Multiple sequence alignment - TraesCS2D01G300300

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G300300 chr2D 100.000 8930 0 0 1 8930 382452355 382443426 0.000000e+00 16491.0
1 TraesCS2D01G300300 chr2D 95.942 345 13 1 1665 2008 350750344 350750688 7.830000e-155 558.0
2 TraesCS2D01G300300 chr2D 80.791 354 47 15 4705 5044 527901694 527901348 3.200000e-64 257.0
3 TraesCS2D01G300300 chr2A 95.255 3836 141 15 446 4266 516830101 516826292 0.000000e+00 6037.0
4 TraesCS2D01G300300 chr2A 96.112 1209 38 2 7147 8355 516747518 516746319 0.000000e+00 1964.0
5 TraesCS2D01G300300 chr2A 95.152 1052 49 1 5383 6434 516825984 516824935 0.000000e+00 1659.0
6 TraesCS2D01G300300 chr2A 89.621 607 43 10 8341 8930 516745033 516744430 0.000000e+00 754.0
7 TraesCS2D01G300300 chr2A 93.013 458 22 1 1 448 516837551 516837094 0.000000e+00 660.0
8 TraesCS2D01G300300 chr2A 90.476 294 10 3 5092 5383 516826298 516826021 1.090000e-98 372.0
9 TraesCS2D01G300300 chr2A 87.539 321 37 3 5383 5700 145445358 145445038 1.420000e-97 368.0
10 TraesCS2D01G300300 chr2A 76.923 624 85 28 4517 5091 105484275 105484888 5.240000e-77 300.0
11 TraesCS2D01G300300 chr2A 96.000 150 5 1 7005 7154 516766946 516766798 8.960000e-60 243.0
12 TraesCS2D01G300300 chr2B 92.465 2097 116 15 6751 8815 453232540 453230454 0.000000e+00 2959.0
13 TraesCS2D01G300300 chr2B 95.389 976 38 3 2655 3630 453238276 453237308 0.000000e+00 1546.0
14 TraesCS2D01G300300 chr2B 86.059 954 81 30 655 1564 453263319 453262374 0.000000e+00 977.0
15 TraesCS2D01G300300 chr2B 92.918 466 30 2 3803 4266 453237001 453236537 0.000000e+00 675.0
16 TraesCS2D01G300300 chr2B 89.981 529 22 16 2143 2657 453259928 453259417 0.000000e+00 654.0
17 TraesCS2D01G300300 chr2B 86.354 469 40 7 5090 5548 453236545 453236091 2.900000e-134 490.0
18 TraesCS2D01G300300 chr2B 77.544 904 97 49 4258 5091 23060662 23059795 1.770000e-121 448.0
19 TraesCS2D01G300300 chr2B 81.844 358 49 12 4739 5087 602100502 602100152 4.080000e-73 287.0
20 TraesCS2D01G300300 chr2B 94.798 173 8 1 3629 3800 453237215 453237043 1.480000e-67 268.0
21 TraesCS2D01G300300 chr2B 88.816 152 13 4 1984 2132 453260154 453260004 5.510000e-42 183.0
22 TraesCS2D01G300300 chr2B 91.870 123 9 1 8809 8930 453228579 453228457 4.290000e-38 171.0
23 TraesCS2D01G300300 chr2B 93.000 100 4 1 5744 5840 129710572 129710473 9.350000e-30 143.0
24 TraesCS2D01G300300 chr3D 83.975 1273 165 20 7686 8928 318509653 318510916 0.000000e+00 1184.0
25 TraesCS2D01G300300 chr3D 84.381 1050 130 19 5969 6990 124510585 124511628 0.000000e+00 1000.0
26 TraesCS2D01G300300 chr3D 84.211 779 87 20 3033 3799 318508253 318509007 0.000000e+00 725.0
27 TraesCS2D01G300300 chr3D 88.147 599 61 3 5970 6559 182651082 182650485 0.000000e+00 704.0
28 TraesCS2D01G300300 chr3D 82.055 691 99 16 2360 3030 318507344 318508029 4.680000e-157 566.0
29 TraesCS2D01G300300 chr3D 82.692 416 44 19 4277 4671 390660413 390660821 2.390000e-90 344.0
30 TraesCS2D01G300300 chr3D 82.126 414 45 13 4278 4665 92353824 92353414 2.400000e-85 327.0
31 TraesCS2D01G300300 chr3D 76.489 655 109 29 4413 5036 110218938 110219578 1.870000e-81 315.0
32 TraesCS2D01G300300 chr3D 85.878 262 29 3 7399 7659 318509429 318509683 1.140000e-68 272.0
33 TraesCS2D01G300300 chr3D 90.909 66 5 1 5319 5383 340909319 340909254 4.440000e-13 87.9
34 TraesCS2D01G300300 chr3B 83.950 1271 166 22 7686 8928 401282539 401281279 0.000000e+00 1182.0
35 TraesCS2D01G300300 chr3B 82.300 774 86 24 3033 3799 401283906 401283177 2.740000e-174 623.0
36 TraesCS2D01G300300 chr3B 82.803 692 95 17 2360 3032 401284812 401284126 1.660000e-166 597.0
37 TraesCS2D01G300300 chr3B 87.850 321 35 4 5383 5700 424127678 424127997 3.040000e-99 374.0
38 TraesCS2D01G300300 chr3B 87.539 321 37 3 5383 5700 588667911 588667591 1.420000e-97 368.0
39 TraesCS2D01G300300 chr3B 77.554 646 103 26 4413 5044 679211367 679210750 1.430000e-92 351.0
40 TraesCS2D01G300300 chr3B 78.856 577 62 26 4285 4837 77417081 77417621 1.440000e-87 335.0
41 TraesCS2D01G300300 chr3B 84.667 300 21 10 4257 4535 308718607 308718902 8.830000e-70 276.0
42 TraesCS2D01G300300 chr3B 87.892 223 25 1 7459 7681 401282709 401282489 2.470000e-65 261.0
43 TraesCS2D01G300300 chr3B 94.000 100 3 1 5744 5840 779594339 779594240 2.010000e-31 148.0
44 TraesCS2D01G300300 chr3B 93.000 100 4 1 5744 5840 164256080 164255981 9.350000e-30 143.0
45 TraesCS2D01G300300 chr4D 84.036 1209 138 20 5987 7153 37039153 37040348 0.000000e+00 1112.0
46 TraesCS2D01G300300 chr4D 85.927 1009 104 13 5969 6943 31823067 31824071 0.000000e+00 1042.0
47 TraesCS2D01G300300 chr4D 82.054 886 97 30 6122 6988 291745154 291744312 0.000000e+00 699.0
48 TraesCS2D01G300300 chr4D 88.912 487 52 2 5969 6454 303078350 303078835 4.610000e-167 599.0
49 TraesCS2D01G300300 chr4D 87.539 321 37 3 5383 5700 437244442 437244762 1.420000e-97 368.0
50 TraesCS2D01G300300 chr4D 81.934 393 40 14 4262 4625 430788337 430787947 4.050000e-78 303.0
51 TraesCS2D01G300300 chr4D 75.857 642 98 33 4468 5094 372460120 372460719 3.180000e-69 274.0
52 TraesCS2D01G300300 chr4D 88.690 168 18 1 6986 7153 210455520 210455686 4.230000e-48 204.0
53 TraesCS2D01G300300 chr4D 85.366 164 23 1 6988 7151 108869120 108868958 1.540000e-37 169.0
54 TraesCS2D01G300300 chr4D 86.232 138 19 0 6995 7132 234408077 234408214 5.590000e-32 150.0
55 TraesCS2D01G300300 chr1A 85.196 1047 127 13 5969 6990 160608868 160609911 0.000000e+00 1050.0
56 TraesCS2D01G300300 chr1A 78.580 845 95 37 4262 5044 32536003 32536823 6.270000e-131 479.0
57 TraesCS2D01G300300 chr1A 76.196 857 130 47 4262 5092 562448338 562447530 1.410000e-102 385.0
58 TraesCS2D01G300300 chr1A 87.850 321 36 3 5383 5700 464808801 464808481 3.040000e-99 374.0
59 TraesCS2D01G300300 chr1A 86.072 359 33 8 4260 4614 574234456 574234111 3.940000e-98 370.0
60 TraesCS2D01G300300 chr1A 87.539 321 37 3 5383 5700 383407015 383407335 1.420000e-97 368.0
61 TraesCS2D01G300300 chr1A 85.034 294 22 9 4262 4535 267268971 267268680 6.830000e-71 279.0
62 TraesCS2D01G300300 chr1A 76.439 556 99 26 4508 5044 580561155 580560613 1.140000e-68 272.0
63 TraesCS2D01G300300 chr1A 84.068 295 26 7 4260 4535 549139235 549138943 1.910000e-66 265.0
64 TraesCS2D01G300300 chr1A 84.896 192 21 3 7193 7381 557481693 557481507 4.260000e-43 187.0
65 TraesCS2D01G300300 chr1A 87.970 133 16 0 5838 5970 554061520 554061652 3.340000e-34 158.0
66 TraesCS2D01G300300 chr1A 87.356 87 11 0 6992 7078 432976627 432976541 5.700000e-17 100.0
67 TraesCS2D01G300300 chr3A 82.902 1158 161 21 7686 8815 408027265 408026117 0.000000e+00 1007.0
68 TraesCS2D01G300300 chr3A 83.676 778 92 17 3033 3799 408028625 408027872 0.000000e+00 701.0
69 TraesCS2D01G300300 chr3A 95.702 349 13 2 1665 2012 308688879 308688532 2.180000e-155 560.0
70 TraesCS2D01G300300 chr3A 95.415 349 14 2 1665 2012 369399440 369399093 1.010000e-153 555.0
71 TraesCS2D01G300300 chr3A 77.858 831 117 36 4262 5044 638337477 638338288 3.800000e-123 453.0
72 TraesCS2D01G300300 chr3A 82.512 406 67 4 2630 3032 408029254 408028850 3.970000e-93 353.0
73 TraesCS2D01G300300 chr3A 77.996 559 74 28 4503 5044 550541263 550540737 1.130000e-78 305.0
74 TraesCS2D01G300300 chr3A 87.444 223 26 1 7459 7681 408027435 408027215 1.150000e-63 255.0
75 TraesCS2D01G300300 chr3A 83.142 261 40 3 8670 8928 408026115 408025857 1.500000e-57 235.0
76 TraesCS2D01G300300 chr3A 84.810 237 30 3 2360 2593 408031459 408031226 5.390000e-57 233.0
77 TraesCS2D01G300300 chr3A 87.500 80 4 3 5302 5375 106426684 106426605 4.440000e-13 87.9
78 TraesCS2D01G300300 chr5B 85.356 956 127 12 5969 6915 369125796 369126747 0.000000e+00 977.0
79 TraesCS2D01G300300 chr5B 77.945 866 117 37 4260 5089 286696765 286697592 2.920000e-129 473.0
80 TraesCS2D01G300300 chr5B 78.760 645 73 36 4260 4864 610091178 610091798 3.040000e-99 374.0
81 TraesCS2D01G300300 chr5B 81.136 493 61 18 6685 7153 256040954 256041438 5.090000e-97 366.0
82 TraesCS2D01G300300 chr5B 79.245 583 76 26 4277 4831 529945040 529945605 1.830000e-96 364.0
83 TraesCS2D01G300300 chr5B 75.162 616 90 34 4465 5038 529945285 529945879 1.940000e-56 231.0
84 TraesCS2D01G300300 chr5B 93.000 100 4 1 5744 5840 10091567 10091468 9.350000e-30 143.0
85 TraesCS2D01G300300 chr6D 85.205 953 113 15 5969 6915 105577677 105576747 0.000000e+00 953.0
86 TraesCS2D01G300300 chr6D 78.781 886 107 40 4262 5093 71020766 71021624 3.700000e-143 520.0
87 TraesCS2D01G300300 chr6D 95.745 141 5 1 5838 5978 431846490 431846629 9.020000e-55 226.0
88 TraesCS2D01G300300 chr6D 87.565 193 23 1 4853 5044 100753380 100753188 1.170000e-53 222.0
89 TraesCS2D01G300300 chr6D 89.286 140 15 0 7011 7150 249450972 249451111 9.210000e-40 176.0
90 TraesCS2D01G300300 chr6D 86.111 144 11 7 5700 5840 431846257 431846394 7.220000e-31 147.0
91 TraesCS2D01G300300 chr6D 73.377 462 87 21 4599 5044 46361074 46360633 1.210000e-28 139.0
92 TraesCS2D01G300300 chr6D 83.125 160 19 2 6994 7153 126866965 126866814 1.210000e-28 139.0
93 TraesCS2D01G300300 chr6B 81.101 1217 182 28 5969 7153 9310087 9308887 0.000000e+00 929.0
94 TraesCS2D01G300300 chr6B 80.727 825 74 36 4273 5038 85386406 85385608 1.680000e-156 564.0
95 TraesCS2D01G300300 chr6B 80.568 669 68 27 4248 4875 207835238 207834591 8.170000e-125 459.0
96 TraesCS2D01G300300 chr6B 78.287 654 60 30 4262 4875 224900501 224901112 6.640000e-91 346.0
97 TraesCS2D01G300300 chr6B 76.515 660 94 32 4465 5092 583573249 583573879 4.050000e-78 303.0
98 TraesCS2D01G300300 chr6B 95.035 141 6 1 5838 5978 651987505 651987644 4.200000e-53 220.0
99 TraesCS2D01G300300 chr6B 94.000 100 3 1 5744 5840 686467568 686467667 2.010000e-31 148.0
100 TraesCS2D01G300300 chr6B 93.617 94 3 1 5750 5840 66895123 66895030 4.350000e-28 137.0
101 TraesCS2D01G300300 chr4A 82.819 1036 131 24 5969 6987 210990831 210991836 0.000000e+00 883.0
102 TraesCS2D01G300300 chr4A 77.503 889 108 40 4285 5093 504172214 504171338 4.920000e-122 449.0
103 TraesCS2D01G300300 chr4A 76.804 901 85 53 4262 5093 274943215 274944060 8.400000e-105 392.0
104 TraesCS2D01G300300 chr4A 86.310 168 23 0 6986 7153 300462128 300461961 5.510000e-42 183.0
105 TraesCS2D01G300300 chr5D 86.386 808 103 6 5970 6773 319118646 319119450 0.000000e+00 876.0
106 TraesCS2D01G300300 chr5D 82.945 686 79 18 6331 6990 296863980 296864653 1.290000e-162 584.0
107 TraesCS2D01G300300 chr5D 82.398 659 104 10 6010 6664 75990884 75991534 1.680000e-156 564.0
108 TraesCS2D01G300300 chr5D 94.693 358 17 2 1665 2021 267759644 267759288 1.010000e-153 555.0
109 TraesCS2D01G300300 chr5D 76.958 664 93 32 4465 5084 18178591 18177944 3.110000e-84 324.0
110 TraesCS2D01G300300 chr5D 88.953 172 13 2 6988 7153 242578435 242578264 3.270000e-49 207.0
