Multiple sequence alignment - TraesCS2D01G298900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G298900 chr2D 100.000 5729 0 0 1 5729 380933963 380939691 0.000000e+00 10580.0
1 TraesCS2D01G298900 chr2D 96.946 3045 63 10 1258 4288 381092626 381089598 0.000000e+00 5081.0
2 TraesCS2D01G298900 chr2D 95.802 1048 18 4 4698 5729 380775046 380776083 0.000000e+00 1668.0
3 TraesCS2D01G298900 chr2D 97.181 745 15 2 3958 4696 380773920 380774664 0.000000e+00 1254.0
4 TraesCS2D01G298900 chr2D 97.881 708 6 2 708 1412 380923689 380924390 0.000000e+00 1216.0
5 TraesCS2D01G298900 chr2D 85.466 1094 98 37 2399 3466 381567489 381566431 0.000000e+00 1083.0
6 TraesCS2D01G298900 chr2D 95.913 416 17 0 4281 4696 381089349 381088934 0.000000e+00 675.0
7 TraesCS2D01G298900 chr2D 89.080 522 53 4 2126 2644 381295821 381295301 0.000000e+00 645.0
8 TraesCS2D01G298900 chr2D 96.528 288 10 0 4805 5092 381088476 381088189 1.440000e-130 477.0
9 TraesCS2D01G298900 chr2D 81.834 589 77 16 1392 1974 381568242 381567678 8.690000e-128 468.0
10 TraesCS2D01G298900 chr2D 97.992 249 5 0 949 1197 381092880 381092632 3.170000e-117 433.0
11 TraesCS2D01G298900 chr2D 98.429 191 2 1 708 897 381093066 381092876 9.200000e-88 335.0
12 TraesCS2D01G298900 chr2D 83.562 365 43 12 1776 2132 637579624 637579979 5.540000e-85 326.0
13 TraesCS2D01G298900 chr2D 87.108 287 35 2 4411 4696 381244959 381244674 1.990000e-84 324.0
14 TraesCS2D01G298900 chr2D 90.991 222 14 5 3733 3951 381566080 381565862 1.560000e-75 294.0
15 TraesCS2D01G298900 chr2D 74.868 756 133 33 1392 2132 381297027 381296314 2.020000e-74 291.0
16 TraesCS2D01G298900 chr2D 97.006 167 5 0 1246 1412 381088191 381088025 1.220000e-71 281.0
17 TraesCS2D01G298900 chr2D 76.794 418 77 15 4693 5102 381294347 381293942 3.480000e-52 217.0
18 TraesCS2D01G298900 chr2D 90.000 90 9 0 2165 2254 381295694 381295605 3.630000e-22 117.0
19 TraesCS2D01G298900 chr2D 93.243 74 5 0 4698 4771 381088552 381088479 6.070000e-20 110.0
20 TraesCS2D01G298900 chr2D 100.000 33 0 0 1313 1345 516358739 516358771 1.720000e-05 62.1
21 TraesCS2D01G298900 chr2D 100.000 29 0 0 5175 5203 27265111 27265083 3.000000e-03 54.7
22 TraesCS2D01G298900 chr2A 95.124 1087 26 9 1284 2364 762141371 762142436 0.000000e+00 1688.0
23 TraesCS2D01G298900 chr2A 93.718 987 30 8 3048 4026 762143168 762144130 0.000000e+00 1450.0
24 TraesCS2D01G298900 chr2A 97.128 592 16 1 2363 2954 762142560 762143150 0.000000e+00 998.0
25 TraesCS2D01G298900 chr2A 88.762 525 52 4 2126 2644 762232829 762233352 2.250000e-178 636.0
26 TraesCS2D01G298900 chr2A 81.491 751 98 23 1396 2132 762469823 762469100 3.850000e-161 579.0
27 TraesCS2D01G298900 chr2A 95.278 360 8 4 4718 5077 762144776 762145126 3.880000e-156 562.0
28 TraesCS2D01G298900 chr2A 81.497 708 105 16 1392 2092 762017660 762018348 5.010000e-155 558.0
29 TraesCS2D01G298900 chr2A 96.463 311 11 0 4386 4696 762144125 762144435 1.100000e-141 514.0
30 TraesCS2D01G298900 chr2A 84.233 463 49 16 260 719 409165011 409165452 4.100000e-116 429.0
31 TraesCS2D01G298900 chr2A 87.931 290 35 0 4405 4694 762233632 762233921 5.500000e-90 342.0
32 TraesCS2D01G298900 chr2A 84.123 359 49 5 4339 4696 762018492 762018843 1.980000e-89 340.0
33 TraesCS2D01G298900 chr2A 84.507 142 15 4 966 1106 762141170 762141305 3.600000e-27 134.0
34 TraesCS2D01G298900 chr2A 92.500 80 4 2 2175 2254 762232968 762233045 4.690000e-21 113.0
35 TraesCS2D01G298900 chr2A 93.443 61 4 0 1196 1256 762141310 762141370 2.200000e-14 91.6
36 TraesCS2D01G298900 chr2A 91.379 58 1 3 5202 5255 735403217 735403160 6.160000e-10 76.8
37 TraesCS2D01G298900 chr2A 100.000 33 0 0 1313 1345 659905895 659905927 1.720000e-05 62.1
38 TraesCS2D01G298900 chr2B 94.268 977 25 5 1196 2172 795283401 795282456 0.000000e+00 1465.0
39 TraesCS2D01G298900 chr2B 94.142 478 16 6 239 716 783419758 783419293 0.000000e+00 717.0
40 TraesCS2D01G298900 chr2B 94.474 380 12 4 4698 5077 795281419 795281049 1.380000e-160 577.0
41 TraesCS2D01G298900 chr2B 87.866 478 45 10 239 707 686090561 686090088 3.020000e-152 549.0
42 TraesCS2D01G298900 chr2B 81.241 693 103 16 1392 2072 795426495 795425818 8.450000e-148 534.0
43 TraesCS2D01G298900 chr2B 97.581 248 5 1 4450 4696 795282036 795281789 1.910000e-114 424.0
44 TraesCS2D01G298900 chr2B 84.680 359 47 5 4339 4696 795425654 795425303 9.130000e-93 351.0
45 TraesCS2D01G298900 chr2B 88.889 207 15 6 3601 3801 795282457 795282253 1.230000e-61 248.0
46 TraesCS2D01G298900 chr2B 92.529 174 6 3 3859 4026 795282236 795282064 5.740000e-60 243.0
47 TraesCS2D01G298900 chr2B 77.749 382 74 8 4719 5099 794898765 794898394 2.080000e-54 224.0
48 TraesCS2D01G298900 chr2B 84.153 183 22 4 925 1106 795283582 795283406 2.740000e-38 171.0
49 TraesCS2D01G298900 chr2B 92.593 54 2 2 5205 5257 543430223 543430171 6.160000e-10 76.8
50 TraesCS2D01G298900 chr2B 100.000 29 0 0 5175 5203 649474684 649474712 3.000000e-03 54.7
51 TraesCS2D01G298900 chrUn 85.023 1095 103 35 2399 3466 22746937 22747997 0.000000e+00 1057.0
52 TraesCS2D01G298900 chrUn 81.343 670 95 17 1392 2055 22746037 22746682 8.510000e-143 518.0
53 TraesCS2D01G298900 chrUn 86.760 287 36 2 4411 4696 22749082 22749367 9.260000e-83 318.0
54 TraesCS2D01G298900 chrUn 90.991 222 14 5 3733 3951 22748348 22748566 1.560000e-75 294.0
55 TraesCS2D01G298900 chr3B 94.154 479 20 8 239 716 809080667 809080196 0.000000e+00 723.0
56 TraesCS2D01G298900 chr3B 91.071 56 4 1 5202 5256 62309955 62309900 2.210000e-09 75.0
57 TraesCS2D01G298900 chr1B 93.895 475 17 6 239 713 627878409 627877947 0.000000e+00 706.0
58 TraesCS2D01G298900 chr1B 94.043 470 17 6 239 708 559580216 559579758 0.000000e+00 702.0
59 TraesCS2D01G298900 chr1B 86.667 75 6 3 5177 5249 46135649 46135721 4.760000e-11 80.5
60 TraesCS2D01G298900 chr1A 93.515 478 20 5 239 716 111975362 111974896 0.000000e+00 701.0
61 TraesCS2D01G298900 chr1A 93.206 471 20 6 239 709 107522902 107522444 0.000000e+00 682.0
62 TraesCS2D01G298900 chr5B 92.576 458 20 8 275 728 215895494 215895941 0.000000e+00 645.0
