Multiple sequence alignment - TraesCS2D01G300000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G300000 chr2D 100.000 2681 0 0 1 2681 382178811 382181491 0.000000e+00 4951
1 TraesCS2D01G300000 chr2D 81.944 144 25 1 2177 2320 11162387 11162245 1.300000e-23 121
2 TraesCS2D01G300000 chr2A 91.995 1749 76 12 1 1724 516430697 516432406 0.000000e+00 2396
3 TraesCS2D01G300000 chr2A 87.273 495 45 10 1968 2457 516433458 516433939 1.400000e-152 549
4 TraesCS2D01G300000 chr2A 92.500 240 9 4 1722 1956 516432487 516432722 4.280000e-88 335
5 TraesCS2D01G300000 chr2A 79.675 246 26 14 2450 2675 516452263 516452504 3.570000e-34 156
6 TraesCS2D01G300000 chr2A 82.707 133 23 0 2188 2320 29159205 29159073 4.690000e-23 119
7 TraesCS2D01G300000 chr2B 93.894 1212 56 5 563 1764 453030761 453031964 0.000000e+00 1812
8 TraesCS2D01G300000 chr2B 93.148 540 30 5 1 535 453030223 453030760 0.000000e+00 785
9 TraesCS2D01G300000 chr2B 84.303 739 72 16 1977 2681 453043305 453044033 0.000000e+00 682
10 TraesCS2D01G300000 chr7D 85.315 143 21 0 2178 2320 37793962 37794104 5.980000e-32 148
11 TraesCS2D01G300000 chr3D 84.397 141 22 0 2180 2320 25405078 25404938 3.600000e-29 139
12 TraesCS2D01G300000 chr7B 81.208 149 27 1 2172 2320 271253719 271253572 4.690000e-23 119
13 TraesCS2D01G300000 chr1D 81.560 141 24 2 2181 2320 23973921 23973782 6.070000e-22 115
14 TraesCS2D01G300000 chr6D 79.042 167 33 2 2156 2320 12329296 12329462 2.180000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G300000 chr2D 382178811 382181491 2680 False 4951.000000 4951 100.000000 1 2681 1 chr2D.!!$F1 2680
1 TraesCS2D01G300000 chr2A 516430697 516433939 3242 False 1093.333333 2396 90.589333 1 2457 3 chr2A.!!$F2 2456
2 TraesCS2D01G300000 chr2B 453030223 453031964 1741 False 1298.500000 1812 93.521000 1 1764 2 chr2B.!!$F2 1763
3 TraesCS2D01G300000 chr2B 453043305 453044033 728 False 682.000000 682 84.303000 1977 2681 1 chr2B.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 459 0.039074 ACGGCGTTCTCTTCTCACAG 60.039 55.000 6.77 0.0 0.0 3.66 F
957 978 1.211949 AGTACCACAGTGCAACCAACT 59.788 47.619 0.00 0.0 37.8 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1279 0.179100 CCGCCAGTGTAGTCATCAGG 60.179 60.0 0.00 0.0 0.0 3.86 R
2648 3525 0.037975 TCCCGGAGTGTAGCGTTTTC 60.038 55.0 0.73 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.210430 TGGATGCCCATCAGAATAATTGTT 58.790 37.500 10.17 0.00 39.54 2.83
