Multiple sequence alignment - TraesCS2D01G298400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G298400 chr2D 100.000 2498 0 0 1 2498 380689440 380686943 0.000000e+00 4614
1 TraesCS2D01G298400 chr2D 91.281 1858 146 12 3 1855 379859238 379861084 0.000000e+00 2519
2 TraesCS2D01G298400 chr2D 72.289 913 227 23 526 1428 615382927 615383823 6.850000e-66 261
3 TraesCS2D01G298400 chr2D 87.302 189 23 1 2265 2453 555232210 555232023 5.410000e-52 215
4 TraesCS2D01G298400 chr2A 93.918 1940 78 18 3 1927 516095568 516093654 0.000000e+00 2892
5 TraesCS2D01G298400 chr2A 92.862 1527 100 6 3 1526 514860711 514862231 0.000000e+00 2207
6 TraesCS2D01G298400 chr2A 76.108 925 188 25 531 1437 9937815 9936906 1.050000e-123 453
7 TraesCS2D01G298400 chr2A 74.426 1001 235 19 453 1445 515310225 515311212 6.430000e-111 411
8 TraesCS2D01G298400 chr2A 74.074 945 218 22 516 1445 2818558 2817626 1.830000e-96 363
9 TraesCS2D01G298400 chr2A 95.531 179 6 2 2082 2259 516091254 516091077 4.070000e-73 285
10 TraesCS2D01G298400 chr2B 92.667 1541 102 8 3 1540 451125996 451127528 0.000000e+00 2209
11 TraesCS2D01G298400 chr2B 94.400 1250 63 3 3 1248 451924256 451923010 0.000000e+00 1914
12 TraesCS2D01G298400 chr2B 90.101 495 38 7 1368 1852 451905353 451904860 1.260000e-177 632
13 TraesCS2D01G298400 chr2B 86.318 402 18 6 1863 2251 451899729 451899352 1.080000e-108 403
14 TraesCS2D01G298400 chr2B 91.489 141 12 0 1238 1378 451915887 451915747 7.050000e-46 195
15 TraesCS2D01G298400 chr5B 91.579 190 16 0 2264 2453 527516279 527516090 1.910000e-66 263
16 TraesCS2D01G298400 chr1B 90.476 189 16 2 2265 2453 516947359 516947173 5.340000e-62 248
17 TraesCS2D01G298400 chr1B 85.714 161 21 2 2265 2424 205432047 205431888 4.270000e-38 169
18 TraesCS2D01G298400 chr6A 89.055 201 9 3 2266 2466 578607759 578607572 1.150000e-58 237
19 TraesCS2D01G298400 chr4D 89.362 188 20 0 2266 2453 19065667 19065480 1.150000e-58 237
20 TraesCS2D01G298400 chr6B 87.895 190 23 0 2264 2453 317560905 317560716 8.990000e-55 224
21 TraesCS2D01G298400 chr7B 85.882 170 24 0 2284 2453 152780391 152780560 5.490000e-42 182
22 TraesCS2D01G298400 chr5A 85.119 168 24 1 2264 2430 626091265 626091432 1.190000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G298400 chr2D 380686943 380689440 2497 True 4614.0 4614 100.0000 1 2498 1 chr2D.!!$R1 2497
1 TraesCS2D01G298400 chr2D 379859238 379861084 1846 False 2519.0 2519 91.2810 3 1855 1 chr2D.!!$F1 1852
2 TraesCS2D01G298400 chr2D 615382927 615383823 896 False 261.0 261 72.2890 526 1428 1 chr2D.!!$F2 902
3 TraesCS2D01G298400 chr2A 514860711 514862231 1520 False 2207.0 2207 92.8620 3 1526 1 chr2A.!!$F1 1523
4 TraesCS2D01G298400 chr2A 516091077 516095568 4491 True 1588.5 2892 94.7245 3 2259 2 chr2A.!!$R3 2256
5 TraesCS2D01G298400 chr2A 9936906 9937815 909 True 453.0 453 76.1080 531 1437 1 chr2A.!!$R2 906
6 TraesCS2D01G298400 chr2A 515310225 515311212 987 False 411.0 411 74.4260 453 1445 1 chr2A.!!$F2 992
7 TraesCS2D01G298400 chr2A 2817626 2818558 932 True 363.0 363 74.0740 516 1445 1 chr2A.!!$R1 929
8 TraesCS2D01G298400 chr2B 451125996 451127528 1532 False 2209.0 2209 92.6670 3 1540 1 chr2B.!!$F1 1537
9 TraesCS2D01G298400 chr2B 451923010 451924256 1246 True 1914.0 1914 94.4000 3 1248 1 chr2B.!!$R4 1245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 782 0.88337 GCGAGGGTGAACGAAGGTTT 60.883 55.0 0.0 0.0 36.24 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 1964 0.525668 CGAATCCTGAGGAACGACCG 60.526 60.0 20.91 10.2 44.74 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 4.853924 ACTCCTTTAAATTGTGGCAGTG 57.146 40.909 0.00 0.00 0.00 3.66
174 176 3.875727 CTCAGAATGCTGACAACATAGGG 59.124 47.826 0.00 0.00 45.88 3.53
309 314 2.224378 ACAACAGCATGCTGACACTACT 60.224 45.455 45.50 24.29 46.30 2.57
391 396 1.079543 CCTGGCAGAAGAGTGACCG 60.080 63.158 17.94 0.00 0.00 4.79
595 600 1.304962 TCGGAGAAGCTAGGTGCCA 60.305 57.895 0.00 0.00 44.23 4.92
623 628 1.955778 TGGTTCTGTGTTCAAGGCATG 59.044 47.619 0.00 0.00 0.00 4.06
777 782 0.883370 GCGAGGGTGAACGAAGGTTT 60.883 55.000 0.00 0.00 36.24 3.27
845 850 8.181573 TCTATTTCAGAACAACAACACAGTTTC 58.818 33.333 0.00 0.00 0.00 2.78
851 862 7.041030 TCAGAACAACAACACAGTTTCAAACTA 60.041 33.333 1.43 0.00 40.46 2.24
1274 1288 4.666512 AGCTTGGTGGATGACAAACTATT 58.333 39.130 0.00 0.00 0.00 1.73
1288 1302 7.171653 TGACAAACTATTGGGTGATGTGAATA 58.828 34.615 0.00 0.00 41.01 1.75
1296 1310 3.785325 TGGGTGATGTGAATATGGAGGAA 59.215 43.478 0.00 0.00 0.00 3.36
1351 1365 7.201758 GGTGCATTCAAGATGATGAGTTTGATA 60.202 37.037 0.00 0.00 30.45 2.15
1471 1485 2.040606 ACCCGCCATCCACCTACT 59.959 61.111 0.00 0.00 0.00 2.57
1472 1486 2.064581 ACCCGCCATCCACCTACTC 61.065 63.158 0.00 0.00 0.00 2.59
1473 1487 2.808206 CCCGCCATCCACCTACTCC 61.808 68.421 0.00 0.00 0.00 3.85
1474 1488 1.762460 CCGCCATCCACCTACTCCT 60.762 63.158 0.00 0.00 0.00 3.69
1475 1489 0.469331 CCGCCATCCACCTACTCCTA 60.469 60.000 0.00 0.00 0.00 2.94
1476 1490 0.674534 CGCCATCCACCTACTCCTAC 59.325 60.000 0.00 0.00 0.00 3.18
1481 1495 3.398292 CCATCCACCTACTCCTACCTCTA 59.602 52.174 0.00 0.00 0.00 2.43
1529 1543 2.549754 GCATGGCGTACATAAGAAGCAT 59.450 45.455 0.00 0.00 37.84 3.79
1533 1547 4.116961 TGGCGTACATAAGAAGCATACAC 58.883 43.478 0.00 0.00 0.00 2.90
1534 1548 4.116961 GGCGTACATAAGAAGCATACACA 58.883 43.478 0.00 0.00 0.00 3.72
1570 1588 4.390129 AGTAAGACAGTCTGAGAGGGAA 57.610 45.455 6.91 0.00 0.00 3.97
1574 1592 2.630580 AGACAGTCTGAGAGGGAACAAC 59.369 50.000 6.91 0.00 0.00 3.32
1600 1618 6.525629 AGAATGATACCCAATAGCTGTGTAC 58.474 40.000 0.00 0.00 0.00 2.90
1620 1639 7.869429 TGTGTACTTTAAGCTTTACTCTGTACC 59.131 37.037 3.20 5.67 0.00 3.34