63 TraesCS2D01G298900 chr5B 81.356 177 26 6 5409 5580 406571675 406571501 2.780000e-28 137.0
64 TraesCS2D01G298900 chr5B 89.831 59 4 2 5202 5259 165087709 165087652 2.210000e-09 75.0
65 TraesCS2D01G298900 chr5B 85.135 74 7 3 5173 5245 427243149 427243219 7.960000e-09 73.1
66 TraesCS2D01G298900 chr1D 87.500 488 46 11 241 719 480637261 480637742 3.020000e-152 549.0
67 TraesCS2D01G298900 chr6B 86.465 495 48 11 239 721 560787454 560787941 5.090000e-145 525.0
68 TraesCS2D01G298900 chr6B 85.915 497 49 13 239 721 560690221 560690710 1.420000e-140 510.0
69 TraesCS2D01G298900 chr6B 92.453 53 2 2 5202 5253 224208404 224208455 2.210000e-09 75.0
70 TraesCS2D01G298900 chr5D 94.979 239 10 2 1 238 82196513 82196276 1.950000e-99 374.0
71 TraesCS2D01G298900 chr5D 87.500 96 11 1 5486 5580 361651893 361651798 6.070000e-20 110.0
72 TraesCS2D01G298900 chr7B 79.924 264 25 9 1 237 697283263 697283525 9.870000e-38 169.0
73 TraesCS2D01G298900 chr4A 84.783 138 17 4 5419 5552 252675330 252675193 1.000000e-27 135.0
74 TraesCS2D01G298900 chr7A 85.185 108 13 3 136 241 555477401 555477507 2.180000e-19 108.0
75 TraesCS2D01G298900 chr4D 93.151 73 4 1 5177 5248 439780389 439780317 7.850000e-19 106.0
76 TraesCS2D01G298900 chr4D 85.075 67 6 3 5402 5465 127164024 127164089 1.330000e-06 65.8
77 TraesCS2D01G298900 chr3D 80.180 111 16 6 5402 5508 48052769 48052877 1.710000e-10 78.7
78 TraesCS2D01G298900 chr4B 85.075 67 6 3 5402 5465 191229906 191229971 1.330000e-06 65.8
79 TraesCS2D01G298900 chr4B 97.059 34 1 0 1313 1346 362713304 362713337 2.230000e-04 58.4
80 TraesCS2D01G298900 chr6D 94.595 37 2 0 1313 1349 17047536 17047500 2.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G298900 chr2D 380933963 380939691 5728 False 10580.000000 10580 100.000000 1 5729 1 chr2D.!!$F2 5728
1 TraesCS2D01G298900 chr2D 380773920 380776083 2163 False 1461.000000 1668 96.491500 3958 5729 2 chr2D.!!$F5 1771
2 TraesCS2D01G298900 chr2D 380923689 380924390 701 False 1216.000000 1216 97.881000 708 1412 1 chr2D.!!$F1 704
3 TraesCS2D01G298900 chr2D 381088025 381093066 5041 True 1056.000000 5081 96.579571 708 5092 7 chr2D.!!$R3 4384
4 TraesCS2D01G298900 chr2D 381565862 381568242 2380 True 615.000000 1083 86.097000 1392 3951 3 chr2D.!!$R5 2559
5 TraesCS2D01G298900 chr2D 381293942 381297027 3085 True 317.500000 645 82.685500 1392 5102 4 chr2D.!!$R4 3710
6 TraesCS2D01G298900 chr2A 762141170 762145126 3956 False 776.800000 1688 93.665857 966 5077 7 chr2A.!!$F4 4111
7 TraesCS2D01G298900 chr2A 762469100 762469823 723 True 579.000000 579 81.491000 1396 2132 1 chr2A.!!$R2 736
8 TraesCS2D01G298900 chr2A 762017660 762018843 1183 False 449.000000 558 82.810000 1392 4696 2 chr2A.!!$F3 3304
9 TraesCS2D01G298900 chr2A 762232829 762233921 1092 False 363.666667 636 89.731000 2126 4694 3 chr2A.!!$F5 2568
10 TraesCS2D01G298900 chr2B 795281049 795283582 2533 True 521.333333 1465 91.982333 925 5077 6 chr2B.!!$R5 4152
11 TraesCS2D01G298900 chr2B 795425303 795426495 1192 True 442.500000 534 82.960500 1392 4696 2 chr2B.!!$R6 3304
12 TraesCS2D01G298900 chrUn 22746037 22749367 3330 False 546.750000 1057 86.029250 1392 4696 4 chrUn.!!$F1 3304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.040870 CGCACCGCACACAAACATTA 60.041 50.000 0.00 0.00 0.00 1.90 F
657 658 0.179121 ATGCACAATGGCGCATGAAG 60.179 50.000 10.83 5.00 46.78 3.02 F
701 702 0.250209 TGCAACGCATGGGCAATTTT 60.250 45.000 10.10 0.00 41.24 1.82 F
803 807 0.251341 AAAAAGCGATCCAGTGGGCT 60.251 50.000 9.92 7.51 37.33 5.19 F
2306 2934 2.037251 TCTTTAGGCTCGCTGTCTTGTT 59.963 45.455 0.00 0.00 0.00 2.83 F
3300 4075 0.107993 GCATAGTGGTCTGCTCAGCA 60.108 55.000 0.00 0.00 35.49 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2934 7.013274 GGCAGGTACAGAATATCTTTAAATGCA 59.987 37.037 0.00 0.0 30.34 3.96 R
2415 3168 3.181426 TGTCCTGTTACTAGACCAGTCCA 60.181 47.826 0.00 0.0 38.80 4.02 R
2773 3540 4.155449 GCTTGCATTTAAATCGTCGTCAA 58.845 39.130 0.00 0.0 0.00 3.18 R
3218 3992 5.880054 TTCTAACCTGTGCTTGCTATTTC 57.120 39.130 0.00 0.0 0.00 2.17 R
4516 6229 0.899717 GTGATGGCAGCAGGGGAAAA 60.900 55.000 5.29 0.0 0.00 2.29 R
4752 6846 1.001641 GCCACAGCAGGAGACCAAT 60.002 57.895 0.00 0.0 39.53 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.661648 GGGCTTGCAGGAGGGGAA 61.662 66.667 0.00 0.00 0.00 3.97
25 26 2.044551 GGCTTGCAGGAGGGGAAG 60.045 66.667 0.00 0.00 39.01 3.46
26 27 2.044551 GCTTGCAGGAGGGGAAGG 60.045 66.667 0.00 0.00 36.80 3.46
27 28 2.606587 GCTTGCAGGAGGGGAAGGA 61.607 63.158 0.00 0.00 36.80 3.36
28 29 1.606531 CTTGCAGGAGGGGAAGGAG 59.393 63.158 0.00 0.00 33.15 3.69
29 30 0.911525 CTTGCAGGAGGGGAAGGAGA 60.912 60.000 0.00 0.00 33.15 3.71
30 31 0.911525 TTGCAGGAGGGGAAGGAGAG 60.912 60.000 0.00 0.00 0.00 3.20
31 32 2.069430 GCAGGAGGGGAAGGAGAGG 61.069 68.421 0.00 0.00 0.00 3.69
32 33 1.394151 CAGGAGGGGAAGGAGAGGT 59.606 63.158 0.00 0.00 0.00 3.85
33 34 0.689412 CAGGAGGGGAAGGAGAGGTC 60.689 65.000 0.00 0.00 0.00 3.85
34 35 1.758906 GGAGGGGAAGGAGAGGTCG 60.759 68.421 0.00 0.00 0.00 4.79
35 36 1.758906 GAGGGGAAGGAGAGGTCGG 60.759 68.421 0.00 0.00 0.00 4.79
36 37 2.764547 GGGGAAGGAGAGGTCGGG 60.765 72.222 0.00 0.00 0.00 5.14
37 38 2.764547 GGGAAGGAGAGGTCGGGG 60.765 72.222 0.00 0.00 0.00 5.73
38 39 2.363361 GGAAGGAGAGGTCGGGGA 59.637 66.667 0.00 0.00 0.00 4.81
39 40 1.758906 GGAAGGAGAGGTCGGGGAG 60.759 68.421 0.00 0.00 0.00 4.30
40 41 1.306970 GAAGGAGAGGTCGGGGAGA 59.693 63.158 0.00 0.00 0.00 3.71
41 42 0.753848 GAAGGAGAGGTCGGGGAGAG 60.754 65.000 0.00 0.00 0.00 3.20
42 43 2.123640 GGAGAGGTCGGGGAGAGG 60.124 72.222 0.00 0.00 0.00 3.69
43 44 2.691779 GGAGAGGTCGGGGAGAGGA 61.692 68.421 0.00 0.00 0.00 3.71
44 45 1.454295 GAGAGGTCGGGGAGAGGAC 60.454 68.421 0.00 0.00 0.00 3.85
45 46 2.829458 GAGGTCGGGGAGAGGACG 60.829 72.222 0.00 0.00 33.99 4.79
46 47 3.336568 AGGTCGGGGAGAGGACGA 61.337 66.667 0.00 0.00 33.99 4.20
47 48 2.829458 GGTCGGGGAGAGGACGAG 60.829 72.222 0.00 0.00 37.30 4.18
48 49 2.271497 GTCGGGGAGAGGACGAGA 59.729 66.667 0.00 0.00 37.30 4.04
49 50 1.820481 GTCGGGGAGAGGACGAGAG 60.820 68.421 0.00 0.00 37.30 3.20