111 TraesCS2D01G300300 chr5D 87.952 166 20 0 6988 7153 334944491 334944326 7.070000e-46 196.0
112 TraesCS2D01G300300 chr1D 86.968 775 91 8 5969 6736 236267988 236267217 0.000000e+00 863.0
113 TraesCS2D01G300300 chr1D 78.620 884 109 38 4262 5092 24936902 24937758 6.180000e-141 512.0
114 TraesCS2D01G300300 chr1D 77.740 876 115 39 4277 5098 459875210 459876059 1.760000e-126 464.0
115 TraesCS2D01G300300 chr1D 87.349 166 21 0 6988 7153 268961928 268961763 3.290000e-44 191.0
116 TraesCS2D01G300300 chr7D 83.117 924 59 42 4262 5095 588792257 588793173 0.000000e+00 752.0
117 TraesCS2D01G300300 chr7D 95.415 349 14 2 1665 2012 263324507 263324854 1.010000e-153 555.0
118 TraesCS2D01G300300 chr7D 95.415 349 14 2 1665 2012 511569266 511568919 1.010000e-153 555.0
119 TraesCS2D01G300300 chr7D 78.657 923 102 52 4262 5098 582084165 582085078 7.940000e-145 525.0
120 TraesCS2D01G300300 chr7D 80.541 370 38 15 4262 4610 19549577 19549933 4.140000e-63 254.0
121 TraesCS2D01G300300 chr7D 89.441 161 17 0 6993 7153 264377996 264377836 4.230000e-48 204.0
122 TraesCS2D01G300300 chr7D 88.889 162 16 1 6992 7153 390685537 390685696 1.970000e-46 198.0
123 TraesCS2D01G300300 chr7D 87.943 141 16 1 5838 5978 104566985 104566846 1.990000e-36 165.0
124 TraesCS2D01G300300 chr5A 96.232 345 12 1 1665 2008 366235158 366234814 1.680000e-156 564.0
125 TraesCS2D01G300300 chr5A 89.535 172 12 2 6988 7153 309946039 309946210 7.020000e-51 213.0
126 TraesCS2D01G300300 chr6A 95.415 349 14 2 1665 2012 410901852 410901505 1.010000e-153 555.0
127 TraesCS2D01G300300 chr6A 77.378 862 108 47 4262 5093 26484970 26485774 1.780000e-116 431.0
128 TraesCS2D01G300300 chr6A 87.500 320 37 3 5383 5699 418920762 418920443 5.090000e-97 366.0
129 TraesCS2D01G300300 chr6A 88.344 163 19 0 6992 7154 294645054 294645216 7.070000e-46 196.0
130 TraesCS2D01G300300 chr6A 87.349 166 16 1 6993 7153 349516198 349516033 1.530000e-42 185.0
131 TraesCS2D01G300300 chr6A 85.625 160 23 0 6994 7153 152066775 152066934 1.540000e-37 169.0
132 TraesCS2D01G300300 chr6A 84.058 138 22 0 6999 7136 479318457 479318320 5.620000e-27 134.0
133 TraesCS2D01G300300 chr6A 83.453 139 23 0 7016 7154 479339679 479339541 7.280000e-26 130.0
134 TraesCS2D01G300300 chr4B 79.412 850 81 45 4262 5044 468249106 468248284 1.720000e-141 514.0
135 TraesCS2D01G300300 chr4B 78.084 908 108 48 4262 5093 274382680 274383572 2.900000e-134 490.0
136 TraesCS2D01G300300 chr4B 83.485 551 62 14 6463 6996 472396040 472395502 3.750000e-133 486.0
137 TraesCS2D01G300300 chr4B 75.938 640 89 35 4480 5092 87824629 87825230 1.480000e-67 268.0
138 TraesCS2D01G300300 chr4B 78.919 370 48 12 4742 5091 454511193 454510834 3.240000e-54 224.0
139 TraesCS2D01G300300 chr4B 88.095 168 19 1 6986 7153 253687570 253687736 1.970000e-46 198.0
140 TraesCS2D01G300300 chr1B 78.327 849 96 41 4277 5076 58874538 58873729 1.360000e-127 468.0
141 TraesCS2D01G300300 chr1B 85.586 222 22 4 4860 5076 58933991 58933775 3.240000e-54 224.0
142 TraesCS2D01G300300 chr1B 86.861 137 17 1 5838 5974 636838454 636838589 1.550000e-32 152.0
143 TraesCS2D01G300300 chr7B 77.083 912 115 45 4262 5092 700887322 700888220 2.960000e-119 440.0
144 TraesCS2D01G300300 chr7B 77.661 573 80 25 4493 5044 703696555 703697100 1.130000e-78 305.0
145 TraesCS2D01G300300 chr7B 87.654 162 20 0 6992 7153 6751449 6751610 1.180000e-43 189.0
146 TraesCS2D01G300300 chr7B 88.148 135 15 1 5844 5978 62687718 62687585 9.280000e-35 159.0
147 TraesCS2D01G300300 chr7A 87.812 320 33 5 5383 5699 559395564 559395248 3.940000e-98 370.0
148 TraesCS2D01G300300 chr7A 88.652 141 15 1 5838 5978 108809155 108809016 4.290000e-38 171.0
149 TraesCS2D01G300300 chrUn 76.215 576 92 30 4491 5038 100251828 100252386 6.880000e-66 263.0
150 TraesCS2D01G300300 chrUn 95.035 141 6 1 5838 5978 74596251 74596390 4.200000e-53 220.0
151 TraesCS2D01G300300 chrUn 85.915 142 11 7 5702 5840 74596037 74596172 9.350000e-30 143.0
152 TraesCS2D01G300300 chrUn 79.518 166 29 3 4933 5094 108824198 108824362 7.330000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G300300 chr2D 382443426 382452355 8929 True 16491.000000 16491 100.000000 1 8930 1 chr2D.!!$R1 8929
1 TraesCS2D01G300300 chr2A 516824935 516830101 5166 True 2689.333333 6037 93.627667 446 6434 3 chr2A.!!$R5 5988
2 TraesCS2D01G300300 chr2A 516744430 516747518 3088 True 1359.000000 1964 92.866500 7147 8930 2 chr2A.!!$R4 1783
3 TraesCS2D01G300300 chr2A 105484275 105484888 613 False 300.000000 300 76.923000 4517 5091 1 chr2A.!!$F1 574
4 TraesCS2D01G300300 chr2B 453228457 453238276 9819 True 1018.166667 2959 92.299000 2655 8930 6 chr2B.!!$R4 6275
5 TraesCS2D01G300300 chr2B 453259417 453263319 3902 True 604.666667 977 88.285333 655 2657 3 chr2B.!!$R5 2002
6 TraesCS2D01G300300 chr2B 23059795 23060662 867 True 448.000000 448 77.544000 4258 5091 1 chr2B.!!$R1 833
7 TraesCS2D01G300300 chr3D 124510585 124511628 1043 False 1000.000000 1000 84.381000 5969 6990 1 chr3D.!!$F2 1021
8 TraesCS2D01G300300 chr3D 182650485 182651082 597 True 704.000000 704 88.147000 5970 6559 1 chr3D.!!$R2 589
9 TraesCS2D01G300300 chr3D 318507344 318510916 3572 False 686.750000 1184 84.029750 2360 8928 4 chr3D.!!$F4 6568
10 TraesCS2D01G300300 chr3D 110218938 110219578 640 False 315.000000 315 76.489000 4413 5036 1 chr3D.!!$F1 623
11 TraesCS2D01G300300 chr3B 401281279 401284812 3533 True 665.750000 1182 84.236250 2360 8928 4 chr3B.!!$R5 6568
12 TraesCS2D01G300300 chr3B 679210750 679211367 617 True 351.000000 351 77.554000 4413 5044 1 chr3B.!!$R3 631
13 TraesCS2D01G300300 chr3B 77417081 77417621 540 False 335.000000 335 78.856000 4285 4837 1 chr3B.!!$F1 552
14 TraesCS2D01G300300 chr4D 37039153 37040348 1195 False 1112.000000 1112 84.036000 5987 7153 1 chr4D.!!$F2 1166
15 TraesCS2D01G300300 chr4D 31823067 31824071 1004 False 1042.000000 1042 85.927000 5969 6943 1 chr4D.!!$F1 974
16 TraesCS2D01G300300 chr4D 291744312 291745154 842 True 699.000000 699 82.054000 6122 6988 1 chr4D.!!$R2 866
17 TraesCS2D01G300300 chr4D 372460120 372460719 599 False 274.000000 274 75.857000 4468 5094 1 chr4D.!!$F6 626
18 TraesCS2D01G300300 chr1A 160608868 160609911 1043 False 1050.000000 1050 85.196000 5969 6990 1 chr1A.!!$F2 1021
19 TraesCS2D01G300300 chr1A 32536003 32536823 820 False 479.000000 479 78.580000 4262 5044 1 chr1A.!!$F1 782
20 TraesCS2D01G300300 chr1A 562447530 562448338 808 True 385.000000 385 76.196000 4262 5092 1 chr1A.!!$R6 830
21 TraesCS2D01G300300 chr1A 580560613 580561155 542 True 272.000000 272 76.439000 4508 5044 1 chr1A.!!$R8 536
22 TraesCS2D01G300300 chr3A 408025857 408031459 5602 True 464.000000 1007 84.081000 2360 8928 6 chr3A.!!$R5 6568
23 TraesCS2D01G300300 chr3A 638337477 638338288 811 False 453.000000 453 77.858000 4262 5044 1 chr3A.!!$F1 782
24 TraesCS2D01G300300 chr3A 550540737 550541263 526 True 305.000000 305 77.996000 4503 5044 1 chr3A.!!$R4 541
25 TraesCS2D01G300300 chr5B 369125796 369126747 951 False 977.000000 977 85.356000 5969 6915 1 chr5B.!!$F3 946
26 TraesCS2D01G300300 chr5B 286696765 286697592 827 False 473.000000 473 77.945000 4260 5089 1 chr5B.!!$F2 829
27 TraesCS2D01G300300 chr5B 610091178 610091798 620 False 374.000000 374 78.760000 4260 4864 1 chr5B.!!$F4 604
28 TraesCS2D01G300300 chr5B 529945040 529945879 839 False 297.500000 364 77.203500 4277 5038 2 chr5B.!!$F5 761
29 TraesCS2D01G300300 chr6D 105576747 105577677 930 True 953.000000 953 85.205000 5969 6915 1 chr6D.!!$R3 946
30 TraesCS2D01G300300 chr6D 71020766 71021624 858 False 520.000000 520 78.781000 4262 5093 1 chr6D.!!$F1 831
31 TraesCS2D01G300300 chr6B 9308887 9310087 1200 True 929.000000 929 81.101000 5969 7153 1 chr6B.!!$R1 1184
32 TraesCS2D01G300300 chr6B 85385608 85386406 798 True 564.000000 564 80.727000 4273 5038 1 chr6B.!!$R3 765
33 TraesCS2D01G300300 chr6B 207834591 207835238 647 True 459.000000 459 80.568000 4248 4875 1 chr6B.!!$R4 627
34 TraesCS2D01G300300 chr6B 224900501 224901112 611 False 346.000000 346 78.287000 4262 4875 1 chr6B.!!$F1 613
35 TraesCS2D01G300300 chr6B 583573249 583573879 630 False 303.000000 303 76.515000 4465 5092 1 chr6B.!!$F2 627
36 TraesCS2D01G300300 chr4A 210990831 210991836 1005 False 883.000000 883 82.819000 5969 6987 1 chr4A.!!$F1 1018
37 TraesCS2D01G300300 chr4A 504171338 504172214 876 True 449.000000 449 77.503000 4285 5093 1 chr4A.!!$R2 808
38 TraesCS2D01G300300 chr4A 274943215 274944060 845 False 392.000000 392 76.804000 4262 5093 1 chr4A.!!$F2 831
39 TraesCS2D01G300300 chr5D 319118646 319119450 804 False 876.000000 876 86.386000 5970 6773 1 chr5D.!!$F3 803
40 TraesCS2D01G300300 chr5D 296863980 296864653 673 False 584.000000 584 82.945000 6331 6990 1 chr5D.!!$F2 659
41 TraesCS2D01G300300 chr5D 75990884 75991534 650 False 564.000000 564 82.398000 6010 6664 1 chr5D.!!$F1 654
42 TraesCS2D01G300300 chr5D 18177944 18178591 647 True 324.000000 324 76.958000 4465 5084 1 chr5D.!!$R1 619
43 TraesCS2D01G300300 chr1D 236267217 236267988 771 True 863.000000 863 86.968000 5969 6736 1 chr1D.!!$R1 767
44 TraesCS2D01G300300 chr1D 24936902 24937758 856 False 512.000000 512 78.620000 4262 5092 1 chr1D.!!$F1 830
45 TraesCS2D01G300300 chr1D 459875210 459876059 849 False 464.000000 464 77.740000 4277 5098 1 chr1D.!!$F2 821
46 TraesCS2D01G300300 chr7D 588792257 588793173 916 False 752.000000 752 83.117000 4262 5095 1 chr7D.!!$F5 833
47 TraesCS2D01G300300 chr7D 582084165 582085078 913 False 525.000000 525 78.657000 4262 5098 1 chr7D.!!$F4 836
48 TraesCS2D01G300300 chr6A 26484970 26485774 804 False 431.000000 431 77.378000 4262 5093 1 chr6A.!!$F1 831
49 TraesCS2D01G300300 chr4B 468248284 468249106 822 True 514.000000 514 79.412000 4262 5044 1 chr4B.!!$R2 782
50 TraesCS2D01G300300 chr4B 274382680 274383572 892 False 490.000000 490 78.084000 4262 5093 1 chr4B.!!$F3 831
51 TraesCS2D01G300300 chr4B 472395502 472396040 538 True 486.000000 486 83.485000 6463 6996 1 chr4B.!!$R3 533
52 TraesCS2D01G300300 chr4B 87824629 87825230 601 False 268.000000 268 75.938000 4480 5092 1 chr4B.!!$F1 612
53 TraesCS2D01G300300 chr1B 58873729 58874538 809 True 468.000000 468 78.327000 4277 5076 1 chr1B.!!$R1 799
54 TraesCS2D01G300300 chr7B 700887322 700888220 898 False 440.000000 440 77.083000 4262 5092 1 chr7B.!!$F2 830
55 TraesCS2D01G300300 chr7B 703696555 703697100 545 False 305.000000 305 77.661000 4493 5044 1 chr7B.!!$F3 551
56 TraesCS2D01G300300 chrUn 100251828 100252386 558 False 263.000000 263 76.215000 4491 5038 1 chrUn.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.043940 AGATCCAGGAGGCCAGACTT 59.956 55.000 5.01 0.00 33.74 3.01 F
1719 3926 0.036388 TCGTCTGAGATGGTTTGGGC 60.036 55.000 1.24 0.00 0.00 5.36 F
3391 7850 0.544697 GCCTGGGAATCCGGTTTCTA 59.455 55.000 21.56 12.07 37.74 2.10 F
