Multiple sequence alignment - TraesCS2D01G299500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G299500 chr2D 100.000 3594 0 0 1 3594 381866868 381870461 0.000000e+00 6637.0
1 TraesCS2D01G299500 chr2D 94.755 572 21 6 2998 3565 115919620 115920186 0.000000e+00 881.0
2 TraesCS2D01G299500 chr2D 94.128 579 21 9 2996 3567 155325348 155325920 0.000000e+00 869.0
3 TraesCS2D01G299500 chr2D 94.107 577 25 6 2996 3569 188261268 188261838 0.000000e+00 869.0
4 TraesCS2D01G299500 chr2D 77.602 442 77 17 20 453 476799334 476798907 7.710000e-62 248.0
5 TraesCS2D01G299500 chr2D 98.425 127 0 2 2749 2874 158283284 158283409 4.670000e-54 222.0
6 TraesCS2D01G299500 chr2D 78.415 366 56 18 260 610 568321185 568320828 2.170000e-52 217.0
7 TraesCS2D01G299500 chr2D 100.000 117 0 0 2757 2873 572692618 572692734 2.170000e-52 217.0
8 TraesCS2D01G299500 chr2B 94.886 2014 63 16 606 2600 452595436 452597428 0.000000e+00 3112.0
9 TraesCS2D01G299500 chr2B 78.641 618 85 31 1 610 452594397 452594975 2.040000e-97 366.0
10 TraesCS2D01G299500 chr2B 95.385 130 5 1 2744 2873 385566815 385566943 4.700000e-49 206.0
11 TraesCS2D01G299500 chr2B 93.860 114 7 0 2884 2997 452599747 452599860 4.770000e-39 172.0
12 TraesCS2D01G299500 chr2B 93.333 90 3 1 2670 2759 452599628 452599714 2.910000e-26 130.0
13 TraesCS2D01G299500 chr2B 88.608 79 9 0 2592 2670 452597579 452597657 2.950000e-16 97.1
14 TraesCS2D01G299500 chr2A 94.775 1952 61 15 840 2759 516238844 516240786 0.000000e+00 3001.0
15 TraesCS2D01G299500 chr2A 76.701 588 79 27 29 610 516237158 516237693 1.270000e-69 274.0
16 TraesCS2D01G299500 chr2A 78.947 342 55 15 117 453 758367176 758366847 2.170000e-52 217.0
17 TraesCS2D01G299500 chr2A 93.860 114 7 0 2884 2997 516240817 516240930 4.770000e-39 172.0
18 TraesCS2D01G299500 chr4D 94.974 577 20 7 2997 3569 267025193 267025764 0.000000e+00 896.0
19 TraesCS2D01G299500 chr4D 94.965 576 16 8 2997 3565 398890009 398889440 0.000000e+00 891.0
20 TraesCS2D01G299500 chr4D 78.502 414 66 20 29 434 386496779 386496381 2.140000e-62 250.0
21 TraesCS2D01G299500 chr4D 83.133 83 14 0 2235 2317 441077963 441078045 3.850000e-10 76.8
22 TraesCS2D01G299500 chr5A 94.271 576 19 10 2997 3565 180807706 180807138 0.000000e+00 869.0
23 TraesCS2D01G299500 chr1A 94.271 576 20 9 2997 3565 173644009 173643440 0.000000e+00 869.0
24 TraesCS2D01G299500 chr1A 93.515 586 24 9 2987 3565 175379685 175379107 0.000000e+00 859.0
25 TraesCS2D01G299500 chr1B 93.401 591 23 12 2997 3580 328272245 328271664 0.000000e+00 861.0
26 TraesCS2D01G299500 chr5B 85.657 753 99 6 1815 2558 565533105 565532353 0.000000e+00 784.0
27 TraesCS2D01G299500 chr5B 77.805 401 66 17 8 400 648632542 648632927 3.610000e-55 226.0
28 TraesCS2D01G299500 chr5B 94.203 138 5 3 2737 2873 331247352 331247217 1.310000e-49 207.0
29 TraesCS2D01G299500 chr5B 91.837 49 4 0 451 499 562360725 562360773 6.440000e-08 69.4
30 TraesCS2D01G299500 chr5D 85.053 756 100 7 1815 2558 460087818 460087064 0.000000e+00 758.0
31 TraesCS2D01G299500 chr5D 82.143 252 31 7 1044 1291 460088590 460088349 1.690000e-48 204.0
32 TraesCS2D01G299500 chr5D 85.000 80 9 2 451 528 458733186 458733264 1.070000e-10 78.7
33 TraesCS2D01G299500 chr7D 82.200 500 83 6 2062 2558 89306862 89307358 3.320000e-115 425.0
34 TraesCS2D01G299500 chr7D 94.615 130 5 2 2757 2886 64732152 64732025 2.190000e-47 200.0
35 TraesCS2D01G299500 chr7D 93.431 137 6 3 2740 2874 607738314 607738179 2.190000e-47 200.0
36 TraesCS2D01G299500 chr7D 82.051 234 40 2 1058 1290 89305582 89305814 7.870000e-47 198.0
37 TraesCS2D01G299500 chr6B 76.238 505 94 21 29 523 676680546 676680058 9.970000e-61 244.0
38 TraesCS2D01G299500 chr6B 75.888 535 96 23 1 523 720131416 720131929 3.590000e-60 243.0