50 51 3.213402 CGGGGAGAGGACGAGAGC 61.213 72.222 0.00 0.00 0.00 4.09
51 52 3.213402 GGGGAGAGGACGAGAGCG 61.213 72.222 0.00 0.00 44.79 5.03
52 53 3.213402 GGGAGAGGACGAGAGCGG 61.213 72.222 0.00 0.00 43.17 5.52
77 78 3.695825 GGGGGAGTGGGGAGGAGA 61.696 72.222 0.00 0.00 0.00 3.71
78 79 2.454941 GGGGAGTGGGGAGGAGAA 59.545 66.667 0.00 0.00 0.00 2.87
79 80 1.690985 GGGGAGTGGGGAGGAGAAG 60.691 68.421 0.00 0.00 0.00 2.85
80 81 1.392534 GGGAGTGGGGAGGAGAAGA 59.607 63.158 0.00 0.00 0.00 2.87
81 82 0.252742 GGGAGTGGGGAGGAGAAGAA 60.253 60.000 0.00 0.00 0.00 2.52
82 83 0.906066 GGAGTGGGGAGGAGAAGAAC 59.094 60.000 0.00 0.00 0.00 3.01
83 84 0.533032 GAGTGGGGAGGAGAAGAACG 59.467 60.000 0.00 0.00 0.00 3.95
84 85 0.114560 AGTGGGGAGGAGAAGAACGA 59.885 55.000 0.00 0.00 0.00 3.85
85 86 0.974383 GTGGGGAGGAGAAGAACGAA 59.026 55.000 0.00 0.00 0.00 3.85
86 87 1.066787 GTGGGGAGGAGAAGAACGAAG 60.067 57.143 0.00 0.00 0.00 3.79
87 88 1.203137 TGGGGAGGAGAAGAACGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
88 89 1.205179 GGGGAGGAGAAGAACGAAGAC 59.795 57.143 0.00 0.00 0.00 3.01
89 90 1.893801 GGGAGGAGAAGAACGAAGACA 59.106 52.381 0.00 0.00 0.00 3.41
90 91 2.299297 GGGAGGAGAAGAACGAAGACAA 59.701 50.000 0.00 0.00 0.00 3.18
91 92 3.580731 GGAGGAGAAGAACGAAGACAAG 58.419 50.000 0.00 0.00 0.00 3.16
92 93 3.580731 GAGGAGAAGAACGAAGACAAGG 58.419 50.000 0.00 0.00 0.00 3.61
93 94 3.231818 AGGAGAAGAACGAAGACAAGGA 58.768 45.455 0.00 0.00 0.00 3.36
94 95 3.257127 AGGAGAAGAACGAAGACAAGGAG 59.743 47.826 0.00 0.00 0.00 3.69
95 96 3.580731 GAGAAGAACGAAGACAAGGAGG 58.419 50.000 0.00 0.00 0.00 4.30
96 97 2.966516 AGAAGAACGAAGACAAGGAGGT 59.033 45.455 0.00 0.00 0.00 3.85
97 98 4.150359 AGAAGAACGAAGACAAGGAGGTA 58.850 43.478 0.00 0.00 0.00 3.08
98 99 4.218852 AGAAGAACGAAGACAAGGAGGTAG 59.781 45.833 0.00 0.00 0.00 3.18
99 100 2.826725 AGAACGAAGACAAGGAGGTAGG 59.173 50.000 0.00 0.00 0.00 3.18
100 101 1.558233 ACGAAGACAAGGAGGTAGGG 58.442 55.000 0.00 0.00 0.00 3.53
101 102 0.824759 CGAAGACAAGGAGGTAGGGG 59.175 60.000 0.00 0.00 0.00 4.79
102 103 1.618888 CGAAGACAAGGAGGTAGGGGA 60.619 57.143 0.00 0.00 0.00 4.81
103 104 2.765502 GAAGACAAGGAGGTAGGGGAT 58.234 52.381 0.00 0.00 0.00 3.85
104 105 2.182516 AGACAAGGAGGTAGGGGATG 57.817 55.000 0.00 0.00 0.00 3.51
105 106 1.651770 AGACAAGGAGGTAGGGGATGA 59.348 52.381 0.00 0.00 0.00 2.92
106 107 2.045885 AGACAAGGAGGTAGGGGATGAA 59.954 50.000 0.00 0.00 0.00 2.57
107 108 2.436173 GACAAGGAGGTAGGGGATGAAG 59.564 54.545 0.00 0.00 0.00 3.02
108 109 2.225908 ACAAGGAGGTAGGGGATGAAGT 60.226 50.000 0.00 0.00 0.00 3.01
109 110 2.846827 CAAGGAGGTAGGGGATGAAGTT 59.153 50.000 0.00 0.00 0.00 2.66
110 111 2.482494 AGGAGGTAGGGGATGAAGTTG 58.518 52.381 0.00 0.00 0.00 3.16
111 112 2.197465 GGAGGTAGGGGATGAAGTTGT 58.803 52.381 0.00 0.00 0.00 3.32
112 113 2.092914 GGAGGTAGGGGATGAAGTTGTG 60.093 54.545 0.00 0.00 0.00 3.33
113 114 1.916181 AGGTAGGGGATGAAGTTGTGG 59.084 52.381 0.00 0.00 0.00 4.17
114 115 1.913419 GGTAGGGGATGAAGTTGTGGA 59.087 52.381 0.00 0.00 0.00 4.02
115 116 2.092914 GGTAGGGGATGAAGTTGTGGAG 60.093 54.545 0.00 0.00 0.00 3.86
116 117 2.044793 AGGGGATGAAGTTGTGGAGA 57.955 50.000 0.00 0.00 0.00 3.71
117 118 2.348472 AGGGGATGAAGTTGTGGAGAA 58.652 47.619 0.00 0.00 0.00 2.87
118 119 2.307098 AGGGGATGAAGTTGTGGAGAAG 59.693 50.000 0.00 0.00 0.00 2.85
119 120 2.305927 GGGGATGAAGTTGTGGAGAAGA 59.694 50.000 0.00 0.00 0.00 2.87
120 121 3.054065 GGGGATGAAGTTGTGGAGAAGAT 60.054 47.826 0.00 0.00 0.00 2.40
121 122 4.164221 GGGGATGAAGTTGTGGAGAAGATA 59.836 45.833 0.00 0.00 0.00 1.98
122 123 5.339200 GGGGATGAAGTTGTGGAGAAGATAA 60.339 44.000 0.00 0.00 0.00 1.75
123 124 5.819901 GGGATGAAGTTGTGGAGAAGATAAG 59.180 44.000 0.00 0.00 0.00 1.73
124 125 5.819901 GGATGAAGTTGTGGAGAAGATAAGG 59.180 44.000 0.00 0.00 0.00 2.69
125 126 5.825593 TGAAGTTGTGGAGAAGATAAGGT 57.174 39.130 0.00 0.00 0.00 3.50
126 127 5.551233 TGAAGTTGTGGAGAAGATAAGGTG 58.449 41.667 0.00 0.00 0.00 4.00
127 128 4.559862 AGTTGTGGAGAAGATAAGGTGG 57.440 45.455 0.00 0.00 0.00 4.61
128 129 3.264450 AGTTGTGGAGAAGATAAGGTGGG 59.736 47.826 0.00 0.00 0.00 4.61
129 130 2.196595 TGTGGAGAAGATAAGGTGGGG 58.803 52.381 0.00 0.00 0.00 4.96
130 131 2.197465 GTGGAGAAGATAAGGTGGGGT 58.803 52.381 0.00 0.00 0.00 4.95
131 132 3.246203 TGTGGAGAAGATAAGGTGGGGTA 60.246 47.826 0.00 0.00 0.00 3.69
132 133 3.388350 GTGGAGAAGATAAGGTGGGGTAG 59.612 52.174 0.00 0.00 0.00 3.18
133 134 2.973406 GGAGAAGATAAGGTGGGGTAGG 59.027 54.545 0.00 0.00 0.00 3.18
134 135 2.973406 GAGAAGATAAGGTGGGGTAGGG 59.027 54.545 0.00 0.00 0.00 3.53
135 136 2.595380 AGAAGATAAGGTGGGGTAGGGA 59.405 50.000 0.00 0.00 0.00 4.20
136 137 3.212397 AGAAGATAAGGTGGGGTAGGGAT 59.788 47.826 0.00 0.00 0.00 3.85
137 138 4.426023 AGAAGATAAGGTGGGGTAGGGATA 59.574 45.833 0.00 0.00 0.00 2.59
138 139 4.143406 AGATAAGGTGGGGTAGGGATAC 57.857 50.000 0.00 0.00 0.00 2.24
139 140 3.473621 AGATAAGGTGGGGTAGGGATACA 59.526 47.826 0.00 0.00 39.74 2.29
140 141 1.889174 AAGGTGGGGTAGGGATACAC 58.111 55.000 0.00 0.00 39.74 2.90
141 142 0.398098 AGGTGGGGTAGGGATACACG 60.398 60.000 0.00 0.00 39.74 4.49
142 143 1.444672 GTGGGGTAGGGATACACGC 59.555 63.158 0.00 0.00 39.74 5.34
143 144 2.129146 TGGGGTAGGGATACACGCG 61.129 63.158 3.53 3.53 39.74 6.01
144 145 2.129785 GGGGTAGGGATACACGCGT 61.130 63.158 5.58 5.58 39.74 6.01
145 146 1.361632 GGGTAGGGATACACGCGTC 59.638 63.158 9.86 0.00 39.74 5.19
146 147 1.105759 GGGTAGGGATACACGCGTCT 61.106 60.000 9.86 4.68 39.74 4.18
147 148 0.310232 GGTAGGGATACACGCGTCTC 59.690 60.000 9.86 6.61 39.74 3.36
148 149 1.019673 GTAGGGATACACGCGTCTCA 58.980 55.000 9.86 0.00 39.74 3.27
149 150 1.019673 TAGGGATACACGCGTCTCAC 58.980 55.000 9.86 8.07 39.74 3.51
150 151 1.585521 GGGATACACGCGTCTCACG 60.586 63.158 9.86 0.00 41.84 4.35
175 176 3.905678 CGGTTTGGTGGGCGCAAA 61.906 61.111 10.83 0.00 0.00 3.68
176 177 2.501610 GGTTTGGTGGGCGCAAAA 59.498 55.556 10.83 0.05 0.00 2.44
177 178 1.594021 GGTTTGGTGGGCGCAAAAG 60.594 57.895 10.83 0.00 0.00 2.27
178 179 1.594021 GTTTGGTGGGCGCAAAAGG 60.594 57.895 10.83 0.00 0.00 3.11