3392 7851 1.064979 GCCTGGGAATCCGGTTTCTAA 60.065 52.381 21.56 11.26 37.74 2.10 F
5077 10668 1.059913 AGGCTAGGTCCATACATGCC 58.940 55.000 0.00 0.00 37.17 4.40 F
5866 14214 0.517946 CGAACCAGTACGAGACGACG 60.518 60.000 0.00 0.00 39.31 5.12 F
6346 14725 0.536006 GCTGACCCTTTGTGCTGTCT 60.536 55.000 0.00 0.00 0.00 3.41 F
6461 14849 2.093128 CGTTAGGACTTTGTAGGGCCAT 60.093 50.000 6.18 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 3935 0.529555 GGAGCTTCTAGAGGCTTGCG 60.530 60.000 27.95 0.00 44.18 4.85 R
3549 8008 0.610509 TATTGCAACCCCGCACATGT 60.611 50.000 0.00 0.00 42.87 3.21 R
5002 10568 0.031857 TTGTTGTTTGGCAGCGATGG 59.968 50.000 1.46 0.00 0.00 3.51 R
5095 10686 0.886563 GTGCAGTACTGTACGGGACT 59.113 55.000 26.40 14.27 40.76 3.85 R
6457 14845 0.029834 GCGGAATGTCATGTGATGGC 59.970 55.000 0.00 0.00 34.88 4.40 R
7137 15597 0.708209 TGCCAGGACCTCTACCAGTA 59.292 55.000 0.00 0.00 0.00 2.74 R
7357 15823 1.069935 GGCTCTTCGGGGATGTAGC 59.930 63.158 0.00 0.00 0.00 3.58 R
7942 16409 1.071471 ACCCAAGAGTTCCAGCACG 59.929 57.895 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.509336 CGACAGTCGTGCCATCCC 60.509 66.667 15.21 0.00 34.72 3.85
19 20 2.662596 GACAGTCGTGCCATCCCA 59.337 61.111 0.00 0.00 0.00 4.37
20 21 1.221840 GACAGTCGTGCCATCCCAT 59.778 57.895 0.00 0.00 0.00 4.00
21 22 0.392998 GACAGTCGTGCCATCCCATT 60.393 55.000 0.00 0.00 0.00 3.16
22 23 0.677731 ACAGTCGTGCCATCCCATTG 60.678 55.000 0.00 0.00 0.00 2.82
23 24 1.750399 AGTCGTGCCATCCCATTGC 60.750 57.895 0.00 0.00 0.00 3.56
24 25 2.440065 TCGTGCCATCCCATTGCC 60.440 61.111 0.00 0.00 0.00 4.52
25 26 3.891400 CGTGCCATCCCATTGCCG 61.891 66.667 0.00 0.00 0.00 5.69
26 27 2.755469 GTGCCATCCCATTGCCGT 60.755 61.111 0.00 0.00 0.00 5.68
27 28 2.440065 TGCCATCCCATTGCCGTC 60.440 61.111 0.00 0.00 0.00 4.79
28 29 3.219198 GCCATCCCATTGCCGTCC 61.219 66.667 0.00 0.00 0.00 4.79
29 30 2.275089 CCATCCCATTGCCGTCCA 59.725 61.111 0.00 0.00 0.00 4.02
30 31 1.825191 CCATCCCATTGCCGTCCAG 60.825 63.158 0.00 0.00 0.00 3.86
31 32 1.825191 CATCCCATTGCCGTCCAGG 60.825 63.158 0.00 0.00 44.97 4.45
32 33 2.000701 ATCCCATTGCCGTCCAGGA 61.001 57.895 0.00 0.00 45.00 3.86
33 34 1.987807 ATCCCATTGCCGTCCAGGAG 61.988 60.000 0.00 0.00 45.00 3.69
34 35 2.124570 CCATTGCCGTCCAGGAGG 60.125 66.667 1.72 1.72 45.00 4.30
56 57 3.934962 GAGCCGCCCTCCCAGATC 61.935 72.222 0.00 0.00 34.35 2.75
59 60 3.554342 CCGCCCTCCCAGATCCAG 61.554 72.222 0.00 0.00 0.00 3.86
60 61 3.554342 CGCCCTCCCAGATCCAGG 61.554 72.222 0.00 0.00 0.00 4.45
61 62 2.040464 GCCCTCCCAGATCCAGGA 60.040 66.667 3.43 0.00 0.00 3.86
64 65 3.560989 CTCCCAGATCCAGGAGGC 58.439 66.667 17.37 0.00 45.08 4.70
65 66 2.040464 TCCCAGATCCAGGAGGCC 60.040 66.667 0.00 0.00 33.74 5.19
66 67 2.367377 CCCAGATCCAGGAGGCCA 60.367 66.667 5.01 0.00 33.74 5.36
67 68 2.450320 CCCAGATCCAGGAGGCCAG 61.450 68.421 5.01 0.00 33.74 4.85
68 69 1.383664 CCAGATCCAGGAGGCCAGA 60.384 63.158 5.01 0.00 33.74 3.86
69 70 1.694133 CCAGATCCAGGAGGCCAGAC 61.694 65.000 5.01 0.00 33.74 3.51
70 71 0.690411 CAGATCCAGGAGGCCAGACT 60.690 60.000 5.01 0.00 33.74 3.24
71 72 0.043940 AGATCCAGGAGGCCAGACTT 59.956 55.000 5.01 0.00 33.74 3.01
72 73 0.467804 GATCCAGGAGGCCAGACTTC 59.532 60.000 5.01 0.00 33.74 3.01
73 74 0.252881 ATCCAGGAGGCCAGACTTCA 60.253 55.000 5.01 0.00 33.74 3.02
74 75 1.194781 TCCAGGAGGCCAGACTTCAC 61.195 60.000 5.01 0.00 33.74 3.18
75 76 1.197430 CCAGGAGGCCAGACTTCACT 61.197 60.000 5.01 0.00 0.00 3.41
76 77 0.248843 CAGGAGGCCAGACTTCACTC 59.751 60.000 5.01 0.00 0.00 3.51
77 78 1.216710 GGAGGCCAGACTTCACTCG 59.783 63.158 5.01 0.00 0.00 4.18
78 79 1.216710 GAGGCCAGACTTCACTCGG 59.783 63.158 5.01 0.00 0.00 4.63
79 80 2.435059 GGCCAGACTTCACTCGGC 60.435 66.667 0.00 0.00 42.21 5.54
80 81 2.811317 GCCAGACTTCACTCGGCG 60.811 66.667 0.00 0.00 32.14 6.46
81 82 2.125912 CCAGACTTCACTCGGCGG 60.126 66.667 7.21 0.00 0.00 6.13
82 83 2.651361 CAGACTTCACTCGGCGGT 59.349 61.111 7.21 0.19 0.00 5.68
83 84 1.734477 CAGACTTCACTCGGCGGTG 60.734 63.158 18.41 18.41 38.44 4.94
84 85 2.432628 GACTTCACTCGGCGGTGG 60.433 66.667 22.21 13.11 37.75 4.61
85 86 4.681978 ACTTCACTCGGCGGTGGC 62.682 66.667 22.21 0.00 37.75 5.01
86 87 4.379243 CTTCACTCGGCGGTGGCT 62.379 66.667 22.21 0.00 39.81 4.75
106 107 4.779733 GGGAGGAGGGGCGTGAGA 62.780 72.222 0.00 0.00 0.00 3.27
107 108 3.151022 GGAGGAGGGGCGTGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
108 109 3.151022 GAGGAGGGGCGTGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
109 110 3.663815 GAGGAGGGGCGTGAGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
110 111 3.151022 GGAGGGGCGTGAGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
111 112 3.151022 GAGGGGCGTGAGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
112 113 4.787280 AGGGGCGTGAGAGGAGGG 62.787 72.222 0.00 0.00 0.00 4.30
114 115 3.003763 GGGCGTGAGAGGAGGGTT 61.004 66.667 0.00 0.00 0.00 4.11
115 116 2.266055 GGCGTGAGAGGAGGGTTG 59.734 66.667 0.00 0.00 0.00 3.77
116 117 2.266055 GCGTGAGAGGAGGGTTGG 59.734 66.667 0.00 0.00 0.00 3.77
117 118 2.982130 CGTGAGAGGAGGGTTGGG 59.018 66.667 0.00 0.00 0.00 4.12
118 119 2.660064 CGTGAGAGGAGGGTTGGGG 61.660 68.421 0.00 0.00 0.00 4.96
119 120 2.610859 TGAGAGGAGGGTTGGGGC 60.611 66.667 0.00 0.00 0.00 5.80
120 121 3.787001 GAGAGGAGGGTTGGGGCG 61.787 72.222 0.00 0.00 0.00 6.13
142 143 4.832608 CGGCGTGCTAGGGTTCCC 62.833 72.222 0.00 0.00 0.00 3.97
143 144 4.484872 GGCGTGCTAGGGTTCCCC 62.485 72.222 4.02 0.00 45.90 4.81
160 161 4.323477 CCGGTCGCAGGTGGGAAA 62.323 66.667 0.00 0.00 38.76 3.13
161 162 2.742372 CGGTCGCAGGTGGGAAAG 60.742 66.667 0.00 0.00 38.76 2.62
162 163 2.430367 GGTCGCAGGTGGGAAAGT 59.570 61.111 0.00 0.00 38.76 2.66
163 164 1.966451 GGTCGCAGGTGGGAAAGTG 60.966 63.158 0.00 0.00 38.76 3.16
164 165 2.281484 TCGCAGGTGGGAAAGTGC 60.281 61.111 0.00 0.00 33.89 4.40
165 166 3.365265 CGCAGGTGGGAAAGTGCC 61.365 66.667 0.00 0.00 31.98 5.01
166 167 2.203480 GCAGGTGGGAAAGTGCCA 60.203 61.111 0.00 0.00 34.62 4.92
167 168 2.270986 GCAGGTGGGAAAGTGCCAG 61.271 63.158 0.00 0.00 39.03 4.85
168 169 1.604593 CAGGTGGGAAAGTGCCAGG 60.605 63.158 0.00 0.00 39.03 4.45
169 170 1.774217 AGGTGGGAAAGTGCCAGGA 60.774 57.895 0.00 0.00 39.03 3.86
170 171 1.152830 GGTGGGAAAGTGCCAGGAA 59.847 57.895 0.00 0.00 39.03 3.36
171 172 1.179174 GGTGGGAAAGTGCCAGGAAC 61.179 60.000 0.00 0.00 39.03 3.62
172 173 1.152830 TGGGAAAGTGCCAGGAACC 59.847 57.895 0.00 0.00 30.85 3.62
173 174 1.152830 GGGAAAGTGCCAGGAACCA 59.847 57.895 0.00 0.00 0.00 3.67
174 175 0.469144 GGGAAAGTGCCAGGAACCAA 60.469 55.000 0.00 0.00 0.00 3.67
175 176 1.632589 GGAAAGTGCCAGGAACCAAT 58.367 50.000 0.00 0.00 0.00 3.16
176 177 1.970640 GGAAAGTGCCAGGAACCAATT 59.029 47.619 0.00 0.00 0.00 2.32
177 178 3.161866 GGAAAGTGCCAGGAACCAATTA 58.838 45.455 0.00 0.00 0.00 1.40
178 179 3.056821 GGAAAGTGCCAGGAACCAATTAC 60.057 47.826 0.00 0.00 0.00 1.89
179 180 2.969821 AGTGCCAGGAACCAATTACA 57.030 45.000 0.00 0.00 0.00 2.41
180 181 2.514803 AGTGCCAGGAACCAATTACAC 58.485 47.619 0.00 0.00 0.00 2.90
181 182 1.199097 GTGCCAGGAACCAATTACACG 59.801 52.381 0.00 0.00 0.00 4.49
182 183 0.808755 GCCAGGAACCAATTACACGG 59.191 55.000 0.00 0.00 0.00 4.94
183 184 1.884928 GCCAGGAACCAATTACACGGT 60.885 52.381 0.00 0.00 36.98 4.83
185 186 2.227865 CCAGGAACCAATTACACGGTTG 59.772 50.000 2.82 0.00 45.54 3.77
186 187 2.882137 CAGGAACCAATTACACGGTTGT 59.118 45.455 2.82 0.00 45.54 3.32
187 188 3.058501 CAGGAACCAATTACACGGTTGTC 60.059 47.826 2.82 0.00 45.54 3.18
188 189 2.879646 GGAACCAATTACACGGTTGTCA 59.120 45.455 2.82 0.00 45.54 3.58
189 190 3.058501 GGAACCAATTACACGGTTGTCAG 60.059 47.826 2.82 0.00 45.54 3.51
190 191 1.877443 ACCAATTACACGGTTGTCAGC 59.123 47.619 0.00 0.00 37.15 4.26
191 192 2.151202 CCAATTACACGGTTGTCAGCT 58.849 47.619 0.00 0.00 37.15 4.24
192 193 2.159627 CCAATTACACGGTTGTCAGCTC 59.840 50.000 0.00 0.00 37.15 4.09
193 194 2.805671 CAATTACACGGTTGTCAGCTCA 59.194 45.455 0.00 0.00 37.15 4.26
194 195 2.605837 TTACACGGTTGTCAGCTCAA 57.394 45.000 0.00 0.00 37.15 3.02
195 196 2.831685 TACACGGTTGTCAGCTCAAT 57.168 45.000 0.00 0.00 37.15 2.57
196 197 1.229428 ACACGGTTGTCAGCTCAATG 58.771 50.000 0.00 0.00 0.00 2.82
197 198 1.229428 CACGGTTGTCAGCTCAATGT 58.771 50.000 0.00 0.00 0.00 2.71
198 199 1.603802 CACGGTTGTCAGCTCAATGTT 59.396 47.619 0.00 0.00 0.00 2.71
199 200 2.033299 CACGGTTGTCAGCTCAATGTTT 59.967 45.455 0.00 0.00 0.00 2.83
200 201 2.290641 ACGGTTGTCAGCTCAATGTTTC 59.709 45.455 0.00 0.00 0.00 2.78
201 202 2.549754 CGGTTGTCAGCTCAATGTTTCT 59.450 45.455 0.00 0.00 0.00 2.52
202 203 3.003689 CGGTTGTCAGCTCAATGTTTCTT 59.996 43.478 0.00 0.00 0.00 2.52
203 204 4.213270 CGGTTGTCAGCTCAATGTTTCTTA 59.787 41.667 0.00 0.00 0.00 2.10
204 205 5.277779 CGGTTGTCAGCTCAATGTTTCTTAA 60.278 40.000 0.00 0.00 0.00 1.85
205 206 6.503524 GGTTGTCAGCTCAATGTTTCTTAAA 58.496 36.000 0.00 0.00 0.00 1.52
206 207 6.978080 GGTTGTCAGCTCAATGTTTCTTAAAA 59.022 34.615 0.00 0.00 0.00 1.52
207 208 7.491048 GGTTGTCAGCTCAATGTTTCTTAAAAA 59.509 33.333 0.00 0.00 0.00 1.94
208 209 9.034544 GTTGTCAGCTCAATGTTTCTTAAAAAT 57.965 29.630 0.00 0.00 0.00 1.82
210 211 9.897744 TGTCAGCTCAATGTTTCTTAAAAATAG 57.102 29.630 0.00 0.00 0.00 1.73
211 212 9.899226 GTCAGCTCAATGTTTCTTAAAAATAGT 57.101 29.630 0.00 0.00 0.00 2.12
234 235 8.396272 AGTTTCTTATATTTTGTGTGCACTCT 57.604 30.769 19.41 0.88 0.00 3.24
235 236 8.292448 AGTTTCTTATATTTTGTGTGCACTCTG 58.708 33.333 19.41 0.00 0.00 3.35
236 237 7.744087 TTCTTATATTTTGTGTGCACTCTGT 57.256 32.000 19.41 5.00 0.00 3.41
237 238 8.840833 TTCTTATATTTTGTGTGCACTCTGTA 57.159 30.769 19.41 6.93 0.00 2.74
238 239 8.840833 TCTTATATTTTGTGTGCACTCTGTAA 57.159 30.769 19.41 10.25 0.00 2.41
239 240 8.935844 TCTTATATTTTGTGTGCACTCTGTAAG 58.064 33.333 19.41 14.81 0.00 2.34
240 241 4.836125 ATTTTGTGTGCACTCTGTAAGG 57.164 40.909 19.41 0.00 0.00 2.69
241 242 3.275617 TTTGTGTGCACTCTGTAAGGT 57.724 42.857 19.41 0.00 0.00 3.50
242 243 3.275617 TTGTGTGCACTCTGTAAGGTT 57.724 42.857 19.41 0.00 0.00 3.50
243 244 3.275617 TGTGTGCACTCTGTAAGGTTT 57.724 42.857 19.41 0.00 0.00 3.27
244 245 4.409718 TGTGTGCACTCTGTAAGGTTTA 57.590 40.909 19.41 0.00 0.00 2.01
245 246 4.124238 TGTGTGCACTCTGTAAGGTTTAC 58.876 43.478 19.41 3.25 0.00 2.01
246 247 4.141801 TGTGTGCACTCTGTAAGGTTTACT 60.142 41.667 19.41 0.00 0.00 2.24
247 248 4.814771 GTGTGCACTCTGTAAGGTTTACTT 59.185 41.667 19.41 0.00 43.28 2.24
248 249 5.050295 GTGTGCACTCTGTAAGGTTTACTTC 60.050 44.000 19.41 0.00 40.64 3.01
249 250 5.054477 GTGCACTCTGTAAGGTTTACTTCA 58.946 41.667 10.32 0.00 40.64 3.02
250 251 5.526111 GTGCACTCTGTAAGGTTTACTTCAA 59.474 40.000 10.32 0.00 40.64 2.69
251 252 6.037830 GTGCACTCTGTAAGGTTTACTTCAAA 59.962 38.462 10.32 0.00 40.64 2.69
252 253 6.770785 TGCACTCTGTAAGGTTTACTTCAAAT 59.229 34.615 1.24 0.00 40.64 2.32