114 115 1.837439 TGTCCTCCATTAATGAGCCGT 59.163 47.619 17.23 0.00 0.00 5.68
143 144 6.153000 GTCTATTCCTGTCAGACACCTTTCTA 59.847 42.308 0.00 0.00 38.82 2.10
153 154 4.989168 CAGACACCTTTCTACTTAAAGCGT 59.011 41.667 0.00 0.00 35.53 5.07
169 170 4.503741 AAGCGTGTGTTGCTGATAATTT 57.496 36.364 0.00 0.00 43.14 1.82
229 234 8.019669 CCAAAGAAAGATCTTATGTGTCAACAG 58.980 37.037 8.75 0.00 45.19 3.16
238 243 7.421530 TCTTATGTGTCAACAGTTTTCTAGC 57.578 36.000 0.00 0.00 40.39 3.42
254 259 7.984617 AGTTTTCTAGCTGAAGGATATTCTGTC 59.015 37.037 0.00 0.00 35.89 3.51
270 275 2.760650 TCTGTCTCGCATGGTATTCACT 59.239 45.455 0.00 0.00 0.00 3.41
304 309 7.954248 GCGTGTATACTGAATTCATGATTGATC 59.046 37.037 8.96 0.00 0.00 2.92
403 420 1.271379 CTGATGCTGCACCATGTGTTT 59.729 47.619 3.57 0.00 35.75 2.83
404 421 1.687660 TGATGCTGCACCATGTGTTTT 59.312 42.857 3.57 0.00 35.75 2.43
427 444 5.160641 TGAATGAGCTTTTATTTTCACGGC 58.839 37.500 0.00 0.00 0.00 5.68
442 459 0.039074 ACGGCGTTCTCTTCTCACAG 60.039 55.000 6.77 0.00 0.00 3.66
490 507 9.642327 TTGTTTTCCCTTTTAGAACAGTTAAAC 57.358 29.630 0.00 0.00 32.50 2.01
589 606 3.543680 ATGAACTTGATGTAGGACCCG 57.456 47.619 0.00 0.00 0.00 5.28
605 622 1.990327 ACCCGTCCTTTCAATAAGGGT 59.010 47.619 3.88 0.00 45.02 4.34
608 625 3.203716 CCGTCCTTTCAATAAGGGTAGC 58.796 50.000 3.88 0.00 37.99 3.58
728 749 3.340814 TTGTTTTTGTGGGCACATGTT 57.659 38.095 0.00 0.00 41.52 2.71
729 750 4.471904 TTGTTTTTGTGGGCACATGTTA 57.528 36.364 0.00 0.00 41.52 2.41
736 757 2.485122 GGCACATGTTACTGCGGC 59.515 61.111 0.00 0.00 33.94 6.53
814 835 8.150945 AGAAGAAGTGCTTTCAGTCATTAAGTA 58.849 33.333 4.71 0.00 38.31 2.24
930 951 7.192232 CGCTATAAATACCTCCTACCGTATTC 58.808 42.308 0.00 0.00 34.78 1.75
956 977 1.675552 AGTACCACAGTGCAACCAAC 58.324 50.000 0.00 0.00 37.80 3.77
957 978 1.211949 AGTACCACAGTGCAACCAACT 59.788 47.619 0.00 0.00 37.80 3.16
980 1001 4.060900 AGCTACTTGTGTTCTGTGTGATG 58.939 43.478 0.00 0.00 0.00 3.07
1007 1028 8.464404 CATTTCTCTTTATTTTGAGATGGCAGA 58.536 33.333 0.00 0.00 38.85 4.26
1248 1269 1.549203 ATTTCACTGGCGGCTTGAAT 58.451 45.000 21.38 12.25 0.00 2.57
1468 1489 2.266055 CAAGCACCGAGGACTCCC 59.734 66.667 0.00 0.00 0.00 4.30
1527 1548 1.606313 CGGCAAGAACACCCCCAAT 60.606 57.895 0.00 0.00 0.00 3.16
1539 1560 4.307259 ACACCCCCAATACTGATGACTAT 58.693 43.478 0.00 0.00 0.00 2.12
1662 1692 2.919856 ACTGGTGCAGGCGAGACT 60.920 61.111 0.00 0.00 35.51 3.24
1740 1853 7.549842 TGCTAAATACGTATGTATGTGTGGTTT 59.450 33.333 9.24 0.00 40.42 3.27
