTTTCAACTTTCTT 57.020 33.333 0.00 0.00 0.00 2.52
512 526 8.483307 TTTAACGAGTGTACTTTCAACTTTCT 57.517 30.769 0.00 0.00 0.00 2.52
513 527 7.849515 CCTTTAACGAGTGTACTTTCAACTTTC 59.150 37.037 0.00 0.00 0.00 2.62
514 528 7.550196 TCCTTTAACGAGTGTACTTTCAACTTT 59.450 33.333 0.00 0.00 0.00 2.66
515 529 7.010830 GTCCTTTAACGAGTGTACTTTCAACTT 59.989 37.037 0.00 0.00 0.00 2.66
516 530 6.478016 GTCCTTTAACGAGTGTACTTTCAACT 59.522 38.462 0.00 0.00 0.00 3.16
517 531 6.560983 CGTCCTTTAACGAGTGTACTTTCAAC 60.561 42.308 0.00 0.00 45.37 3.18
518 532 5.459762 CGTCCTTTAACGAGTGTACTTTCAA 59.540 40.000 0.00 0.00 45.37 2.69
519 533 4.977963 CGTCCTTTAACGAGTGTACTTTCA 59.022 41.667 0.00 0.00 45.37 2.69
520 534 4.383948 CCGTCCTTTAACGAGTGTACTTTC 59.616 45.833 0.00 0.00 45.37 2.62
521 535 4.037923 TCCGTCCTTTAACGAGTGTACTTT 59.962 41.667 0.00 0.00 45.37 2.66
522 536 3.569701 TCCGTCCTTTAACGAGTGTACTT 59.430 43.478 0.00 0.00 45.37 2.24
523 537 3.149196 TCCGTCCTTTAACGAGTGTACT 58.851 45.455 0.00 0.00 45.37 2.73
524 538 3.496155 CTCCGTCCTTTAACGAGTGTAC 58.504 50.000 0.00 0.00 45.37 2.90
525 539 2.489329 CCTCCGTCCTTTAACGAGTGTA 59.511 50.000 0.00 0.00 45.37 2.90
526 540 1.271656 CCTCCGTCCTTTAACGAGTGT 59.728 52.381 0.00 0.00 45.37 3.55
527 541 1.403780 CCCTCCGTCCTTTAACGAGTG 60.404 57.143 0.00 0.00 45.37 3.51
528 542 0.893447 CCCTCCGTCCTTTAACGAGT 59.107 55.000 0.00 0.00 45.37 4.18
529 543 1.134560 CTCCCTCCGTCCTTTAACGAG 59.865 57.143 0.00 0.00 45.37 4.18
530 544 1.180029 CTCCCTCCGTCCTTTAACGA 58.820 55.000 0.00 0.00 45.37 3.85
531 545 0.893447 ACTCCCTCCGTCCTTTAACG 59.107 55.000 0.00 0.00 42.24 3.18
532 546 3.766051 TCTTACTCCCTCCGTCCTTTAAC 59.234 47.826 0.00 0.00 0.00 2.01
533 547 4.051661 TCTTACTCCCTCCGTCCTTTAA 57.948 45.455 0.00 0.00 0.00 1.52
534 548 3.744940 TCTTACTCCCTCCGTCCTTTA 57.255 47.619 0.00 0.00 0.00 1.85
535 549 2.617840 TCTTACTCCCTCCGTCCTTT 57.382 50.000 0.00 0.00 0.00 3.11
536 550 2.245287 AGATCTTACTCCCTCCGTCCTT 59.755 50.000 0.00 0.00 0.00 3.36
537 551 1.854280 AGATCTTACTCCCTCCGTCCT 59.146 52.381 0.00 0.00 0.00 3.85
538 552 2.368311 AGATCTTACTCCCTCCGTCC 57.632 55.000 0.00 0.00 0.00 4.79
539 553 6.040616 TGAATTAAGATCTTACTCCCTCCGTC 59.959 42.308 14.85 3.62 0.00 4.79
540 554 5.897824 TGAATTAAGATCTTACTCCCTCCGT 59.102 40.000 14.85 0.00 0.00 4.69
541 555 6.406692 TGAATTAAGATCTTACTCCCTCCG 57.593 41.667 14.85 0.00 0.00 4.63