39 TraesCS2D01G299500 chr6B 96.154 130 5 0 2747 2876 343032977 343032848 2.810000e-51 213.0
40 TraesCS2D01G299500 chrUn 99.194 124 1 0 2753 2876 100620883 100620760 1.300000e-54 224.0
41 TraesCS2D01G299500 chr4A 79.268 328 57 11 29 351 67987282 67986961 6.040000e-53 219.0
42 TraesCS2D01G299500 chr4A 83.908 87 12 2 2235 2320 26544869 26544784 8.270000e-12 82.4
43 TraesCS2D01G299500 chr4A 82.558 86 15 0 2235 2320 26541468 26541383 3.850000e-10 76.8
44 TraesCS2D01G299500 chr3B 97.600 125 3 0 2752 2876 725714308 725714432 7.820000e-52 215.0
45 TraesCS2D01G299500 chr7B 81.176 255 42 6 1045 1294 40258795 40259048 2.190000e-47 200.0
46 TraesCS2D01G299500 chr4B 87.143 70 9 0 2235 2304 546820605 546820674 2.970000e-11 80.5
47 TraesCS2D01G299500 chr4B 94.737 38 1 1 2705 2741 14386392 14386429 1.390000e-04 58.4
48 TraesCS2D01G299500 chr3D 93.478 46 3 0 2696 2741 463115363 463115408 6.440000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G299500 chr2D 381866868 381870461 3593 False 6637.00 6637 100.000000 1 3594 1 chr2D.!!$F5 3593
1 TraesCS2D01G299500 chr2D 115919620 115920186 566 False 881.00 881 94.755000 2998 3565 1 chr2D.!!$F1 567
2 TraesCS2D01G299500 chr2D 155325348 155325920 572 False 869.00 869 94.128000 2996 3567 1 chr2D.!!$F2 571
3 TraesCS2D01G299500 chr2D 188261268 188261838 570 False 869.00 869 94.107000 2996 3569 1 chr2D.!!$F4 573
4 TraesCS2D01G299500 chr2B 452594397 452599860 5463 False 775.42 3112 89.865600 1 2997 5 chr2B.!!$F2 2996
5 TraesCS2D01G299500 chr2A 516237158 516240930 3772 False 1149.00 3001 88.445333 29 2997 3 chr2A.!!$F1 2968
6 TraesCS2D01G299500 chr4D 267025193 267025764 571 False 896.00 896 94.974000 2997 3569 1 chr4D.!!$F1 572
7 TraesCS2D01G299500 chr4D 398889440 398890009 569 True 891.00 891 94.965000 2997 3565 1 chr4D.!!$R2 568
8 TraesCS2D01G299500 chr5A 180807138 180807706 568 True 869.00 869 94.271000 2997 3565 1 chr5A.!!$R1 568
9 TraesCS2D01G299500 chr1A 173643440 173644009 569 True 869.00 869 94.271000 2997 3565 1 chr1A.!!$R1 568
10 TraesCS2D01G299500 chr1A 175379107 175379685 578 True 859.00 859 93.515000 2987 3565 1 chr1A.!!$R2 578
11 TraesCS2D01G299500 chr1B 328271664 328272245 581 True 861.00 861 93.401000 2997 3580 1 chr1B.!!$R1 583
12 TraesCS2D01G299500 chr5B 565532353 565533105 752 True 784.00 784 85.657000 1815 2558 1 chr5B.!!$R2 743
13 TraesCS2D01G299500 chr5D 460087064 460088590 1526 True 481.00 758 83.598000 1044 2558 2 chr5D.!!$R1 1514
14 TraesCS2D01G299500 chr7D 89305582 89307358 1776 False 311.50 425 82.125500 1058 2558 2 chr7D.!!$F1 1500
15 TraesCS2D01G299500 chr6B 720131416 720131929 513 False 243.00 243 75.888000 1 523 1 chr6B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 1320 0.251916 TATTGGAACCCCTGACTGCG 59.748 55.0 0.0 0.0 0.0 5.18 F
1381 2415 0.463204 CATGCAGATCCCGAGTGACT 59.537 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 3564 2.203209 GCCATGTCGGGGGTCATC 60.203 66.667 0.00 0.00 34.06 2.92 R
2759 6202 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 77 3.775661 ACAATAAATTAGTGGCACCGC 57.224 42.857 15.27 0.00 0.00 5.68
88 94 4.637091 GCACCGCTATTACCCTTTAAGAAA 59.363 41.667 0.00 0.00 0.00 2.52
133 150 6.472808 GCAATGACAAAATTTGCACACATTTT 59.527 30.769 5.52 2.45 43.95 1.82
134 151 7.642978 GCAATGACAAAATTTGCACACATTTTA 59.357 29.630 5.52 0.00 43.95 1.52
135 152 8.945930 CAATGACAAAATTTGCACACATTTTAC 58.054 29.630 5.52 6.05 32.47 2.01
137 154 7.459486 TGACAAAATTTGCACACATTTTACAC 58.541 30.769 5.52 3.99 32.47 2.90
139 156 7.462731 ACAAAATTTGCACACATTTTACACAG 58.537 30.769 5.52 0.00 32.47 3.66
142 159 7.840342 AATTTGCACACATTTTACACAGAAA 57.160 28.000 0.00 0.00 0.00 2.52
144 161 7.462109 TTTGCACACATTTTACACAGAAATC 57.538 32.000 0.00 0.00 0.00 2.17
147 164 6.017852 TGCACACATTTTACACAGAAATCGTA 60.018 34.615 0.00 0.00 0.00 3.43