253 254 7.078228 GCACTCTGTAAGGTTTACTTCAAATG 58.922 38.462 1.24 0.00 40.64 2.32
254 255 7.255139 GCACTCTGTAAGGTTTACTTCAAATGT 60.255 37.037 1.24 0.00 40.64 2.71
255 256 8.621286 CACTCTGTAAGGTTTACTTCAAATGTT 58.379 33.333 1.24 0.00 40.64 2.71
256 257 8.837389 ACTCTGTAAGGTTTACTTCAAATGTTC 58.163 33.333 1.24 0.00 40.64 3.18
257 258 8.161699 TCTGTAAGGTTTACTTCAAATGTTCC 57.838 34.615 1.24 0.00 40.64 3.62
258 259 7.996644 TCTGTAAGGTTTACTTCAAATGTTCCT 59.003 33.333 1.24 0.00 40.64 3.36
259 260 8.528044 TGTAAGGTTTACTTCAAATGTTCCTT 57.472 30.769 0.00 0.00 40.64 3.36
260 261 8.973182 TGTAAGGTTTACTTCAAATGTTCCTTT 58.027 29.630 0.00 0.00 40.64 3.11
261 262 9.244799 GTAAGGTTTACTTCAAATGTTCCTTTG 57.755 33.333 0.00 0.00 40.64 2.77
262 263 6.816136 AGGTTTACTTCAAATGTTCCTTTGG 58.184 36.000 0.00 0.00 36.87 3.28
263 264 6.609616 AGGTTTACTTCAAATGTTCCTTTGGA 59.390 34.615 0.00 0.00 36.87 3.53
264 265 7.290014 AGGTTTACTTCAAATGTTCCTTTGGAT 59.710 33.333 0.00 0.00 36.87 3.41
265 266 7.384932 GGTTTACTTCAAATGTTCCTTTGGATG 59.615 37.037 0.00 0.00 36.87 3.51
266 267 5.473066 ACTTCAAATGTTCCTTTGGATGG 57.527 39.130 0.00 0.00 36.87 3.51
267 268 4.901250 ACTTCAAATGTTCCTTTGGATGGT 59.099 37.500 0.00 0.00 36.87 3.55
268 269 6.074648 ACTTCAAATGTTCCTTTGGATGGTA 58.925 36.000 0.00 0.00 36.87 3.25
269 270 5.975693 TCAAATGTTCCTTTGGATGGTAC 57.024 39.130 0.00 0.00 36.87 3.34
270 271 5.640147 TCAAATGTTCCTTTGGATGGTACT 58.360 37.500 0.00 0.00 36.87 2.73
271 272 5.710099 TCAAATGTTCCTTTGGATGGTACTC 59.290 40.000 0.00 0.00 36.87 2.59
272 273 5.520748 AATGTTCCTTTGGATGGTACTCT 57.479 39.130 0.00 0.00 0.00 3.24
273 274 4.993705 TGTTCCTTTGGATGGTACTCTT 57.006 40.909 0.00 0.00 0.00 2.85
274 275 4.906618 TGTTCCTTTGGATGGTACTCTTC 58.093 43.478 0.00 0.00 0.00 2.87
275 276 3.887621 TCCTTTGGATGGTACTCTTCG 57.112 47.619 0.00 0.00 0.00 3.79
276 277 3.170717 TCCTTTGGATGGTACTCTTCGT 58.829 45.455 0.00 0.00 0.00 3.85
277 278 3.056107 TCCTTTGGATGGTACTCTTCGTG 60.056 47.826 0.00 0.00 0.00 4.35
278 279 3.306780 CCTTTGGATGGTACTCTTCGTGT 60.307 47.826 0.00 0.00 0.00 4.49
279 280 3.313012 TTGGATGGTACTCTTCGTGTG 57.687 47.619 0.00 0.00 0.00 3.82
280 281 2.244695 TGGATGGTACTCTTCGTGTGT 58.755 47.619 0.00 0.00 0.00 3.72
281 282 3.423749 TGGATGGTACTCTTCGTGTGTA 58.576 45.455 0.00 0.00 0.00 2.90
282 283 3.827876 TGGATGGTACTCTTCGTGTGTAA 59.172 43.478 0.00 0.00 0.00 2.41
283 284 4.171754 GGATGGTACTCTTCGTGTGTAAC 58.828 47.826 0.00 0.00 34.09 2.50
284 285 4.082354 GGATGGTACTCTTCGTGTGTAACT 60.082 45.833 0.00 0.00 38.04 2.24
285 286 4.924305 TGGTACTCTTCGTGTGTAACTT 57.076 40.909 0.00 0.00 38.04 2.66
286 287 4.613944 TGGTACTCTTCGTGTGTAACTTG 58.386 43.478 0.00 0.00 38.04 3.16
287 288 3.427863 GGTACTCTTCGTGTGTAACTTGC 59.572 47.826 0.00 0.00 38.04 4.01
288 289 3.454371 ACTCTTCGTGTGTAACTTGCT 57.546 42.857 0.00 0.00 38.04 3.91
289 290 4.579454 ACTCTTCGTGTGTAACTTGCTA 57.421 40.909 0.00 0.00 38.04 3.49
290 291 4.547532 ACTCTTCGTGTGTAACTTGCTAG 58.452 43.478 0.00 0.00 38.04 3.42
291 292 3.314553 TCTTCGTGTGTAACTTGCTAGC 58.685 45.455 8.10 8.10 38.04 3.42
292 293 2.804697 TCGTGTGTAACTTGCTAGCA 57.195 45.000 14.93 14.93 38.04 3.49
293 294 3.100658 TCGTGTGTAACTTGCTAGCAA 57.899 42.857 27.67 27.67 38.04 3.91
294 295 3.459145 TCGTGTGTAACTTGCTAGCAAA 58.541 40.909 28.95 13.60 38.04 3.68
295 296 4.062293 TCGTGTGTAACTTGCTAGCAAAT 58.938 39.130 28.95 18.84 38.04 2.32
296 297 4.513692 TCGTGTGTAACTTGCTAGCAAATT 59.486 37.500 28.95 27.16 38.04 1.82
297 298 5.008217 TCGTGTGTAACTTGCTAGCAAATTT 59.992 36.000 27.06 23.89 38.04 1.82
298 299 5.685511 CGTGTGTAACTTGCTAGCAAATTTT 59.314 36.000 27.06 21.75 38.04 1.82
299 300 6.344936 CGTGTGTAACTTGCTAGCAAATTTTG 60.345 38.462 27.06 18.63 38.04 2.44
300 301 6.475402 GTGTGTAACTTGCTAGCAAATTTTGT 59.525 34.615 27.06 19.25 38.04 2.83
301 302 7.010091 GTGTGTAACTTGCTAGCAAATTTTGTT 59.990 33.333 27.06 26.33 38.04 2.83
302 303 7.221838 TGTGTAACTTGCTAGCAAATTTTGTTC 59.778 33.333 27.06 19.27 38.04 3.18
303 304 6.699642 TGTAACTTGCTAGCAAATTTTGTTCC 59.300 34.615 27.06 18.66 35.33 3.62
304 305 5.275067 ACTTGCTAGCAAATTTTGTTCCA 57.725 34.783 28.95 4.43 35.33 3.53
305 306 5.857268 ACTTGCTAGCAAATTTTGTTCCAT 58.143 33.333 28.95 0.35 35.33 3.41
306 307 5.928264 ACTTGCTAGCAAATTTTGTTCCATC 59.072 36.000 28.95 0.00 35.33 3.51
307 308 4.819769 TGCTAGCAAATTTTGTTCCATCC 58.180 39.130 16.84 0.00 0.00 3.51
308 309 4.183865 GCTAGCAAATTTTGTTCCATCCC 58.816 43.478 10.63 0.00 0.00 3.85
309 310 3.317603 AGCAAATTTTGTTCCATCCCG 57.682 42.857 10.65 0.00 0.00 5.14
310 311 2.632512 AGCAAATTTTGTTCCATCCCGT 59.367 40.909 10.65 0.00 0.00 5.28
311 312 2.736192 GCAAATTTTGTTCCATCCCGTG 59.264 45.455 10.65 0.00 0.00 4.94
312 313 2.736192 CAAATTTTGTTCCATCCCGTGC 59.264 45.455 0.78 0.00 0.00 5.34
313 314 1.923356 ATTTTGTTCCATCCCGTGCT 58.077 45.000 0.00 0.00 0.00 4.40
314 315 2.570415 TTTTGTTCCATCCCGTGCTA 57.430 45.000 0.00 0.00 0.00 3.49
315 316 2.570415 TTTGTTCCATCCCGTGCTAA 57.430 45.000 0.00 0.00 0.00 3.09
316 317 1.816074 TTGTTCCATCCCGTGCTAAC 58.184 50.000 0.00 0.00 0.00 2.34
317 318 0.687920 TGTTCCATCCCGTGCTAACA 59.312 50.000 0.00 0.00 32.87 2.41
318 319 1.280710 TGTTCCATCCCGTGCTAACAT 59.719 47.619 0.00 0.00 31.35 2.71
319 320 1.940613 GTTCCATCCCGTGCTAACATC 59.059 52.381 0.00 0.00 0.00 3.06
320 321 1.199615 TCCATCCCGTGCTAACATCA 58.800 50.000 0.00 0.00 0.00 3.07
321 322 1.768275 TCCATCCCGTGCTAACATCAT 59.232 47.619 0.00 0.00 0.00 2.45
322 323 2.172505 TCCATCCCGTGCTAACATCATT 59.827 45.455 0.00 0.00 0.00 2.57
323 324 2.951642 CCATCCCGTGCTAACATCATTT 59.048 45.455 0.00 0.00 0.00 2.32
324 325 3.243168 CCATCCCGTGCTAACATCATTTG 60.243 47.826 0.00 0.00 0.00 2.32
325 326 3.066291 TCCCGTGCTAACATCATTTGT 57.934 42.857 0.00 0.00 41.53 2.83
327 328 3.823873 TCCCGTGCTAACATCATTTGTTT 59.176 39.130 0.00 0.00 46.51 2.83
328 329 5.004448 TCCCGTGCTAACATCATTTGTTTA 58.996 37.500 0.00 0.00 46.51 2.01
329 330 5.650266 TCCCGTGCTAACATCATTTGTTTAT 59.350 36.000 0.00 0.00 46.51 1.40
330 331 5.971202 CCCGTGCTAACATCATTTGTTTATC 59.029 40.000 0.00 0.00 46.51 1.75
331 332 6.404184 CCCGTGCTAACATCATTTGTTTATCA 60.404 38.462 0.00 0.00 46.51 2.15
332 333 7.026562 CCGTGCTAACATCATTTGTTTATCAA 58.973 34.615 0.00 0.00 46.51 2.57
333 334 7.540400 CCGTGCTAACATCATTTGTTTATCAAA 59.460 33.333 0.00 0.00 46.51 2.69
348 349 9.646427 TTGTTTATCAAATTATTGTTGTAGCCC 57.354 29.630 0.00 0.00 37.79 5.19
349 350 9.030452 TGTTTATCAAATTATTGTTGTAGCCCT 57.970 29.630 0.00 0.00 37.79 5.19
350 351 9.301153 GTTTATCAAATTATTGTTGTAGCCCTG 57.699 33.333 0.00 0.00 37.79 4.45
351 352 8.815565 TTATCAAATTATTGTTGTAGCCCTGA 57.184 30.769 0.00 0.00 37.79 3.86
352 353 7.902920 ATCAAATTATTGTTGTAGCCCTGAT 57.097 32.000 0.00 0.00 37.79 2.90
353 354 7.716799 TCAAATTATTGTTGTAGCCCTGATT 57.283 32.000 0.00 0.00 37.79 2.57
354 355 7.546358 TCAAATTATTGTTGTAGCCCTGATTG 58.454 34.615 0.00 0.00 37.79 2.67
355 356 4.981806 TTATTGTTGTAGCCCTGATTGC 57.018 40.909 0.00 0.00 0.00 3.56
356 357 2.584835 TTGTTGTAGCCCTGATTGCT 57.415 45.000 0.00 0.00 42.81 3.91
357 358 2.113860 TGTTGTAGCCCTGATTGCTC 57.886 50.000 0.00 0.00 40.23 4.26
358 359 1.630369 TGTTGTAGCCCTGATTGCTCT 59.370 47.619 0.00 0.00 40.23 4.09
359 360 2.040278 TGTTGTAGCCCTGATTGCTCTT 59.960 45.455 0.00 0.00 40.23 2.85
360 361 3.084786 GTTGTAGCCCTGATTGCTCTTT 58.915 45.455 0.00 0.00 40.23 2.52
361 362 2.991250 TGTAGCCCTGATTGCTCTTTC 58.009 47.619 0.00 0.00 40.23 2.62
362 363 2.573462 TGTAGCCCTGATTGCTCTTTCT 59.427 45.455 0.00 0.00 40.23 2.52
363 364 2.125773 AGCCCTGATTGCTCTTTCTG 57.874 50.000 0.00 0.00 32.41 3.02
364 365 0.455005 GCCCTGATTGCTCTTTCTGC 59.545 55.000 0.00 0.00 0.00 4.26
365 366 1.954258 GCCCTGATTGCTCTTTCTGCT 60.954 52.381 0.00 0.00 0.00 4.24
366 367 2.444421 CCCTGATTGCTCTTTCTGCTT 58.556 47.619 0.00 0.00 0.00 3.91
367 368 2.163815 CCCTGATTGCTCTTTCTGCTTG 59.836 50.000 0.00 0.00 0.00 4.01
368 369 2.818432 CCTGATTGCTCTTTCTGCTTGT 59.182 45.455 0.00 0.00 0.00 3.16
369 370 4.005650 CCTGATTGCTCTTTCTGCTTGTA 58.994 43.478 0.00 0.00 0.00 2.41
370 371 4.639310 CCTGATTGCTCTTTCTGCTTGTAT 59.361 41.667 0.00 0.00 0.00 2.29
371 372 5.819379 CCTGATTGCTCTTTCTGCTTGTATA 59.181 40.000 0.00 0.00 0.00 1.47
372 373 6.238320 CCTGATTGCTCTTTCTGCTTGTATAC 60.238 42.308 0.00 0.00 0.00 1.47
373 374 6.409704 TGATTGCTCTTTCTGCTTGTATACT 58.590 36.000 4.17 0.00 0.00 2.12
374 375 6.881065 TGATTGCTCTTTCTGCTTGTATACTT 59.119 34.615 4.17 0.00 0.00 2.24
375 376 7.391554 TGATTGCTCTTTCTGCTTGTATACTTT 59.608 33.333 4.17 0.00 0.00 2.66
376 377 6.486253 TGCTCTTTCTGCTTGTATACTTTG 57.514 37.500 4.17 0.00 0.00 2.77
377 378 5.997746 TGCTCTTTCTGCTTGTATACTTTGT 59.002 36.000 4.17 0.00 0.00 2.83
378 379 6.486657 TGCTCTTTCTGCTTGTATACTTTGTT 59.513 34.615 4.17 0.00 0.00 2.83
379 380 6.798959 GCTCTTTCTGCTTGTATACTTTGTTG 59.201 38.462 4.17 0.00 0.00 3.33
380 381 7.520614 GCTCTTTCTGCTTGTATACTTTGTTGT 60.521 37.037 4.17 0.00 0.00 3.32
381 382 7.639039 TCTTTCTGCTTGTATACTTTGTTGTG 58.361 34.615 4.17 0.00 0.00 3.33
382 383 7.497579 TCTTTCTGCTTGTATACTTTGTTGTGA 59.502 33.333 4.17 0.00 0.00 3.58
383 384 7.561021 TTCTGCTTGTATACTTTGTTGTGAA 57.439 32.000 4.17 0.00 0.00 3.18
384 385 6.954944 TCTGCTTGTATACTTTGTTGTGAAC 58.045 36.000 4.17 0.00 0.00 3.18
385 386 6.540551 TCTGCTTGTATACTTTGTTGTGAACA 59.459 34.615 4.17 0.00 40.21 3.18
386 387 6.491394 TGCTTGTATACTTTGTTGTGAACAC 58.509 36.000 4.17 0.00 41.97 3.32
387 388 6.317642 TGCTTGTATACTTTGTTGTGAACACT 59.682 34.615 4.17 0.00 41.97 3.55
388 389 6.851330 GCTTGTATACTTTGTTGTGAACACTC 59.149 38.462 4.17 1.24 41.97 3.51
389 390 7.466725 GCTTGTATACTTTGTTGTGAACACTCA 60.467 37.037 4.17 3.57 41.97 3.41
390 391 8.445275 TTGTATACTTTGTTGTGAACACTCAT 57.555 30.769 4.17 0.00 41.97 2.90
391 392 9.549078 TTGTATACTTTGTTGTGAACACTCATA 57.451 29.630 4.17 1.70 41.97 2.15
392 393 9.549078 TGTATACTTTGTTGTGAACACTCATAA 57.451 29.630 4.17 0.00 41.97 1.90
418 419 9.533831 ACATTATTTTCTCTATGGGAAACAACT 57.466 29.630 0.00 0.00 33.22 3.16
420 421 9.981460 ATTATTTTCTCTATGGGAAACAACTCT 57.019 29.630 0.00 0.00 33.22 3.24
421 422 9.807921 TTATTTTCTCTATGGGAAACAACTCTT 57.192 29.630 0.00 0.00 33.22 2.85
422 423 7.510549 TTTTCTCTATGGGAAACAACTCTTG 57.489 36.000 0.00 0.00 33.22 3.02
423 424 5.165961 TCTCTATGGGAAACAACTCTTGG 57.834 43.478 0.00 0.00 34.12 3.61
424 425 4.019321 TCTCTATGGGAAACAACTCTTGGG 60.019 45.833 0.00 0.00 34.12 4.12
425 426 3.913799 TCTATGGGAAACAACTCTTGGGA 59.086 43.478 0.00 0.00 34.12 4.37
426 427 3.611025 ATGGGAAACAACTCTTGGGAA 57.389 42.857 0.00 0.00 34.12 3.97
427 428 3.611025 TGGGAAACAACTCTTGGGAAT 57.389 42.857 0.00 0.00 34.12 3.01
428 429 3.496331 TGGGAAACAACTCTTGGGAATC 58.504 45.455 0.00 0.00 34.12 2.52
429 430 2.826128 GGGAAACAACTCTTGGGAATCC 59.174 50.000 0.00 0.00 34.12 3.01
430 431 3.500471 GGGAAACAACTCTTGGGAATCCT 60.500 47.826 0.00 0.00 34.12 3.24