542 556 8.894731 GTTTTGAATTAAGATCTTACTCCCTCC 58.105 37.037 14.85 1.95 0.00 4.30
543 557 9.674068 AGTTTTGAATTAAGATCTTACTCCCTC 57.326 33.333 14.85 5.55 0.00 4.30
544 558 9.454859 CAGTTTTGAATTAAGATCTTACTCCCT 57.545 33.333 14.85 5.88 0.00 4.20
545 559 8.184848 GCAGTTTTGAATTAAGATCTTACTCCC 58.815 37.037 14.85 6.49 0.00 4.30
546 560 7.905493 CGCAGTTTTGAATTAAGATCTTACTCC 59.095 37.037 14.85 7.32 0.00 3.85
547 561 8.656849 TCGCAGTTTTGAATTAAGATCTTACTC 58.343 33.333 14.85 14.03 0.00 2.59
548 562 8.443937 GTCGCAGTTTTGAATTAAGATCTTACT 58.556 33.333 14.85 7.10 0.00 2.24
549 563 7.692705 GGTCGCAGTTTTGAATTAAGATCTTAC 59.307 37.037 14.85 4.79 0.00 2.34
550 564 7.148306 GGGTCGCAGTTTTGAATTAAGATCTTA 60.148 37.037 11.24 11.24 0.00 2.10
551 565 6.349363 GGGTCGCAGTTTTGAATTAAGATCTT 60.349 38.462 13.56 13.56 0.00 2.40
552 566 5.123979 GGGTCGCAGTTTTGAATTAAGATCT 59.876 40.000 0.00 0.00 0.00 2.75
589 603 7.797062 AGAAAAATCTAGTCAATACTCCCTCC 58.203 38.462 0.00 0.00 37.15 4.30
638 652 8.653338 GTCGAATTTAGTTCATTTGCACTACTA 58.347 33.333 0.00 0.00 36.60 1.82
644 658 5.599359 TCGTCGAATTTAGTTCATTTGCA 57.401 34.783 0.00 0.00 36.60 4.08
688 702 4.675510 TCAGCTTTGTTTTGCTCTTTCAG 58.324 39.130 0.00 0.00 37.44 3.02
780 795 0.185175 GGGGTGGAAGTTTCACAGGT 59.815 55.000 16.22 0.00 36.90 4.00
866 882 1.690985 GGGAAGGAGGAGGTGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
867 883 1.690985 GGGGAAGGAGGAGGTGGAG 60.691 68.421 0.00 0.00 0.00 3.86
868 884 2.182858 GAGGGGAAGGAGGAGGTGGA 62.183 65.000 0.00 0.00 0.00 4.02
869 885 1.690985 GAGGGGAAGGAGGAGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
870 886 1.690985 GGAGGGGAAGGAGGAGGTG 60.691 68.421 0.00 0.00 0.00 4.00
871 887 2.788589 GGAGGGGAAGGAGGAGGT 59.211 66.667 0.00 0.00 0.00 3.85
922 941 2.044450 TTGGAGGGGATGGGAGGG 59.956 66.667 0.00 0.00 0.00 4.30
929 948 1.230281 TGGGAAGCTTGGAGGGGAT 60.230 57.895 2.10 0.00 0.00 3.85
1272 1292 0.179020 CCAACCAGCTCACCAACTGA 60.179 55.000 0.00 0.00 35.90 3.41
1284 1304 0.322187 CCTAACCCGGAACCAACCAG 60.322 60.000 0.73 0.00 0.00 4.00
1310 1330 3.806521 CAGACCTCTCGCCAATTCATTAG 59.193 47.826 0.00 0.00 0.00 1.73
1380 1401 3.546002 TTGAAACCAAACTATTCGCCG 57.454 42.857 0.00 0.00 0.00 6.46
1407 1428 3.304458 CGAGAACAAAAGCCAAACTACCC 60.304 47.826 0.00 0.00 0.00 3.69