247 264 5.924475 AGTGGCATTGATATTACGCTTAC 57.076 39.130 0.00 0.00 0.00 2.34
249 266 5.820423 AGTGGCATTGATATTACGCTTACAA 59.180 36.000 0.00 0.00 0.00 2.41
250 267 6.017934 AGTGGCATTGATATTACGCTTACAAG 60.018 38.462 0.00 0.00 0.00 3.16
265 282 8.950403 ACGCTTACAAGAGAAATAAAATGAAC 57.050 30.769 0.00 0.00 0.00 3.18
266 283 8.564574 ACGCTTACAAGAGAAATAAAATGAACA 58.435 29.630 0.00 0.00 0.00 3.18
336 353 8.514330 AATAAATTAGTGGCTTCGGTATTTCA 57.486 30.769 0.00 0.00 0.00 2.69
346 363 5.064834 GGCTTCGGTATTTCACTTTAAGGAG 59.935 44.000 0.00 0.00 0.00 3.69
351 368 6.877322 TCGGTATTTCACTTTAAGGAGAAAGG 59.123 38.462 13.80 5.73 40.17 3.11
352 369 6.877322 CGGTATTTCACTTTAAGGAGAAAGGA 59.123 38.462 13.80 4.37 40.17 3.36
360 377 9.367160 TCACTTTAAGGAGAAAGGAAATGAAAT 57.633 29.630 0.00 0.00 40.17 2.17
458 480 6.590677 TGATGGTGCAATTTTCACACATATTG 59.409 34.615 9.14 0.00 36.00 1.90
462 484 8.093307 TGGTGCAATTTTCACACATATTGTATT 58.907 29.630 9.14 0.00 35.67 1.89
512 534 4.879295 TCAACATCCCAGAAATACCCAT 57.121 40.909 0.00 0.00 0.00 4.00
515 537 6.921412 TCAACATCCCAGAAATACCCATAAT 58.079 36.000 0.00 0.00 0.00 1.28
534 556 9.716507 CCCATAATAATAAAATAAAGATCGGCG 57.283 33.333 0.00 0.00 0.00 6.46
575 601 6.740453 ACAAAAGCAAAAACGCATAAAAACAG 59.260 30.769 0.00 0.00 0.00 3.16
576 602 4.451379 AGCAAAAACGCATAAAAACAGC 57.549 36.364 0.00 0.00 0.00 4.40
581 609 4.430407 AAACGCATAAAAACAGCAAACG 57.570 36.364 0.00 0.00 0.00 3.60
583 611 3.696898 ACGCATAAAAACAGCAAACGAA 58.303 36.364 0.00 0.00 0.00 3.85
626 1294 2.258591 CGACACCGCACTAGCACT 59.741 61.111 0.00 0.00 42.27 4.40
647 1315 6.364701 CACTTGATATTATTGGAACCCCTGA 58.635 40.000 0.00 0.00 0.00 3.86
652 1320 0.251916 TATTGGAACCCCTGACTGCG 59.748 55.000 0.00 0.00 0.00 5.18
668 1336 2.261671 CGTTCCTGGACCCACGAG 59.738 66.667 12.82 0.00 34.49 4.18
687 1355 3.609644 CGAGGTACTACCAATCGATGAGC 60.610 52.174 10.12 0.00 41.55 4.26
695 1363 1.475571 CCAATCGATGAGCCATGACCA 60.476 52.381 0.00 0.00 0.00 4.02
696 1364 2.501261 CAATCGATGAGCCATGACCAT 58.499 47.619 0.00 0.00 0.00 3.55
698 1366 4.259356 CAATCGATGAGCCATGACCATAT 58.741 43.478 0.00 0.00 0.00 1.78
703 1376 4.622220 CGATGAGCCATGACCATATCATCA 60.622 45.833 20.07 9.16 45.52 3.07
715 1388 4.828939 ACCATATCATCATGACCGCATTTT 59.171 37.500 0.00 0.00 30.68 1.82
724 1397 3.907894 TGACCGCATTTTAGACCAAAC 57.092 42.857 0.00 0.00 0.00 2.93
731 1404 4.447389 CGCATTTTAGACCAAACAAAAGGG 59.553 41.667 0.00 0.00 0.00 3.95
750 1427 9.161629 CAAAAGGGTAATTTGTGAAAAGAAACT 57.838 29.630 0.00 0.00 33.99 2.66
798 1475 2.591133 AGCAACACACAAAAACGACAC 58.409 42.857 0.00 0.00 0.00 3.67
800 1477 2.592459 GCAACACACAAAAACGACACTC 59.408 45.455 0.00 0.00 0.00 3.51
835 1512 9.774742 GTTCTCTTATTAAGCTATTTGTGTTGG 57.225 33.333 0.00 0.00 0.00 3.77
934 1929 6.019640 CAGTGTGCAGTTTAAACATTTTCAGG 60.020 38.462 20.06 1.07 0.00 3.86
983 1978 0.943359 GCAATCATCGCGAGCTAGCT 60.943 55.000 19.45 19.45 34.40 3.32
1066 2064 2.667199 TGGACGTCGACGCTGAGA 60.667 61.111 35.92 14.14 44.43 3.27
1381 2415 0.463204 CATGCAGATCCCGAGTGACT 59.537 55.000 0.00 0.00 0.00 3.41
1420 2454 2.844451 GCAGGTGTTCCGCTTTGCA 61.844 57.895 0.00 0.00 39.05 4.08
2371 3678 3.391382 GTGGCCTCCTACGTGGCT 61.391 66.667 13.66 0.00 46.05 4.75
2647 4119 4.937620 CGCCAATGATGTGTTATATAGCCT 59.062 41.667 0.00 0.00 0.00 4.58
2650 4122 6.128172 GCCAATGATGTGTTATATAGCCTGTC 60.128 42.308 0.00 0.00 0.00 3.51
2665 4137 1.825474 CCTGTCCAGACGTGACCTTAT 59.175 52.381 0.00 0.00 31.60 1.73
2762 6205 8.240267 ACAAGACTTCACTCTATATTACTCCC 57.760 38.462 0.00 0.00 0.00 4.30
2764 6207 8.573035 CAAGACTTCACTCTATATTACTCCCTC 58.427 40.741 0.00 0.00 0.00 4.30
2765 6208 7.235804 AGACTTCACTCTATATTACTCCCTCC 58.764 42.308 0.00 0.00 0.00 4.30
2766 6209 6.005198 ACTTCACTCTATATTACTCCCTCCG 58.995 44.000 0.00 0.00 0.00 4.63