431 432 3.507622 GGAAACAACTCTTGGGAATCCTG 59.492 47.826 0.00 0.00 34.12 3.86
432 433 4.398319 GAAACAACTCTTGGGAATCCTGA 58.602 43.478 0.00 0.00 34.12 3.86
433 434 4.453480 AACAACTCTTGGGAATCCTGAA 57.547 40.909 0.00 0.00 34.12 3.02
434 435 4.453480 ACAACTCTTGGGAATCCTGAAA 57.547 40.909 0.00 0.00 34.12 2.69
435 436 4.803452 ACAACTCTTGGGAATCCTGAAAA 58.197 39.130 0.00 0.00 34.12 2.29
436 437 4.829492 ACAACTCTTGGGAATCCTGAAAAG 59.171 41.667 0.00 0.00 34.12 2.27
437 438 5.072741 CAACTCTTGGGAATCCTGAAAAGA 58.927 41.667 0.00 3.56 0.00 2.52
438 439 5.324832 ACTCTTGGGAATCCTGAAAAGAA 57.675 39.130 0.00 0.00 0.00 2.52
439 440 5.320277 ACTCTTGGGAATCCTGAAAAGAAG 58.680 41.667 0.00 2.26 0.00 2.85
440 441 5.163045 ACTCTTGGGAATCCTGAAAAGAAGT 60.163 40.000 0.00 2.76 0.00 3.01
441 442 5.072741 TCTTGGGAATCCTGAAAAGAAGTG 58.927 41.667 0.00 0.00 0.00 3.16
442 443 3.766545 TGGGAATCCTGAAAAGAAGTGG 58.233 45.455 0.00 0.00 0.00 4.00
443 444 3.397618 TGGGAATCCTGAAAAGAAGTGGA 59.602 43.478 0.00 0.00 0.00 4.02
444 445 4.141041 TGGGAATCCTGAAAAGAAGTGGAA 60.141 41.667 0.00 0.00 0.00 3.53
473 474 2.554344 GCCCCAACCATGAAGTACTTGA 60.554 50.000 14.14 4.68 0.00 3.02
523 524 6.494893 TTGACTATCTGTGTATGTTTTGGC 57.505 37.500 0.00 0.00 0.00 4.52
525 526 6.941857 TGACTATCTGTGTATGTTTTGGCTA 58.058 36.000 0.00 0.00 0.00 3.93
534 535 7.898918 TGTGTATGTTTTGGCTAGTTCTAGTA 58.101 34.615 8.38 0.00 0.00 1.82
599 600 4.334443 CTGTTATACTTTGTGCGCACATC 58.666 43.478 40.78 22.42 41.52 3.06
601 602 1.819928 ATACTTTGTGCGCACATCCA 58.180 45.000 40.78 25.63 41.52 3.41
609 610 1.726248 GTGCGCACATCCAAAAATTCC 59.274 47.619 34.52 1.97 0.00 3.01
1156 1178 2.352503 AATCAATGAAAGTGTGGCGC 57.647 45.000 0.00 0.00 31.21 6.53
1192 1214 6.144078 ACCACAGGTTTGTTAAGTCATTTC 57.856 37.500 0.00 0.00 34.62 2.17
1706 3913 1.800805 AGCTTGTCCAACATCGTCTG 58.199 50.000 0.00 0.00 0.00 3.51
1707 3914 1.344438 AGCTTGTCCAACATCGTCTGA 59.656 47.619 0.00 0.00 0.00 3.27
1719 3926 0.036388 TCGTCTGAGATGGTTTGGGC 60.036 55.000 1.24 0.00 0.00 5.36
1728 3935 4.402155 TGAGATGGTTTGGGCATATTCAAC 59.598 41.667 0.00 0.00 0.00 3.18
1794 4001 2.427453 GCGGAGAATGTCAAGAGAGGTA 59.573 50.000 0.00 0.00 0.00 3.08
1827 4034 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
1842 4049 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
1843 4050 3.349022 AGTCCGTTAAGAGAGACCTGAG 58.651 50.000 0.00 0.00 0.00 3.35
1875 4082 7.403346 GAGTATCACCAAAGAACCAGCTATGG 61.403 46.154 0.00 0.00 44.18 2.74
1913 4120 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
1948 4155 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
1953 4160 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
1961 4168 2.468915 GTTTCACCTCTAGCCTACCCT 58.531 52.381 0.00 0.00 0.00 4.34
1972 4179 3.434940 AGCCTACCCTAACTTGTTTGG 57.565 47.619 6.94 6.94 0.00 3.28
1974 4181 2.040679 GCCTACCCTAACTTGTTTGGGA 59.959 50.000 29.81 17.01 42.11 4.37
1976 4183 3.329814 CCTACCCTAACTTGTTTGGGACT 59.670 47.826 29.81 16.53 42.11 3.85
1977 4184 4.533311 CCTACCCTAACTTGTTTGGGACTA 59.467 45.833 29.81 16.71 42.11 2.59
1978 4185 5.013391 CCTACCCTAACTTGTTTGGGACTAA 59.987 44.000 29.81 15.77 42.11 2.24
1980 4187 5.382616 ACCCTAACTTGTTTGGGACTAAAG 58.617 41.667 29.81 9.99 42.11 1.85
1981 4188 4.765339 CCCTAACTTGTTTGGGACTAAAGG 59.235 45.833 22.48 6.67 42.11 3.11
1982 4189 4.217767 CCTAACTTGTTTGGGACTAAAGGC 59.782 45.833 6.17 0.00 38.11 4.35
1983 4190 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
1984 4191 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1985 4192 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1986 4193 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1987 4194 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1988 4195 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1989 4196 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
1990 4197 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
1991 4198 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
1992 4199 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
1993 4200 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
1994 4201 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
1995 4202 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
1996 4203 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
1997 4204 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
1998 4205 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
1999 4206 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2000 4207 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2043 4250 3.939592 GAGTGAGGCCACCTTGTTTATAC 59.060 47.826 5.01 0.00 44.22 1.47
3034 7490 8.752187 TCCCTTGTAACGAACTGTAATACTATT 58.248 33.333 0.00 0.00 0.00 1.73
3040 7496 7.982371 AACGAACTGTAATACTATTCCTTCG 57.018 36.000 0.00 0.00 35.33 3.79
3170 7629 3.088532 GGTTGTGTTGCCATTCCTGATA 58.911 45.455 0.00 0.00 0.00 2.15
3354 7813 4.855340 CCTTTTAGGAGGTTGAAGGCATA 58.145 43.478 0.00 0.00 37.67 3.14
3391 7850 0.544697 GCCTGGGAATCCGGTTTCTA 59.455 55.000 21.56 12.07 37.74 2.10
3392 7851 1.064979 GCCTGGGAATCCGGTTTCTAA 60.065 52.381 21.56 11.26 37.74 2.10
3592 8056 4.412796 TCTCAGCTCATATTGACCAAGG 57.587 45.455 0.00 0.00 0.00 3.61
3693 8253 8.043710 CCCCCATCTTTCTACTTCATCATATAC 58.956 40.741 0.00 0.00 0.00 1.47
4235 8844 2.351706 TGCGTTTTGGGACCTACTTT 57.648 45.000 0.00 0.00 0.00 2.66
4260 8869 4.900684 TGTAGCTTGTTTATGTGTGCCTA 58.099 39.130 0.00 0.00 0.00 3.93
5002 10568 1.934525 CTCAGCATGTCTCAGTGCATC 59.065 52.381 0.00 0.00 43.63 3.91
5077 10668 1.059913 AGGCTAGGTCCATACATGCC 58.940 55.000 0.00 0.00 37.17 4.40
5095 10686 0.768622 CCACCAAACACACCCTAGGA 59.231 55.000 11.48 0.00 0.00 2.94
5220 10820 9.569122 AAAGTACTGATAAAGCCTTTCAAGTTA 57.431 29.630 0.00 0.00 28.99 2.24
5295 10895 6.055588 CCTTTCAGTCCTAAACAAGTTGAGA 58.944 40.000 10.54 0.00 0.00 3.27
5412 11050 2.173519 GGCCTGCATTGTATATGCCAT 58.826 47.619 0.00 0.00 43.94 4.40
5446 11084 4.097892 ACGATGTTGGACAAGCTTCTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
5481 11119 5.365605 ACCCCAACTCTATCACGAATATCAA 59.634 40.000 0.00 0.00 0.00 2.57
5625 13973 5.314529 TCTAGGTCAATCGGTGTCCTATAG 58.685 45.833 11.34 0.00 44.09 1.31
5626 13974 3.912248 AGGTCAATCGGTGTCCTATAGT 58.088 45.455 0.00 0.00 43.15 2.12
5717 14065 4.344865 TCCCTTCCTGGTTGCGCC 62.345 66.667 4.18 0.00 37.90 6.53
5738 14086 2.125350 CTTCTCGCAGCTCACCCC 60.125 66.667 0.00 0.00 0.00 4.95
5756 14104 3.471806 GAACCTCTCCTCCCCGGC 61.472 72.222 0.00 0.00 0.00 6.13
5814 14162 2.403987 CGTGAGGCTCTACGTCCG 59.596 66.667 22.65 10.46 35.70 4.79
5815 14163 2.396955 CGTGAGGCTCTACGTCCGT 61.397 63.158 22.65 0.00 35.70 4.69
5862 14210 2.582687 CAAGTCGAACCAGTACGAGAC 58.417 52.381 0.00 0.00 39.16 3.36
5866 14214 0.517946 CGAACCAGTACGAGACGACG 60.518 60.000 0.00 0.00 39.31 5.12
5873 14221 3.358667 TACGAGACGACGTCGCTGC 62.359 63.158 35.92 24.77 45.32 5.25
5917 14265 2.064581 GGAGGACGTGGCCTGGTAT 61.065 63.158 0.00 0.00 38.73 2.73
5966 14314 1.576421 GCCAAGACCAAGAGCAACG 59.424 57.895 0.00 0.00 0.00 4.10
5967 14315 1.856265 GCCAAGACCAAGAGCAACGG 61.856 60.000 0.00 0.00 0.00 4.44
6029 14377 4.091945 CGATATCACCATCCTTATGCAACG 59.908 45.833 3.12 0.00 0.00 4.10
6049 14397 2.589798 TCGACCCGACATATTGGAAC 57.410 50.000 0.00 0.00 0.00 3.62
6346 14725 0.536006 GCTGACCCTTTGTGCTGTCT 60.536 55.000 0.00 0.00 0.00 3.41
6406 14785 5.834169 TGTTCGAACACTTGTCACAGTATA 58.166 37.500 26.53 0.00 33.17 1.47
6440 14819 9.988815 ATATCCTTGATGAGTGTAATGTACTTC 57.011 33.333 0.00 0.00 0.00 3.01
6457 14845 4.532314 ACTTCGTTAGGACTTTGTAGGG 57.468 45.455 0.00 0.00 0.00 3.53
6461 14849 2.093128 CGTTAGGACTTTGTAGGGCCAT 60.093 50.000 6.18 0.00 0.00 4.40
6502 14890 4.920640 TCTTATCGTAGGCCTTCTTCAG 57.079 45.455 12.58 0.32 0.00 3.02
6518 14907 4.074259 TCTTCAGGTCAATGAACACCATG 58.926 43.478 0.00 0.00 35.40 3.66
6527 14916 2.851263 TGAACACCATGTGTAGGTCC 57.149 50.000 0.00 0.00 46.79 4.46
6528 14917 2.334977 TGAACACCATGTGTAGGTCCT 58.665 47.619 0.00 0.00 46.79 3.85
6529 14918 2.708861 TGAACACCATGTGTAGGTCCTT 59.291 45.455 0.00 0.00 46.79 3.36
6626 15019 7.961351 TGAAACCAAACTGATTAATGGTCATT 58.039 30.769 0.00 1.65 45.15 2.57
6636 15032 8.587608 ACTGATTAATGGTCATTGTTGTCATTT 58.412 29.630 6.46 0.00 33.44 2.32
6655 15051 2.658373 TATCTTACGCGGTGCTCAAA 57.342 45.000 12.47 0.00 0.00 2.69
6667 15068 2.489722 GGTGCTCAAAATTCTCTCCCAC 59.510 50.000 0.00 0.00 0.00 4.61
6773 15175 8.312669 ACTAGTATACTCTGCCTTCATTCTTT 57.687 34.615 9.12 0.00 0.00 2.52
6802 15204 5.115480 TGTTGTTTTCCTGAAAAATGAGGC 58.885 37.500 6.63 0.00 41.37 4.70
6850 15254 3.213402 GTCTCCGAGGCCTCTCCG 61.213 72.222 29.73 17.83 40.77 4.63
6943 15352 2.550180 TCGTGGATTCATCGCACAAAAA 59.450 40.909 0.00 0.00 32.12 1.94
6949 15367 4.963953 GGATTCATCGCACAAAAAGTATCG 59.036 41.667 0.00 0.00 0.00 2.92
6952 15370 3.060230 TCATCGCACAAAAAGTATCGTCG 59.940 43.478 0.00 0.00 0.00 5.12
7007 15466 5.240844 TCATTCTTGCCATCTATGCTTGATG 59.759 40.000 7.03 7.03 40.51 3.07
7012 15471 3.117776 TGCCATCTATGCTTGATGTCCTT 60.118 43.478 11.20 0.00 39.54 3.36
7092 15551 4.402829 CCTCATCTTCCTCTCTCGGATTA 58.597 47.826 0.00 0.00 32.02 1.75
7137 15597 5.523438 TTTGCCTTCCTTCGTGTTTAAAT 57.477 34.783 0.00 0.00 0.00 1.40
7138 15598 6.636562 TTTGCCTTCCTTCGTGTTTAAATA 57.363 33.333 0.00 0.00 0.00 1.40
7603 16070 4.764823 AGGCAATTCCTCAAACGATTGTAA 59.235 37.500 5.26 0.10 43.20 2.41
7927 16394 5.367945 TTCTGGGAAGTTGTCTAGTGTTT 57.632 39.130 0.00 0.00 0.00 2.83
7996 16463 7.045416 TCGCATTCTTATGGTTAGTGTTATGT 58.955 34.615 0.00 0.00 32.15 2.29
8021 16488 8.905702 GTTTGATGCTACTTTTATGTTGAACTG 58.094 33.333 0.00 0.00 0.00 3.16
8070 16538 6.318648 TGTTAATCATGCTGGATACCAACTTC 59.681 38.462 0.00 0.00 30.80 3.01
8123 16592 3.181463 GGTTGACAGTGGTAGTGTTGGTA 60.181 47.826 0.00 0.00 30.64 3.25
8197 16666 4.475028 CGAAAGCAACAGCAATATTCACA 58.525 39.130 0.00 0.00 0.00 3.58
8236 16705 3.469008 TCGTCAGTGGTGAGTTTTCAT 57.531 42.857 0.00 0.00 35.39 2.57
8248 16721 5.048434 GGTGAGTTTTCATTTCCTCTCAAGG 60.048 44.000 0.00 0.00 38.72 3.61
8261 16734 7.554959 TTCCTCTCAAGGTAGTACTTCAATT 57.445 36.000 0.00 0.00 43.82 2.32
8262 16735 7.554959 TCCTCTCAAGGTAGTACTTCAATTT 57.445 36.000 0.00 0.00 43.82 1.82
8420 18197 3.325135 AGTTAGTAGCTACCCATGATGCC 59.675 47.826 20.31 0.00 0.00 4.40
8550 18328 7.200434 TGGAAGTTCTAAATCTAATGCCTCT 57.800 36.000 2.25 0.00 0.00 3.69
8654 18451 1.080772 TGGTTGCTGCGACGACTAG 60.081 57.895 13.57 0.00 0.00 2.57
8664 18461 1.226435 GACGACTAGGCTGTCTGCG 60.226 63.158 11.76 0.00 44.05 5.18
8718 18515 6.035650 GCTGTTACTTCTGCAATGACGTTATA 59.964 38.462 0.00 0.00 33.55 0.98
8719 18516 7.412563 GCTGTTACTTCTGCAATGACGTTATAA 60.413 37.037 0.00 0.00 33.55 0.98
8721 18518 5.796350 ACTTCTGCAATGACGTTATAACC 57.204 39.130 10.01 0.00 0.00 2.85