1418 1439 4.601019 ACAGAATTGCACGAGAACAAAAG 58.399 39.130 0.00 0.00 0.00 2.27
1480 1505 9.030452 AGTACCAAATAATAAACCATGAAAGCA 57.970 29.630 0.00 0.00 0.00 3.91
1509 1534 7.745620 AAAAAGCTTATATTATGGGACGGAG 57.254 36.000 0.00 0.00 0.00 4.63
1537 1562 1.860641 TAGCCAGCCAAGCTAGTGTA 58.139 50.000 0.00 0.00 41.83 2.90
1550 1578 2.180276 ACCAGAGTACCAGTTAGCCAG 58.820 52.381 0.00 0.00 0.00 4.85
1587 1615 6.839124 ATGATCAAAATTACAGGCAAGACA 57.161 33.333 0.00 0.00 0.00 3.41
1600 1628 8.031277 GCTACTGACAAGGAAAATGATCAAAAT 58.969 33.333 0.00 0.00 0.00 1.82
1637 1665 4.801330 AAAATAAAACCAGCCTACAGCC 57.199 40.909 0.00 0.00 45.47 4.85
1710 1739 8.201464 AGAACCAACCAAAAATTCGAAAATAGT 58.799 29.630 0.00 0.00 0.00 2.12
1746 1797 4.098501 GGCTTTCCAAAGTAATGCATAGCT 59.901 41.667 0.00 0.00 38.28 3.32
1956 2036 6.326583 TGGGACAGAGGGAGTAATAAATACAG 59.673 42.308 0.00 0.00 36.94 2.74
1957 2037 6.206787 TGGGACAGAGGGAGTAATAAATACA 58.793 40.000 0.00 0.00 36.94 2.29
1958 2038 6.742559 TGGGACAGAGGGAGTAATAAATAC 57.257 41.667 0.00 0.00 34.52 1.89
2230 2310 3.244215 TGTTTCCTCTGCACAAGGAGTAG 60.244 47.826 11.85 0.00 43.65 2.57
2231 2311 2.703536 TGTTTCCTCTGCACAAGGAGTA 59.296 45.455 11.85 4.02 43.65 2.59
2232 2312 1.490490 TGTTTCCTCTGCACAAGGAGT 59.510 47.619 11.85 0.00 43.65 3.85
2421 2502 0.865769 CCCAAGTCCGAAAACAGTCG 59.134 55.000 0.00 0.00 40.77 4.18
2493 2574 1.306568 AGAAGTGCCTCTCTCCCCC 60.307 63.158 0.00 0.00 0.00 5.40
2538 2619 6.538945 TTTTTGGGTAGCTTCTGAGTTTTT 57.461 33.333 0.00 0.00 0.00 1.94
2621 2702 7.404671 ACGACACATAGGCATATATATGACA 57.595 36.000 26.83 15.01 44.26 3.58
2657 2738 3.271250 ACACCATGTGAGCCCATTC 57.729 52.632 0.49 0.00 36.96 2.67
3827 4062 6.876789 TGAAACGATACAAGGAAATAGAGCAA 59.123 34.615 0.00 0.00 0.00 3.91
3852 4087 7.068348 GGTTGGTTTAAGGAGAAAAAGAGAAGT 59.932 37.037 0.00 0.00 0.00 3.01
3871 4106 4.376225 TTCGGGAGATAAAAGGTTGGTT 57.624 40.909 0.00 0.00 39.57 3.67
3872 4107 4.376225 TTTCGGGAGATAAAAGGTTGGT 57.624 40.909 0.00 0.00 39.57 3.67
3873 4108 5.185056 ACATTTTCGGGAGATAAAAGGTTGG 59.815 40.000 0.00 0.00 36.51 3.77
3874 4109 6.267496 ACATTTTCGGGAGATAAAAGGTTG 57.733 37.500 0.00 0.00 36.51 3.77
3890 4125 7.526608 TGCACTATAGCAACACTAACATTTTC 58.473 34.615 0.00 0.00 42.46 2.29
4231 4467 4.123497 TGAATGAACTAGATGGTCACCG 57.877 45.455 0.00 0.00 46.28 4.94