2767 6210 5.579753 TCACTCTATATTACTCCCTCCGT 57.420 43.478 0.00 0.00 0.00 4.69
2770 6213 3.940221 CTCTATATTACTCCCTCCGTCCG 59.060 52.174 0.00 0.00 0.00 4.79
2771 6214 1.920610 ATATTACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
2772 6215 0.846015 TATTACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2773 6216 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2774 6217 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2775 6218 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2776 6219 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2777 6220 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2780 6223 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2782 6225 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2783 6226 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2784 6227 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
2786 6229 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
2787 6230 2.928116 GTCCGGAAATACTTGTCGAAGG 59.072 50.000 5.23 0.00 32.95 3.46
2788 6231 2.827322 TCCGGAAATACTTGTCGAAGGA 59.173 45.455 0.00 0.00 32.95 3.36
2789 6232 3.258872 TCCGGAAATACTTGTCGAAGGAA 59.741 43.478 0.00 0.00 32.95 3.36
2790 6233 4.081309 TCCGGAAATACTTGTCGAAGGAAT 60.081 41.667 0.00 0.00 32.95 3.01
2791 6234 4.034048 CCGGAAATACTTGTCGAAGGAATG 59.966 45.833 0.00 0.00 32.95 2.67
2792 6235 4.034048 CGGAAATACTTGTCGAAGGAATGG 59.966 45.833 0.00 0.00 32.95 3.16
2793 6236 5.183228 GGAAATACTTGTCGAAGGAATGGA 58.817 41.667 0.00 0.00 32.95 3.41
2794 6237 5.823045 GGAAATACTTGTCGAAGGAATGGAT 59.177 40.000 0.00 0.00 32.95 3.41
2795 6238 6.238484 GGAAATACTTGTCGAAGGAATGGATG 60.238 42.308 0.00 0.00 32.95 3.51
2796 6239 3.703001 ACTTGTCGAAGGAATGGATGT 57.297 42.857 0.00 0.00 32.95 3.06
2797 6240 4.819105 ACTTGTCGAAGGAATGGATGTA 57.181 40.909 0.00 0.00 32.95 2.29
2798 6241 5.359194 ACTTGTCGAAGGAATGGATGTAT 57.641 39.130 0.00 0.00 32.95 2.29
2799 6242 5.360591 ACTTGTCGAAGGAATGGATGTATC 58.639 41.667 0.00 0.00 32.95 2.24
2800 6243 5.129485 ACTTGTCGAAGGAATGGATGTATCT 59.871 40.000 0.00 0.00 32.95 1.98
2801 6244 6.323996 ACTTGTCGAAGGAATGGATGTATCTA 59.676 38.462 0.00 0.00 32.95 1.98
2802 6245 6.332735 TGTCGAAGGAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2803 6246 6.068670 TGTCGAAGGAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2804 6247 6.016192 TGTCGAAGGAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
2805 6248 5.181433 TCGAAGGAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
2806 6249 5.048643 CGAAGGAATGGATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
2807 6250 6.148976 CGAAGGAATGGATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
2808 6251 7.148222 CGAAGGAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
2809 6252 8.423906 AAGGAATGGATGTATCTAGACGTATT 57.576 34.615 0.00 0.00 0.00 1.89
2810 6253 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
2811 6254 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
2838 6281 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
2845 6288 9.415544 GATACATCCATTTTTATGCATTTCTCC 57.584 33.333 3.54 0.00 0.00 3.71
2846 6289 6.275335 ACATCCATTTTTATGCATTTCTCCG 58.725 36.000 3.54 0.00 0.00 4.63
2847 6290 6.096705 ACATCCATTTTTATGCATTTCTCCGA 59.903 34.615 3.54 0.00 0.00 4.55
2848 6291 5.890334 TCCATTTTTATGCATTTCTCCGAC 58.110 37.500 3.54 0.00 0.00 4.79
2849 6292 5.417266 TCCATTTTTATGCATTTCTCCGACA 59.583 36.000 3.54 0.00 0.00 4.35
2850 6293 6.071672 TCCATTTTTATGCATTTCTCCGACAA 60.072 34.615 3.54 0.00 0.00 3.18
2851 6294 6.254157 CCATTTTTATGCATTTCTCCGACAAG 59.746 38.462 3.54 0.00 0.00 3.16
2852 6295 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
2853 6296 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