1741 1854 7.849026 GCTAAATACGTATGTATGTGTGGTTTG 59.151 37.037 9.24 1.37 40.42 2.93
1806 1923 3.791953 TTTTCTTTATGGTGGGGTCGA 57.208 42.857 0.00 0.00 0.00 4.20
1808 1925 3.553828 TTCTTTATGGTGGGGTCGATC 57.446 47.619 0.00 0.00 0.00 3.69
1878 1996 4.142337 TGAGTGTGTATATGTACCCGTGTG 60.142 45.833 0.00 0.00 0.00 3.82
1879 1997 3.765511 AGTGTGTATATGTACCCGTGTGT 59.234 43.478 0.00 0.00 0.00 3.72
1880 1998 4.949238 AGTGTGTATATGTACCCGTGTGTA 59.051 41.667 0.00 0.00 0.00 2.90
1881 1999 5.595542 AGTGTGTATATGTACCCGTGTGTAT 59.404 40.000 0.00 0.00 0.00 2.29
1882 2000 5.688621 GTGTGTATATGTACCCGTGTGTATG 59.311 44.000 0.00 0.00 0.00 2.39
1910 2028 0.178767 TTGCTGTCCATCTATGCGCT 59.821 50.000 9.73 0.00 0.00 5.92
1964 2368 8.870116 TGTCTGTAGCTGGACATATGTATAAAT 58.130 33.333 8.71 0.00 37.52 1.40
1971 2813 9.712305 AGCTGGACATATGTATAAATAGTTGAC 57.288 33.333 8.71 0.00 0.00 3.18
2092 2935 4.404691 TGTGCAACCACACACACA 57.595 50.000 0.00 0.00 46.51 3.72
2093 2936 1.879480 TGTGCAACCACACACACAC 59.121 52.632 0.00 0.00 46.51 3.82
2183 3026 9.430399 AATCTTGAAAATGATCATTGGAGGTAT 57.570 29.630 21.39 9.17 0.00 2.73
2335 3178 9.080915 CATCGATGACATCACTTATAGTTATGG 57.919 37.037 21.02 0.00 34.89 2.74
2375 3226 6.510879 AAGTATAGGCTTACCAAACAAAGC 57.489 37.500 0.00 0.00 45.88 3.51
2379 3230 2.766970 GCTTACCAAACAAAGCGTGA 57.233 45.000 0.00 0.00 38.80 4.35
2418 3269 4.883585 CCAGCAATGACTTGGTATACATGT 59.116 41.667 2.69 2.69 41.01 3.21
2437 3288 6.970484 ACATGTTCTACAGGTCAAAAATGAC 58.030 36.000 0.00 0.36 39.01 3.06
2446 3297 4.023193 CAGGTCAAAAATGACGCCTTACTT 60.023 41.667 3.15 0.00 39.57 2.24
2448 3299 5.766174 AGGTCAAAAATGACGCCTTACTTAA 59.234 36.000 3.15 0.00 39.57 1.85
2450 3301 7.039993 AGGTCAAAAATGACGCCTTACTTAATT 60.040 33.333 3.15 0.00 39.57 1.40
2493 3344 8.044908 TCCTATAGAGAATGGTGTTTGGTAAAC 58.955 37.037 0.00 0.00 41.73 2.01
2501 3352 2.626266 GGTGTTTGGTAAACCCTCTTGG 59.374 50.000 0.00 0.00 40.67 3.61
2526 3377 7.102993 GGCAAAAGATATTTGGGCTCTAAAAA 58.897 34.615 6.51 0.00 0.00 1.94
2589 3466 4.151883 TGGGCTGAACTATTTTCTGCTTT 58.848 39.130 13.42 0.00 41.29 3.51
2590 3467 4.022068 TGGGCTGAACTATTTTCTGCTTTG 60.022 41.667 13.42 0.00 41.29 2.77
2603 3480 1.206831 GCTTTGGTTCCTTCGCGAC 59.793 57.895 9.15 0.00 0.00 5.19
2604 3481 1.228657 GCTTTGGTTCCTTCGCGACT 61.229 55.000 9.15 0.00 0.00 4.18
2619 3496 0.809385 CGACTAAGGACGCCTCTGAA 59.191 55.000 0.00 0.00 30.89 3.02