1646 1665 6.437477 AGGTGTGTAAATCATCAGTCTAGTCA 59.563 38.462 0.00 0.00 0.00 3.41
1681 1703 7.113437 TCCAGGTATGAAATAAAATCCGTCAA 58.887 34.615 0.00 0.00 0.00 3.18
1690 1712 7.865385 TGAAATAAAATCCGTCAAAAGTTCAGG 59.135 33.333 0.00 0.00 0.00 3.86
1792 1815 3.047796 GACGTTGTTCGCTTCTTCACTA 58.952 45.455 0.00 0.00 44.19 2.74
1796 1819 4.375105 CGTTGTTCGCTTCTTCACTAGAAC 60.375 45.833 0.00 0.00 37.96 3.01
1826 1849 3.057386 TGCATCGTTTCATGATTTGCTGT 60.057 39.130 0.00 0.00 0.00 4.40
1864 1887 3.239449 TGACAGTTAGTGGTCACTGGAT 58.761 45.455 13.32 0.00 44.12 3.41
1927 1955 9.548631 TTGGATGGAACCATACCTTAAATTTAA 57.451 29.630 12.83 10.16 39.82 1.52
1928 1956 9.722317 TGGATGGAACCATACCTTAAATTTAAT 57.278 29.630 10.97 0.62 36.46 1.40
1935 1963 9.952030 AACCATACCTTAAATTTAATTTGTGGG 57.048 29.630 23.93 17.67 33.34 4.61
1936 1964 8.044309 ACCATACCTTAAATTTAATTTGTGGGC 58.956 33.333 23.93 0.00 33.34 5.36
1937 1965 7.223777 CCATACCTTAAATTTAATTTGTGGGCG 59.776 37.037 18.07 11.51 33.34 6.13
1938 1966 5.483811 ACCTTAAATTTAATTTGTGGGCGG 58.516 37.500 19.45 8.01 33.34 6.13
1941 1969 2.931512 ATTTAATTTGTGGGCGGTCG 57.068 45.000 0.00 0.00 0.00 4.79
1942 1970 1.606903 TTTAATTTGTGGGCGGTCGT 58.393 45.000 0.00 0.00 0.00 4.34
1943 1971 1.606903 TTAATTTGTGGGCGGTCGTT 58.393 45.000 0.00 0.00 0.00 3.85
1944 1972 1.158434 TAATTTGTGGGCGGTCGTTC 58.842 50.000 0.00 0.00 0.00 3.95
1945 1973 1.520600 AATTTGTGGGCGGTCGTTCC 61.521 55.000 0.00 0.00 0.00 3.62
1949 1977 3.691342 TGGGCGGTCGTTCCTCAG 61.691 66.667 6.49 0.00 0.00 3.35
1950 1978 4.452733 GGGCGGTCGTTCCTCAGG 62.453 72.222 0.00 0.00 0.00 3.86
1951 1979 3.379445 GGCGGTCGTTCCTCAGGA 61.379 66.667 0.00 0.00 0.00 3.86
1952 1980 2.722201 GGCGGTCGTTCCTCAGGAT 61.722 63.158 0.00 0.00 0.00 3.24
1953 1981 1.218316 GCGGTCGTTCCTCAGGATT 59.782 57.895 0.00 0.00 0.00 3.01
1955 1983 0.525668 CGGTCGTTCCTCAGGATTCG 60.526 60.000 11.28 11.28 33.37 3.34
1958 1986 1.067776 GTCGTTCCTCAGGATTCGTGT 60.068 52.381 15.45 0.00 33.64 4.49
1959 1987 1.067846 TCGTTCCTCAGGATTCGTGTG 60.068 52.381 15.45 4.19 33.64 3.82
1961 1989 0.976641 TTCCTCAGGATTCGTGTGCT 59.023 50.000 0.00 0.00 0.00 4.40
1962 1990 0.976641 TCCTCAGGATTCGTGTGCTT 59.023 50.000 6.28 0.00 0.00 3.91
1963 1991 1.066858 TCCTCAGGATTCGTGTGCTTC 60.067 52.381 6.28 0.00 0.00 3.86
1965 1993 2.625737 CTCAGGATTCGTGTGCTTCAT 58.374 47.619 6.28 0.00 0.00 2.57
1966 1994 3.430790 CCTCAGGATTCGTGTGCTTCATA 60.431 47.826 6.28 0.00 0.00 2.15
1967 1995 4.375272 CTCAGGATTCGTGTGCTTCATAT 58.625 43.478 6.28 0.00 0.00 1.78
1970 1998 4.813161 CAGGATTCGTGTGCTTCATATTCT 59.187 41.667 0.00 0.00 0.00 2.40
1972 2000 4.811024 GGATTCGTGTGCTTCATATTCTGA 59.189 41.667 0.00 0.00 0.00 3.27
1974 2002 5.723492 TTCGTGTGCTTCATATTCTGATG 57.277 39.130 0.00 0.00 32.72 3.07
1976 2004 3.873361 CGTGTGCTTCATATTCTGATGGT 59.127 43.478 0.00 0.00 32.72 3.55
1977 2005 4.025396 CGTGTGCTTCATATTCTGATGGTC 60.025 45.833 0.00 0.00 32.72 4.02
1978 2006 4.877823 GTGTGCTTCATATTCTGATGGTCA 59.122 41.667 0.00 0.00 32.72 4.02
1979 2007 5.530171 GTGTGCTTCATATTCTGATGGTCAT 59.470 40.000 0.00 0.00 32.72 3.06
1980 2008 6.039047 GTGTGCTTCATATTCTGATGGTCATT 59.961 38.462 0.00 0.00 32.72 2.57
1982 2010 7.123098 TGTGCTTCATATTCTGATGGTCATTTT 59.877 33.333 0.00 0.00 32.72 1.82
1983 2011 7.434307 GTGCTTCATATTCTGATGGTCATTTTG 59.566 37.037 0.00 0.00 32.72 2.44
1985 2013 7.861372 GCTTCATATTCTGATGGTCATTTTGAG 59.139 37.037 0.00 0.00 32.72 3.02
1988 2016 9.246670 TCATATTCTGATGGTCATTTTGAGTTT 57.753 29.630 0.00 0.00 0.00 2.66
1993 2021 8.099364 TCTGATGGTCATTTTGAGTTTAGAAC 57.901 34.615 0.00 0.00 0.00 3.01
1994 2022 6.898041 TGATGGTCATTTTGAGTTTAGAACG 58.102 36.000 0.00 0.00 36.23 3.95
1996 2024 6.539649 TGGTCATTTTGAGTTTAGAACGAG 57.460 37.500 0.00 0.00 36.23 4.18
1997 2025 6.053005 TGGTCATTTTGAGTTTAGAACGAGT 58.947 36.000 0.00 0.00 36.23 4.18
2000 2028 6.851330 GTCATTTTGAGTTTAGAACGAGTTGG 59.149 38.462 0.00 0.00 36.23 3.77
2029 2434 8.736751 TTTTTGTGTTGTAGACTTTTCTGTTC 57.263 30.769 0.00 0.00 32.75 3.18
2030 2435 7.681939 TTTGTGTTGTAGACTTTTCTGTTCT 57.318 32.000 0.00 0.00 32.75 3.01
2031 2436 6.662414 TGTGTTGTAGACTTTTCTGTTCTG 57.338 37.500 0.00 0.00 32.75 3.02
2034 2439 7.148474 TGTGTTGTAGACTTTTCTGTTCTGTTC 60.148 37.037 0.00 0.00 32.75 3.18
2035 2440 6.315393 TGTTGTAGACTTTTCTGTTCTGTTCC 59.685 38.462 0.00 0.00 32.75 3.62
2037 2442 6.591935 TGTAGACTTTTCTGTTCTGTTCCAT 58.408 36.000 0.00 0.00 32.75 3.41
2038 2443 6.483307 TGTAGACTTTTCTGTTCTGTTCCATG 59.517 38.462 0.00 0.00 32.75 3.66
2040 2445 5.529060 AGACTTTTCTGTTCTGTTCCATGAC 59.471 40.000 0.00 0.00 0.00 3.06
2041 2446 4.580580 ACTTTTCTGTTCTGTTCCATGACC 59.419 41.667 0.00 0.00 0.00 4.02
2043 2448 4.371624 TTCTGTTCTGTTCCATGACCAT 57.628 40.909 0.00 0.00 0.00 3.55
2044 2449 4.371624 TCTGTTCTGTTCCATGACCATT 57.628 40.909 0.00 0.00 0.00 3.16
2046 2451 5.245531 TCTGTTCTGTTCCATGACCATTAC 58.754 41.667 0.00 0.00 0.00 1.89
2047 2452 4.331968 TGTTCTGTTCCATGACCATTACC 58.668 43.478 0.00 0.00 0.00 2.85
2048 2453 3.644966 TCTGTTCCATGACCATTACCC 57.355 47.619 0.00 0.00 0.00 3.69
2051 2456 3.426615 TGTTCCATGACCATTACCCAAC 58.573 45.455 0.00 0.00 0.00 3.77
2052 2457 3.181428 TGTTCCATGACCATTACCCAACA 60.181 43.478 0.00 0.00 0.00 3.33
2053 2458 3.080300 TCCATGACCATTACCCAACAC 57.920 47.619 0.00 0.00 0.00 3.32
2055 2460 2.754552 CCATGACCATTACCCAACACAG 59.245 50.000 0.00 0.00 0.00 3.66
2057 2462 3.866703 TGACCATTACCCAACACAGAA 57.133 42.857 0.00 0.00 0.00 3.02
2058 2463 4.171878 TGACCATTACCCAACACAGAAA 57.828 40.909 0.00 0.00 0.00 2.52
2059 2464 4.141287 TGACCATTACCCAACACAGAAAG 58.859 43.478 0.00 0.00 0.00 2.62
2060 2465 4.142038 GACCATTACCCAACACAGAAAGT 58.858 43.478 0.00 0.00 0.00 2.66
2061 2466 5.163184 TGACCATTACCCAACACAGAAAGTA 60.163 40.000 0.00 0.00 0.00 2.24