2854 6297 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
2855 6298 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
2856 6299 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
2857 6300 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
2858 6301 4.394920 TGCATTTCTCCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
2859 6302 4.494199 GCATTTCTCCGACAAGTATTTCCG 60.494 45.833 0.00 0.00 0.00 4.30
2860 6303 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2861 6304 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2862 6305 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2863 6306 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2864 6307 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2865 6308 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2866 6309 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2867 6310 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2868 6311 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2869 6312 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2870 6313 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2871 6314 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2872 6315 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2873 6316 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2874 6317 3.207669 CCGGACGGAGGGAGTACG 61.208 72.222 4.40 0.00 44.88 3.67
2875 6318 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
2876 6319 1.153369 CGGACGGAGGGAGTACGTA 60.153 63.158 0.00 0.00 40.75 3.57
2877 6320 0.744414 CGGACGGAGGGAGTACGTAA 60.744 60.000 0.00 0.00 40.75 3.18
2878 6321 1.685148 GGACGGAGGGAGTACGTAAT 58.315 55.000 0.00 0.00 41.40 1.89
2879 6322 2.806745 CGGACGGAGGGAGTACGTAATA 60.807 54.545 0.00 0.00 40.75 0.98
2880 6323 3.214328 GGACGGAGGGAGTACGTAATAA 58.786 50.000 0.00 0.00 41.40 1.40
2881 6324 3.823304 GGACGGAGGGAGTACGTAATAAT 59.177 47.826 0.00 0.00 41.40 1.28
2882 6325 4.320788 GGACGGAGGGAGTACGTAATAATG 60.321 50.000 0.00 0.00 41.40 1.90
2984 6427 3.497332 TGTGTGAGTTCTAGTACTGCCT 58.503 45.455 6.76 0.00 0.00 4.75
2990 6433 4.344102 TGAGTTCTAGTACTGCCTGTGTTT 59.656 41.667 6.76 0.00 0.00 2.83
3005 6448 5.456186 GCCTGTGTTTATGTATAGGGATGGT 60.456 44.000 0.00 0.00 0.00 3.55
3109 6552 7.548780 CGTTTACATGATTGGGGATGAAATTTT 59.451 33.333 0.00 0.00 0.00 1.82
3149 6592 2.686572 GGAACGGGGCCCCATTAGT 61.687 63.158 40.06 26.61 35.37 2.24
3246 6691 5.046014 CCTTGTCCTGCTAATGCCTATCTAT 60.046 44.000 0.00 0.00 38.71 1.98
3247 6692 6.155221 CCTTGTCCTGCTAATGCCTATCTATA 59.845 42.308 0.00 0.00 38.71 1.31
3444 6894 0.771127 CGTCCCCATCCCCATTGTAT 59.229 55.000 0.00 0.00 0.00 2.29
3504 6956 1.474330 GATGTTTTTCGCCCATCCCT 58.526 50.000 0.00 0.00 30.98 4.20
3505 6957 1.134946 GATGTTTTTCGCCCATCCCTG 59.865 52.381 0.00 0.00 30.98 4.45
3507 6959 1.076549 TTTTTCGCCCATCCCTGCT 59.923 52.632 0.00 0.00 0.00 4.24
3548 7002 2.441348 GTTTGGCGGGTATGGGGG 60.441 66.667 0.00 0.00 0.00 5.40
3570 7024 3.192844 GCCCATTGCCATCTCTATTCATG 59.807 47.826 0.00 0.00 0.00 3.07
3572 7026 5.563592 CCCATTGCCATCTCTATTCATGTA 58.436 41.667 0.00 0.00 0.00 2.29
3574 7028 6.095021 CCCATTGCCATCTCTATTCATGTATG 59.905 42.308 0.00 0.00 0.00 2.39
3575 7029 6.404403 CCATTGCCATCTCTATTCATGTATGC 60.404 42.308 0.00 0.00 0.00 3.14
3576 7030 5.494390 TGCCATCTCTATTCATGTATGCT 57.506 39.130 0.00 0.00 0.00 3.79
3578 7032 5.704053 TGCCATCTCTATTCATGTATGCTTG 59.296 40.000 0.00 0.00 0.00 4.01
3579 7033 5.704515 GCCATCTCTATTCATGTATGCTTGT 59.295 40.000 0.00 0.00 0.00 3.16
3580 7034 6.348295 GCCATCTCTATTCATGTATGCTTGTG 60.348 42.308 0.00 0.00 0.00 3.33
3581 7035 6.148976 CCATCTCTATTCATGTATGCTTGTGG 59.851 42.308 0.00 0.00 0.00 4.17
3582 7036 6.239217 TCTCTATTCATGTATGCTTGTGGT 57.761 37.500 0.00 0.00 0.00 4.16