4342 4584 3.084039 TGCAAACTAGCAAGGAGAATGG 58.916 45.455 0.00 0.00 42.46 3.16
4374 4616 6.588719 ATTAGCAAGCAAAGACACCAATTA 57.411 33.333 0.00 0.00 0.00 1.40
4455 4697 6.582677 ATGTAAGGATGATACGAGAGAAGG 57.417 41.667 0.00 0.00 0.00 3.46
4536 4839 7.982761 AGATTTAAAGCAATTGCCAAATCAA 57.017 28.000 34.98 22.11 41.54 2.57
4701 5004 6.980593 AGTAACATAAGAATGCTGCAACAAA 58.019 32.000 6.36 0.00 36.50 2.83
5094 5397 6.819649 CAGGTGCAACAAATCAATCCAAATAT 59.180 34.615 3.64 0.00 39.98 1.28
5240 5544 7.116233 ACAAATTGGCATATTTTTCTCACGAAC 59.884 33.333 0.00 0.00 0.00 3.95
5298 5602 3.265221 TGCTCTGTGGAGATTGGAGAAAT 59.735 43.478 0.00 0.00 41.86 2.17
5454 5758 3.099905 CCAGACTGATGTCCTACCTTCA 58.900 50.000 3.32 0.00 43.91 3.02
5547 5859 4.171005 CACTTGCATGGTCATCATTTGTC 58.829 43.478 4.44 0.00 32.92 3.18
5593 5906 4.946157 AGGTGAAGAATGCAAATGGTAGAG 59.054 41.667 0.00 0.00 0.00 2.43
5681 6099 7.326063 CCACTTCGCATAACCTAAAAAGAAAAG 59.674 37.037 0.00 0.00 0.00 2.27
5836 6256 9.650714 TTTCCCTACATTAGCTACTCTATTACA 57.349 33.333 0.00 0.00 0.00 2.41
7091 7621 9.664332 CTCCATTCTAAGGTAGATTATGATTGG 57.336 37.037 0.00 0.00 34.22 3.16
7386 7916 6.693315 AGGTTTTTCGAAGAAAACTCATCA 57.307 33.333 19.55 0.00 45.90 3.07
7522 8052 3.500448 TCAGTGGTAACCTGAATGCAA 57.500 42.857 0.00 0.00 39.79 4.08
7523 8053 3.500448 TTCAGTGGTAACCTGAATGCA 57.500 42.857 7.39 0.00 44.00 3.96
7662 8192 3.104512 TGTTAGGAGTAGTGGGGATGTG 58.895 50.000 0.00 0.00 0.00 3.21
7663 8193 3.484953 TGTTAGGAGTAGTGGGGATGT 57.515 47.619 0.00 0.00 0.00 3.06
7664 8194 3.711704 ACATGTTAGGAGTAGTGGGGATG 59.288 47.826 0.00 0.00 0.00 3.51
7665 8195 3.967987 GACATGTTAGGAGTAGTGGGGAT 59.032 47.826 0.00 0.00 0.00 3.85
7667 8197 2.434702 GGACATGTTAGGAGTAGTGGGG 59.565 54.545 0.00 0.00 0.00 4.96
7748 8278 9.790389 CGTATAGTGATCCTAATTACTCATTCC 57.210 37.037 0.00 0.00 33.98 3.01
7752 8282 8.573885 CCAACGTATAGTGATCCTAATTACTCA 58.426 37.037 0.00 0.00 33.98 3.41
7833 8414 2.736978 TGGCTGTTATGCAACAAAACG 58.263 42.857 0.00 0.00 43.92 3.60
7924 8505 6.754209 CACCACAGAGCACTAGAAAATACTAG 59.246 42.308 0.00 0.00 43.62 2.57
8092 8674 0.837691 ATCACCAGCTCCAGTGTCCA 60.838 55.000 7.69 0.00 35.45 4.02
8419 9008 3.008330 CTGCTCCAAGTCAGGAAGATTG 58.992 50.000 0.00 0.00 37.20 2.67
8695 9310 3.054361 AGCCAAGGGGTAGTAAACTGATG 60.054 47.826 0.00 0.00 36.17 3.07
8805 9422 1.646540 CAAATGTGTCGGTGCGTGT 59.353 52.632 0.00 0.00 0.00 4.49