2062 2467 5.067954 ACCATTACCCAACACAGAAAGTAC 58.932 41.667 0.00 0.00 0.00 2.73
2064 2469 2.249844 ACCCAACACAGAAAGTACCG 57.750 50.000 0.00 0.00 0.00 4.02
2065 2470 1.764134 ACCCAACACAGAAAGTACCGA 59.236 47.619 0.00 0.00 0.00 4.69
2066 2471 2.224209 ACCCAACACAGAAAGTACCGAG 60.224 50.000 0.00 0.00 0.00 4.63
2067 2472 2.413837 CCAACACAGAAAGTACCGAGG 58.586 52.381 0.00 0.00 0.00 4.63
2068 2473 1.798813 CAACACAGAAAGTACCGAGGC 59.201 52.381 0.00 0.00 0.00 4.70
2079 2612 6.822170 AGAAAGTACCGAGGCCTAATTTTTAG 59.178 38.462 4.42 0.00 0.00 1.85
2080 2613 4.449131 AGTACCGAGGCCTAATTTTTAGC 58.551 43.478 4.42 0.00 0.00 3.09
2273 4547 4.625607 GGGGACGAGGATTGAGATAAAT 57.374 45.455 0.00 0.00 0.00 1.40
2274 4548 5.740290 GGGGACGAGGATTGAGATAAATA 57.260 43.478 0.00 0.00 0.00 1.40
2275 4549 5.480205 GGGGACGAGGATTGAGATAAATAC 58.520 45.833 0.00 0.00 0.00 1.89
2276 4550 5.011738 GGGGACGAGGATTGAGATAAATACA 59.988 44.000 0.00 0.00 0.00 2.29
2277 4551 5.927115 GGGACGAGGATTGAGATAAATACAC 59.073 44.000 0.00 0.00 0.00 2.90
2278 4552 6.239345 GGGACGAGGATTGAGATAAATACACT 60.239 42.308 0.00 0.00 0.00 3.55
2279 4553 7.210873 GGACGAGGATTGAGATAAATACACTT 58.789 38.462 0.00 0.00 0.00 3.16
2280 4554 7.169982 GGACGAGGATTGAGATAAATACACTTG 59.830 40.741 0.00 0.00 0.00 3.16
2281 4555 7.556844 ACGAGGATTGAGATAAATACACTTGT 58.443 34.615 0.00 0.00 0.00 3.16
2282 4556 7.492669 ACGAGGATTGAGATAAATACACTTGTG 59.507 37.037 0.00 0.00 0.00 3.33
2283 4557 7.042456 CGAGGATTGAGATAAATACACTTGTGG 60.042 40.741 5.72 0.00 0.00 4.17
2284 4558 7.633789 AGGATTGAGATAAATACACTTGTGGT 58.366 34.615 5.72 0.00 0.00 4.16
2285 4559 7.770897 AGGATTGAGATAAATACACTTGTGGTC 59.229 37.037 5.72 0.00 0.00 4.02
2286 4560 7.552687 GGATTGAGATAAATACACTTGTGGTCA 59.447 37.037 5.72 0.00 0.00 4.02
2287 4561 7.667043 TTGAGATAAATACACTTGTGGTCAC 57.333 36.000 5.72 0.00 0.00 3.67
2288 4562 7.004555 TGAGATAAATACACTTGTGGTCACT 57.995 36.000 5.72 0.00 0.00 3.41
2289 4563 6.873605 TGAGATAAATACACTTGTGGTCACTG 59.126 38.462 5.72 0.00 0.00 3.66
2290 4564 7.004555 AGATAAATACACTTGTGGTCACTGA 57.995 36.000 5.72 0.00 0.00 3.41
2291 4565 7.450074 AGATAAATACACTTGTGGTCACTGAA 58.550 34.615 5.72 0.00 0.00 3.02
2292 4566 5.751243 AAATACACTTGTGGTCACTGAAC 57.249 39.130 5.72 0.00 0.00 3.18
2293 4567 4.689612 ATACACTTGTGGTCACTGAACT 57.310 40.909 5.72 0.00 0.00 3.01
2294 4568 3.350219 ACACTTGTGGTCACTGAACTT 57.650 42.857 5.72 0.00 0.00 2.66
2295 4569 3.009723 ACACTTGTGGTCACTGAACTTG 58.990 45.455 5.72 0.00 0.00 3.16
2296 4570 3.270027 CACTTGTGGTCACTGAACTTGA 58.730 45.455 2.66 0.00 0.00 3.02
2297 4571 3.310774 CACTTGTGGTCACTGAACTTGAG 59.689 47.826 2.66 0.00 0.00 3.02
2298 4572 2.620251 TGTGGTCACTGAACTTGAGG 57.380 50.000 2.66 0.00 0.00 3.86
2299 4573 1.837439 TGTGGTCACTGAACTTGAGGT 59.163 47.619 2.66 0.00 0.00 3.85
2300 4574 2.158957 TGTGGTCACTGAACTTGAGGTC 60.159 50.000 2.66 0.00 0.00 3.85
2301 4575 2.115427 TGGTCACTGAACTTGAGGTCA 58.885 47.619 0.00 0.00 0.00 4.02
2302 4576 2.503765 TGGTCACTGAACTTGAGGTCAA 59.496 45.455 0.00 0.00 0.00 3.18
2303 4577 3.054728 TGGTCACTGAACTTGAGGTCAAA 60.055 43.478 0.00 0.00 35.15 2.69
2304 4578 3.561725 GGTCACTGAACTTGAGGTCAAAG 59.438 47.826 0.00 0.00 35.15 2.77
2305 4579 3.002759 GTCACTGAACTTGAGGTCAAAGC 59.997 47.826 0.00 0.00 35.15 3.51
2306 4580 2.945008 CACTGAACTTGAGGTCAAAGCA 59.055 45.455 0.00 0.00 35.15 3.91
2307 4581 2.945668 ACTGAACTTGAGGTCAAAGCAC 59.054 45.455 0.00 0.00 35.15 4.40
2308 4582 2.945008 CTGAACTTGAGGTCAAAGCACA 59.055 45.455 0.00 0.00 35.15 4.57
2309 4583 2.682856 TGAACTTGAGGTCAAAGCACAC 59.317 45.455 0.00 0.00 35.15 3.82
2310 4584 2.717639 ACTTGAGGTCAAAGCACACT 57.282 45.000 0.00 0.00 35.15 3.55
2311 4585 3.838244 ACTTGAGGTCAAAGCACACTA 57.162 42.857 0.00 0.00 35.15 2.74
2312 4586 3.467803 ACTTGAGGTCAAAGCACACTAC 58.532 45.455 0.00 0.00 35.15 2.73
2313 4587 3.118408 ACTTGAGGTCAAAGCACACTACA 60.118 43.478 0.00 0.00 35.15 2.74
2314 4588 3.111853 TGAGGTCAAAGCACACTACAG 57.888 47.619 0.00 0.00 0.00 2.74
2315 4589 2.434336 TGAGGTCAAAGCACACTACAGT 59.566 45.455 0.00 0.00 0.00 3.55
2316 4590 3.060602 GAGGTCAAAGCACACTACAGTC 58.939 50.000 0.00 0.00 0.00 3.51
2317 4591 2.434336 AGGTCAAAGCACACTACAGTCA 59.566 45.455 0.00 0.00 0.00 3.41
2318 4592 2.544267 GGTCAAAGCACACTACAGTCAC 59.456 50.000 0.00 0.00 0.00 3.67
2319 4593 3.458189 GTCAAAGCACACTACAGTCACT 58.542 45.455 0.00 0.00 0.00 3.41
2320 4594 3.246226 GTCAAAGCACACTACAGTCACTG 59.754 47.826 2.22 2.22 37.52 3.66
2321 4595 2.533266 AAGCACACTACAGTCACTGG 57.467 50.000 10.28 0.00 35.51 4.00
2322 4596 1.704641 AGCACACTACAGTCACTGGA 58.295 50.000 10.28 0.00 35.51 3.86
2323 4597 1.341531 AGCACACTACAGTCACTGGAC 59.658 52.381 10.28 0.00 44.66 4.02
2336 4610 4.745649 GTCACTGGACTTTAGAATACGCT 58.254 43.478 0.00 0.00 40.99 5.07
2337 4611 4.799428 GTCACTGGACTTTAGAATACGCTC 59.201 45.833 0.00 0.00 40.99 5.03
2338 4612 4.461431 TCACTGGACTTTAGAATACGCTCA 59.539 41.667 0.00 0.00 0.00 4.26
2339 4613 5.047590 TCACTGGACTTTAGAATACGCTCAA 60.048 40.000 0.00 0.00 0.00 3.02
2340 4614 5.812642 CACTGGACTTTAGAATACGCTCAAT 59.187 40.000 0.00 0.00 0.00 2.57
2341 4615 6.978659 CACTGGACTTTAGAATACGCTCAATA 59.021 38.462 0.00 0.00 0.00 1.90
2342 4616 6.979238 ACTGGACTTTAGAATACGCTCAATAC 59.021 38.462 0.00 0.00 0.00 1.89
2343 4617 5.975344 TGGACTTTAGAATACGCTCAATACG 59.025 40.000 0.00 0.00 0.00 3.06
2344 4618 5.401674 GGACTTTAGAATACGCTCAATACGG 59.598 44.000 0.00 0.00 34.00 4.02
2345 4619 5.899299 ACTTTAGAATACGCTCAATACGGT 58.101 37.500 0.00 0.00 34.00 4.83
2346 4620 5.975939 ACTTTAGAATACGCTCAATACGGTC 59.024 40.000 0.00 0.00 34.00 4.79
2347 4621 5.503662 TTAGAATACGCTCAATACGGTCA 57.496 39.130 0.00 0.00 34.00 4.02