2631 3508 1.336755 GCCTCTGAAAACCGCTTTTGA 59.663 47.619 0.00 0.00 29.21 2.69
2646 3523 4.508124 CGCTTTTGAGAGTACAAGTGTCTT 59.492 41.667 0.00 0.00 0.00 3.01
2648 3525 5.277538 GCTTTTGAGAGTACAAGTGTCTTGG 60.278 44.000 12.95 0.00 0.00 3.61
2649 3526 5.607939 TTTGAGAGTACAAGTGTCTTGGA 57.392 39.130 12.95 2.67 0.00 3.53
2662 3539 3.059800 GTGTCTTGGAAAACGCTACACTC 60.060 47.826 0.00 0.00 34.41 3.51
2669 3546 0.320160 AAACGCTACACTCCGGGAAC 60.320 55.000 0.00 0.00 0.00 3.62
2676 3553 2.233305 ACACTCCGGGAACAGTATCT 57.767 50.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 2.285083 TCAGCAACACACGCTTTAAGT 58.715 42.857 0.00 0.00 37.72 2.24
153 154 9.023962 AGAAATTCCTAAATTATCAGCAACACA 57.976 29.630 0.00 0.00 33.93 3.72
229 234 7.984617 AGACAGAATATCCTTCAGCTAGAAAAC 59.015 37.037 0.00 0.00 35.40 2.43
238 243 4.313277 TGCGAGACAGAATATCCTTCAG 57.687 45.455 0.00 0.00 0.00 3.02
254 259 3.185188 GCACATAGTGAATACCATGCGAG 59.815 47.826 0.58 0.00 35.23 5.03
270 275 4.379339 TTCAGTATACACGCAGCACATA 57.621 40.909 5.50 0.00 0.00 2.29
360 375 6.202762 CAGCACTACATGTACAGAAAAACTCA 59.797 38.462 0.08 0.00 0.00 3.41
364 379 6.348458 GCATCAGCACTACATGTACAGAAAAA 60.348 38.462 0.08 0.00 41.58 1.94
371 386 2.286294 GCAGCATCAGCACTACATGTAC 59.714 50.000 0.08 0.00 45.49 2.90
374 389 1.375551 TGCAGCATCAGCACTACATG 58.624 50.000 0.00 0.00 45.49 3.21
403 420 5.633182 GCCGTGAAAATAAAAGCTCATTCAA 59.367 36.000 0.00 0.00 0.00 2.69
404 421 5.160641 GCCGTGAAAATAAAAGCTCATTCA 58.839 37.500 0.00 0.00 0.00 2.57
442 459 6.093495 ACAAACCATACATAGCACACACATAC 59.907 38.462 0.00 0.00 0.00 2.39
447 464 6.398234 AAAACAAACCATACATAGCACACA 57.602 33.333 0.00 0.00 0.00 3.72
490 507 6.183360 TGCACTACAACTGTTAACTGTGAAAG 60.183 38.462 17.59 15.70 0.00 2.62
589 606 4.133013 TCGCTACCCTTATTGAAAGGAC 57.867 45.455 5.35 0.00 39.81 3.85
605 622 8.372459 ACTAAACATACATGGGAAATATCGCTA 58.628 33.333 0.00 0.00 39.17 4.26
608 625 8.836413 ACAACTAAACATACATGGGAAATATCG 58.164 33.333 0.00 0.00 0.00 2.92
709 730 3.449018 AGTAACATGTGCCCACAAAAACA 59.551 39.130 0.00 0.00 45.41 2.83
728 749 1.292223 GACAAGTGGAGCCGCAGTA 59.708 57.895 2.57 0.00 0.00 2.74
729 750 2.031163 GACAAGTGGAGCCGCAGT 59.969 61.111 2.57 0.58 0.00 4.40
736 757 2.105821 TGTAACCAAGGGACAAGTGGAG 59.894 50.000 0.00 0.00 36.23 3.86
814 835 9.647797 CAAAAATATGTGGCTAATATCATGCAT 57.352 29.630 0.00 0.00 0.00 3.96
839 860 3.009363 TCAGAACAAGGCTCCATCAATCA 59.991 43.478 0.00 0.00 0.00 2.57