8781 18578 7.498900 TGAATCGCACTTATTTCCTCAATATGT 59.501 33.333 0.00 0.00 36.57 2.29
8782 18579 6.603237 TCGCACTTATTTCCTCAATATGTG 57.397 37.500 12.79 12.79 46.69 3.21
8787 18586 9.884465 GCACTTATTTCCTCAATATGTGTTATC 57.116 33.333 16.11 3.32 46.19 1.75
8903 20730 1.228228 GGCCTCCATTGCATCTGGA 59.772 57.895 15.58 15.58 40.49 3.86
8921 20748 2.507058 TGGATATGCTGCAGACCTCTTT 59.493 45.455 20.43 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.996786 GCAATGGGATGGCACGACTG 61.997 60.000 0.00 0.00 0.00 3.51
5 6 1.750399 GCAATGGGATGGCACGACT 60.750 57.895 0.00 0.00 0.00 4.18
6 7 2.774799 GGCAATGGGATGGCACGAC 61.775 63.158 0.00 0.00 44.66 4.34
8 9 3.891400 CGGCAATGGGATGGCACG 61.891 66.667 0.00 0.00 45.50 5.34
9 10 2.755469 ACGGCAATGGGATGGCAC 60.755 61.111 0.00 0.00 45.50 5.01
10 11 2.440065 GACGGCAATGGGATGGCA 60.440 61.111 0.00 0.00 45.50 4.92
11 12 3.219198 GGACGGCAATGGGATGGC 61.219 66.667 0.00 0.00 42.08 4.40
12 13 1.825191 CTGGACGGCAATGGGATGG 60.825 63.158 0.00 0.00 0.00 3.51
14 15 1.987807 CTCCTGGACGGCAATGGGAT 61.988 60.000 0.00 0.00 0.00 3.85
15 16 2.609299 TCCTGGACGGCAATGGGA 60.609 61.111 0.00 0.00 0.00 4.37
16 17 2.124570 CTCCTGGACGGCAATGGG 60.125 66.667 0.00 0.00 0.00 4.00
17 18 2.124570 CCTCCTGGACGGCAATGG 60.125 66.667 0.00 0.00 34.57 3.16
18 19 2.825836 GCCTCCTGGACGGCAATG 60.826 66.667 23.72 1.89 45.59 2.82
39 40 3.934962 GATCTGGGAGGGCGGCTC 61.935 72.222 9.56 4.34 0.00 4.70
42 43 3.554342 CTGGATCTGGGAGGGCGG 61.554 72.222 0.00 0.00 0.00 6.13
43 44 3.554342 CCTGGATCTGGGAGGGCG 61.554 72.222 0.00 0.00 0.00 6.13
44 45 2.040464 TCCTGGATCTGGGAGGGC 60.040 66.667 0.00 0.00 0.00 5.19
45 46 4.309879 CTCCTGGATCTGGGAGGG 57.690 66.667 19.71 4.03 43.78 4.30
47 48 2.146061 GGCCTCCTGGATCTGGGAG 61.146 68.421 20.20 20.20 46.22 4.30
48 49 2.040464 GGCCTCCTGGATCTGGGA 60.040 66.667 0.00 6.93 34.57 4.37
49 50 2.367377 TGGCCTCCTGGATCTGGG 60.367 66.667 3.32 0.00 34.57 4.45
50 51 1.383664 TCTGGCCTCCTGGATCTGG 60.384 63.158 3.32 0.00 34.57 3.86
51 52 0.690411 AGTCTGGCCTCCTGGATCTG 60.690 60.000 3.32 0.00 34.57 2.90
52 53 0.043940 AAGTCTGGCCTCCTGGATCT 59.956 55.000 3.32 0.00 34.57 2.75
53 54 0.467804 GAAGTCTGGCCTCCTGGATC 59.532 60.000 3.32 0.00 34.57 3.36
54 55 0.252881 TGAAGTCTGGCCTCCTGGAT 60.253 55.000 3.32 0.00 34.57 3.41
55 56 1.158466 TGAAGTCTGGCCTCCTGGA 59.842 57.895 3.32 0.00 34.57 3.86
56 57 1.197430 AGTGAAGTCTGGCCTCCTGG 61.197 60.000 3.32 0.00 0.00 4.45
57 58 0.248843 GAGTGAAGTCTGGCCTCCTG 59.751 60.000 3.32 0.00 0.00 3.86
58 59 1.254284 CGAGTGAAGTCTGGCCTCCT 61.254 60.000 3.32 0.00 0.00 3.69
59 60 1.216710 CGAGTGAAGTCTGGCCTCC 59.783 63.158 3.32 0.00 0.00 4.30
60 61 1.216710 CCGAGTGAAGTCTGGCCTC 59.783 63.158 3.32 0.00 0.00 4.70
61 62 2.948720 GCCGAGTGAAGTCTGGCCT 61.949 63.158 3.32 0.00 39.83 5.19
62 63 2.435059 GCCGAGTGAAGTCTGGCC 60.435 66.667 0.00 0.00 39.83 5.36
63 64 2.811317 CGCCGAGTGAAGTCTGGC 60.811 66.667 9.55 9.55 42.29 4.85
64 65 2.125912 CCGCCGAGTGAAGTCTGG 60.126 66.667 0.00 0.00 0.00 3.86
65 66 1.734477 CACCGCCGAGTGAAGTCTG 60.734 63.158 0.20 0.00 40.34 3.51
66 67 2.651361 CACCGCCGAGTGAAGTCT 59.349 61.111 0.20 0.00 40.34 3.24
67 68 2.432628 CCACCGCCGAGTGAAGTC 60.433 66.667 7.20 0.00 40.34 3.01
68 69 4.681978 GCCACCGCCGAGTGAAGT 62.682 66.667 7.20 0.00 40.34 3.01
69 70 4.379243 AGCCACCGCCGAGTGAAG 62.379 66.667 7.20 0.00 40.34 3.02
70 71 4.680237 CAGCCACCGCCGAGTGAA 62.680 66.667 7.20 0.00 40.34 3.18
89 90 4.779733 TCTCACGCCCCTCCTCCC 62.780 72.222 0.00 0.00 0.00 4.30
90 91 3.151022 CTCTCACGCCCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
91 92 3.151022 CCTCTCACGCCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
92 93 3.670629 CTCCTCTCACGCCCCTCCT 62.671 68.421 0.00 0.00 0.00 3.69
93 94 3.151022 CTCCTCTCACGCCCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
94 95 3.151022 CCTCCTCTCACGCCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
95 96 4.787280 CCCTCCTCTCACGCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
97 98 3.003763 AACCCTCCTCTCACGCCC 61.004 66.667 0.00 0.00 0.00 6.13
98 99 2.266055 CAACCCTCCTCTCACGCC 59.734 66.667 0.00 0.00 0.00 5.68
99 100 2.266055 CCAACCCTCCTCTCACGC 59.734 66.667 0.00 0.00 0.00 5.34
100 101 2.660064 CCCCAACCCTCCTCTCACG 61.660 68.421 0.00 0.00 0.00 4.35
101 102 2.972819 GCCCCAACCCTCCTCTCAC 61.973 68.421 0.00 0.00 0.00 3.51
102 103 2.610859 GCCCCAACCCTCCTCTCA 60.611 66.667 0.00 0.00 0.00 3.27
103 104 3.787001 CGCCCCAACCCTCCTCTC 61.787 72.222 0.00 0.00 0.00 3.20
143 144 4.323477 TTTCCCACCTGCGACCGG 62.323 66.667 0.00 0.00 0.00 5.28
144 145 2.742372 CTTTCCCACCTGCGACCG 60.742 66.667 0.00 0.00 0.00 4.79
145 146 1.966451 CACTTTCCCACCTGCGACC 60.966 63.158 0.00 0.00 0.00 4.79
146 147 2.617274 GCACTTTCCCACCTGCGAC 61.617 63.158 0.00 0.00 0.00 5.19
147 148 2.281484 GCACTTTCCCACCTGCGA 60.281 61.111 0.00 0.00 0.00 5.10
148 149 3.365265 GGCACTTTCCCACCTGCG 61.365 66.667 0.00 0.00 0.00 5.18
149 150 2.203480 TGGCACTTTCCCACCTGC 60.203 61.111 0.00 0.00 0.00 4.85
150 151 1.604593 CCTGGCACTTTCCCACCTG 60.605 63.158 0.00 0.00 0.00 4.00
151 152 1.360393 TTCCTGGCACTTTCCCACCT 61.360 55.000 0.00 0.00 0.00 4.00
152 153 1.152830 TTCCTGGCACTTTCCCACC 59.847 57.895 0.00 0.00 0.00 4.61
153 154 1.179174 GGTTCCTGGCACTTTCCCAC 61.179 60.000 0.00 0.00 0.00 4.61
154 155 1.152830 GGTTCCTGGCACTTTCCCA 59.847 57.895 0.00 0.00 0.00 4.37
155 156 0.469144 TTGGTTCCTGGCACTTTCCC 60.469 55.000 0.00 0.00 0.00 3.97
156 157 1.632589 ATTGGTTCCTGGCACTTTCC 58.367 50.000 0.00 0.00 0.00 3.13
157 158 3.572255 TGTAATTGGTTCCTGGCACTTTC 59.428 43.478 0.00 0.00 0.00 2.62
158 159 3.320826 GTGTAATTGGTTCCTGGCACTTT 59.679 43.478 0.00 0.00 0.00 2.66
159 160 2.890945 GTGTAATTGGTTCCTGGCACTT 59.109 45.455 0.00 0.00 0.00 3.16
160 161 2.514803 GTGTAATTGGTTCCTGGCACT 58.485 47.619 0.00 0.00 0.00 4.40
161 162 1.199097 CGTGTAATTGGTTCCTGGCAC 59.801 52.381 0.00 0.00 0.00 5.01
162 163 1.529226 CGTGTAATTGGTTCCTGGCA 58.471 50.000 0.00 0.00 0.00 4.92
163 164 0.808755 CCGTGTAATTGGTTCCTGGC 59.191 55.000 0.00 0.00 0.00 4.85
164 165 2.194201 ACCGTGTAATTGGTTCCTGG 57.806 50.000 0.00 0.00 33.81 4.45
165 166 2.882137 ACAACCGTGTAATTGGTTCCTG 59.118 45.455 0.00 0.00 45.10 3.86
166 167 3.143728 GACAACCGTGTAATTGGTTCCT 58.856 45.455 0.00 0.00 45.10 3.36
167 168 2.879646 TGACAACCGTGTAATTGGTTCC 59.120 45.455 0.00 0.00 45.10 3.62
168 169 3.608474 GCTGACAACCGTGTAATTGGTTC 60.608 47.826 0.00 0.00 45.10 3.62
170 171 1.877443 GCTGACAACCGTGTAATTGGT 59.123 47.619 0.00 0.00 38.41 3.67
171 172 2.151202 AGCTGACAACCGTGTAATTGG 58.849 47.619 0.00 0.00 38.41 3.16
172 173 2.805671 TGAGCTGACAACCGTGTAATTG 59.194 45.455 0.00 0.00 38.41 2.32
173 174 3.120321 TGAGCTGACAACCGTGTAATT 57.880 42.857 0.00 0.00 38.41 1.40
174 175 2.831685 TGAGCTGACAACCGTGTAAT 57.168 45.000 0.00 0.00 38.41 1.89
175 176 2.605837 TTGAGCTGACAACCGTGTAA 57.394 45.000 0.00 0.00 38.41 2.41
176 177 2.224185 ACATTGAGCTGACAACCGTGTA 60.224 45.455 0.00 0.00 38.41 2.90
177 178 1.229428 CATTGAGCTGACAACCGTGT 58.771 50.000 0.00 0.00 42.10 4.49
178 179 1.229428 ACATTGAGCTGACAACCGTG 58.771 50.000 0.00 0.00 32.50 4.94
179 180 1.967319 AACATTGAGCTGACAACCGT 58.033 45.000 0.00 0.00 32.50 4.83
180 181 2.549754 AGAAACATTGAGCTGACAACCG 59.450 45.455 0.00 0.00 32.50 4.44
181 182 4.574599 AAGAAACATTGAGCTGACAACC 57.425 40.909 0.00 0.00 32.50 3.77
182 183 7.985634 TTTTAAGAAACATTGAGCTGACAAC 57.014 32.000 0.00 0.00 32.50 3.32
184 185 9.897744 CTATTTTTAAGAAACATTGAGCTGACA 57.102 29.630 0.00 0.00 0.00 3.58
185 186 9.899226 ACTATTTTTAAGAAACATTGAGCTGAC 57.101 29.630 0.00 0.00 0.00 3.51
208 209 9.502091 AGAGTGCACACAAAATATAAGAAACTA 57.498 29.630 21.04 0.00 0.00 2.24
209 210 8.292448 CAGAGTGCACACAAAATATAAGAAACT 58.708 33.333 21.04 0.00 0.00 2.66
210 211 8.076178 ACAGAGTGCACACAAAATATAAGAAAC 58.924 33.333 21.04 0.00 0.00 2.78
211 212 8.165239 ACAGAGTGCACACAAAATATAAGAAA 57.835 30.769 21.04 0.00 0.00 2.52
212 213 7.744087 ACAGAGTGCACACAAAATATAAGAA 57.256 32.000 21.04 0.00 0.00 2.52
213 214 8.840833 TTACAGAGTGCACACAAAATATAAGA 57.159 30.769 21.04 0.00 0.00 2.10
214 215 8.177663 CCTTACAGAGTGCACACAAAATATAAG 58.822 37.037 21.04 13.72 0.00 1.73
215 216 7.663905 ACCTTACAGAGTGCACACAAAATATAA 59.336 33.333 21.04 5.59 0.00 0.98
216 217 7.165485 ACCTTACAGAGTGCACACAAAATATA 58.835 34.615 21.04 0.00 0.00 0.86
217 218 6.003950 ACCTTACAGAGTGCACACAAAATAT 58.996 36.000 21.04 0.00 0.00 1.28
218 219 5.373222 ACCTTACAGAGTGCACACAAAATA 58.627 37.500 21.04 0.49 0.00 1.40
219 220 4.207165 ACCTTACAGAGTGCACACAAAAT 58.793 39.130 21.04 0.00 0.00 1.82
220 221 3.616219 ACCTTACAGAGTGCACACAAAA 58.384 40.909 21.04 7.60 0.00 2.44
221 222 3.275617 ACCTTACAGAGTGCACACAAA 57.724 42.857 21.04 7.94 0.00 2.83
222 223 3.275617 AACCTTACAGAGTGCACACAA 57.724 42.857 21.04 2.44 0.00 3.33
223 224 3.275617 AAACCTTACAGAGTGCACACA 57.724 42.857 21.04 0.00 0.00 3.72
224 225 4.377897 AGTAAACCTTACAGAGTGCACAC 58.622 43.478 21.04 13.64 0.00 3.82
225 226 4.682778 AGTAAACCTTACAGAGTGCACA 57.317 40.909 21.04 0.00 0.00 4.57
226 227 5.054477 TGAAGTAAACCTTACAGAGTGCAC 58.946 41.667 9.40 9.40 32.03 4.57
227 228 5.284861 TGAAGTAAACCTTACAGAGTGCA 57.715 39.130 0.00 0.00 32.03 4.57
228 229 6.613755 TTTGAAGTAAACCTTACAGAGTGC 57.386 37.500 0.00 0.00 32.03 4.40
229 230 8.154649 ACATTTGAAGTAAACCTTACAGAGTG 57.845 34.615 0.00 0.00 32.03 3.51
230 231 8.747538 AACATTTGAAGTAAACCTTACAGAGT 57.252 30.769 0.00 0.00 32.03 3.24
231 232 8.290325 GGAACATTTGAAGTAAACCTTACAGAG 58.710 37.037 0.00 0.00 32.03 3.35
232 233 7.996644 AGGAACATTTGAAGTAAACCTTACAGA 59.003 33.333 0.00 0.00 32.03 3.41
233 234 8.166422 AGGAACATTTGAAGTAAACCTTACAG 57.834 34.615 0.00 0.00 32.03 2.74
234 235 8.528044 AAGGAACATTTGAAGTAAACCTTACA 57.472 30.769 0.00 0.00 34.18 2.41
235 236 9.244799 CAAAGGAACATTTGAAGTAAACCTTAC 57.755 33.333 6.13 0.00 41.71 2.34
236 237 8.417884 CCAAAGGAACATTTGAAGTAAACCTTA 58.582 33.333 12.41 0.00 41.71 2.69
237 238 7.125053 TCCAAAGGAACATTTGAAGTAAACCTT 59.875 33.333 12.41 0.00 41.71 3.50
238 239 6.609616 TCCAAAGGAACATTTGAAGTAAACCT 59.390 34.615 12.41 0.00 41.71 3.50
239 240 6.811954 TCCAAAGGAACATTTGAAGTAAACC 58.188 36.000 12.41 0.00 41.71 3.27
240 241 7.384932 CCATCCAAAGGAACATTTGAAGTAAAC 59.615 37.037 12.41 0.00 41.71 2.01
241 242 7.070571 ACCATCCAAAGGAACATTTGAAGTAAA 59.929 33.333 12.41 0.00 41.71 2.01
242 243 6.553100 ACCATCCAAAGGAACATTTGAAGTAA 59.447 34.615 12.41 0.00 41.71 2.24
243 244 6.074648 ACCATCCAAAGGAACATTTGAAGTA 58.925 36.000 12.41 0.00 41.71 2.24
244 245 4.901250 ACCATCCAAAGGAACATTTGAAGT 59.099 37.500 12.41 3.10 41.71 3.01
245 246 5.473066 ACCATCCAAAGGAACATTTGAAG 57.527 39.130 12.41 3.45 41.71 3.02
246 247 6.074648 AGTACCATCCAAAGGAACATTTGAA 58.925 36.000 12.41 0.00 41.71 2.69
247 248 5.640147 AGTACCATCCAAAGGAACATTTGA 58.360 37.500 12.41 1.44 41.71 2.69