2348 4622 4.585955 AGAATACGCTCAATACGGTCAT 57.414 40.909 0.00 0.00 34.00 3.06
2349 4623 4.945246 AGAATACGCTCAATACGGTCATT 58.055 39.130 0.00 0.00 34.00 2.57
2350 4624 6.080648 AGAATACGCTCAATACGGTCATTA 57.919 37.500 0.00 0.00 34.00 1.90
2351 4625 6.509656 AGAATACGCTCAATACGGTCATTAA 58.490 36.000 0.00 0.00 34.00 1.40
2352 4626 6.982141 AGAATACGCTCAATACGGTCATTAAA 59.018 34.615 0.00 0.00 34.00 1.52
2353 4627 7.656137 AGAATACGCTCAATACGGTCATTAAAT 59.344 33.333 0.00 0.00 34.00 1.40
2354 4628 8.821147 AATACGCTCAATACGGTCATTAAATA 57.179 30.769 0.00 0.00 34.00 1.40
2355 4629 6.520792 ACGCTCAATACGGTCATTAAATAC 57.479 37.500 0.00 0.00 34.00 1.89
2356 4630 5.174398 ACGCTCAATACGGTCATTAAATACG 59.826 40.000 0.00 0.00 34.00 3.06
2357 4631 5.400188 CGCTCAATACGGTCATTAAATACGA 59.600 40.000 0.00 0.00 0.00 3.43
2358 4632 6.398621 CGCTCAATACGGTCATTAAATACGAG 60.399 42.308 0.00 0.00 0.00 4.18
2359 4633 6.420008 GCTCAATACGGTCATTAAATACGAGT 59.580 38.462 0.00 0.00 0.00 4.18
2360 4634 7.567048 GCTCAATACGGTCATTAAATACGAGTG 60.567 40.741 0.00 0.00 0.00 3.51
2361 4635 6.698329 TCAATACGGTCATTAAATACGAGTGG 59.302 38.462 0.00 0.00 0.00 4.00
2362 4636 3.192466 ACGGTCATTAAATACGAGTGGC 58.808 45.455 0.00 0.00 0.00 5.01
2364 4638 2.542595 GGTCATTAAATACGAGTGGCGG 59.457 50.000 0.00 0.00 46.49 6.13
2365 4639 3.192466 GTCATTAAATACGAGTGGCGGT 58.808 45.455 0.00 0.00 46.49 5.68
2366 4640 3.000925 GTCATTAAATACGAGTGGCGGTG 59.999 47.826 0.00 0.00 46.49 4.94
2367 4641 3.119065 TCATTAAATACGAGTGGCGGTGA 60.119 43.478 0.00 0.00 46.49 4.02
2368 4642 3.530265 TTAAATACGAGTGGCGGTGAT 57.470 42.857 0.00 0.00 46.49 3.06
2369 4643 2.396590 AAATACGAGTGGCGGTGATT 57.603 45.000 0.00 0.00 46.49 2.57
2370 4644 3.530265 AAATACGAGTGGCGGTGATTA 57.470 42.857 0.00 0.00 46.49 1.75
2371 4645 3.746045 AATACGAGTGGCGGTGATTAT 57.254 42.857 0.00 0.00 46.49 1.28
2372 4646 4.859304 AATACGAGTGGCGGTGATTATA 57.141 40.909 0.00 0.00 46.49 0.98
2373 4647 2.503920 ACGAGTGGCGGTGATTATAC 57.496 50.000 0.00 0.00 46.49 1.47
2374 4648 1.268896 ACGAGTGGCGGTGATTATACG 60.269 52.381 0.00 0.00 46.49 3.06
2375 4649 1.779569 GAGTGGCGGTGATTATACGG 58.220 55.000 0.00 0.00 0.00 4.02
2376 4650 1.068127 GAGTGGCGGTGATTATACGGT 59.932 52.381 0.00 0.00 0.00 4.83
2377 4651 1.068127 AGTGGCGGTGATTATACGGTC 59.932 52.381 0.00 0.00 0.00 4.79
2378 4652 1.112950 TGGCGGTGATTATACGGTCA 58.887 50.000 0.00 0.00 33.86 4.02
2379 4653 1.202440 TGGCGGTGATTATACGGTCAC 60.202 52.381 0.00 0.00 43.02 3.67
2380 4654 1.068127 GGCGGTGATTATACGGTCACT 59.932 52.381 10.30 0.00 43.23 3.41
2382 4656 2.739292 CGGTGATTATACGGTCACTGG 58.261 52.381 10.83 3.12 44.28 4.00
2383 4657 2.480845 GGTGATTATACGGTCACTGGC 58.519 52.381 10.30 0.00 43.23 4.85
2384 4658 2.102588 GGTGATTATACGGTCACTGGCT 59.897 50.000 10.30 0.00 43.23 4.75
2385 4659 3.381949 GTGATTATACGGTCACTGGCTC 58.618 50.000 0.00 0.00 41.10 4.70
2386 4660 3.028130 TGATTATACGGTCACTGGCTCA 58.972 45.455 0.00 0.00 0.00 4.26
2387 4661 3.641436 TGATTATACGGTCACTGGCTCAT 59.359 43.478 0.00 0.00 0.00 2.90
2388 4662 4.100963 TGATTATACGGTCACTGGCTCATT 59.899 41.667 0.00 0.00 0.00 2.57
2389 4663 2.315925 ATACGGTCACTGGCTCATTG 57.684 50.000 0.00 0.00 0.00 2.82
2390 4664 0.973632 TACGGTCACTGGCTCATTGT 59.026 50.000 0.00 0.00 0.00 2.71
2391 4665 0.973632 ACGGTCACTGGCTCATTGTA 59.026 50.000 0.00 0.00 0.00 2.41
2392 4666 1.555075 ACGGTCACTGGCTCATTGTAT 59.445 47.619 0.00 0.00 0.00 2.29
2393 4667 2.764010 ACGGTCACTGGCTCATTGTATA 59.236 45.455 0.00 0.00 0.00 1.47
2394 4668 3.181475 ACGGTCACTGGCTCATTGTATAG 60.181 47.826 0.00 0.00 0.00 1.31
2395 4669 3.134458 GGTCACTGGCTCATTGTATAGC 58.866 50.000 0.00 0.00 38.03 2.97
2396 4670 3.432186 GGTCACTGGCTCATTGTATAGCA 60.432 47.826 0.00 0.00 40.61 3.49
2397 4671 4.384056 GTCACTGGCTCATTGTATAGCAT 58.616 43.478 0.00 0.00 40.61 3.79
2398 4672 4.818546 GTCACTGGCTCATTGTATAGCATT 59.181 41.667 0.00 0.00 40.61 3.56
2399 4673 4.818005 TCACTGGCTCATTGTATAGCATTG 59.182 41.667 0.00 0.00 40.61 2.82
2400 4674 4.577693 CACTGGCTCATTGTATAGCATTGT 59.422 41.667 0.00 0.00 40.61 2.71
2401 4675 5.759763 CACTGGCTCATTGTATAGCATTGTA 59.240 40.000 0.00 0.00 40.61 2.41
2402 4676 6.429078 CACTGGCTCATTGTATAGCATTGTAT 59.571 38.462 0.00 0.00 40.61 2.29
2403 4677 7.000472 ACTGGCTCATTGTATAGCATTGTATT 59.000 34.615 0.00 0.00 40.61 1.89
2404 4678 7.503566 ACTGGCTCATTGTATAGCATTGTATTT 59.496 33.333 0.00 0.00 40.61 1.40
2405 4679 8.236585 TGGCTCATTGTATAGCATTGTATTTT 57.763 30.769 0.00 0.00 40.61 1.82
2406 4680 8.136800 TGGCTCATTGTATAGCATTGTATTTTG 58.863 33.333 0.00 0.00 40.61 2.44
2407 4681 8.137437 GGCTCATTGTATAGCATTGTATTTTGT 58.863 33.333 0.00 0.00 40.61 2.83
2408 4682 9.173939 GCTCATTGTATAGCATTGTATTTTGTC 57.826 33.333 0.00 0.00 38.63 3.18
2411 4685 9.454585 CATTGTATAGCATTGTATTTTGTCTGG 57.545 33.333 0.00 0.00 0.00 3.86
2412 4686 8.574251 TTGTATAGCATTGTATTTTGTCTGGT 57.426 30.769 0.00 0.00 0.00 4.00
2413 4687 8.574251 TGTATAGCATTGTATTTTGTCTGGTT 57.426 30.769 0.00 0.00 0.00 3.67
2414 4688 8.458052 TGTATAGCATTGTATTTTGTCTGGTTG 58.542 33.333 0.00 0.00 0.00 3.77
2415 4689 7.701539 ATAGCATTGTATTTTGTCTGGTTGA 57.298 32.000 0.00 0.00 0.00 3.18
2416 4690 5.772521 AGCATTGTATTTTGTCTGGTTGAC 58.227 37.500 0.00 0.00 45.54 3.18
2417 4691 4.923281 GCATTGTATTTTGTCTGGTTGACC 59.077 41.667 0.00 0.00 44.75 4.02
2418 4692 5.508825 GCATTGTATTTTGTCTGGTTGACCA 60.509 40.000 2.40 2.40 44.75 4.02
2436 4710 5.479306 TGACCAGTCAAATAGTCTACTTGC 58.521 41.667 0.00 0.00 36.53 4.01
2437 4711 4.833390 ACCAGTCAAATAGTCTACTTGCC 58.167 43.478 0.00 0.00 0.00 4.52
2438 4712 4.286032 ACCAGTCAAATAGTCTACTTGCCA 59.714 41.667 0.00 0.00 0.00 4.92
2439 4713 4.631813 CCAGTCAAATAGTCTACTTGCCAC 59.368 45.833 0.00 0.00 0.00 5.01
2440 4714 5.482908 CAGTCAAATAGTCTACTTGCCACT 58.517 41.667 0.00 0.00 0.00 4.00