3583 7037 7.360113 TCTCTATTCATGTATGCTTGTGGTA 57.640 36.000 0.00 0.00 0.00 3.25
3584 7038 7.966812 TCTCTATTCATGTATGCTTGTGGTAT 58.033 34.615 0.00 0.00 0.00 2.73
3585 7039 7.874528 TCTCTATTCATGTATGCTTGTGGTATG 59.125 37.037 0.00 0.00 0.00 2.39
3586 7040 4.898829 TTCATGTATGCTTGTGGTATGC 57.101 40.909 0.00 0.00 0.00 3.14
3587 7041 3.883669 TCATGTATGCTTGTGGTATGCA 58.116 40.909 0.00 0.00 42.73 3.96
3589 7043 4.542735 CATGTATGCTTGTGGTATGCATG 58.457 43.478 10.16 9.29 46.86 4.06
3590 7044 3.619419 TGTATGCTTGTGGTATGCATGT 58.381 40.909 10.16 0.00 46.18 3.21
3591 7045 4.775236 TGTATGCTTGTGGTATGCATGTA 58.225 39.130 10.16 0.00 46.18 2.29
3592 7046 5.375773 TGTATGCTTGTGGTATGCATGTAT 58.624 37.500 10.16 0.82 46.18 2.29
3593 7047 6.529220 TGTATGCTTGTGGTATGCATGTATA 58.471 36.000 10.16 0.00 46.18 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 58 5.689383 ATAGCGGTGCCACTAATTTATTG 57.311 39.130 0.00 0.00 0.00 1.90
97 103 9.291664 CAAATTTTGTCATTGCTTTGTTTCATT 57.708 25.926 0.78 0.00 0.00 2.57
99 105 6.746364 GCAAATTTTGTCATTGCTTTGTTTCA 59.254 30.769 10.65 0.00 44.54 2.69
100 106 7.140475 GCAAATTTTGTCATTGCTTTGTTTC 57.860 32.000 10.65 0.00 44.54 2.78
109 115 7.972623 AAAATGTGTGCAAATTTTGTCATTG 57.027 28.000 11.11 0.00 35.27 2.82
220 237 7.510549 AGCGTAATATCAATGCCACTAATTT 57.489 32.000 0.00 0.00 0.00 1.82
314 331 5.944007 AGTGAAATACCGAAGCCACTAATTT 59.056 36.000 0.00 0.00 33.65 1.82
325 342 7.389607 CCTTTCTCCTTAAAGTGAAATACCGAA 59.610 37.037 2.65 0.00 35.16 4.30
327 344 6.877322 TCCTTTCTCCTTAAAGTGAAATACCG 59.123 38.462 2.65 0.00 35.16 4.02
434 456 6.591062 ACAATATGTGTGAAAATTGCACCATC 59.409 34.615 10.12 0.00 39.72 3.51
437 459 8.382130 CAATACAATATGTGTGAAAATTGCACC 58.618 33.333 0.99 0.00 41.89 5.01
490 512 4.666412 TGGGTATTTCTGGGATGTTGAA 57.334 40.909 0.00 0.00 0.00 2.69
548 574 7.591426 TGTTTTTATGCGTTTTTGCTTTTGTTT 59.409 25.926 0.00 0.00 35.36 2.83
626 1294 6.364701 CAGTCAGGGGTTCCAATAATATCAA 58.635 40.000 0.00 0.00 34.83 2.57
652 1320 2.663196 CCTCGTGGGTCCAGGAAC 59.337 66.667 12.61 0.00 39.80 3.62
668 1336 2.364324 TGGCTCATCGATTGGTAGTACC 59.636 50.000 12.80 12.80 39.22 3.34
670 1338 3.895041 TCATGGCTCATCGATTGGTAGTA 59.105 43.478 0.00 0.00 0.00 1.82
695 1363 6.372659 GGTCTAAAATGCGGTCATGATGATAT 59.627 38.462 0.00 0.00 32.23 1.63
696 1364 5.700832 GGTCTAAAATGCGGTCATGATGATA 59.299 40.000 0.00 0.00 32.23 2.15
698 1366 3.876914 GGTCTAAAATGCGGTCATGATGA 59.123 43.478 0.00 0.00 32.23 2.92
701 1374 3.342377 TGGTCTAAAATGCGGTCATGA 57.658 42.857 0.00 0.00 32.23 3.07
703 1376 3.823873 TGTTTGGTCTAAAATGCGGTCAT 59.176 39.130 0.00 0.00 33.53 3.06
715 1388 7.342284 TCACAAATTACCCTTTTGTTTGGTCTA 59.658 33.333 0.00 0.00 42.96 2.59
724 1397 9.161629 AGTTTCTTTTCACAAATTACCCTTTTG 57.838 29.630 0.00 0.00 39.43 2.44
731 1404 9.170584 GCTCTGTAGTTTCTTTTCACAAATTAC 57.829 33.333 0.00 0.00 0.00 1.89
819 1496 6.266558 ACAAATGTCCCAACACAAATAGCTTA 59.733 34.615 0.00 0.00 38.48 3.09
824 1501 5.860941 ACACAAATGTCCCAACACAAATA 57.139 34.783 0.00 0.00 38.48 1.40
825 1502 4.751767 ACACAAATGTCCCAACACAAAT 57.248 36.364 0.00 0.00 38.48 2.32
826 1503 4.543590 AACACAAATGTCCCAACACAAA 57.456 36.364 0.00 0.00 38.45 2.83
828 1505 4.646945 ACATAACACAAATGTCCCAACACA 59.353 37.500 0.00 0.00 38.45 3.72
829 1506 5.195001 ACATAACACAAATGTCCCAACAC 57.805 39.130 0.00 0.00 38.45 3.32
830 1507 5.446143 GACATAACACAAATGTCCCAACA 57.554 39.130 5.14 0.00 44.87 3.33
912 1905 6.039616 GTCCTGAAAATGTTTAAACTGCACA 58.960 36.000 18.72 11.20 0.00 4.57
934 1929 1.063174 CTTGCTCGGCTATGCTTTGTC 59.937 52.381 0.00 0.00 0.00 3.18
983 1978 2.418197 GCCATCGTCACCTAACTTGCTA 60.418 50.000 0.00 0.00 0.00 3.49
1050 2048 1.583967 CATCTCAGCGTCGACGTCC 60.584 63.158 35.48 21.82 42.22 4.79
1062 2060 1.437573 GCCGACGATGACCATCTCA 59.562 57.895 8.20 0.00 35.72 3.27