248 249 5.711976 AGAGTACCATCCAAAGGAACATTTG 59.288 40.000 5.18 5.18 39.41 2.32
249 250 5.892348 AGAGTACCATCCAAAGGAACATTT 58.108 37.500 0.00 0.00 34.34 2.32
250 251 5.520748 AGAGTACCATCCAAAGGAACATT 57.479 39.130 0.00 0.00 34.34 2.71
251 252 5.501156 GAAGAGTACCATCCAAAGGAACAT 58.499 41.667 0.00 0.00 34.34 2.71
252 253 4.562757 CGAAGAGTACCATCCAAAGGAACA 60.563 45.833 0.00 0.00 34.34 3.18
253 254 3.933332 CGAAGAGTACCATCCAAAGGAAC 59.067 47.826 0.00 0.00 34.34 3.62
254 255 3.581332 ACGAAGAGTACCATCCAAAGGAA 59.419 43.478 0.00 0.00 34.34 3.36
255 256 3.056107 CACGAAGAGTACCATCCAAAGGA 60.056 47.826 0.00 0.00 35.55 3.36
256 257 3.262420 CACGAAGAGTACCATCCAAAGG 58.738 50.000 0.00 0.00 0.00 3.11
257 258 3.679980 CACACGAAGAGTACCATCCAAAG 59.320 47.826 0.00 0.00 0.00 2.77
258 259 3.070446 ACACACGAAGAGTACCATCCAAA 59.930 43.478 0.00 0.00 0.00 3.28
259 260 2.631062 ACACACGAAGAGTACCATCCAA 59.369 45.455 0.00 0.00 0.00 3.53
260 261 2.244695 ACACACGAAGAGTACCATCCA 58.755 47.619 0.00 0.00 0.00 3.41
261 262 4.082354 AGTTACACACGAAGAGTACCATCC 60.082 45.833 0.00 0.00 0.00 3.51
262 263 5.056894 AGTTACACACGAAGAGTACCATC 57.943 43.478 0.00 0.00 0.00 3.51
263 264 5.227908 CAAGTTACACACGAAGAGTACCAT 58.772 41.667 0.00 0.00 0.00 3.55
264 265 4.613944 CAAGTTACACACGAAGAGTACCA 58.386 43.478 0.00 0.00 0.00 3.25
265 266 3.427863 GCAAGTTACACACGAAGAGTACC 59.572 47.826 0.00 0.00 0.00 3.34
266 267 4.296690 AGCAAGTTACACACGAAGAGTAC 58.703 43.478 0.00 0.00 0.00 2.73
267 268 4.579454 AGCAAGTTACACACGAAGAGTA 57.421 40.909 0.00 0.00 0.00 2.59
268 269 3.454371 AGCAAGTTACACACGAAGAGT 57.546 42.857 0.00 0.00 0.00 3.24
269 270 3.365220 GCTAGCAAGTTACACACGAAGAG 59.635 47.826 10.63 0.00 0.00 2.85
270 271 3.243602 TGCTAGCAAGTTACACACGAAGA 60.244 43.478 16.84 0.00 0.00 2.87
271 272 3.057019 TGCTAGCAAGTTACACACGAAG 58.943 45.455 16.84 0.00 0.00 3.79
272 273 3.100658 TGCTAGCAAGTTACACACGAA 57.899 42.857 16.84 0.00 0.00 3.85
273 274 2.804697 TGCTAGCAAGTTACACACGA 57.195 45.000 16.84 0.00 0.00 4.35
274 275 3.870723 TTTGCTAGCAAGTTACACACG 57.129 42.857 27.82 0.00 37.24 4.49
275 276 6.475402 ACAAAATTTGCTAGCAAGTTACACAC 59.525 34.615 30.96 0.00 35.35 3.82
276 277 6.568869 ACAAAATTTGCTAGCAAGTTACACA 58.431 32.000 30.96 16.58 35.35 3.72
277 278 7.306574 GGAACAAAATTTGCTAGCAAGTTACAC 60.307 37.037 30.96 21.06 35.35 2.90
278 279 6.699642 GGAACAAAATTTGCTAGCAAGTTACA 59.300 34.615 30.96 17.91 35.35 2.41
279 280 6.699642 TGGAACAAAATTTGCTAGCAAGTTAC 59.300 34.615 30.96 27.45 35.35 2.50
280 281 6.810911 TGGAACAAAATTTGCTAGCAAGTTA 58.189 32.000 30.96 18.59 35.35 2.24
281 282 5.669477 TGGAACAAAATTTGCTAGCAAGTT 58.331 33.333 27.04 27.04 37.44 2.66
282 283 5.275067 TGGAACAAAATTTGCTAGCAAGT 57.725 34.783 27.82 23.41 33.91 3.16
299 300 1.940613 GATGTTAGCACGGGATGGAAC 59.059 52.381 0.00 0.00 0.00 3.62
300 301 1.557371 TGATGTTAGCACGGGATGGAA 59.443 47.619 0.00 0.00 0.00 3.53
301 302 1.199615 TGATGTTAGCACGGGATGGA 58.800 50.000 0.00 0.00 0.00 3.41
302 303 2.260844 ATGATGTTAGCACGGGATGG 57.739 50.000 0.00 0.00 0.00 3.51
303 304 3.378112 ACAAATGATGTTAGCACGGGATG 59.622 43.478 0.00 0.00 40.06 3.51
304 305 3.620488 ACAAATGATGTTAGCACGGGAT 58.380 40.909 0.00 0.00 40.06 3.85
305 306 3.066291 ACAAATGATGTTAGCACGGGA 57.934 42.857 0.00 0.00 40.06 5.14
322 323 9.646427 GGGCTACAACAATAATTTGATAAACAA 57.354 29.630 0.00 0.00 36.64 2.83
323 324 9.030452 AGGGCTACAACAATAATTTGATAAACA 57.970 29.630 0.00 0.00 36.64 2.83
324 325 9.301153 CAGGGCTACAACAATAATTTGATAAAC 57.699 33.333 0.00 0.00 36.64 2.01
325 326 9.249053 TCAGGGCTACAACAATAATTTGATAAA 57.751 29.630 0.00 0.00 36.64 1.40
326 327 8.815565 TCAGGGCTACAACAATAATTTGATAA 57.184 30.769 0.00 0.00 36.64 1.75
327 328 8.995027 ATCAGGGCTACAACAATAATTTGATA 57.005 30.769 0.00 0.00 36.64 2.15
328 329 7.902920 ATCAGGGCTACAACAATAATTTGAT 57.097 32.000 0.00 0.00 36.64 2.57
329 330 7.546358 CAATCAGGGCTACAACAATAATTTGA 58.454 34.615 0.00 0.00 36.64 2.69
330 331 6.256321 GCAATCAGGGCTACAACAATAATTTG 59.744 38.462 0.00 0.00 38.86 2.32
331 332 6.155049 AGCAATCAGGGCTACAACAATAATTT 59.845 34.615 0.00 0.00 40.47 1.82
332 333 5.658190 AGCAATCAGGGCTACAACAATAATT 59.342 36.000 0.00 0.00 40.47 1.40
333 334 5.203528 AGCAATCAGGGCTACAACAATAAT 58.796 37.500 0.00 0.00 40.47 1.28
334 335 4.599041 AGCAATCAGGGCTACAACAATAA 58.401 39.130 0.00 0.00 40.47 1.40
335 336 4.080356 AGAGCAATCAGGGCTACAACAATA 60.080 41.667 0.00 0.00 42.78 1.90
336 337 3.019564 GAGCAATCAGGGCTACAACAAT 58.980 45.455 0.00 0.00 42.78 2.71
337 338 2.040278 AGAGCAATCAGGGCTACAACAA 59.960 45.455 0.00 0.00 42.78 2.83
338 339 1.630369 AGAGCAATCAGGGCTACAACA 59.370 47.619 0.00 0.00 42.78 3.33
339 340 2.409948 AGAGCAATCAGGGCTACAAC 57.590 50.000 0.00 0.00 42.78 3.32
340 341 3.009473 AGAAAGAGCAATCAGGGCTACAA 59.991 43.478 0.00 0.00 42.78 2.41
341 342 2.573462 AGAAAGAGCAATCAGGGCTACA 59.427 45.455 0.00 0.00 42.78 2.74
342 343 2.941720 CAGAAAGAGCAATCAGGGCTAC 59.058 50.000 0.00 0.00 42.78 3.58
343 344 2.681976 GCAGAAAGAGCAATCAGGGCTA 60.682 50.000 0.00 0.00 42.78 3.93
344 345 1.954258 GCAGAAAGAGCAATCAGGGCT 60.954 52.381 0.00 0.00 46.07 5.19
345 346 0.455005 GCAGAAAGAGCAATCAGGGC 59.545 55.000 0.00 0.00 0.00 5.19
346 347 2.125773 AGCAGAAAGAGCAATCAGGG 57.874 50.000 0.00 0.00 0.00 4.45
347 348 2.818432 ACAAGCAGAAAGAGCAATCAGG 59.182 45.455 0.00 0.00 0.00 3.86
348 349 5.814764 ATACAAGCAGAAAGAGCAATCAG 57.185 39.130 0.00 0.00 0.00 2.90
349 350 6.409704 AGTATACAAGCAGAAAGAGCAATCA 58.590 36.000 5.50 0.00 0.00 2.57
350 351 6.917217 AGTATACAAGCAGAAAGAGCAATC 57.083 37.500 5.50 0.00 0.00 2.67
351 352 7.175641 ACAAAGTATACAAGCAGAAAGAGCAAT 59.824 33.333 5.50 0.00 0.00 3.56
352 353 6.486657 ACAAAGTATACAAGCAGAAAGAGCAA 59.513 34.615 5.50 0.00 0.00 3.91
353 354 5.997746 ACAAAGTATACAAGCAGAAAGAGCA 59.002 36.000 5.50 0.00 0.00 4.26
354 355 6.487689 ACAAAGTATACAAGCAGAAAGAGC 57.512 37.500 5.50 0.00 0.00 4.09
355 356 7.800380 CACAACAAAGTATACAAGCAGAAAGAG 59.200 37.037 5.50 0.00 0.00 2.85
356 357 7.497579 TCACAACAAAGTATACAAGCAGAAAGA 59.502 33.333 5.50 0.00 0.00 2.52
357 358 7.639039 TCACAACAAAGTATACAAGCAGAAAG 58.361 34.615 5.50 0.00 0.00 2.62
358 359 7.561021 TCACAACAAAGTATACAAGCAGAAA 57.439 32.000 5.50 0.00 0.00 2.52
359 360 7.066404 TGTTCACAACAAAGTATACAAGCAGAA 59.934 33.333 5.50 0.00 38.72 3.02
360 361 6.540551 TGTTCACAACAAAGTATACAAGCAGA 59.459 34.615 5.50 0.00 38.72 4.26
361 362 6.632834 GTGTTCACAACAAAGTATACAAGCAG 59.367 38.462 5.50 0.00 44.16 4.24
362 363 6.317642 AGTGTTCACAACAAAGTATACAAGCA 59.682 34.615 5.50 0.00 44.16 3.91
363 364 6.725246 AGTGTTCACAACAAAGTATACAAGC 58.275 36.000 5.50 0.00 44.16 4.01
364 365 7.915508 TGAGTGTTCACAACAAAGTATACAAG 58.084 34.615 5.50 0.00 44.16 3.16
365 366 7.851387 TGAGTGTTCACAACAAAGTATACAA 57.149 32.000 5.50 0.00 44.16 2.41
366 367 9.549078 TTATGAGTGTTCACAACAAAGTATACA 57.451 29.630 5.50 0.00 44.16 2.29
367 368 9.807386 GTTATGAGTGTTCACAACAAAGTATAC 57.193 33.333 5.74 0.00 44.16 1.47
368 369 9.549078 TGTTATGAGTGTTCACAACAAAGTATA 57.451 29.630 5.74 0.00 45.11 1.47
369 370 8.445275 TGTTATGAGTGTTCACAACAAAGTAT 57.555 30.769 5.74 0.00 45.11 2.12
370 371 7.851387 TGTTATGAGTGTTCACAACAAAGTA 57.149 32.000 5.74 0.00 45.11 2.24
371 372 6.751514 TGTTATGAGTGTTCACAACAAAGT 57.248 33.333 5.74 0.00 45.11 2.66
392 393 9.533831 AGTTGTTTCCCATAGAGAAAATAATGT 57.466 29.630 0.00 0.00 35.13 2.71
394 395 9.981460 AGAGTTGTTTCCCATAGAGAAAATAAT 57.019 29.630 0.00 0.00 35.13 1.28
395 396 9.807921 AAGAGTTGTTTCCCATAGAGAAAATAA 57.192 29.630 0.00 0.00 35.13 1.40
396 397 9.231297 CAAGAGTTGTTTCCCATAGAGAAAATA 57.769 33.333 0.00 0.00 35.13 1.40
397 398 7.177392 CCAAGAGTTGTTTCCCATAGAGAAAAT 59.823 37.037 0.00 0.00 35.13 1.82
398 399 6.490040 CCAAGAGTTGTTTCCCATAGAGAAAA 59.510 38.462 0.00 0.00 35.13 2.29
399 400 6.003950 CCAAGAGTTGTTTCCCATAGAGAAA 58.996 40.000 0.00 0.00 0.00 2.52
400 401 5.514834 CCCAAGAGTTGTTTCCCATAGAGAA 60.515 44.000 0.00 0.00 0.00 2.87
401 402 4.019321 CCCAAGAGTTGTTTCCCATAGAGA 60.019 45.833 0.00 0.00 0.00 3.10
402 403 4.019321 TCCCAAGAGTTGTTTCCCATAGAG 60.019 45.833 0.00 0.00 0.00 2.43
403 404 3.913799 TCCCAAGAGTTGTTTCCCATAGA 59.086 43.478 0.00 0.00 0.00 1.98
404 405 4.301072 TCCCAAGAGTTGTTTCCCATAG 57.699 45.455 0.00 0.00 0.00 2.23
405 406 4.733077 TTCCCAAGAGTTGTTTCCCATA 57.267 40.909 0.00 0.00 0.00 2.74
406 407 3.611025 TTCCCAAGAGTTGTTTCCCAT 57.389 42.857 0.00 0.00 0.00 4.00
407 408 3.496331 GATTCCCAAGAGTTGTTTCCCA 58.504 45.455 0.00 0.00 0.00 4.37
408 409 2.826128 GGATTCCCAAGAGTTGTTTCCC 59.174 50.000 0.00 0.00 0.00 3.97
409 410 3.507622 CAGGATTCCCAAGAGTTGTTTCC 59.492 47.826 0.00 0.00 33.88 3.13
410 411 4.398319 TCAGGATTCCCAAGAGTTGTTTC 58.602 43.478 0.00 0.00 33.88 2.78
411 412 4.453480 TCAGGATTCCCAAGAGTTGTTT 57.547 40.909 0.00 0.00 33.88 2.83
412 413 4.453480 TTCAGGATTCCCAAGAGTTGTT 57.547 40.909 0.00 0.00 33.88 2.83
413 414 4.453480 TTTCAGGATTCCCAAGAGTTGT 57.547 40.909 0.00 0.00 33.88 3.32
414 415 5.072741 TCTTTTCAGGATTCCCAAGAGTTG 58.927 41.667 0.00 0.00 33.88 3.16
415 416 5.324832 TCTTTTCAGGATTCCCAAGAGTT 57.675 39.130 0.00 0.00 33.88 3.01
416 417 5.163045 ACTTCTTTTCAGGATTCCCAAGAGT 60.163 40.000 0.00 1.54 33.88 3.24
417 418 5.182760 CACTTCTTTTCAGGATTCCCAAGAG 59.817 44.000 0.00 0.00 33.88 2.85
418 419 5.072741 CACTTCTTTTCAGGATTCCCAAGA 58.927 41.667 0.00 0.07 33.88 3.02
419 420 4.219288 CCACTTCTTTTCAGGATTCCCAAG 59.781 45.833 0.00 0.00 33.88 3.61
420 421 4.141041 TCCACTTCTTTTCAGGATTCCCAA 60.141 41.667 0.00 0.00 33.88 4.12
421 422 3.397618 TCCACTTCTTTTCAGGATTCCCA 59.602 43.478 0.00 0.00 33.88 4.37
422 423 4.034285 TCCACTTCTTTTCAGGATTCCC 57.966 45.455 0.00 0.00 0.00 3.97
423 424 6.350528 GGAATTCCACTTCTTTTCAGGATTCC 60.351 42.308 20.04 0.00 33.34 3.01
424 425 6.350528 GGGAATTCCACTTCTTTTCAGGATTC 60.351 42.308 25.67 0.00 37.91 2.52
425 426 5.481824 GGGAATTCCACTTCTTTTCAGGATT 59.518 40.000 25.67 0.00 37.91 3.01
426 427 5.019470 GGGAATTCCACTTCTTTTCAGGAT 58.981 41.667 25.67 0.00 37.91 3.24
427 428 4.407365 GGGAATTCCACTTCTTTTCAGGA 58.593 43.478 25.67 0.00 37.91 3.86
428 429 3.511540 GGGGAATTCCACTTCTTTTCAGG 59.488 47.826 25.67 0.00 36.20 3.86
429 430 4.790765 GGGGAATTCCACTTCTTTTCAG 57.209 45.455 25.67 0.00 36.20 3.02
439 440 2.042944 GGGGCAGGGGAATTCCAC 60.043 66.667 25.67 22.96 40.63 4.02
440 441 2.173299 TTGGGGCAGGGGAATTCCA 61.173 57.895 25.67 0.12 37.91 3.53
441 442 1.685765 GTTGGGGCAGGGGAATTCC 60.686 63.158 16.74 16.74 0.00 3.01
442 443 1.685765 GGTTGGGGCAGGGGAATTC 60.686 63.158 0.00 0.00 0.00 2.17
443 444 1.825277 ATGGTTGGGGCAGGGGAATT 61.825 55.000 0.00 0.00 0.00 2.17
444 445 2.255935 ATGGTTGGGGCAGGGGAAT 61.256 57.895 0.00 0.00 0.00 3.01
511 512 9.953565 AAATACTAGAACTAGCCAAAACATACA 57.046 29.630 8.54 0.00 36.66 2.29
579 580 3.126171 TGGATGTGCGCACAAAGTATAAC 59.874 43.478 43.14 25.73 45.41 1.89
599 600 1.467342 GACGAGACCCGGAATTTTTGG 59.533 52.381 0.73 0.00 43.93 3.28