2441 4715 5.934625 CAGTCAAATAGTCTACTTGCCACTT 59.065 40.000 0.00 0.00 0.00 3.16
2442 4716 7.097192 CAGTCAAATAGTCTACTTGCCACTTA 58.903 38.462 0.00 0.00 0.00 2.24
2443 4717 7.276658 CAGTCAAATAGTCTACTTGCCACTTAG 59.723 40.741 0.00 0.00 0.00 2.18
2444 4718 6.535508 GTCAAATAGTCTACTTGCCACTTAGG 59.464 42.308 0.00 0.00 41.84 2.69
2445 4719 6.439375 TCAAATAGTCTACTTGCCACTTAGGA 59.561 38.462 0.00 0.00 41.22 2.94
2446 4720 5.855740 ATAGTCTACTTGCCACTTAGGAC 57.144 43.478 0.00 0.00 41.22 3.85
2447 4721 3.507411 AGTCTACTTGCCACTTAGGACA 58.493 45.455 0.00 0.00 41.22 4.02
2448 4722 3.511934 AGTCTACTTGCCACTTAGGACAG 59.488 47.826 0.00 0.00 41.22 3.51
2449 4723 2.233922 TCTACTTGCCACTTAGGACAGC 59.766 50.000 0.00 0.00 41.22 4.40
2450 4724 0.764890 ACTTGCCACTTAGGACAGCA 59.235 50.000 0.00 0.00 41.22 4.41
2451 4725 1.160137 CTTGCCACTTAGGACAGCAC 58.840 55.000 0.00 0.00 41.22 4.40
2452 4726 0.764890 TTGCCACTTAGGACAGCACT 59.235 50.000 0.00 0.00 41.22 4.40
2453 4727 0.764890 TGCCACTTAGGACAGCACTT 59.235 50.000 0.00 0.00 41.22 3.16
2454 4728 1.270839 TGCCACTTAGGACAGCACTTC 60.271 52.381 0.00 0.00 41.22 3.01
2455 4729 1.946283 GCCACTTAGGACAGCACTTCC 60.946 57.143 0.00 0.00 41.22 3.46
2456 4730 1.339151 CCACTTAGGACAGCACTTCCC 60.339 57.143 0.00 0.00 41.22 3.97
2457 4731 1.625818 CACTTAGGACAGCACTTCCCT 59.374 52.381 0.00 0.00 33.01 4.20
2458 4732 1.903183 ACTTAGGACAGCACTTCCCTC 59.097 52.381 0.00 0.00 33.01 4.30
2459 4733 1.902508 CTTAGGACAGCACTTCCCTCA 59.097 52.381 0.00 0.00 33.01 3.86
2460 4734 2.024176 TAGGACAGCACTTCCCTCAA 57.976 50.000 0.00 0.00 33.01 3.02
2461 4735 1.140312 AGGACAGCACTTCCCTCAAA 58.860 50.000 0.00 0.00 33.01 2.69
2462 4736 1.494721 AGGACAGCACTTCCCTCAAAA 59.505 47.619 0.00 0.00 33.01 2.44
2463 4737 2.091885 AGGACAGCACTTCCCTCAAAAA 60.092 45.455 0.00 0.00 33.01 1.94
2484 4758 1.788229 AAAAACCTTGGGACCAGTGG 58.212 50.000 7.91 7.91 0.00 4.00
2485 4759 0.759060 AAAACCTTGGGACCAGTGGC 60.759 55.000 9.78 1.63 0.00 5.01
2486 4760 2.976494 AAACCTTGGGACCAGTGGCG 62.976 60.000 9.78 0.00 0.00 5.69
2487 4761 3.636231 CCTTGGGACCAGTGGCGA 61.636 66.667 9.78 0.00 0.00 5.54
2488 4762 2.429930 CTTGGGACCAGTGGCGAA 59.570 61.111 9.78 0.00 0.00 4.70
2489 4763 1.672356 CTTGGGACCAGTGGCGAAG 60.672 63.158 9.78 3.08 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.914426 TCTTATGGAGAAGCCCTTCAC 57.086 47.619 10.37 4.13 41.84 3.18
94 96 2.497675 TCATTCCTGCAGTACTCCTGTC 59.502 50.000 13.81 0.00 43.55 3.51
174 176 0.103937 CTCTAGCACTGGTAGCAGCC 59.896 60.000 21.58 12.77 34.13 4.85
309 314 2.585330 ACTGCACCATCATTTGTGTCA 58.415 42.857 0.00 0.00 34.94 3.58
391 396 1.132453 GGTAACTGCCAAAATCCGAGC 59.868 52.381 0.00 0.00 0.00 5.03
595 600 0.751643 AACACAGAACCAAAGCCGCT 60.752 50.000 0.00 0.00 0.00 5.52
845 850 7.770366 ATTTTAAACCTGGTACCCTAGTTTG 57.230 36.000 23.85 4.20 33.75 2.93
851 862 5.491439 AGAGCTATTTTAAACCTGGTACCCT 59.509 40.000 10.07 0.00 0.00 4.34
876 887 1.997874 CAGCCCCCTAGCAACTCCT 60.998 63.158 0.00 0.00 34.23 3.69
1234 1248 1.457346 CTTGCCACATCTCCCTCAAC 58.543 55.000 0.00 0.00 0.00 3.18
1274 1288 3.392730 TCCTCCATATTCACATCACCCA 58.607 45.455 0.00 0.00 0.00 4.51
1288 1302 1.078143 GCCGTTCAGCTTCCTCCAT 60.078 57.895 0.00 0.00 0.00 3.41
1351 1365 3.976701 CTTCGCCCATTGTCGGCCT 62.977 63.158 0.00 0.00 43.98 5.19
1556 1574 3.070159 TCTTGTTGTTCCCTCTCAGACTG 59.930 47.826 0.00 0.00 0.00 3.51
1570 1588 6.319658 CAGCTATTGGGTATCATTCTTGTTGT 59.680 38.462 0.00 0.00 0.00 3.32
1574 1592 5.824624 ACACAGCTATTGGGTATCATTCTTG 59.175 40.000 0.00 0.00 43.15 3.02
1620 1639 6.634805 ACTAGACTGATGATTTACACACCTG 58.365 40.000 0.00 0.00 0.00 4.00
1675 1697 0.882927 TCGCCCTGAACTTTTGACGG 60.883 55.000 0.00 0.00 0.00 4.79
1690 1712 1.078143 AATCCTGCAAGAGGTCGCC 60.078 57.895 0.00 0.00 43.37 5.54
1745 1768 2.859538 CGAAGCAAAGCAAAAAGAGCAA 59.140 40.909 0.00 0.00 0.00 3.91
1792 1815 4.694982 TGAAACGATGCACACATATGTTCT 59.305 37.500 5.37 0.00 36.72 3.01
1796 1819 5.159399 TCATGAAACGATGCACACATATG 57.841 39.130 0.00 0.00 36.35 1.78
1826 1849 6.313519 ACTGTCAGATTAAATAGGGCAAGA 57.686 37.500 6.91 0.00 0.00 3.02
1864 1887 2.907634 TGCACGTTAAAACTGGTCAGA 58.092 42.857 4.84 0.00 0.00 3.27
1927 1955 1.969589 GGAACGACCGCCCACAAAT 60.970 57.895 0.00 0.00 0.00 2.32
1928 1956 2.592287 GGAACGACCGCCCACAAA 60.592 61.111 0.00 0.00 0.00 2.83
1929 1957 3.524648 GAGGAACGACCGCCCACAA 62.525 63.158 0.00 0.00 44.74 3.33
1930 1958 3.998672 GAGGAACGACCGCCCACA 61.999 66.667 0.00 0.00 44.74 4.17
1931 1959 3.934391 CTGAGGAACGACCGCCCAC 62.934 68.421 0.00 0.00 44.74 4.61
1932 1960 3.691342 CTGAGGAACGACCGCCCA 61.691 66.667 0.00 0.00 44.74 5.36
1933 1961 4.452733 CCTGAGGAACGACCGCCC 62.453 72.222 0.00 0.00 44.74 6.13
1934 1962 2.240162 AATCCTGAGGAACGACCGCC 62.240 60.000 4.76 0.00 44.74 6.13
1935 1963 0.806492 GAATCCTGAGGAACGACCGC 60.806 60.000 4.76 0.00 44.74 5.68
1936 1964 0.525668 CGAATCCTGAGGAACGACCG 60.526 60.000 20.91 10.20 44.74 4.79
1937 1965 0.531200 ACGAATCCTGAGGAACGACC 59.469 55.000 28.23 8.19 38.29 4.79
1938 1966 1.067776 ACACGAATCCTGAGGAACGAC 60.068 52.381 28.23 11.38 38.29 4.34
1941 1969 1.079503 GCACACGAATCCTGAGGAAC 58.920 55.000 4.76 1.84 34.34 3.62
1942 1970 0.976641 AGCACACGAATCCTGAGGAA 59.023 50.000 4.76 0.00 34.34 3.36
1943 1971 0.976641 AAGCACACGAATCCTGAGGA 59.023 50.000 2.43 2.43 35.55 3.71
1944 1972 1.338105 TGAAGCACACGAATCCTGAGG 60.338 52.381 0.00 0.00 0.00 3.86
1945 1973 2.084610 TGAAGCACACGAATCCTGAG 57.915 50.000 0.00 0.00 0.00 3.35
1949 1977 4.811024 TCAGAATATGAAGCACACGAATCC 59.189 41.667 0.00 0.00 34.02 3.01
1950 1978 5.973651 TCAGAATATGAAGCACACGAATC 57.026 39.130 0.00 0.00 34.02 2.52
1951 1979 5.237996 CCATCAGAATATGAAGCACACGAAT 59.762 40.000 0.00 0.00 42.53 3.34