930 951 3.678056 TGCACTGTGGTACTAAGAAGG 57.322 47.619 10.21 0.00 0.00 3.46
956 977 4.871513 TCACACAGAACACAAGTAGCTAG 58.128 43.478 0.00 0.00 0.00 3.42
957 978 4.929819 TCACACAGAACACAAGTAGCTA 57.070 40.909 0.00 0.00 0.00 3.32
980 1001 7.037438 TGCCATCTCAAAATAAAGAGAAATGC 58.963 34.615 0.00 0.00 43.47 3.56
1007 1028 1.343789 AGCTGCTGCGATCATACTCAT 59.656 47.619 10.14 0.00 45.42 2.90
1128 1149 3.243035 TGTCGTTGCTGGATTTGTTGAAG 60.243 43.478 0.00 0.00 0.00 3.02
1163 1184 1.259507 CCGTGTTGGTGTTCTTGTACG 59.740 52.381 0.00 0.00 0.00 3.67
1248 1269 6.040955 CAGTGTAGTCATCAGGGCTAGATTTA 59.959 42.308 0.00 0.00 0.00 1.40
1258 1279 0.179100 CCGCCAGTGTAGTCATCAGG 60.179 60.000 0.00 0.00 0.00 3.86
1468 1489 1.727857 GCTTGATTTGTTGTACGCGGG 60.728 52.381 12.47 0.00 0.00 6.13
1527 1548 3.066760 CACTGCCGTCATAGTCATCAGTA 59.933 47.826 0.00 0.00 32.73 2.74
1539 1560 1.301401 GTTGTAGCCACTGCCGTCA 60.301 57.895 0.00 0.00 38.69 4.35
1593 1623 1.900016 ACCACTGTACTCGTCGGCA 60.900 57.895 0.00 0.00 0.00 5.69
1657 1687 4.935352 AGTAATCATCAGAGCCAGTCTC 57.065 45.455 0.00 0.00 42.21 3.36
1662 1692 6.544928 TTTGTCTAGTAATCATCAGAGCCA 57.455 37.500 0.00 0.00 0.00 4.75
1740 1853 1.275291 GCAAGGACCAGTAGCAGTACA 59.725 52.381 0.00 0.00 0.00 2.90
1741 1854 1.550976 AGCAAGGACCAGTAGCAGTAC 59.449 52.381 0.00 0.00 0.00 2.73
1799 1916 6.096987 ACATCAGTATACATATGATCGACCCC 59.903 42.308 18.92 0.00 31.38 4.95
1804 1921 7.864882 GGGATCACATCAGTATACATATGATCG 59.135 40.741 18.92 10.65 41.27 3.69
1805 1922 8.699130 TGGGATCACATCAGTATACATATGATC 58.301 37.037 18.92 15.74 40.19 2.92
1806 1923 8.613922 TGGGATCACATCAGTATACATATGAT 57.386 34.615 18.92 10.97 34.02 2.45
1808 1925 8.883954 GATGGGATCACATCAGTATACATATG 57.116 38.462 29.26 10.25 45.11 1.78
1964 2368 9.884636 ACACATTTGCATAACTATAGTCAACTA 57.115 29.630 5.70 0.00 0.00 2.24
1965 2369 8.792830 ACACATTTGCATAACTATAGTCAACT 57.207 30.769 5.70 0.00 0.00 3.16
1966 2370 9.916397 GTACACATTTGCATAACTATAGTCAAC 57.084 33.333 5.70 0.00 0.00 3.18
2003 2845 3.949113 AGCACGAAAGGAAAAAGTTGGTA 59.051 39.130 0.00 0.00 0.00 3.25
2092 2935 3.545124 TTTGCCATGGAGACCGCGT 62.545 57.895 18.40 0.00 0.00 6.01
2093 2936 2.745884 TTTGCCATGGAGACCGCG 60.746 61.111 18.40 0.00 0.00 6.46
2218 3061 9.347934 GAAATGATCGTTCGATAGTTCATAGAT 57.652 33.333 7.69 0.24 37.40 1.98
2225 3068 3.489785 GCGGAAATGATCGTTCGATAGTT 59.510 43.478 11.70 3.74 37.40 2.24
2309 3152 9.080915 CCATAACTATAAGTGATGTCATCGATG 57.919 37.037 19.61 19.61 35.66 3.84