179 180 3.453070 TTTGGTGGGCGCAAAAGGC 62.453 57.895 10.83 0.00 39.90 4.35
187 188 4.705519 CGCAAAAGGCCAGCGTGG 62.706 66.667 19.41 0.25 45.82 4.94
204 205 4.814294 GCACGAGACCGGCCGAAT 62.814 66.667 30.73 15.31 40.78 3.34
205 206 2.125673 CACGAGACCGGCCGAATT 60.126 61.111 30.73 10.69 40.78 2.17
206 207 1.740296 CACGAGACCGGCCGAATTT 60.740 57.895 30.73 9.77 40.78 1.82
207 208 1.004200 ACGAGACCGGCCGAATTTT 60.004 52.632 30.73 5.27 40.78 1.82
208 209 1.017701 ACGAGACCGGCCGAATTTTC 61.018 55.000 30.73 13.85 40.78 2.29
218 219 4.109693 GAATTTTCGGCCGGCGCA 62.110 61.111 27.83 6.00 36.38 6.09
219 220 4.413800 AATTTTCGGCCGGCGCAC 62.414 61.111 27.83 5.60 36.38 5.34
232 233 2.331098 CGCACCGCACACAAACAT 59.669 55.556 0.00 0.00 0.00 2.71
233 234 1.299014 CGCACCGCACACAAACATT 60.299 52.632 0.00 0.00 0.00 2.71
234 235 0.040870 CGCACCGCACACAAACATTA 60.041 50.000 0.00 0.00 0.00 1.90
235 236 1.404477 GCACCGCACACAAACATTAC 58.596 50.000 0.00 0.00 0.00 1.89
236 237 1.928595 GCACCGCACACAAACATTACC 60.929 52.381 0.00 0.00 0.00 2.85
237 238 0.955905 ACCGCACACAAACATTACCC 59.044 50.000 0.00 0.00 0.00 3.69
238 239 0.955178 CCGCACACAAACATTACCCA 59.045 50.000 0.00 0.00 0.00 4.51
239 240 1.543802 CCGCACACAAACATTACCCAT 59.456 47.619 0.00 0.00 0.00 4.00
240 241 2.750166 CCGCACACAAACATTACCCATA 59.250 45.455 0.00 0.00 0.00 2.74
241 242 3.191581 CCGCACACAAACATTACCCATAA 59.808 43.478 0.00 0.00 0.00 1.90
242 243 4.321304 CCGCACACAAACATTACCCATAAA 60.321 41.667 0.00 0.00 0.00 1.40
243 244 5.223382 CGCACACAAACATTACCCATAAAA 58.777 37.500 0.00 0.00 0.00 1.52
244 245 5.692204 CGCACACAAACATTACCCATAAAAA 59.308 36.000 0.00 0.00 0.00 1.94
245 246 6.367422 CGCACACAAACATTACCCATAAAAAT 59.633 34.615 0.00 0.00 0.00 1.82
246 247 7.542477 CGCACACAAACATTACCCATAAAAATA 59.458 33.333 0.00 0.00 0.00 1.40
247 248 9.377312 GCACACAAACATTACCCATAAAAATAT 57.623 29.630 0.00 0.00 0.00 1.28
301 302 9.816354 AGCTTTAAAATGTTCACAGTTTTACAT 57.184 25.926 10.36 0.00 40.67 2.29
309 310 9.677567 AATGTTCACAGTTTTACATATGTTCAC 57.322 29.630 14.77 8.47 31.40 3.18
310 311 8.214721 TGTTCACAGTTTTACATATGTTCACA 57.785 30.769 14.77 0.00 0.00 3.58
311 312 8.126074 TGTTCACAGTTTTACATATGTTCACAC 58.874 33.333 14.77 6.38 0.00 3.82
312 313 8.342634 GTTCACAGTTTTACATATGTTCACACT 58.657 33.333 14.77 8.52 0.00 3.55
313 314 9.549078 TTCACAGTTTTACATATGTTCACACTA 57.451 29.630 14.77 0.00 0.00 2.74
314 315 9.719355 TCACAGTTTTACATATGTTCACACTAT 57.281 29.630 14.77 0.00 0.00 2.12
315 316 9.973246 CACAGTTTTACATATGTTCACACTATC 57.027 33.333 14.77 0.00 0.00 2.08
316 317 9.944376 ACAGTTTTACATATGTTCACACTATCT 57.056 29.630 14.77 0.00 0.00 1.98
324 325 9.283768 ACATATGTTCACACTATCTTTGTTTCA 57.716 29.630 1.41 0.00 0.00 2.69
327 328 7.857734 TGTTCACACTATCTTTGTTTCAAGA 57.142 32.000 0.00 0.00 0.00 3.02
328 329 8.275015 TGTTCACACTATCTTTGTTTCAAGAA 57.725 30.769 0.00 0.00 0.00 2.52
329 330 8.735315 TGTTCACACTATCTTTGTTTCAAGAAA 58.265 29.630 0.00 0.00 0.00 2.52
330 331 9.567848 GTTCACACTATCTTTGTTTCAAGAAAA 57.432 29.630 0.00 0.00 31.33 2.29
339 340 8.280909 TCTTTGTTTCAAGAAAATATGTTCGC 57.719 30.769 0.00 0.00 32.50 4.70
340 341 7.918033 TCTTTGTTTCAAGAAAATATGTTCGCA 59.082 29.630 0.00 0.00 32.50 5.10
341 342 8.586570 TTTGTTTCAAGAAAATATGTTCGCAT 57.413 26.923 0.00 0.00 35.49 4.73
342 343 8.586570 TTGTTTCAAGAAAATATGTTCGCATT 57.413 26.923 0.00 0.00 34.17 3.56
343 344 8.586570 TGTTTCAAGAAAATATGTTCGCATTT 57.413 26.923 0.00 0.00 34.17 2.32
344 345 9.039870 TGTTTCAAGAAAATATGTTCGCATTTT 57.960 25.926 0.00 0.00 37.12 1.82
345 346 9.516091 GTTTCAAGAAAATATGTTCGCATTTTC 57.484 29.630 10.37 10.37 45.30 2.29
354 355 9.691362 AAATATGTTCGCATTTTCTACAAAACT 57.309 25.926 0.00 0.00 38.94 2.66
355 356 9.691362 AATATGTTCGCATTTTCTACAAAACTT 57.309 25.926 0.00 0.00 38.94 2.66
358 359 8.912787 TGTTCGCATTTTCTACAAAACTTAAA 57.087 26.923 0.00 0.00 34.24 1.52
359 360 9.355215 TGTTCGCATTTTCTACAAAACTTAAAA 57.645 25.926 0.00 0.00 34.24 1.52
411 412 9.574516 ACTAAAACAAAGTCCATCTAGAAATGT 57.425 29.630 0.00 0.00 0.00 2.71
414 415 8.918202 AAACAAAGTCCATCTAGAAATGTACA 57.082 30.769 0.00 0.00 0.00 2.90
415 416 8.918202 AACAAAGTCCATCTAGAAATGTACAA 57.082 30.769 0.00 0.00 0.00 2.41
416 417 8.324163 ACAAAGTCCATCTAGAAATGTACAAC 57.676 34.615 0.00 0.00 0.00 3.32
417 418 7.390718 ACAAAGTCCATCTAGAAATGTACAACC 59.609 37.037 0.00 0.00 0.00 3.77
418 419 6.620877 AGTCCATCTAGAAATGTACAACCA 57.379 37.500 0.00 0.00 0.00 3.67
419 420 7.016153 AGTCCATCTAGAAATGTACAACCAA 57.984 36.000 0.00 0.00 0.00 3.67
420 421 7.458397 AGTCCATCTAGAAATGTACAACCAAA 58.542 34.615 0.00 0.00 0.00 3.28
421 422 7.942341 AGTCCATCTAGAAATGTACAACCAAAA 59.058 33.333 0.00 0.00 0.00 2.44
422 423 8.573035 GTCCATCTAGAAATGTACAACCAAAAA 58.427 33.333 0.00 0.00 0.00 1.94
423 424 8.573035 TCCATCTAGAAATGTACAACCAAAAAC 58.427 33.333 0.00 0.00 0.00 2.43
424 425 8.356657 CCATCTAGAAATGTACAACCAAAAACA 58.643 33.333 0.00 0.00 0.00 2.83
425 426 9.743057 CATCTAGAAATGTACAACCAAAAACAA 57.257 29.630 0.00 0.00 0.00 2.83
430 431 9.665719 AGAAATGTACAACCAAAAACAAAAGAT 57.334 25.926 0.00 0.00 0.00 2.40
433 434 9.665719 AATGTACAACCAAAAACAAAAGATTCT 57.334 25.926 0.00 0.00 0.00 2.40
434 435 9.665719 ATGTACAACCAAAAACAAAAGATTCTT 57.334 25.926 0.00 0.00 0.00 2.52
435 436 9.495572 TGTACAACCAAAAACAAAAGATTCTTT 57.504 25.926 5.82 5.82 0.00 2.52
438 439 9.061435 ACAACCAAAAACAAAAGATTCTTTTCA 57.939 25.926 19.13 0.00 0.00 2.69
441 442 9.447157 ACCAAAAACAAAAGATTCTTTTCATCA 57.553 25.926 19.13 0.00 0.00 3.07
545 546 9.629878 TGTTAACTATTCCTAAAAAGTGTTCCA 57.370 29.630 7.22 0.00 0.00 3.53
560 561 9.980780 AAAAGTGTTCCAATTTTTATGAAAACG 57.019 25.926 0.00 0.00 38.23 3.60
561 562 8.710835 AAGTGTTCCAATTTTTATGAAAACGT 57.289 26.923 0.00 0.00 37.56 3.99
562 563 8.710835 AGTGTTCCAATTTTTATGAAAACGTT 57.289 26.923 0.00 0.00 37.56 3.99
563 564 9.804758 AGTGTTCCAATTTTTATGAAAACGTTA 57.195 25.926 0.00 0.00 37.56 3.18
599 600 8.821147 AAAATAAGGATTTTTCACGGTTAACC 57.179 30.769 15.13 15.13 41.53 2.85
600 601 7.770366 AATAAGGATTTTTCACGGTTAACCT 57.230 32.000 22.12 6.91 0.00 3.50