1952 1980 4.571984 CCATCAGAATATGAAGCACACGAA 59.428 41.667 0.00 0.00 42.53 3.85
1953 1981 4.122046 CCATCAGAATATGAAGCACACGA 58.878 43.478 0.00 0.00 42.53 4.35
1955 1983 4.877823 TGACCATCAGAATATGAAGCACAC 59.122 41.667 0.00 0.00 42.53 3.82
1958 1986 7.339976 TCAAAATGACCATCAGAATATGAAGCA 59.660 33.333 0.00 0.00 42.53 3.91
1959 1987 7.709947 TCAAAATGACCATCAGAATATGAAGC 58.290 34.615 0.00 0.00 42.53 3.86
1961 1989 8.812513 ACTCAAAATGACCATCAGAATATGAA 57.187 30.769 0.00 0.00 42.53 2.57
1962 1990 8.812513 AACTCAAAATGACCATCAGAATATGA 57.187 30.769 0.00 0.00 43.70 2.15
1965 1993 9.958180 TCTAAACTCAAAATGACCATCAGAATA 57.042 29.630 0.00 0.00 0.00 1.75
1966 1994 8.868522 TCTAAACTCAAAATGACCATCAGAAT 57.131 30.769 0.00 0.00 0.00 2.40
1967 1995 8.567948 GTTCTAAACTCAAAATGACCATCAGAA 58.432 33.333 0.00 0.00 0.00 3.02
1970 1998 6.708502 TCGTTCTAAACTCAAAATGACCATCA 59.291 34.615 0.00 0.00 0.00 3.07
1972 2000 6.710744 ACTCGTTCTAAACTCAAAATGACCAT 59.289 34.615 0.00 0.00 0.00 3.55
1974 2002 6.541111 ACTCGTTCTAAACTCAAAATGACC 57.459 37.500 0.00 0.00 0.00 4.02
1976 2004 6.764085 TCCAACTCGTTCTAAACTCAAAATGA 59.236 34.615 0.00 0.00 0.00 2.57
1977 2005 6.954944 TCCAACTCGTTCTAAACTCAAAATG 58.045 36.000 0.00 0.00 0.00 2.32
1978 2006 7.562454 TTCCAACTCGTTCTAAACTCAAAAT 57.438 32.000 0.00 0.00 0.00 1.82
1979 2007 6.988622 TTCCAACTCGTTCTAAACTCAAAA 57.011 33.333 0.00 0.00 0.00 2.44
1980 2008 7.562454 AATTCCAACTCGTTCTAAACTCAAA 57.438 32.000 0.00 0.00 0.00 2.69
1982 2010 7.562454 AAAATTCCAACTCGTTCTAAACTCA 57.438 32.000 0.00 0.00 0.00 3.41
2011 2416 6.315393 TGGAACAGAACAGAAAAGTCTACAAC 59.685 38.462 0.00 0.00 30.85 3.32
2013 2418 5.984725 TGGAACAGAACAGAAAAGTCTACA 58.015 37.500 0.00 0.00 30.85 2.74
2031 2436 3.192633 GTGTTGGGTAATGGTCATGGAAC 59.807 47.826 0.00 0.00 0.00 3.62
2034 2439 2.754552 CTGTGTTGGGTAATGGTCATGG 59.245 50.000 0.00 0.00 0.00 3.66
2035 2440 3.684908 TCTGTGTTGGGTAATGGTCATG 58.315 45.455 0.00 0.00 0.00 3.07
2037 2442 3.866703 TTCTGTGTTGGGTAATGGTCA 57.133 42.857 0.00 0.00 0.00 4.02
2038 2443 4.142038 ACTTTCTGTGTTGGGTAATGGTC 58.858 43.478 0.00 0.00 0.00 4.02
2040 2445 4.457949 GGTACTTTCTGTGTTGGGTAATGG 59.542 45.833 0.00 0.00 0.00 3.16
2041 2446 4.153475 CGGTACTTTCTGTGTTGGGTAATG 59.847 45.833 0.00 0.00 0.00 1.90
2043 2448 3.387374 TCGGTACTTTCTGTGTTGGGTAA 59.613 43.478 0.00 0.00 0.00 2.85
2044 2449 2.964464 TCGGTACTTTCTGTGTTGGGTA 59.036 45.455 0.00 0.00 0.00 3.69
2046 2451 2.413837 CTCGGTACTTTCTGTGTTGGG 58.586 52.381 0.00 0.00 0.00 4.12
2047 2452 2.413837 CCTCGGTACTTTCTGTGTTGG 58.586 52.381 0.00 0.00 0.00 3.77
2048 2453 1.798813 GCCTCGGTACTTTCTGTGTTG 59.201 52.381 0.00 0.00 0.00 3.33
2051 2456 0.608640 AGGCCTCGGTACTTTCTGTG 59.391 55.000 0.00 0.00 0.00 3.66
2052 2457 2.226962 TAGGCCTCGGTACTTTCTGT 57.773 50.000 9.68 0.00 0.00 3.41
2053 2458 3.821421 ATTAGGCCTCGGTACTTTCTG 57.179 47.619 9.68 0.00 0.00 3.02
2055 2460 5.892160 AAAAATTAGGCCTCGGTACTTTC 57.108 39.130 9.68 0.00 0.00 2.62
2057 2462 4.880120 GCTAAAAATTAGGCCTCGGTACTT 59.120 41.667 9.68 0.00 0.00 2.24
2058 2463 4.080751 TGCTAAAAATTAGGCCTCGGTACT 60.081 41.667 9.68 0.00 0.00 2.73
2059 2464 4.193865 TGCTAAAAATTAGGCCTCGGTAC 58.806 43.478 9.68 0.00 0.00 3.34
2060 2465 4.490899 TGCTAAAAATTAGGCCTCGGTA 57.509 40.909 9.68 0.00 0.00 4.02
2061 2466 3.359695 TGCTAAAAATTAGGCCTCGGT 57.640 42.857 9.68 0.00 0.00 4.69
2062 2467 4.097892 ACAATGCTAAAAATTAGGCCTCGG 59.902 41.667 9.68 0.00 0.00 4.63
2064 2469 4.805719 GCACAATGCTAAAAATTAGGCCTC 59.194 41.667 9.68 0.00 40.96 4.70
2065 2470 4.758688 GCACAATGCTAAAAATTAGGCCT 58.241 39.130 11.78 11.78 40.96 5.19
2093 4366 9.677567 TGATTTCTTACTACAAAATGTTTCAGC 57.322 29.630 0.00 0.00 0.00 4.26
2167 4440 4.029809 CGCGGGGGAGGGAAAAGT 62.030 66.667 0.00 0.00 0.00 2.66
2191 4464 1.601419 GACCCCCGAGTCATCACGAA 61.601 60.000 0.00 0.00 36.73 3.85
2254 4528 6.750148 AGTGTATTTATCTCAATCCTCGTCC 58.250 40.000 0.00 0.00 0.00 4.79
2259 4533 7.633789 ACCACAAGTGTATTTATCTCAATCCT 58.366 34.615 0.00 0.00 0.00 3.24
2260 4534 7.552687 TGACCACAAGTGTATTTATCTCAATCC 59.447 37.037 0.00 0.00 0.00 3.01
2261 4535 8.391106 GTGACCACAAGTGTATTTATCTCAATC 58.609 37.037 0.00 0.00 0.00 2.67
2262 4536 8.103305 AGTGACCACAAGTGTATTTATCTCAAT 58.897 33.333 2.78 0.00 0.00 2.57
2263 4537 7.387673 CAGTGACCACAAGTGTATTTATCTCAA 59.612 37.037 2.78 0.00 0.00 3.02
2264 4538 6.873605 CAGTGACCACAAGTGTATTTATCTCA 59.126 38.462 2.78 0.00 0.00 3.27
2265 4539 7.097192 TCAGTGACCACAAGTGTATTTATCTC 58.903 38.462 2.78 0.00 0.00 2.75
2266 4540 7.004555 TCAGTGACCACAAGTGTATTTATCT 57.995 36.000 2.78 0.00 0.00 1.98
2267 4541 7.387948 AGTTCAGTGACCACAAGTGTATTTATC 59.612 37.037 0.00 0.00 0.00 1.75
2268 4542 7.224297 AGTTCAGTGACCACAAGTGTATTTAT 58.776 34.615 0.00 0.00 0.00 1.40
2269 4543 6.588204 AGTTCAGTGACCACAAGTGTATTTA 58.412 36.000 0.00 0.00 0.00 1.40
2270 4544 5.437060 AGTTCAGTGACCACAAGTGTATTT 58.563 37.500 0.00 0.00 0.00 1.40
2271 4545 5.036117 AGTTCAGTGACCACAAGTGTATT 57.964 39.130 0.00 0.00 0.00 1.89
2272 4546 4.689612 AGTTCAGTGACCACAAGTGTAT 57.310 40.909 0.00 0.00 0.00 2.29
2273 4547 4.081365 TCAAGTTCAGTGACCACAAGTGTA 60.081 41.667 0.00 0.00 0.00 2.90
2274 4548 3.009723 CAAGTTCAGTGACCACAAGTGT 58.990 45.455 0.00 0.00 0.00 3.55
2275 4549 3.270027 TCAAGTTCAGTGACCACAAGTG 58.730 45.455 0.00 0.00 0.00 3.16
2276 4550 3.535561 CTCAAGTTCAGTGACCACAAGT 58.464 45.455 0.00 0.00 0.00 3.16
2277 4551 2.874701 CCTCAAGTTCAGTGACCACAAG 59.125 50.000 0.00 0.00 0.00 3.16
2278 4552 2.238646 ACCTCAAGTTCAGTGACCACAA 59.761 45.455 0.00 0.00 0.00 3.33
2279 4553 1.837439 ACCTCAAGTTCAGTGACCACA 59.163 47.619 0.00 0.00 0.00 4.17