1066 2064 4.891727 GGCGCCGACGATGACCAT 62.892 66.667 12.58 0.00 43.93 3.55
1381 2415 2.288825 CGTTGCTCCAGTTTCCAGAGTA 60.289 50.000 0.00 0.00 0.00 2.59
1420 2454 1.626825 TCTAACCTGCTTTTACGCCCT 59.373 47.619 0.00 0.00 0.00 5.19
1770 2860 3.815401 ACCCACTTGTCATTCTTCGAAAG 59.185 43.478 0.00 0.00 0.00 2.62
2257 3564 2.203209 GCCATGTCGGGGGTCATC 60.203 66.667 0.00 0.00 34.06 2.92
2647 4119 2.521126 TGATAAGGTCACGTCTGGACA 58.479 47.619 6.82 0.00 37.00 4.02
2650 4122 4.330074 GTGAATTGATAAGGTCACGTCTGG 59.670 45.833 0.00 0.00 36.32 3.86
2759 6202 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2760 6203 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2761 6204 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2762 6205 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2764 6207 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
2765 6208 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
2766 6209 2.928116 CCTTCGACAAGTATTTCCGGAC 59.072 50.000 1.83 0.00 0.00 4.79
2767 6210 2.827322 TCCTTCGACAAGTATTTCCGGA 59.173 45.455 0.00 0.00 0.00 5.14
2770 6213 5.183228 TCCATTCCTTCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2771 6214 6.316390 ACATCCATTCCTTCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
2772 6215 6.180472 ACATCCATTCCTTCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
2773 6216 5.745227 ACATCCATTCCTTCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
2774 6217 5.359194 ACATCCATTCCTTCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
2775 6218 4.819105 ACATCCATTCCTTCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2776 6219 3.703001 ACATCCATTCCTTCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2777 6220 5.605534 AGATACATCCATTCCTTCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2780 6223 6.383415 GTCTAGATACATCCATTCCTTCGAC 58.617 44.000 0.00 0.00 0.00 4.20
2782 6225 5.048643 ACGTCTAGATACATCCATTCCTTCG 60.049 44.000 0.00 0.00 0.00 3.79
2783 6226 6.334102 ACGTCTAGATACATCCATTCCTTC 57.666 41.667 0.00 0.00 0.00 3.46
2784 6227 8.423906 AATACGTCTAGATACATCCATTCCTT 57.576 34.615 0.00 0.00 0.00 3.36
2812 6255 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
2819 6262 9.415544 GGAGAAATGCATAAAAATGGATGTATC 57.584 33.333 0.00 0.00 32.82 2.24
2820 6263 8.084073 CGGAGAAATGCATAAAAATGGATGTAT 58.916 33.333 0.00 0.00 32.82 2.29
2821 6264 7.284261 TCGGAGAAATGCATAAAAATGGATGTA 59.716 33.333 0.00 0.00 32.82 2.29
2822 6265 6.096705 TCGGAGAAATGCATAAAAATGGATGT 59.903 34.615 0.00 0.00 32.82 3.06
2823 6266 6.418819 GTCGGAGAAATGCATAAAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
2824 6267 6.096705 TGTCGGAGAAATGCATAAAAATGGAT 59.903 34.615 0.00 0.00 39.69 3.41
2825 6268 5.417266 TGTCGGAGAAATGCATAAAAATGGA 59.583 36.000 0.00 0.00 39.69 3.41
2826 6269 5.649557 TGTCGGAGAAATGCATAAAAATGG 58.350 37.500 0.00 0.00 39.69 3.16
2827 6270 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
2828 6271 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
2829 6272 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
2830 6273 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
2831 6274 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
2832 6275 7.201696 GGAAATACTTGTCGGAGAAATGCATAA 60.202 37.037 0.00 0.00 39.69 1.90
2833 6276 6.260050 GGAAATACTTGTCGGAGAAATGCATA 59.740 38.462 0.00 0.00 39.69 3.14
2834 6277 5.066505 GGAAATACTTGTCGGAGAAATGCAT 59.933 40.000 0.00 0.00 39.69 3.96
2835 6278 4.394920 GGAAATACTTGTCGGAGAAATGCA 59.605 41.667 0.00 0.00 39.69 3.96
2836 6279 4.494199 CGGAAATACTTGTCGGAGAAATGC 60.494 45.833 0.00 0.00 39.69 3.56