601 602 7.770366 ATAAGGATTTTTCACGGTTAACCTT 57.230 32.000 22.12 10.66 38.49 3.50
602 603 8.866970 ATAAGGATTTTTCACGGTTAACCTTA 57.133 30.769 22.12 9.54 40.22 2.69
603 604 7.770366 AAGGATTTTTCACGGTTAACCTTAT 57.230 32.000 22.12 5.15 34.18 1.73
604 605 7.770366 AGGATTTTTCACGGTTAACCTTATT 57.230 32.000 22.12 1.30 0.00 1.40
605 606 8.866970 AGGATTTTTCACGGTTAACCTTATTA 57.133 30.769 22.12 2.59 0.00 0.98
606 607 9.470399 AGGATTTTTCACGGTTAACCTTATTAT 57.530 29.630 22.12 7.08 0.00 1.28
607 608 9.511144 GGATTTTTCACGGTTAACCTTATTATG 57.489 33.333 22.12 7.43 0.00 1.90
608 609 9.511144 GATTTTTCACGGTTAACCTTATTATGG 57.489 33.333 22.12 6.71 0.00 2.74
609 610 8.632906 TTTTTCACGGTTAACCTTATTATGGA 57.367 30.769 22.12 3.02 0.00 3.41
610 611 7.614124 TTTCACGGTTAACCTTATTATGGAC 57.386 36.000 22.12 0.00 0.00 4.02
611 612 6.297080 TCACGGTTAACCTTATTATGGACA 57.703 37.500 22.12 0.00 0.00 4.02
612 613 6.891388 TCACGGTTAACCTTATTATGGACAT 58.109 36.000 22.12 0.00 0.00 3.06
613 614 7.340256 TCACGGTTAACCTTATTATGGACATT 58.660 34.615 22.12 0.00 0.00 2.71
614 615 7.830201 TCACGGTTAACCTTATTATGGACATTT 59.170 33.333 22.12 0.00 0.00 2.32
615 616 9.111613 CACGGTTAACCTTATTATGGACATTTA 57.888 33.333 22.12 0.00 0.00 1.40
616 617 9.856162 ACGGTTAACCTTATTATGGACATTTAT 57.144 29.630 22.12 0.00 0.00 1.40
651 652 1.361793 AAAATGATGCACAATGGCGC 58.638 45.000 0.00 0.00 36.28 6.53
652 653 0.246910 AAATGATGCACAATGGCGCA 59.753 45.000 10.83 2.19 43.45 6.09
655 656 3.605895 ATGCACAATGGCGCATGA 58.394 50.000 10.83 0.00 46.78 3.07
656 657 1.891616 ATGCACAATGGCGCATGAA 59.108 47.368 10.83 0.00 46.78 2.57
657 658 0.179121 ATGCACAATGGCGCATGAAG 60.179 50.000 10.83 5.00 46.78 3.02
658 659 2.162754 GCACAATGGCGCATGAAGC 61.163 57.895 10.83 10.96 40.87 3.86
659 660 1.509463 CACAATGGCGCATGAAGCT 59.491 52.632 10.83 0.00 42.61 3.74
660 661 0.800683 CACAATGGCGCATGAAGCTG 60.801 55.000 10.83 6.66 42.61 4.24
661 662 1.226859 CAATGGCGCATGAAGCTGG 60.227 57.895 10.83 0.00 42.61 4.85
662 663 1.679977 AATGGCGCATGAAGCTGGT 60.680 52.632 10.83 0.00 42.61 4.00
663 664 1.252904 AATGGCGCATGAAGCTGGTT 61.253 50.000 10.83 0.00 42.61 3.67
664 665 1.940883 ATGGCGCATGAAGCTGGTTG 61.941 55.000 10.83 0.00 42.61 3.77
665 666 2.629656 GGCGCATGAAGCTGGTTGT 61.630 57.895 10.83 0.00 42.61 3.32
666 667 1.443194 GCGCATGAAGCTGGTTGTG 60.443 57.895 0.30 0.00 42.61 3.33
667 668 1.443194 CGCATGAAGCTGGTTGTGC 60.443 57.895 13.45 13.45 42.61 4.57
668 669 1.080298 GCATGAAGCTGGTTGTGCC 60.080 57.895 12.79 0.00 41.15 5.01
669 670 1.530013 GCATGAAGCTGGTTGTGCCT 61.530 55.000 12.79 0.00 41.15 4.75
670 671 0.963962 CATGAAGCTGGTTGTGCCTT 59.036 50.000 0.00 0.00 38.35 4.35
671 672 1.342174 CATGAAGCTGGTTGTGCCTTT 59.658 47.619 0.00 0.00 38.35 3.11
672 673 1.484038 TGAAGCTGGTTGTGCCTTTT 58.516 45.000 0.00 0.00 38.35 2.27
673 674 1.830477 TGAAGCTGGTTGTGCCTTTTT 59.170 42.857 0.00 0.00 38.35 1.94
694 695 4.403137 CACGGTGCAACGCATGGG 62.403 66.667 26.87 8.44 41.91 4.00
697 698 3.988525 GGTGCAACGCATGGGCAA 61.989 61.111 10.10 0.00 41.91 4.52
698 699 2.262292 GTGCAACGCATGGGCAAT 59.738 55.556 10.10 0.00 41.91 3.56
699 700 1.374505 GTGCAACGCATGGGCAATT 60.375 52.632 10.10 0.00 41.91 2.32
700 701 0.950071 GTGCAACGCATGGGCAATTT 60.950 50.000 10.10 0.00 41.91 1.82
701 702 0.250209 TGCAACGCATGGGCAATTTT 60.250 45.000 10.10 0.00 41.24 1.82
702 703 0.873721 GCAACGCATGGGCAATTTTT 59.126 45.000 10.10 0.00 41.24 1.94
703 704 1.136000 GCAACGCATGGGCAATTTTTC 60.136 47.619 10.10 0.00 41.24 2.29
704 705 2.415776 CAACGCATGGGCAATTTTTCT 58.584 42.857 10.10 0.00 41.24 2.52
705 706 3.583806 CAACGCATGGGCAATTTTTCTA 58.416 40.909 10.10 0.00 41.24 2.10
706 707 3.508744 ACGCATGGGCAATTTTTCTAG 57.491 42.857 10.10 0.00 41.24 2.43
803 807 0.251341 AAAAAGCGATCCAGTGGGCT 60.251 50.000 9.92 7.51 37.33 5.19
2306 2934 2.037251 TCTTTAGGCTCGCTGTCTTGTT 59.963 45.455 0.00 0.00 0.00 2.83
2322 2950 8.801913 GCTGTCTTGTTGCATTTAAAGATATTC 58.198 33.333 0.00 0.00 31.73 1.75
2415 3168 8.677148 ATCAATTGTAATACTGCGATACCTTT 57.323 30.769 5.13 0.00 0.00 3.11
2773 3540 9.936329 AGGAATATTAATGTTCCATTTGGTAGT 57.064 29.630 33.03 15.24 46.73 2.73
3240 4015 5.560724 AGAAATAGCAAGCACAGGTTAGAA 58.439 37.500 0.00 0.00 0.00 2.10
3300 4075 0.107993 GCATAGTGGTCTGCTCAGCA 60.108 55.000 0.00 0.00 35.49 4.41
3568 4489 3.743567 TTTTGTAAACGTCGCTGTGTT 57.256 38.095 0.00 0.00 0.00 3.32
3582 4503 3.308595 CGCTGTGTTGAAGTTTGTCACTA 59.691 43.478 0.00 0.00 32.94 2.74
3583 4504 4.201773 CGCTGTGTTGAAGTTTGTCACTAA 60.202 41.667 0.00 0.00 32.94 2.24
3633 4559 6.976349 TCCATGTGTATAACTGCTTAGTTACG 59.024 38.462 2.33 0.00 37.13 3.18
3733 4664 9.863845 GGCAATTAACCTAAACTGCTTTATTTA 57.136 29.630 0.00 0.00 33.53 1.40
4142 5084 3.879295 CTCAAGTGGCAAGAAGAGAACAA 59.121 43.478 0.00 0.00 0.00 2.83
4143 5085 3.627577 TCAAGTGGCAAGAAGAGAACAAC 59.372 43.478 0.00 0.00 0.00 3.32
4144 5086 3.281727 AGTGGCAAGAAGAGAACAACA 57.718 42.857 0.00 0.00 0.00 3.33
4516 6229 1.644509 TCACACACCTGGTAGCATCT 58.355 50.000 0.00 0.00 0.00 2.90
4517 6230 1.977854 TCACACACCTGGTAGCATCTT 59.022 47.619 0.00 0.00 0.00 2.40
4570 6283 9.674824 CCTTGCAAATCTATTCAATCAAGATAC 57.325 33.333 0.00 0.00 33.52 2.24
4709 6803 5.116180 ACTCAATGGATGTACATGTTACCG 58.884 41.667 14.43 0.00 0.00 4.02
4752 6846 1.070914 TGGATGCCGAGTTGTGTGTTA 59.929 47.619 0.00 0.00 0.00 2.41
4767 6861 2.371841 TGTGTTATTGGTCTCCTGCTGT 59.628 45.455 0.00 0.00 0.00 4.40
4771 6865 1.495579 ATTGGTCTCCTGCTGTGGCT 61.496 55.000 0.00 0.00 39.59 4.75
4772 6866 2.046507 GGTCTCCTGCTGTGGCTG 60.047 66.667 0.00 0.00 39.59 4.85
4773 6867 2.745492 GTCTCCTGCTGTGGCTGC 60.745 66.667 0.00 0.00 39.59 5.25
4774 6868 2.926779 TCTCCTGCTGTGGCTGCT 60.927 61.111 0.00 0.00 39.59 4.24
4775 6869 2.746671 CTCCTGCTGTGGCTGCTG 60.747 66.667 0.00 0.00 39.59 4.41
5316 7416 7.095899 GGATTTGTTCAAAATCTGAGCACTTTC 60.096 37.037 9.87 0.00 44.07 2.62
5344 7444 9.950680 TGTCTGATTGTTTTTCTTTCTATTGAC 57.049 29.630 0.00 0.00 0.00 3.18
5407 7507 0.984230 AAGCTGCTGTACTGGCCTTA 59.016 50.000 1.35 0.00 0.00 2.69
5473 7575 6.268566 GCATCAGTGCCTATTTTTAAAGGAG 58.731 40.000 0.00 0.00 45.76 3.69