2280 4554 2.158957 TGACCTCAAGTTCAGTGACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2281 4555 2.115427 TGACCTCAAGTTCAGTGACCA 58.885 47.619 0.00 0.00 0.00 4.02
2282 4556 2.910688 TGACCTCAAGTTCAGTGACC 57.089 50.000 0.00 0.00 0.00 4.02
2283 4557 3.002759 GCTTTGACCTCAAGTTCAGTGAC 59.997 47.826 0.00 0.00 37.15 3.67
2284 4558 3.206150 GCTTTGACCTCAAGTTCAGTGA 58.794 45.455 0.00 0.00 37.15 3.41
2285 4559 2.945008 TGCTTTGACCTCAAGTTCAGTG 59.055 45.455 0.00 0.00 37.15 3.66
2286 4560 2.945668 GTGCTTTGACCTCAAGTTCAGT 59.054 45.455 0.00 0.00 37.15 3.41
2287 4561 2.945008 TGTGCTTTGACCTCAAGTTCAG 59.055 45.455 0.00 0.00 37.15 3.02
2288 4562 2.682856 GTGTGCTTTGACCTCAAGTTCA 59.317 45.455 0.00 0.00 37.15 3.18
2289 4563 2.945668 AGTGTGCTTTGACCTCAAGTTC 59.054 45.455 0.00 0.00 37.15 3.01
2290 4564 3.004752 AGTGTGCTTTGACCTCAAGTT 57.995 42.857 0.00 0.00 37.15 2.66
2291 4565 2.717639 AGTGTGCTTTGACCTCAAGT 57.282 45.000 0.00 0.00 37.15 3.16
2292 4566 3.466836 TGTAGTGTGCTTTGACCTCAAG 58.533 45.455 0.00 0.00 37.15 3.02
2293 4567 3.118408 ACTGTAGTGTGCTTTGACCTCAA 60.118 43.478 0.00 0.00 0.00 3.02
2294 4568 2.434336 ACTGTAGTGTGCTTTGACCTCA 59.566 45.455 0.00 0.00 0.00 3.86
2295 4569 3.060602 GACTGTAGTGTGCTTTGACCTC 58.939 50.000 0.00 0.00 0.00 3.85
2296 4570 2.434336 TGACTGTAGTGTGCTTTGACCT 59.566 45.455 0.00 0.00 0.00 3.85
2297 4571 2.544267 GTGACTGTAGTGTGCTTTGACC 59.456 50.000 0.00 0.00 0.00 4.02
2298 4572 3.246226 CAGTGACTGTAGTGTGCTTTGAC 59.754 47.826 4.01 0.00 0.00 3.18
2299 4573 3.457234 CAGTGACTGTAGTGTGCTTTGA 58.543 45.455 4.01 0.00 0.00 2.69
2300 4574 2.545526 CCAGTGACTGTAGTGTGCTTTG 59.454 50.000 12.15 0.00 0.00 2.77
2301 4575 2.434336 TCCAGTGACTGTAGTGTGCTTT 59.566 45.455 12.15 0.00 0.00 3.51
2302 4576 2.039418 TCCAGTGACTGTAGTGTGCTT 58.961 47.619 12.15 0.00 0.00 3.91
2303 4577 1.341531 GTCCAGTGACTGTAGTGTGCT 59.658 52.381 12.15 0.00 38.53 4.40
2304 4578 1.784525 GTCCAGTGACTGTAGTGTGC 58.215 55.000 12.15 0.00 38.53 4.57
2314 4588 4.745649 AGCGTATTCTAAAGTCCAGTGAC 58.254 43.478 0.00 0.00 42.09 3.67
2315 4589 4.461431 TGAGCGTATTCTAAAGTCCAGTGA 59.539 41.667 0.00 0.00 0.00 3.41
2316 4590 4.744570 TGAGCGTATTCTAAAGTCCAGTG 58.255 43.478 0.00 0.00 0.00 3.66
2317 4591 5.401531 TTGAGCGTATTCTAAAGTCCAGT 57.598 39.130 0.00 0.00 0.00 4.00
2318 4592 6.142480 CGTATTGAGCGTATTCTAAAGTCCAG 59.858 42.308 0.00 0.00 0.00 3.86
2319 4593 5.975344 CGTATTGAGCGTATTCTAAAGTCCA 59.025 40.000 0.00 0.00 0.00 4.02
2320 4594 5.401674 CCGTATTGAGCGTATTCTAAAGTCC 59.598 44.000 0.00 0.00 0.00 3.85
2321 4595 5.975939 ACCGTATTGAGCGTATTCTAAAGTC 59.024 40.000 0.00 0.00 0.00 3.01
2322 4596 5.899299 ACCGTATTGAGCGTATTCTAAAGT 58.101 37.500 0.00 0.00 0.00 2.66
2323 4597 5.975344 TGACCGTATTGAGCGTATTCTAAAG 59.025 40.000 0.00 0.00 0.00 1.85
2324 4598 5.893687 TGACCGTATTGAGCGTATTCTAAA 58.106 37.500 0.00 0.00 0.00 1.85
2325 4599 5.503662 TGACCGTATTGAGCGTATTCTAA 57.496 39.130 0.00 0.00 0.00 2.10
2326 4600 5.700722 ATGACCGTATTGAGCGTATTCTA 57.299 39.130 0.00 0.00 0.00 2.10
2327 4601 4.585955 ATGACCGTATTGAGCGTATTCT 57.414 40.909 0.00 0.00 0.00 2.40
2328 4602 6.758593 TTAATGACCGTATTGAGCGTATTC 57.241 37.500 0.00 0.00 0.00 1.75
2329 4603 7.724305 ATTTAATGACCGTATTGAGCGTATT 57.276 32.000 0.00 0.00 0.00 1.89
2330 4604 7.061441 CGTATTTAATGACCGTATTGAGCGTAT 59.939 37.037 0.00 0.00 0.00 3.06
2331 4605 6.360414 CGTATTTAATGACCGTATTGAGCGTA 59.640 38.462 0.00 0.00 0.00 4.42
2332 4606 5.174398 CGTATTTAATGACCGTATTGAGCGT 59.826 40.000 0.00 0.00 0.00 5.07
2333 4607 5.400188 TCGTATTTAATGACCGTATTGAGCG 59.600 40.000 0.00 0.00 0.00 5.03
2334 4608 6.420008 ACTCGTATTTAATGACCGTATTGAGC 59.580 38.462 0.00 0.00 0.00 4.26
2335 4609 7.096189 CCACTCGTATTTAATGACCGTATTGAG 60.096 40.741 0.00 0.00 0.00 3.02
2336 4610 6.698329 CCACTCGTATTTAATGACCGTATTGA 59.302 38.462 0.00 0.00 0.00 2.57
2337 4611 6.563381 GCCACTCGTATTTAATGACCGTATTG 60.563 42.308 0.00 0.00 0.00 1.90
2338 4612 5.464389 GCCACTCGTATTTAATGACCGTATT 59.536 40.000 0.00 0.00 0.00 1.89
2339 4613 4.986659 GCCACTCGTATTTAATGACCGTAT 59.013 41.667 0.00 0.00 0.00 3.06
2340 4614 4.362279 GCCACTCGTATTTAATGACCGTA 58.638 43.478 0.00 0.00 0.00 4.02
2341 4615 3.192466 GCCACTCGTATTTAATGACCGT 58.808 45.455 0.00 0.00 0.00 4.83
2342 4616 2.217847 CGCCACTCGTATTTAATGACCG 59.782 50.000 0.00 0.00 0.00 4.79
2343 4617 2.542595 CCGCCACTCGTATTTAATGACC 59.457 50.000 0.00 0.00 36.19 4.02
2344 4618 3.000925 CACCGCCACTCGTATTTAATGAC 59.999 47.826 0.00 0.00 36.19 3.06
2345 4619 3.119065 TCACCGCCACTCGTATTTAATGA 60.119 43.478 0.00 0.00 36.19 2.57
2346 4620 3.191669 TCACCGCCACTCGTATTTAATG 58.808 45.455 0.00 0.00 36.19 1.90
2347 4621 3.530265 TCACCGCCACTCGTATTTAAT 57.470 42.857 0.00 0.00 36.19 1.40
2348 4622 3.530265 ATCACCGCCACTCGTATTTAA 57.470 42.857 0.00 0.00 36.19 1.52
2349 4623 3.530265 AATCACCGCCACTCGTATTTA 57.470 42.857 0.00 0.00 36.19 1.40
2350 4624 2.396590 AATCACCGCCACTCGTATTT 57.603 45.000 0.00 0.00 36.19 1.40
2351 4625 3.746045 ATAATCACCGCCACTCGTATT 57.254 42.857 0.00 0.00 36.19 1.89
2352 4626 3.365666 CGTATAATCACCGCCACTCGTAT 60.366 47.826 0.00 0.00 36.19 3.06
2353 4627 2.031769 CGTATAATCACCGCCACTCGTA 60.032 50.000 0.00 0.00 36.19 3.43
2354 4628 1.268896 CGTATAATCACCGCCACTCGT 60.269 52.381 0.00 0.00 36.19 4.18
2355 4629 1.405461 CGTATAATCACCGCCACTCG 58.595 55.000 0.00 0.00 38.08 4.18
2356 4630 1.068127 ACCGTATAATCACCGCCACTC 59.932 52.381 0.00 0.00 0.00 3.51
2357 4631 1.068127 GACCGTATAATCACCGCCACT 59.932 52.381 0.00 0.00 0.00 4.00
2358 4632 1.202440 TGACCGTATAATCACCGCCAC 60.202 52.381 0.00 0.00 0.00 5.01
2359 4633 1.112950 TGACCGTATAATCACCGCCA 58.887 50.000 0.00 0.00 0.00 5.69
2360 4634 1.068127 AGTGACCGTATAATCACCGCC 59.932 52.381 8.65 0.00 45.28 6.13
2361 4635 2.124903 CAGTGACCGTATAATCACCGC 58.875 52.381 8.65 0.00 45.28 5.68