8874 9504 4.002906 TCAAAAGTAGAGCCGACACATT 57.997 40.909 0.00 0.00 0.00 2.71
8889 9519 8.814235 CATAAATAAGCCAAGCAAGATCAAAAG 58.186 33.333 0.00 0.00 0.00 2.27
8928 9558 3.935203 AGTGCGTCCTTTGTATTCATCTG 59.065 43.478 0.00 0.00 0.00 2.90
8998 9635 9.146984 GTTCAGCTTACTACATTGTGTAATACA 57.853 33.333 0.00 0.00 37.56 2.29
9040 9677 4.724074 AAACAATGACAATCGCCATCAT 57.276 36.364 0.00 0.00 34.52 2.45
9117 9766 4.007644 CCAGACTGCCCTCACGCA 62.008 66.667 0.00 0.00 37.19 5.24
9131 9780 5.361427 TCAACTCGAGATCTACTACTCCAG 58.639 45.833 21.68 0.00 0.00 3.86
9190 9839 0.399949 AGGTCACCCTGTCACAAGGA 60.400 55.000 0.00 0.00 40.58 3.36
9327 9979 4.921547 TGTAATCGATGTAGTCAGCTCAC 58.078 43.478 0.00 0.00 0.00 3.51
9365 10017 9.683069 TTAAGATCTTGAAGATTTGCTTGTTTC 57.317 29.630 18.47 0.00 34.53 2.78
9369 10021 9.339492 GAGTTTAAGATCTTGAAGATTTGCTTG 57.661 33.333 18.47 0.00 34.53 4.01
9370 10022 9.294614 AGAGTTTAAGATCTTGAAGATTTGCTT 57.705 29.630 18.47 10.35 34.53 3.91
9377 10029 8.097662 GGAAGGAAGAGTTTAAGATCTTGAAGA 58.902 37.037 18.47 0.00 35.93 2.87
9382 10034 7.560796 TCTGGAAGGAAGAGTTTAAGATCTT 57.439 36.000 13.56 13.56 38.46 2.40
9403 10056 1.272490 TGTTCCTACGGCTGTCTTCTG 59.728 52.381 0.00 0.00 0.00 3.02
9404 10057 1.629043 TGTTCCTACGGCTGTCTTCT 58.371 50.000 0.00 0.00 0.00 2.85
9405 10058 2.674796 ATGTTCCTACGGCTGTCTTC 57.325 50.000 0.00 0.00 0.00 2.87
9407 10060 2.829720 TGTTATGTTCCTACGGCTGTCT 59.170 45.455 0.00 0.00 0.00 3.41
9408 10061 3.241067 TGTTATGTTCCTACGGCTGTC 57.759 47.619 0.00 0.00 0.00 3.51
9409 10062 3.688694 TTGTTATGTTCCTACGGCTGT 57.311 42.857 2.42 2.42 0.00 4.40
9410 10063 4.693566 TCTTTTGTTATGTTCCTACGGCTG 59.306 41.667 0.00 0.00 0.00 4.85
9425 10078 7.287696 ACAGGTCTATGGTTTGATTCTTTTGTT 59.712 33.333 0.00 0.00 0.00 2.83
9433 10086 8.333235 TGGTATTTACAGGTCTATGGTTTGATT 58.667 33.333 0.00 0.00 0.00 2.57
9444 10097 3.197116 CCCTCGTTGGTATTTACAGGTCT 59.803 47.826 0.00 0.00 0.00 3.85
9446 10099 2.908351 ACCCTCGTTGGTATTTACAGGT 59.092 45.455 0.00 0.00 36.67 4.00
9472 10125 6.473397 TTGCGGCTTAAATTAAAACAATGG 57.527 33.333 0.00 0.00 0.00 3.16
9483 10136 1.134729 CCTTGGCATTGCGGCTTAAAT 60.135 47.619 0.00 0.00 41.89 1.40
9487 10140 4.073200 GCCTTGGCATTGCGGCTT 62.073 61.111 16.08 0.00 41.89 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.