5501 7603 6.856135 GCCTAATTAAGCGTTTACCTGTAT 57.144 37.500 0.00 0.00 0.00 2.29
5555 7657 9.103861 CTGGTTTATTTCTCTAAACATCTCCTC 57.896 37.037 8.47 0.00 41.36 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.651980 CTTCCCCTCCTGCAAGCCC 62.652 68.421 0.00 0.00 0.00 5.19
8 9 2.044551 CTTCCCCTCCTGCAAGCC 60.045 66.667 0.00 0.00 0.00 4.35
9 10 2.044551 CCTTCCCCTCCTGCAAGC 60.045 66.667 0.00 0.00 0.00 4.01
10 11 0.911525 TCTCCTTCCCCTCCTGCAAG 60.912 60.000 0.00 0.00 0.00 4.01
11 12 0.911525 CTCTCCTTCCCCTCCTGCAA 60.912 60.000 0.00 0.00 0.00 4.08
12 13 1.306482 CTCTCCTTCCCCTCCTGCA 60.306 63.158 0.00 0.00 0.00 4.41
13 14 2.069430 CCTCTCCTTCCCCTCCTGC 61.069 68.421 0.00 0.00 0.00 4.85
14 15 0.689412 GACCTCTCCTTCCCCTCCTG 60.689 65.000 0.00 0.00 0.00 3.86
15 16 1.707200 GACCTCTCCTTCCCCTCCT 59.293 63.158 0.00 0.00 0.00 3.69
16 17 1.758906 CGACCTCTCCTTCCCCTCC 60.759 68.421 0.00 0.00 0.00 4.30
17 18 1.758906 CCGACCTCTCCTTCCCCTC 60.759 68.421 0.00 0.00 0.00 4.30
18 19 2.364961 CCGACCTCTCCTTCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
19 20 2.764547 CCCGACCTCTCCTTCCCC 60.765 72.222 0.00 0.00 0.00 4.81
20 21 2.764547 CCCCGACCTCTCCTTCCC 60.765 72.222 0.00 0.00 0.00 3.97
21 22 1.758906 CTCCCCGACCTCTCCTTCC 60.759 68.421 0.00 0.00 0.00 3.46
22 23 0.753848 CTCTCCCCGACCTCTCCTTC 60.754 65.000 0.00 0.00 0.00 3.46
23 24 1.308326 CTCTCCCCGACCTCTCCTT 59.692 63.158 0.00 0.00 0.00 3.36
24 25 2.695970 CCTCTCCCCGACCTCTCCT 61.696 68.421 0.00 0.00 0.00 3.69
25 26 2.123640 CCTCTCCCCGACCTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
26 27 1.454295 GTCCTCTCCCCGACCTCTC 60.454 68.421 0.00 0.00 0.00 3.20
27 28 2.684735 GTCCTCTCCCCGACCTCT 59.315 66.667 0.00 0.00 0.00 3.69
28 29 2.829458 CGTCCTCTCCCCGACCTC 60.829 72.222 0.00 0.00 0.00 3.85
29 30 3.336568 TCGTCCTCTCCCCGACCT 61.337 66.667 0.00 0.00 0.00 3.85
30 31 2.829458 CTCGTCCTCTCCCCGACC 60.829 72.222 0.00 0.00 0.00 4.79
31 32 1.820481 CTCTCGTCCTCTCCCCGAC 60.820 68.421 0.00 0.00 0.00 4.79
32 33 2.590645 CTCTCGTCCTCTCCCCGA 59.409 66.667 0.00 0.00 0.00 5.14
33 34 3.213402 GCTCTCGTCCTCTCCCCG 61.213 72.222 0.00 0.00 0.00 5.73
34 35 3.213402 CGCTCTCGTCCTCTCCCC 61.213 72.222 0.00 0.00 0.00 4.81
35 36 3.213402 CCGCTCTCGTCCTCTCCC 61.213 72.222 0.00 0.00 0.00 4.30
36 37 3.894947 GCCGCTCTCGTCCTCTCC 61.895 72.222 0.00 0.00 0.00 3.71
37 38 3.119709 CTGCCGCTCTCGTCCTCTC 62.120 68.421 0.00 0.00 0.00 3.20
38 39 3.137459 CTGCCGCTCTCGTCCTCT 61.137 66.667 0.00 0.00 0.00 3.69
39 40 4.863925 GCTGCCGCTCTCGTCCTC 62.864 72.222 0.00 0.00 0.00 3.71
60 61 3.268647 TTCTCCTCCCCACTCCCCC 62.269 68.421 0.00 0.00 0.00 5.40
61 62 1.690985 CTTCTCCTCCCCACTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
62 63 0.252742 TTCTTCTCCTCCCCACTCCC 60.253 60.000 0.00 0.00 0.00 4.30
63 64 0.906066 GTTCTTCTCCTCCCCACTCC 59.094 60.000 0.00 0.00 0.00 3.85
64 65 0.533032 CGTTCTTCTCCTCCCCACTC 59.467 60.000 0.00 0.00 0.00 3.51
65 66 0.114560 TCGTTCTTCTCCTCCCCACT 59.885 55.000 0.00 0.00 0.00 4.00
66 67 0.974383 TTCGTTCTTCTCCTCCCCAC 59.026 55.000 0.00 0.00 0.00 4.61
67 68 1.203137 TCTTCGTTCTTCTCCTCCCCA 60.203 52.381 0.00 0.00 0.00 4.96
68 69 1.205179 GTCTTCGTTCTTCTCCTCCCC 59.795 57.143 0.00 0.00 0.00 4.81
69 70 1.893801 TGTCTTCGTTCTTCTCCTCCC 59.106 52.381 0.00 0.00 0.00 4.30
70 71 3.580731 CTTGTCTTCGTTCTTCTCCTCC 58.419 50.000 0.00 0.00 0.00 4.30
71 72 3.256136 TCCTTGTCTTCGTTCTTCTCCTC 59.744 47.826 0.00 0.00 0.00 3.71
72 73 3.231818 TCCTTGTCTTCGTTCTTCTCCT 58.768 45.455 0.00 0.00 0.00 3.69
73 74 3.580731 CTCCTTGTCTTCGTTCTTCTCC 58.419 50.000 0.00 0.00 0.00 3.71
74 75 3.006003 ACCTCCTTGTCTTCGTTCTTCTC 59.994 47.826 0.00 0.00 0.00 2.87
75 76 2.966516 ACCTCCTTGTCTTCGTTCTTCT 59.033 45.455 0.00 0.00 0.00 2.85
76 77 3.388345 ACCTCCTTGTCTTCGTTCTTC 57.612 47.619 0.00 0.00 0.00 2.87
77 78 3.258622 CCTACCTCCTTGTCTTCGTTCTT 59.741 47.826 0.00 0.00 0.00 2.52
78 79 2.826725 CCTACCTCCTTGTCTTCGTTCT 59.173 50.000 0.00 0.00 0.00 3.01
79 80 2.094130 CCCTACCTCCTTGTCTTCGTTC 60.094 54.545 0.00 0.00 0.00 3.95
80 81 1.900486 CCCTACCTCCTTGTCTTCGTT 59.100 52.381 0.00 0.00 0.00 3.85
81 82 1.558233 CCCTACCTCCTTGTCTTCGT 58.442 55.000 0.00 0.00 0.00 3.85
82 83 0.824759 CCCCTACCTCCTTGTCTTCG 59.175 60.000 0.00 0.00 0.00 3.79
83 84 2.249309 TCCCCTACCTCCTTGTCTTC 57.751 55.000 0.00 0.00 0.00 2.87
84 85 2.045885 TCATCCCCTACCTCCTTGTCTT 59.954 50.000 0.00 0.00 0.00 3.01
85 86 1.651770 TCATCCCCTACCTCCTTGTCT 59.348 52.381 0.00 0.00 0.00 3.41
86 87 2.176247 TCATCCCCTACCTCCTTGTC 57.824 55.000 0.00 0.00 0.00 3.18
87 88 2.225908 ACTTCATCCCCTACCTCCTTGT 60.226 50.000 0.00 0.00 0.00 3.16
88 89 2.482494 ACTTCATCCCCTACCTCCTTG 58.518 52.381 0.00 0.00 0.00 3.61
89 90 2.846827 CAACTTCATCCCCTACCTCCTT 59.153 50.000 0.00 0.00 0.00 3.36
90 91 2.225908 ACAACTTCATCCCCTACCTCCT 60.226 50.000 0.00 0.00 0.00 3.69
91 92 2.092914 CACAACTTCATCCCCTACCTCC 60.093 54.545 0.00 0.00 0.00 4.30
92 93 2.092914 CCACAACTTCATCCCCTACCTC 60.093 54.545 0.00 0.00 0.00 3.85
93 94 1.916181 CCACAACTTCATCCCCTACCT 59.084 52.381 0.00 0.00 0.00 3.08
94 95 1.913419 TCCACAACTTCATCCCCTACC 59.087 52.381 0.00 0.00 0.00 3.18
95 96 2.838202 TCTCCACAACTTCATCCCCTAC 59.162 50.000 0.00 0.00 0.00 3.18
96 97 3.199442 TCTCCACAACTTCATCCCCTA 57.801 47.619 0.00 0.00 0.00 3.53
97 98 2.044793 TCTCCACAACTTCATCCCCT 57.955 50.000 0.00 0.00 0.00 4.79
98 99 2.305927 TCTTCTCCACAACTTCATCCCC 59.694 50.000 0.00 0.00 0.00 4.81
99 100 3.703001 TCTTCTCCACAACTTCATCCC 57.297 47.619 0.00 0.00 0.00 3.85
100 101 5.819901 CCTTATCTTCTCCACAACTTCATCC 59.180 44.000 0.00 0.00 0.00 3.51
101 102 6.314896 CACCTTATCTTCTCCACAACTTCATC 59.685 42.308 0.00 0.00 0.00 2.92
102 103 6.176183 CACCTTATCTTCTCCACAACTTCAT 58.824 40.000 0.00 0.00 0.00 2.57
103 104 5.513094 CCACCTTATCTTCTCCACAACTTCA 60.513 44.000 0.00 0.00 0.00 3.02
104 105 4.938226 CCACCTTATCTTCTCCACAACTTC 59.062 45.833 0.00 0.00 0.00 3.01
105 106 4.263506 CCCACCTTATCTTCTCCACAACTT 60.264 45.833 0.00 0.00 0.00 2.66
106 107 3.264450 CCCACCTTATCTTCTCCACAACT 59.736 47.826 0.00 0.00 0.00 3.16
107 108 3.610911 CCCACCTTATCTTCTCCACAAC 58.389 50.000 0.00 0.00 0.00 3.32