601 602 2.423577 CTGACGAGACCCGGAATTTTT 58.576 47.619 0.73 0.00 43.93 1.94
609 610 1.655329 GATAGCCTGACGAGACCCG 59.345 63.158 0.00 0.00 45.44 5.28
686 693 5.481473 TGTTATTAGTGTTTACGAGGGTCCT 59.519 40.000 0.00 0.00 0.00 3.85
695 702 7.153217 AGCCCAACATGTTATTAGTGTTTAC 57.847 36.000 11.53 0.00 34.09 2.01
1129 1151 7.092716 GCCACACTTTCATTGATTTAGACAAT 58.907 34.615 0.00 0.00 38.30 2.71
1156 1178 4.503741 ACCTGTGGTTTCATTTGAATCG 57.496 40.909 0.00 0.00 33.54 3.34
1706 3913 4.498009 CGTTGAATATGCCCAAACCATCTC 60.498 45.833 0.00 0.00 0.00 2.75
1707 3914 3.381272 CGTTGAATATGCCCAAACCATCT 59.619 43.478 0.00 0.00 0.00 2.90
1719 3926 4.371786 TCTAGAGGCTTGCGTTGAATATG 58.628 43.478 0.00 0.00 0.00 1.78
1728 3935 0.529555 GGAGCTTCTAGAGGCTTGCG 60.530 60.000 27.95 0.00 44.18 4.85
1794 4001 2.262637 TGTCAAATTCGGTCTACCCCT 58.737 47.619 0.00 0.00 0.00 4.79
1827 4034 4.141824 CCAATCCCTCAGGTCTCTCTTAAC 60.142 50.000 0.00 0.00 0.00 2.01
1842 4049 4.111577 TCTTTGGTGATACTCCAATCCCT 58.888 43.478 6.20 0.00 43.25 4.20
1843 4050 4.503714 TCTTTGGTGATACTCCAATCCC 57.496 45.455 6.20 0.00 43.25 3.85
1867 4074 1.153086 GCACCCCTGTCCATAGCTG 60.153 63.158 0.00 0.00 0.00 4.24
1875 4082 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
1948 4155 5.420409 CAAACAAGTTAGGGTAGGCTAGAG 58.580 45.833 0.00 0.00 0.00 2.43
1953 4160 2.040679 TCCCAAACAAGTTAGGGTAGGC 59.959 50.000 0.00 0.00 42.12 3.93
1961 4168 5.056553 AGCCTTTAGTCCCAAACAAGTTA 57.943 39.130 0.00 0.00 0.00 2.24
1972 4179 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1974 4181 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
1976 4183 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
1977 4184 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
1978 4185 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
1980 4187 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
1981 4188 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
1982 4189 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
1983 4190 6.250819 CAACAACAACAACAACAACAACAAA 58.749 32.000 0.00 0.00 0.00 2.83
1984 4191 5.727791 GCAACAACAACAACAACAACAACAA 60.728 36.000 0.00 0.00 0.00 2.83
1985 4192 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
1986 4193 4.025313 AGCAACAACAACAACAACAACAAC 60.025 37.500 0.00 0.00 0.00 3.32
1987 4194 4.122776 AGCAACAACAACAACAACAACAA 58.877 34.783 0.00 0.00 0.00 2.83
1988 4195 3.722147 AGCAACAACAACAACAACAACA 58.278 36.364 0.00 0.00 0.00 3.33
1989 4196 4.453339 CAAGCAACAACAACAACAACAAC 58.547 39.130 0.00 0.00 0.00 3.32
1990 4197 3.059325 GCAAGCAACAACAACAACAACAA 60.059 39.130 0.00 0.00 0.00 2.83
1991 4198 2.478134 GCAAGCAACAACAACAACAACA 59.522 40.909 0.00 0.00 0.00 3.33
1992 4199 2.736192 AGCAAGCAACAACAACAACAAC 59.264 40.909 0.00 0.00 0.00 3.32
1993 4200 3.037431 AGCAAGCAACAACAACAACAA 57.963 38.095 0.00 0.00 0.00 2.83
1994 4201 2.739885 AGCAAGCAACAACAACAACA 57.260 40.000 0.00 0.00 0.00 3.33
1995 4202 3.424697 CCAAAGCAAGCAACAACAACAAC 60.425 43.478 0.00 0.00 0.00 3.32
1996 4203 2.740981 CCAAAGCAAGCAACAACAACAA 59.259 40.909 0.00 0.00 0.00 2.83
1997 4204 2.289320 ACCAAAGCAAGCAACAACAACA 60.289 40.909 0.00 0.00 0.00 3.33
1998 4205 2.094099 CACCAAAGCAAGCAACAACAAC 59.906 45.455 0.00 0.00 0.00 3.32
1999 4206 2.028658 TCACCAAAGCAAGCAACAACAA 60.029 40.909 0.00 0.00 0.00 2.83
2000 4207 1.547820 TCACCAAAGCAAGCAACAACA 59.452 42.857 0.00 0.00 0.00 3.33
2043 4250 7.170489 CACATGGCAGTATCTACATTGTAGAAG 59.830 40.741 25.91 17.69 0.00 2.85
2133 4341 9.736414 ATTCATGCATAAGAAATATCTAGCACT 57.264 29.630 0.00 0.00 39.39 4.40
3034 7490 9.715121 ATATACTGTTAAAGTTTGTTCGAAGGA 57.285 29.630 0.00 0.00 40.56 3.36
3040 7496 8.051901 AGGGCATATACTGTTAAAGTTTGTTC 57.948 34.615 0.00 0.00 40.56 3.18
3170 7629 8.277490 TCTACGTAGAGTGATTGTTTGACTAT 57.723 34.615 21.25 0.00 0.00 2.12
3354 7813 2.578021 AGGCACTGGTATTTCCATCTGT 59.422 45.455 0.00 0.00 46.12 3.41
3391 7850 4.831107 AGCACACTTGACATTTTGGTTTT 58.169 34.783 0.00 0.00 0.00 2.43
3392 7851 4.470334 AGCACACTTGACATTTTGGTTT 57.530 36.364 0.00 0.00 0.00 3.27
3547 8006 0.823769 TTGCAACCCCGCACATGTTA 60.824 50.000 0.00 0.00 42.87 2.41
3548 8007 1.470996 ATTGCAACCCCGCACATGTT 61.471 50.000 0.00 0.00 42.87 2.71
3549 8008 0.610509 TATTGCAACCCCGCACATGT 60.611 50.000 0.00 0.00 42.87 3.21
3693 8253 2.040412 ACCTTTAGTTCCCAAGAGCCAG 59.960 50.000 0.00 0.00 0.00 4.85
3981 8589 8.764524 ACTAACTGCAAAACAATACAAACAAA 57.235 26.923 0.00 0.00 0.00 2.83
4235 8844 5.068460 AGGCACACATAAACAAGCTACAAAA 59.932 36.000 0.00 0.00 0.00 2.44
4260 8869 1.218844 ACACCCTACCAAACACACCT 58.781 50.000 0.00 0.00 0.00 4.00
5002 10568 0.031857 TTGTTGTTTGGCAGCGATGG 59.968 50.000 1.46 0.00 0.00 3.51
5077 10668 1.420138 ACTCCTAGGGTGTGTTTGGTG 59.580 52.381 9.46 0.00 0.00 4.17
5095 10686 0.886563 GTGCAGTACTGTACGGGACT 59.113 55.000 26.40 14.27 40.76 3.85
5192 10792 9.740710 ACTTGAAAGGCTTTATCAGTACTTTAT 57.259 29.630 13.37 0.00 34.15 1.40
5193 10793 9.569122 AACTTGAAAGGCTTTATCAGTACTTTA 57.431 29.630 13.37 0.00 34.15 1.85
5194 10794 8.465273 AACTTGAAAGGCTTTATCAGTACTTT 57.535 30.769 13.37 0.00 35.68 2.66
5195 10795 9.740710 ATAACTTGAAAGGCTTTATCAGTACTT 57.259 29.630 13.37 3.61 0.00 2.24
5196 10796 9.384764 GATAACTTGAAAGGCTTTATCAGTACT 57.615 33.333 13.37 6.15 31.96 2.73
5197 10797 9.384764 AGATAACTTGAAAGGCTTTATCAGTAC 57.615 33.333 13.37 9.73 33.41 2.73
5201 10801 9.905713 ACATAGATAACTTGAAAGGCTTTATCA 57.094 29.630 13.37 4.88 33.41 2.15
5220 10820 9.433153 CACATGACTATAATCTGCAACATAGAT 57.567 33.333 0.00 0.00 36.49 1.98
5295 10895 7.293535 AGGAATATCACCAAAGAACTAGCCTAT 59.706 37.037 0.00 0.00 0.00 2.57
5412 11050 3.130516 GTCCAACATCGTCTGAGATGGTA 59.869 47.826 16.20 0.00 45.90 3.25
5481 11119 3.264450 AGAAAAGATCAGGTCCGGAATGT 59.736 43.478 5.23 0.00 0.00 2.71
5625 13973 4.546570 CACAAAAGCTAAAAGGCAGGTAC 58.453 43.478 0.00 0.00 34.17 3.34
5626 13974 3.572255 CCACAAAAGCTAAAAGGCAGGTA 59.428 43.478 0.00 0.00 34.17 3.08
5717 14065 4.441695 TGAGCTGCGAGAAGGCCG 62.442 66.667 0.00 0.00 0.00 6.13
5738 14086 3.148279 CCGGGGAGGAGAGGTTCG 61.148 72.222 0.00 0.00 45.00 3.95
5767 14115 0.671472 TGCGTCTCACCATCTTGCTG 60.671 55.000 0.00 0.00 0.00 4.41
5814 14162 0.249911 GTATCCGAGGATGGTGCCAC 60.250 60.000 14.50 0.23 36.17 5.01
5815 14163 0.689412 TGTATCCGAGGATGGTGCCA 60.689 55.000 14.50 0.00 36.17 4.92
5866 14214 2.202663 TCGATCTGCAGCAGCGAC 60.203 61.111 18.43 9.95 46.23 5.19
5873 14221 1.617018 TTCACCCCCTCGATCTGCAG 61.617 60.000 7.63 7.63 0.00 4.41
5917 14265 4.802051 GCCATCCTCTTGCCGCCA 62.802 66.667 0.00 0.00 0.00 5.69
5938 14286 0.320374 TGGTCTTGGCCTTGTAGACG 59.680 55.000 3.32 0.00 39.30 4.18
5966 14314 3.137533 GAGTCAAAGCTAGATGGATGCC 58.862 50.000 0.00 0.00 0.00 4.40
5967 14315 2.799412 CGAGTCAAAGCTAGATGGATGC 59.201 50.000 0.00 0.00 0.00 3.91
6044 14392 2.313317 ACCTCAGAAGTACACGTTCCA 58.687 47.619 0.00 0.00 0.00 3.53
6046 14394 3.254166 TGGTACCTCAGAAGTACACGTTC 59.746 47.826 14.36 0.00 41.55 3.95
6049 14397 2.413765 CGTGGTACCTCAGAAGTACACG 60.414 54.545 14.36 12.97 41.55 4.49
6346 14725 9.226606 ACACTGATGACTTTCCGATTAAAATAA 57.773 29.630 0.00 0.00 0.00 1.40
6440 14819 1.276989 TGGCCCTACAAAGTCCTAACG 59.723 52.381 0.00 0.00 0.00 3.18
6457 14845 0.029834 GCGGAATGTCATGTGATGGC 59.970 55.000 0.00 0.00 34.88 4.40
6461 14849 0.533032 TACCGCGGAATGTCATGTGA 59.467 50.000 35.90 0.00 0.00 3.58
6502 14890 3.440173 CCTACACATGGTGTTCATTGACC 59.560 47.826 7.37 0.00 45.08 4.02
6518 14907 3.075148 GGAGCAAAAGAAGGACCTACAC 58.925 50.000 0.00 0.00 0.00 2.90
6527 14916 5.584251 GGAGAGATACAAGGAGCAAAAGAAG 59.416 44.000 0.00 0.00 0.00 2.85
6528 14917 5.013079 TGGAGAGATACAAGGAGCAAAAGAA 59.987 40.000 0.00 0.00 0.00 2.52
6529 14918 4.532126 TGGAGAGATACAAGGAGCAAAAGA 59.468 41.667 0.00 0.00 0.00 2.52
6626 15019 4.092237 CACCGCGTAAGATAAATGACAACA 59.908 41.667 4.92 0.00 43.02 3.33
6636 15032 2.658373 TTTGAGCACCGCGTAAGATA 57.342 45.000 4.92 0.00 43.02 1.98
6637 15033 1.803334 TTTTGAGCACCGCGTAAGAT 58.197 45.000 4.92 0.00 43.02 2.40
6643 15039 0.798776 AGAGAATTTTGAGCACCGCG 59.201 50.000 0.00 0.00 0.00 6.46
6655 15051 4.015084 CAATGAAGCTGTGGGAGAGAATT 58.985 43.478 0.00 0.00 0.00 2.17
6667 15068 4.201657 TGATGACCCATACAATGAAGCTG 58.798 43.478 0.00 0.00 0.00 4.24
6773 15175 4.998671 TTTCAGGAAAACAACATGCTCA 57.001 36.364 0.00 0.00 0.00 4.26
6825 15227 1.608717 GGCCTCGGAGACAGTGATGT 61.609 60.000 6.58 0.00 0.00 3.06
6826 15228 1.142748 GGCCTCGGAGACAGTGATG 59.857 63.158 6.58 0.00 0.00 3.07
6850 15254 2.435372 TTGTATCCCCATTGAGGTGC 57.565 50.000 0.00 0.00 34.66 5.01
6943 15352 3.889538 TGGATGATTCCTTCGACGATACT 59.110 43.478 0.00 0.00 43.07 2.12
6949 15367 3.861840 TGAACTGGATGATTCCTTCGAC 58.138 45.455 0.00 0.00 43.07 4.20
6952 15370 6.956202 ATCATTGAACTGGATGATTCCTTC 57.044 37.500 0.00 0.00 43.07 3.46
7007 15466 2.772287 CTTCTGGTGAAGGACAAGGAC 58.228 52.381 0.00 0.00 44.33 3.85
7137 15597 0.708209 TGCCAGGACCTCTACCAGTA 59.292 55.000 0.00 0.00 0.00 2.74
7138 15598 0.905337 GTGCCAGGACCTCTACCAGT 60.905 60.000 0.00 0.00 0.00 4.00
7255 15716 7.756722 ACTCAACTTTTCATTCAAGAACACTTG 59.243 33.333 0.00 0.00 41.38 3.16
7356 15822 1.686325 GGCTCTTCGGGGATGTAGCA 61.686 60.000 0.00 0.00 0.00 3.49
7357 15823 1.069935 GGCTCTTCGGGGATGTAGC 59.930 63.158 0.00 0.00 0.00 3.58
7603 16070 4.088634 ACTTACACCATTGGAACATGCAT 58.911 39.130 10.37 0.00 39.30 3.96
7927 16394 5.483811 TCCAGCACGTAAAATTAGACATCA 58.516 37.500 0.00 0.00 0.00 3.07
7942 16409 1.071471 ACCCAAGAGTTCCAGCACG 59.929 57.895 0.00 0.00 0.00 5.34
7996 16463 8.629158 ACAGTTCAACATAAAAGTAGCATCAAA 58.371 29.630 0.00 0.00 0.00 2.69
8021 16488 8.679100 ACAAGATGTTCTGTGAGTATACTCTAC 58.321 37.037 28.53 23.67 43.25 2.59
8070 16538 3.819564 TCCGAACACCATAATCCTGAG 57.180 47.619 0.00 0.00 0.00 3.35
8123 16592 3.488778 TTGCCTTGCCAAATTTGACAT 57.511 38.095 19.86 0.00 0.00 3.06
8236 16705 6.989155 TTGAAGTACTACCTTGAGAGGAAA 57.011 37.500 0.00 0.00 46.74 3.13
8420 18197 2.670905 TGTGTCAGTCAACAAGAACACG 59.329 45.455 0.00 0.00 0.00 4.49
8541 18319 3.485394 TGCAGTTTGACAAGAGGCATTA 58.515 40.909 5.85 0.00 0.00 1.90
8550 18328 1.545428 CCTAGGGCTGCAGTTTGACAA 60.545 52.381 16.64 0.00 0.00 3.18
8654 18451 0.674895 AACATCTTCCGCAGACAGCC 60.675 55.000 0.00 0.00 41.38 4.85
8664 18461 1.087501 GACGGCCAAGAACATCTTCC 58.912 55.000 2.24 0.00 33.78 3.46
8718 18515 2.943036 ACGTTACATCAACTGGGGTT 57.057 45.000 0.00 0.00 34.77 4.11
8719 18516 2.882137 CAAACGTTACATCAACTGGGGT 59.118 45.455 0.00 0.00 34.77 4.95
8721 18518 4.286910 CAACAAACGTTACATCAACTGGG 58.713 43.478 0.00 0.00 34.77 4.45
8817 20644 4.433615 GAGACCGACTGCATCAAAAGATA 58.566 43.478 0.00 0.00 0.00 1.98
8903 20730 2.295885 GCAAAGAGGTCTGCAGCATAT 58.704 47.619 9.47 0.00 38.48 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.