2310 3153 9.025041 TCCATAACTATAAGTGATGTCATCGAT 57.975 33.333 8.29 0.00 35.66 3.59
2353 3203 4.634443 CGCTTTGTTTGGTAAGCCTATACT 59.366 41.667 0.00 0.00 42.89 2.12
2354 3204 4.393990 ACGCTTTGTTTGGTAAGCCTATAC 59.606 41.667 0.00 0.00 42.89 1.47
2375 3226 3.243035 TGGTCTTTTGTCAGCAAATCACG 60.243 43.478 0.00 0.00 43.26 4.35
2399 3250 8.716646 TGTAGAACATGTATACCAAGTCATTG 57.283 34.615 15.08 0.00 36.09 2.82
2418 3269 3.500680 GGCGTCATTTTTGACCTGTAGAA 59.499 43.478 0.83 0.00 35.52 2.10
2457 3308 8.478877 CACCATTCTCTATAGGAAGTTTGTACT 58.521 37.037 0.00 0.00 35.68 2.73
2466 3317 6.636454 ACCAAACACCATTCTCTATAGGAA 57.364 37.500 0.00 3.24 0.00 3.36
2469 3320 7.282450 GGGTTTACCAAACACCATTCTCTATAG 59.718 40.741 0.69 0.00 43.15 1.31
2473 3324 4.141018 AGGGTTTACCAAACACCATTCTCT 60.141 41.667 0.69 0.00 45.96 3.10
2501 3352 5.852282 TTAGAGCCCAAATATCTTTTGCC 57.148 39.130 0.00 0.00 0.00 4.52
2526 3377 1.271597 CCCAGCTAGCCTCAAACACTT 60.272 52.381 12.13 0.00 0.00 3.16
2527 3378 0.326264 CCCAGCTAGCCTCAAACACT 59.674 55.000 12.13 0.00 0.00 3.55
2532 3383 3.313874 GCTCCCAGCTAGCCTCAA 58.686 61.111 12.13 0.00 38.45 3.02
2570 3428 5.126396 ACCAAAGCAGAAAATAGTTCAGC 57.874 39.130 0.00 0.00 0.00 4.26
2571 3429 6.015940 AGGAACCAAAGCAGAAAATAGTTCAG 60.016 38.462 0.00 0.00 35.27 3.02
2572 3430 5.833131 AGGAACCAAAGCAGAAAATAGTTCA 59.167 36.000 0.00 0.00 35.27 3.18
2573 3431 6.332735 AGGAACCAAAGCAGAAAATAGTTC 57.667 37.500 0.00 0.00 33.34 3.01
2575 3433 5.048713 CGAAGGAACCAAAGCAGAAAATAGT 60.049 40.000 0.00 0.00 0.00 2.12
2576 3434 5.393962 CGAAGGAACCAAAGCAGAAAATAG 58.606 41.667 0.00 0.00 0.00 1.73
2577 3435 4.320935 GCGAAGGAACCAAAGCAGAAAATA 60.321 41.667 0.00 0.00 0.00 1.40
2589 3466 0.245539 CCTTAGTCGCGAAGGAACCA 59.754 55.000 18.56 0.00 45.52 3.67
2590 3467 3.046280 CCTTAGTCGCGAAGGAACC 57.954 57.895 18.56 1.56 45.52 3.62
2603 3480 2.347731 GGTTTTCAGAGGCGTCCTTAG 58.652 52.381 2.06 0.00 31.76 2.18
2604 3481 1.337447 CGGTTTTCAGAGGCGTCCTTA 60.337 52.381 2.06 0.00 31.76 2.69
2619 3496 4.035208 CACTTGTACTCTCAAAAGCGGTTT 59.965 41.667 6.80 6.80 0.00 3.27
2631 3508 4.809426 CGTTTTCCAAGACACTTGTACTCT 59.191 41.667 9.99 0.00 0.00 3.24
2646 3523 0.320073 CCGGAGTGTAGCGTTTTCCA 60.320 55.000 0.00 0.00 0.00 3.53
2648 3525 0.037975 TCCCGGAGTGTAGCGTTTTC 60.038 55.000 0.73 0.00 0.00 2.29
2649 3526 0.393820 TTCCCGGAGTGTAGCGTTTT 59.606 50.000 0.73 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.