108 109 2.576191 CCCCACCTTATCTTCTCCACAA 59.424 50.000 0.00 0.00 0.00 3.33
109 110 2.196595 CCCCACCTTATCTTCTCCACA 58.803 52.381 0.00 0.00 0.00 4.17
110 111 2.197465 ACCCCACCTTATCTTCTCCAC 58.803 52.381 0.00 0.00 0.00 4.02
111 112 2.661176 ACCCCACCTTATCTTCTCCA 57.339 50.000 0.00 0.00 0.00 3.86
112 113 2.973406 CCTACCCCACCTTATCTTCTCC 59.027 54.545 0.00 0.00 0.00 3.71
113 114 2.973406 CCCTACCCCACCTTATCTTCTC 59.027 54.545 0.00 0.00 0.00 2.87
114 115 2.595380 TCCCTACCCCACCTTATCTTCT 59.405 50.000 0.00 0.00 0.00 2.85
115 116 3.056201 TCCCTACCCCACCTTATCTTC 57.944 52.381 0.00 0.00 0.00 2.87
116 117 3.745678 ATCCCTACCCCACCTTATCTT 57.254 47.619 0.00 0.00 0.00 2.40
117 118 3.473621 TGTATCCCTACCCCACCTTATCT 59.526 47.826 0.00 0.00 0.00 1.98
118 119 3.581770 GTGTATCCCTACCCCACCTTATC 59.418 52.174 0.00 0.00 0.00 1.75
119 120 3.595021 GTGTATCCCTACCCCACCTTAT 58.405 50.000 0.00 0.00 0.00 1.73
120 121 2.690632 CGTGTATCCCTACCCCACCTTA 60.691 54.545 0.00 0.00 0.00 2.69
121 122 1.889174 GTGTATCCCTACCCCACCTT 58.111 55.000 0.00 0.00 0.00 3.50
122 123 0.398098 CGTGTATCCCTACCCCACCT 60.398 60.000 0.00 0.00 0.00 4.00
123 124 2.036428 GCGTGTATCCCTACCCCACC 62.036 65.000 0.00 0.00 0.00 4.61
124 125 1.444672 GCGTGTATCCCTACCCCAC 59.555 63.158 0.00 0.00 0.00 4.61
125 126 2.129146 CGCGTGTATCCCTACCCCA 61.129 63.158 0.00 0.00 0.00 4.96
126 127 2.080222 GACGCGTGTATCCCTACCCC 62.080 65.000 20.70 0.00 0.00 4.95
127 128 1.105759 AGACGCGTGTATCCCTACCC 61.106 60.000 20.70 0.00 0.00 3.69
128 129 0.310232 GAGACGCGTGTATCCCTACC 59.690 60.000 20.70 0.00 29.97 3.18
129 130 1.019673 TGAGACGCGTGTATCCCTAC 58.980 55.000 20.70 0.00 35.44 3.18
130 131 1.019673 GTGAGACGCGTGTATCCCTA 58.980 55.000 20.70 0.00 35.44 3.53
131 132 1.807886 GTGAGACGCGTGTATCCCT 59.192 57.895 20.70 5.89 35.44 4.20
132 133 1.585521 CGTGAGACGCGTGTATCCC 60.586 63.158 20.70 8.68 35.44 3.85
133 134 3.978373 CGTGAGACGCGTGTATCC 58.022 61.111 20.70 10.88 35.44 2.59
158 159 3.432051 TTTTGCGCCCACCAAACCG 62.432 57.895 4.18 0.00 32.40 4.44
159 160 1.594021 CTTTTGCGCCCACCAAACC 60.594 57.895 4.18 0.00 32.40 3.27
160 161 1.594021 CCTTTTGCGCCCACCAAAC 60.594 57.895 4.18 0.00 32.40 2.93
161 162 2.818132 CCTTTTGCGCCCACCAAA 59.182 55.556 4.18 0.00 0.00 3.28
162 163 3.922640 GCCTTTTGCGCCCACCAA 61.923 61.111 4.18 0.00 0.00 3.67
165 166 4.362476 CTGGCCTTTTGCGCCCAC 62.362 66.667 4.18 0.00 46.48 4.61
187 188 4.814294 ATTCGGCCGGTCTCGTGC 62.814 66.667 27.83 0.00 33.95 5.34
188 189 1.296056 AAAATTCGGCCGGTCTCGTG 61.296 55.000 27.83 0.00 33.95 4.35
189 190 1.004200 AAAATTCGGCCGGTCTCGT 60.004 52.632 27.83 3.57 33.95 4.18
190 191 1.713830 GAAAATTCGGCCGGTCTCG 59.286 57.895 27.83 6.04 0.00 4.04
191 192 1.713830 CGAAAATTCGGCCGGTCTC 59.286 57.895 27.83 13.75 46.30 3.36
192 193 3.884900 CGAAAATTCGGCCGGTCT 58.115 55.556 27.83 7.31 46.30 3.85
201 202 4.109693 TGCGCCGGCCGAAAATTC 62.110 61.111 30.73 9.72 40.02 2.17
202 203 4.413800 GTGCGCCGGCCGAAAATT 62.414 61.111 30.73 0.00 40.02 1.82
215 216 0.040870 TAATGTTTGTGTGCGGTGCG 60.041 50.000 0.00 0.00 0.00 5.34
216 217 1.404477 GTAATGTTTGTGTGCGGTGC 58.596 50.000 0.00 0.00 0.00 5.01
217 218 1.335506 GGGTAATGTTTGTGTGCGGTG 60.336 52.381 0.00 0.00 0.00 4.94
218 219 0.955905 GGGTAATGTTTGTGTGCGGT 59.044 50.000 0.00 0.00 0.00 5.68
219 220 0.955178 TGGGTAATGTTTGTGTGCGG 59.045 50.000 0.00 0.00 0.00 5.69
220 221 4.427096 TTATGGGTAATGTTTGTGTGCG 57.573 40.909 0.00 0.00 0.00 5.34
221 222 7.665561 ATTTTTATGGGTAATGTTTGTGTGC 57.334 32.000 0.00 0.00 0.00 4.57
275 276 9.816354 ATGTAAAACTGTGAACATTTTAAAGCT 57.184 25.926 0.00 0.00 31.47 3.74
283 284 9.677567 GTGAACATATGTAAAACTGTGAACATT 57.322 29.630 9.21 0.00 34.54 2.71
284 285 8.845227 TGTGAACATATGTAAAACTGTGAACAT 58.155 29.630 9.21 7.70 36.56 2.71
285 286 8.126074 GTGTGAACATATGTAAAACTGTGAACA 58.874 33.333 9.21 0.00 0.00 3.18
286 287 8.342634 AGTGTGAACATATGTAAAACTGTGAAC 58.657 33.333 9.21 2.62 0.00 3.18
287 288 8.445275 AGTGTGAACATATGTAAAACTGTGAA 57.555 30.769 9.21 0.00 0.00 3.18
288 289 9.719355 ATAGTGTGAACATATGTAAAACTGTGA 57.281 29.630 18.34 5.41 0.00 3.58
289 290 9.973246 GATAGTGTGAACATATGTAAAACTGTG 57.027 33.333 18.34 0.00 0.00 3.66
290 291 9.944376 AGATAGTGTGAACATATGTAAAACTGT 57.056 29.630 18.34 14.06 0.00 3.55
298 299 9.283768 TGAAACAAAGATAGTGTGAACATATGT 57.716 29.630 1.41 1.41 0.00 2.29
301 302 9.554395 TCTTGAAACAAAGATAGTGTGAACATA 57.446 29.630 0.00 0.00 31.19 2.29
302 303 8.450578 TCTTGAAACAAAGATAGTGTGAACAT 57.549 30.769 0.00 0.00 31.19 2.71
303 304 7.857734 TCTTGAAACAAAGATAGTGTGAACA 57.142 32.000 0.00 0.00 31.19 3.18
304 305 9.567848 TTTTCTTGAAACAAAGATAGTGTGAAC 57.432 29.630 0.00 0.00 36.12 3.18
313 314 8.915654 GCGAACATATTTTCTTGAAACAAAGAT 58.084 29.630 0.43 0.00 36.12 2.40
314 315 7.918033 TGCGAACATATTTTCTTGAAACAAAGA 59.082 29.630 0.43 0.00 34.36 2.52
315 316 8.060020 TGCGAACATATTTTCTTGAAACAAAG 57.940 30.769 0.43 0.00 0.00 2.77
316 317 7.993821 TGCGAACATATTTTCTTGAAACAAA 57.006 28.000 0.43 0.00 0.00 2.83
317 318 8.586570 AATGCGAACATATTTTCTTGAAACAA 57.413 26.923 0.43 0.00 34.62 2.83
318 319 8.586570 AAATGCGAACATATTTTCTTGAAACA 57.413 26.923 0.43 0.00 34.62 2.83
319 320 9.516091 GAAAATGCGAACATATTTTCTTGAAAC 57.484 29.630 12.62 0.00 44.19 2.78
328 329 9.691362 AGTTTTGTAGAAAATGCGAACATATTT 57.309 25.926 0.63 0.00 34.62 1.40
329 330 9.691362 AAGTTTTGTAGAAAATGCGAACATATT 57.309 25.926 0.63 0.00 34.62 1.28
332 333 9.522804 TTTAAGTTTTGTAGAAAATGCGAACAT 57.477 25.926 0.63 0.00 38.49 2.71
333 334 8.912787 TTTAAGTTTTGTAGAAAATGCGAACA 57.087 26.923 0.63 0.00 33.63 3.18
385 386 9.574516 ACATTTCTAGATGGACTTTGTTTTAGT 57.425 29.630 0.00 0.00 0.00 2.24
388 389 9.349713 TGTACATTTCTAGATGGACTTTGTTTT 57.650 29.630 9.59 0.00 40.76 2.43
389 390 8.918202 TGTACATTTCTAGATGGACTTTGTTT 57.082 30.769 9.59 0.00 40.76 2.83
390 391 8.784043 GTTGTACATTTCTAGATGGACTTTGTT 58.216 33.333 9.59 0.00 40.76 2.83
391 392 7.390718 GGTTGTACATTTCTAGATGGACTTTGT 59.609 37.037 9.59 2.47 40.76 2.83
392 393 7.390440 TGGTTGTACATTTCTAGATGGACTTTG 59.610 37.037 9.59 0.00 40.76 2.77