2837 6280 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2838 6281 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2839 6282 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2840 6283 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2841 6284 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2842 6285 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2843 6286 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2844 6287 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2845 6288 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2846 6289 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2847 6290 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2848 6291 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2849 6292 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2850 6293 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2851 6294 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2852 6295 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2853 6296 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2854 6297 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2855 6298 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2856 6299 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
2857 6300 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
2858 6301 0.744414 TTACGTACTCCCTCCGTCCG 60.744 60.000 0.00 0.00 36.12 4.79
2859 6302 1.685148 ATTACGTACTCCCTCCGTCC 58.315 55.000 0.00 0.00 36.12 4.79
2860 6303 4.276926 ACATTATTACGTACTCCCTCCGTC 59.723 45.833 0.00 0.00 36.12 4.79
2861 6304 4.210331 ACATTATTACGTACTCCCTCCGT 58.790 43.478 0.00 0.00 38.53 4.69
2862 6305 4.518211 AGACATTATTACGTACTCCCTCCG 59.482 45.833 0.00 0.00 0.00 4.63
2863 6306 6.402456 AAGACATTATTACGTACTCCCTCC 57.598 41.667 0.00 0.00 0.00 4.30
2864 6307 8.628280 ACTTAAGACATTATTACGTACTCCCTC 58.372 37.037 10.09 0.00 0.00 4.30
2865 6308 8.530804 ACTTAAGACATTATTACGTACTCCCT 57.469 34.615 10.09 0.00 0.00 4.20
2866 6309 9.028185 CAACTTAAGACATTATTACGTACTCCC 57.972 37.037 10.09 0.00 0.00 4.30
2867 6310 9.028185 CCAACTTAAGACATTATTACGTACTCC 57.972 37.037 10.09 0.00 0.00 3.85
2868 6311 9.793252 TCCAACTTAAGACATTATTACGTACTC 57.207 33.333 10.09 0.00 0.00 2.59
2869 6312 9.798994 CTCCAACTTAAGACATTATTACGTACT 57.201 33.333 10.09 0.00 0.00 2.73
2870 6313 9.793252 TCTCCAACTTAAGACATTATTACGTAC 57.207 33.333 10.09 0.00 0.00 3.67
2872 6315 9.886132 AATCTCCAACTTAAGACATTATTACGT 57.114 29.630 10.09 0.00 0.00 3.57
2879 6322 9.136323 ACAGAAAAATCTCCAACTTAAGACATT 57.864 29.630 10.09 0.00 0.00 2.71
2880 6323 8.697507 ACAGAAAAATCTCCAACTTAAGACAT 57.302 30.769 10.09 0.00 0.00 3.06
2881 6324 7.773224 TGACAGAAAAATCTCCAACTTAAGACA 59.227 33.333 10.09 0.00 0.00 3.41
2882 6325 8.154649 TGACAGAAAAATCTCCAACTTAAGAC 57.845 34.615 10.09 0.00 0.00 3.01
2947 6390 1.542030 ACACAAAAACACGCTGAACCA 59.458 42.857 0.00 0.00 0.00 3.67
2949 6392 2.845967 CTCACACAAAAACACGCTGAAC 59.154 45.455 0.00 0.00 0.00 3.18
2984 6427 8.160765 CCATTACCATCCCTATACATAAACACA 58.839 37.037 0.00 0.00 0.00 3.72
2990 6433 5.968167 GTCCCCATTACCATCCCTATACATA 59.032 44.000 0.00 0.00 0.00 2.29
3045 6488 5.304210 TGATAGGGAATAGATGGGGATGA 57.696 43.478 0.00 0.00 0.00 2.92
3109 6552 2.045303 TGGGGCATGGGTATGGGA 59.955 61.111 0.00 0.00 34.79 4.37
3246 6691 5.316167 TGACCAAGAAGTAAGTACGACCTA 58.684 41.667 0.00 0.00 0.00 3.08
3247 6692 4.147321 TGACCAAGAAGTAAGTACGACCT 58.853 43.478 0.00 0.00 0.00 3.85
3444 6894 6.962902 ACAAAACCAATTTATTCCCCATAGGA 59.037 34.615 0.00 0.00 45.68 2.94
3504 6956 3.181429 GGGGATTTCATCTATTGGGAGCA 60.181 47.826 0.00 0.00 0.00 4.26
3505 6957 3.181429 TGGGGATTTCATCTATTGGGAGC 60.181 47.826 0.00 0.00 0.00 4.70
3507 6959 4.202706 CCATGGGGATTTCATCTATTGGGA 60.203 45.833 2.85 0.00 35.59 4.37
3548 7002 2.867624 TGAATAGAGATGGCAATGGGC 58.132 47.619 0.00 0.00 43.74 5.36
3570 7024 5.947228 ATACATGCATACCACAAGCATAC 57.053 39.130 0.00 0.00 46.39 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.