2362 4636 2.739292 CCAGTGACCGTATAATCACCG 58.261 52.381 8.65 1.22 45.28 4.94
2363 4637 2.102588 AGCCAGTGACCGTATAATCACC 59.897 50.000 8.65 0.00 45.28 4.02
2364 4638 3.181479 TGAGCCAGTGACCGTATAATCAC 60.181 47.826 0.00 5.33 44.64 3.06
2365 4639 3.028130 TGAGCCAGTGACCGTATAATCA 58.972 45.455 0.00 0.00 0.00 2.57
2366 4640 3.728076 TGAGCCAGTGACCGTATAATC 57.272 47.619 0.00 0.00 0.00 1.75
2367 4641 4.141711 ACAATGAGCCAGTGACCGTATAAT 60.142 41.667 9.16 0.00 33.46 1.28
2368 4642 3.196901 ACAATGAGCCAGTGACCGTATAA 59.803 43.478 9.16 0.00 33.46 0.98
2369 4643 2.764010 ACAATGAGCCAGTGACCGTATA 59.236 45.455 9.16 0.00 33.46 1.47
2370 4644 1.555075 ACAATGAGCCAGTGACCGTAT 59.445 47.619 9.16 0.00 33.46 3.06
2371 4645 0.973632 ACAATGAGCCAGTGACCGTA 59.026 50.000 9.16 0.00 33.46 4.02
2372 4646 0.973632 TACAATGAGCCAGTGACCGT 59.026 50.000 9.16 0.00 33.46 4.83
2373 4647 2.315925 ATACAATGAGCCAGTGACCG 57.684 50.000 9.16 0.00 33.46 4.79
2374 4648 3.134458 GCTATACAATGAGCCAGTGACC 58.866 50.000 9.16 0.00 33.46 4.02
2375 4649 3.797039 TGCTATACAATGAGCCAGTGAC 58.203 45.455 9.16 0.00 37.94 3.67
2376 4650 4.694760 ATGCTATACAATGAGCCAGTGA 57.305 40.909 9.16 0.00 37.94 3.41
2377 4651 4.577693 ACAATGCTATACAATGAGCCAGTG 59.422 41.667 1.82 1.82 37.94 3.66
2378 4652 4.785301 ACAATGCTATACAATGAGCCAGT 58.215 39.130 0.00 0.00 37.94 4.00
2379 4653 7.444629 AATACAATGCTATACAATGAGCCAG 57.555 36.000 0.00 0.00 37.94 4.85
2380 4654 7.822161 AAATACAATGCTATACAATGAGCCA 57.178 32.000 0.00 0.00 37.94 4.75
2381 4655 8.137437 ACAAAATACAATGCTATACAATGAGCC 58.863 33.333 0.00 0.00 37.94 4.70
2382 4656 9.173939 GACAAAATACAATGCTATACAATGAGC 57.826 33.333 0.00 0.00 39.25 4.26
2385 4659 9.454585 CCAGACAAAATACAATGCTATACAATG 57.545 33.333 0.00 0.00 35.15 2.82
2386 4660 9.189156 ACCAGACAAAATACAATGCTATACAAT 57.811 29.630 0.00 0.00 0.00 2.71
2387 4661 8.574251 ACCAGACAAAATACAATGCTATACAA 57.426 30.769 0.00 0.00 0.00 2.41
2388 4662 8.458052 CAACCAGACAAAATACAATGCTATACA 58.542 33.333 0.00 0.00 0.00 2.29
2389 4663 8.673711 TCAACCAGACAAAATACAATGCTATAC 58.326 33.333 0.00 0.00 0.00 1.47
2390 4664 8.673711 GTCAACCAGACAAAATACAATGCTATA 58.326 33.333 0.00 0.00 46.77 1.31
2391 4665 7.538575 GTCAACCAGACAAAATACAATGCTAT 58.461 34.615 0.00 0.00 46.77 2.97
2392 4666 6.908825 GTCAACCAGACAAAATACAATGCTA 58.091 36.000 0.00 0.00 46.77 3.49
2393 4667 5.772521 GTCAACCAGACAAAATACAATGCT 58.227 37.500 0.00 0.00 46.77 3.79
2412 4686 5.932303 GCAAGTAGACTATTTGACTGGTCAA 59.068 40.000 18.90 11.53 46.72 3.18
2413 4687 5.479306 GCAAGTAGACTATTTGACTGGTCA 58.521 41.667 18.90 0.00 37.91 4.02
2414 4688 4.870991 GGCAAGTAGACTATTTGACTGGTC 59.129 45.833 18.90 3.02 31.38 4.02
2415 4689 4.286032 TGGCAAGTAGACTATTTGACTGGT 59.714 41.667 20.60 0.00 34.78 4.00
2416 4690 4.631813 GTGGCAAGTAGACTATTTGACTGG 59.368 45.833 20.60 0.00 34.78 4.00
2417 4691 5.482908 AGTGGCAAGTAGACTATTTGACTG 58.517 41.667 20.60 0.00 34.78 3.51
2418 4692 5.746990 AGTGGCAAGTAGACTATTTGACT 57.253 39.130 20.60 13.18 34.78 3.41
2419 4693 6.535508 CCTAAGTGGCAAGTAGACTATTTGAC 59.464 42.308 18.90 16.98 34.33 3.18
2420 4694 6.439375 TCCTAAGTGGCAAGTAGACTATTTGA 59.561 38.462 18.90 0.00 35.26 2.69
2421 4695 6.535508 GTCCTAAGTGGCAAGTAGACTATTTG 59.464 42.308 12.18 12.18 35.26 2.32
2422 4696 6.212791 TGTCCTAAGTGGCAAGTAGACTATTT 59.787 38.462 7.16 0.00 35.26 1.40
2423 4697 5.720041 TGTCCTAAGTGGCAAGTAGACTATT 59.280 40.000 7.16 0.00 35.26 1.73
2424 4698 5.269991 TGTCCTAAGTGGCAAGTAGACTAT 58.730 41.667 7.16 0.00 35.26 2.12
2425 4699 4.669700 TGTCCTAAGTGGCAAGTAGACTA 58.330 43.478 7.16 0.00 35.26 2.59
2426 4700 3.507411 TGTCCTAAGTGGCAAGTAGACT 58.493 45.455 7.16 0.00 35.26 3.24
2427 4701 3.851098 CTGTCCTAAGTGGCAAGTAGAC 58.149 50.000 7.16 3.77 35.26 2.59
2428 4702 2.233922 GCTGTCCTAAGTGGCAAGTAGA 59.766 50.000 7.16 0.00 35.26 2.59
2429 4703 2.028112 TGCTGTCCTAAGTGGCAAGTAG 60.028 50.000 0.00 0.00 35.26 2.57
2430 4704 1.974957 TGCTGTCCTAAGTGGCAAGTA 59.025 47.619 0.00 0.00 35.26 2.24
2431 4705 0.764890 TGCTGTCCTAAGTGGCAAGT 59.235 50.000 0.00 0.00 35.26 3.16
2432 4706 1.160137 GTGCTGTCCTAAGTGGCAAG 58.840 55.000 0.00 0.00 34.65 4.01
2433 4707 0.764890 AGTGCTGTCCTAAGTGGCAA 59.235 50.000 0.00 0.00 34.65 4.52
2434 4708 0.764890 AAGTGCTGTCCTAAGTGGCA 59.235 50.000 0.00 0.00 35.26 4.92
2435 4709 1.443802 GAAGTGCTGTCCTAAGTGGC 58.556 55.000 0.00 0.00 35.26 5.01
2436 4710 1.339151 GGGAAGTGCTGTCCTAAGTGG 60.339 57.143 1.71 0.00 35.33 4.00
2437 4711 1.625818 AGGGAAGTGCTGTCCTAAGTG 59.374 52.381 1.71 0.00 35.33 3.16
2438 4712 1.903183 GAGGGAAGTGCTGTCCTAAGT 59.097 52.381 1.71 0.00 35.33 2.24
2439 4713 1.902508 TGAGGGAAGTGCTGTCCTAAG 59.097 52.381 1.71 0.00 35.33 2.18
2440 4714 2.024176 TGAGGGAAGTGCTGTCCTAA 57.976 50.000 1.71 0.00 35.33 2.69
2441 4715 2.024176 TTGAGGGAAGTGCTGTCCTA 57.976 50.000 1.71 0.00 35.33 2.94
2442 4716 1.140312 TTTGAGGGAAGTGCTGTCCT 58.860 50.000 1.71 0.00 35.33 3.85
2443 4717 1.981256 TTTTGAGGGAAGTGCTGTCC 58.019 50.000 0.00 0.00 0.00 4.02
2465 4739 1.788229 CCACTGGTCCCAAGGTTTTT 58.212 50.000 0.00 0.00 0.00 1.94
2466 4740 0.759060 GCCACTGGTCCCAAGGTTTT 60.759 55.000 0.00 0.00 0.00 2.43
2467 4741 1.152546 GCCACTGGTCCCAAGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
2468 4742 2.520968 GCCACTGGTCCCAAGGTT 59.479 61.111 0.00 0.00 0.00 3.50
2469 4743 3.953775 CGCCACTGGTCCCAAGGT 61.954 66.667 0.00 0.00 0.00 3.50
2470 4744 3.190738 TTCGCCACTGGTCCCAAGG 62.191 63.158 0.00 1.13 0.00 3.61
2471 4745 1.672356 CTTCGCCACTGGTCCCAAG 60.672 63.158 0.00 0.00 0.00 3.61
2472 4746 2.429930 CTTCGCCACTGGTCCCAA 59.570 61.111 0.00 0.00 0.00 4.12
2473 4747 4.329545 GCTTCGCCACTGGTCCCA 62.330 66.667 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.