393 394 7.458397 TGGTTGTACATTTCTAGATGGACTTT 58.542 34.615 9.59 0.00 40.76 2.66
394 395 7.016153 TGGTTGTACATTTCTAGATGGACTT 57.984 36.000 9.59 0.00 40.76 3.01
395 396 6.620877 TGGTTGTACATTTCTAGATGGACT 57.379 37.500 9.59 0.00 40.76 3.85
396 397 7.681939 TTTGGTTGTACATTTCTAGATGGAC 57.318 36.000 0.00 2.19 40.58 4.02
397 398 8.573035 GTTTTTGGTTGTACATTTCTAGATGGA 58.427 33.333 0.00 0.00 0.00 3.41
398 399 8.356657 TGTTTTTGGTTGTACATTTCTAGATGG 58.643 33.333 0.00 0.00 0.00 3.51
399 400 9.743057 TTGTTTTTGGTTGTACATTTCTAGATG 57.257 29.630 0.00 0.00 0.00 2.90
404 405 9.665719 ATCTTTTGTTTTTGGTTGTACATTTCT 57.334 25.926 0.00 0.00 0.00 2.52
407 408 9.665719 AGAATCTTTTGTTTTTGGTTGTACATT 57.334 25.926 0.00 0.00 0.00 2.71
408 409 9.665719 AAGAATCTTTTGTTTTTGGTTGTACAT 57.334 25.926 0.00 0.00 0.00 2.29
409 410 9.495572 AAAGAATCTTTTGTTTTTGGTTGTACA 57.504 25.926 1.80 0.00 0.00 2.90
412 413 9.061435 TGAAAAGAATCTTTTGTTTTTGGTTGT 57.939 25.926 23.81 0.00 38.14 3.32
415 416 9.447157 TGATGAAAAGAATCTTTTGTTTTTGGT 57.553 25.926 23.81 0.00 38.14 3.67
519 520 9.629878 TGGAACACTTTTTAGGAATAGTTAACA 57.370 29.630 8.61 0.00 0.00 2.41
535 536 9.157104 ACGTTTTCATAAAAATTGGAACACTTT 57.843 25.926 0.00 0.00 43.01 2.66
536 537 8.710835 ACGTTTTCATAAAAATTGGAACACTT 57.289 26.923 0.00 0.00 36.77 3.16
537 538 8.710835 AACGTTTTCATAAAAATTGGAACACT 57.289 26.923 0.00 0.00 36.77 3.55
574 575 8.644216 AGGTTAACCGTGAAAAATCCTTATTTT 58.356 29.630 18.91 0.00 42.66 1.82
575 576 8.185506 AGGTTAACCGTGAAAAATCCTTATTT 57.814 30.769 18.91 0.00 42.08 1.40
576 577 7.770366 AGGTTAACCGTGAAAAATCCTTATT 57.230 32.000 18.91 0.00 42.08 1.40
577 578 7.770366 AAGGTTAACCGTGAAAAATCCTTAT 57.230 32.000 18.91 0.00 42.08 1.73
578 579 8.866970 ATAAGGTTAACCGTGAAAAATCCTTA 57.133 30.769 21.65 9.58 42.08 2.69
579 580 7.770366 ATAAGGTTAACCGTGAAAAATCCTT 57.230 32.000 21.65 7.77 42.08 3.36
580 581 7.770366 AATAAGGTTAACCGTGAAAAATCCT 57.230 32.000 21.65 0.00 42.08 3.24
581 582 9.511144 CATAATAAGGTTAACCGTGAAAAATCC 57.489 33.333 21.65 0.00 42.08 3.01
582 583 9.511144 CCATAATAAGGTTAACCGTGAAAAATC 57.489 33.333 21.65 0.00 42.08 2.17
583 584 9.245481 TCCATAATAAGGTTAACCGTGAAAAAT 57.755 29.630 21.65 5.27 42.08 1.82
584 585 8.513774 GTCCATAATAAGGTTAACCGTGAAAAA 58.486 33.333 21.65 3.01 42.08 1.94
585 586 7.664731 TGTCCATAATAAGGTTAACCGTGAAAA 59.335 33.333 21.65 3.39 42.08 2.29
586 587 7.166851 TGTCCATAATAAGGTTAACCGTGAAA 58.833 34.615 21.65 8.64 42.08 2.69
587 588 6.709281 TGTCCATAATAAGGTTAACCGTGAA 58.291 36.000 21.65 4.48 42.08 3.18
588 589 6.297080 TGTCCATAATAAGGTTAACCGTGA 57.703 37.500 21.65 10.51 42.08 4.35
589 590 7.562454 AATGTCCATAATAAGGTTAACCGTG 57.438 36.000 21.65 12.81 42.08 4.94
590 591 9.856162 ATAAATGTCCATAATAAGGTTAACCGT 57.144 29.630 18.91 18.14 42.08 4.83
641 642 4.082192 GCTTCATGCGCCATTGTG 57.918 55.556 4.18 0.00 0.00 3.33
650 651 1.080298 GGCACAACCAGCTTCATGC 60.080 57.895 0.00 0.00 43.29 4.06
651 652 0.963962 AAGGCACAACCAGCTTCATG 59.036 50.000 0.00 0.00 43.14 3.07
652 653 1.708341 AAAGGCACAACCAGCTTCAT 58.292 45.000 0.00 0.00 43.14 2.57
653 654 1.484038 AAAAGGCACAACCAGCTTCA 58.516 45.000 0.00 0.00 43.14 3.02
654 655 2.602257 AAAAAGGCACAACCAGCTTC 57.398 45.000 0.00 0.00 43.14 3.86
677 678 4.403137 CCCATGCGTTGCACCGTG 62.403 66.667 5.30 0.00 43.04 4.94
680 681 2.784889 AATTGCCCATGCGTTGCACC 62.785 55.000 0.00 0.00 43.04 5.01
681 682 0.950071 AAATTGCCCATGCGTTGCAC 60.950 50.000 0.00 0.00 43.04 4.57
682 683 0.250209 AAAATTGCCCATGCGTTGCA 60.250 45.000 0.00 0.00 44.86 4.08
683 684 0.873721 AAAAATTGCCCATGCGTTGC 59.126 45.000 0.00 0.00 41.78 4.17
684 685 2.415776 AGAAAAATTGCCCATGCGTTG 58.584 42.857 0.00 0.00 41.78 4.10
685 686 2.837532 AGAAAAATTGCCCATGCGTT 57.162 40.000 0.00 0.00 41.78 4.84
686 687 2.825532 ACTAGAAAAATTGCCCATGCGT 59.174 40.909 0.00 0.00 41.78 5.24
687 688 3.508744 ACTAGAAAAATTGCCCATGCG 57.491 42.857 0.00 0.00 41.78 4.73
2306 2934 7.013274 GGCAGGTACAGAATATCTTTAAATGCA 59.987 37.037 0.00 0.00 30.34 3.96
2322 2950 4.943705 ACAGTTTTATCATGGCAGGTACAG 59.056 41.667 0.00 0.00 0.00 2.74
2326 2954 4.012374 CTGACAGTTTTATCATGGCAGGT 58.988 43.478 0.00 0.00 44.74 4.00
2415 3168 3.181426 TGTCCTGTTACTAGACCAGTCCA 60.181 47.826 0.00 0.00 38.80 4.02
2773 3540 4.155449 GCTTGCATTTAAATCGTCGTCAA 58.845 39.130 0.00 0.00 0.00 3.18
3218 3992 5.880054 TTCTAACCTGTGCTTGCTATTTC 57.120 39.130 0.00 0.00 0.00 2.17
3300 4075 3.580084 TCCTTGCTGGAGGCTTGT 58.420 55.556 0.00 0.00 40.56 3.16
3568 4489 6.929049 CAGAGTATGGTTAGTGACAAACTTCA 59.071 38.462 0.00 0.00 40.56 3.02
3582 4503 6.127054 TGCTCATAGTTTAGCAGAGTATGGTT 60.127 38.462 0.00 0.00 43.56 3.67
3583 4504 5.363868 TGCTCATAGTTTAGCAGAGTATGGT 59.636 40.000 0.00 0.00 43.56 3.55
3633 4559 4.439253 AGGGCCACTTTTATAGGATCAC 57.561 45.455 6.18 0.00 0.00 3.06
3993 4931 7.753132 CGCAAACAAATAACAAGCTCCTTTATA 59.247 33.333 0.00 0.00 0.00 0.98
4142 5084 8.843262 GTGTAGTTTTGTTAGTTAATTCCCTGT 58.157 33.333 0.00 0.00 0.00 4.00
4143 5085 9.063615 AGTGTAGTTTTGTTAGTTAATTCCCTG 57.936 33.333 0.00 0.00 0.00 4.45
4144 5086 9.636789 AAGTGTAGTTTTGTTAGTTAATTCCCT 57.363 29.630 0.00 0.00 0.00 4.20
4516 6229 0.899717 GTGATGGCAGCAGGGGAAAA 60.900 55.000 5.29 0.00 0.00 2.29
4517 6230 1.304381 GTGATGGCAGCAGGGGAAA 60.304 57.895 5.29 0.00 0.00 3.13
4570 6283 5.163713 GCCAGTTCAAGCCTTTTATACTCTG 60.164 44.000 0.00 0.00 0.00 3.35
4709 6803 2.168521 GCTTAAAAGGCCAATCCCCTTC 59.831 50.000 5.01 0.00 41.70 3.46
4715 6809 4.374399 CATCCATGCTTAAAAGGCCAATC 58.626 43.478 5.01 0.00 0.00 2.67
4752 6846 1.001641 GCCACAGCAGGAGACCAAT 60.002 57.895 0.00 0.00 39.53 3.16
4772 6866 3.558411 GACATCTGTCGGCGCAGC 61.558 66.667 21.12 1.97 44.54 5.25
5344 7444 6.021074 GCATATAACGATCTGAGCAATAGTCG 60.021 42.308 0.00 0.00 35.42 4.18
5407 7507 6.368779 TTTCTAAGCACCTACCATTGTACT 57.631 37.500 0.00 0.00 0.00 2.73
5549 7651 5.012239 ACAATGCAAAATGCTTAGAGGAGA 58.988 37.500 3.78 0.00 45.31 3.71
5555 7657 5.062558 GCCTTGTACAATGCAAAATGCTTAG 59.937 40.000 25.28 3.19 45.31 2.18
5707 7823 1.892819 ATGGAGCTGGGACTGACACG 61.893 60.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.