Multiple sequence alignment - TraesCS2D01G297500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G297500 chr2D 100.000 4663 0 0 1 4663 380077163 380081825 0.000000e+00 8612
1 TraesCS2D01G297500 chr2D 79.469 2372 414 49 1072 3399 380088828 380091170 0.000000e+00 1615
2 TraesCS2D01G297500 chr2D 79.494 1502 262 28 1937 3400 2775455 2776948 0.000000e+00 1026
3 TraesCS2D01G297500 chr2D 76.610 885 186 18 2497 3369 8347359 8346484 7.060000e-128 468
4 TraesCS2D01G297500 chr2D 90.645 310 11 8 3988 4279 380092152 380092461 3.380000e-106 396
5 TraesCS2D01G297500 chr2D 77.645 501 67 29 3477 3970 380091275 380091737 3.580000e-66 263
6 TraesCS2D01G297500 chr2D 82.911 158 15 9 443 593 564446659 564446507 1.050000e-26 132
7 TraesCS2D01G297500 chr2D 82.895 152 17 6 448 597 133769416 133769560 1.360000e-25 128
8 TraesCS2D01G297500 chr2B 94.006 4204 154 37 1 4131 451453076 451457254 0.000000e+00 6277
9 TraesCS2D01G297500 chr2B 82.698 1075 163 13 2345 3400 8321537 8320467 0.000000e+00 933
10 TraesCS2D01G297500 chr2B 76.923 884 185 17 2497 3369 4752725 4751850 7.020000e-133 484
11 TraesCS2D01G297500 chr2A 96.600 3147 59 9 582 3725 515302023 515305124 0.000000e+00 5175
12 TraesCS2D01G297500 chr2A 79.476 2368 421 42 1072 3399 515308892 515311234 0.000000e+00 1620
13 TraesCS2D01G297500 chr2A 80.697 1492 250 27 1937 3400 16347289 16345808 0.000000e+00 1125
14 TraesCS2D01G297500 chr2A 79.947 1496 260 27 1937 3400 2819090 2817603 0.000000e+00 1064
15 TraesCS2D01G297500 chr2A 95.166 331 13 2 113 443 515301343 515301670 1.920000e-143 520
16 TraesCS2D01G297500 chr2A 92.899 169 11 1 3963 4131 515312166 515312333 1.300000e-60 244
17 TraesCS2D01G297500 chr2A 95.918 147 6 0 4131 4277 515312371 515312517 6.030000e-59 239
18 TraesCS2D01G297500 chr2A 79.868 303 25 15 3664 3966 515311500 515311766 6.160000e-44 189
19 TraesCS2D01G297500 chr2A 82.639 144 19 4 454 593 747617511 747617370 6.340000e-24 122
20 TraesCS2D01G297500 chr6D 83.851 161 17 6 443 596 364493571 364493729 1.350000e-30 145
21 TraesCS2D01G297500 chr1B 84.459 148 20 2 448 594 388762323 388762468 4.860000e-30 143
22 TraesCS2D01G297500 chr3B 81.595 163 20 6 443 599 578775270 578775112 4.900000e-25 126
23 TraesCS2D01G297500 chr4D 87.500 104 12 1 443 545 37050602 37050705 8.200000e-23 119
24 TraesCS2D01G297500 chr5B 85.185 108 11 4 442 546 19743474 19743579 6.380000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G297500 chr2D 380077163 380081825 4662 False 8612.000000 8612 100.000000 1 4663 1 chr2D.!!$F3 4662
1 TraesCS2D01G297500 chr2D 2775455 2776948 1493 False 1026.000000 1026 79.494000 1937 3400 1 chr2D.!!$F1 1463
2 TraesCS2D01G297500 chr2D 380088828 380092461 3633 False 758.000000 1615 82.586333 1072 4279 3 chr2D.!!$F4 3207
3 TraesCS2D01G297500 chr2D 8346484 8347359 875 True 468.000000 468 76.610000 2497 3369 1 chr2D.!!$R1 872
4 TraesCS2D01G297500 chr2B 451453076 451457254 4178 False 6277.000000 6277 94.006000 1 4131 1 chr2B.!!$F1 4130
5 TraesCS2D01G297500 chr2B 8320467 8321537 1070 True 933.000000 933 82.698000 2345 3400 1 chr2B.!!$R2 1055
6 TraesCS2D01G297500 chr2B 4751850 4752725 875 True 484.000000 484 76.923000 2497 3369 1 chr2B.!!$R1 872
7 TraesCS2D01G297500 chr2A 515301343 515312517 11174 False 1331.166667 5175 89.987833 113 4277 6 chr2A.!!$F1 4164
8 TraesCS2D01G297500 chr2A 16345808 16347289 1481 True 1125.000000 1125 80.697000 1937 3400 1 chr2A.!!$R2 1463
9 TraesCS2D01G297500 chr2A 2817603 2819090 1487 True 1064.000000 1064 79.947000 1937 3400 1 chr2A.!!$R1 1463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 1027 0.099259 CAGACAACCGCCGACGTATA 59.901 55.0 0.0 0.0 37.70 1.47 F
806 1078 0.813184 TAAAGCCAGTCGTACTCGGG 59.187 55.0 0.0 0.0 37.69 5.14 F
1629 1925 0.871057 GGTTCAGTCTTGCAGCACTC 59.129 55.0 0.0 0.0 0.00 3.51 F
1926 2222 0.169009 GGCCTTTCACAATCTGCGAC 59.831 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1886 0.038159 AGGCAGAACCGTTCTTCTCG 60.038 55.000 11.24 1.8 46.52 4.04 R
1864 2160 0.536233 TGGTCGTTGGGATTGGTGTG 60.536 55.000 0.00 0.0 0.00 3.82 R
2809 9562 2.028130 CAGTCCTCTAGCAACTCCGAT 58.972 52.381 0.00 0.0 0.00 4.18 R
3725 10511 0.248621 GCGCCACTGGTATTTCATGC 60.249 55.000 0.00 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.050377 AGAAAAACACAGAGACAAGATCTTCA 58.950 34.615 4.57 0.00 38.00 3.02
31 32 6.857777 AAAACACAGAGACAAGATCTTCAG 57.142 37.500 4.57 0.00 38.00 3.02
32 33 4.533919 ACACAGAGACAAGATCTTCAGG 57.466 45.455 4.57 0.00 38.00 3.86
33 34 3.900601 ACACAGAGACAAGATCTTCAGGT 59.099 43.478 4.57 0.20 38.00 4.00
35 36 4.928615 CACAGAGACAAGATCTTCAGGTTC 59.071 45.833 4.57 0.00 38.00 3.62
82 85 2.125512 GATGGTCTTCGCCACGCT 60.126 61.111 0.00 0.00 41.94 5.07
85 88 0.530650 ATGGTCTTCGCCACGCTATG 60.531 55.000 0.00 0.00 41.94 2.23
214 218 4.981806 TCAAGGCCTTAATCCAAAATCG 57.018 40.909 20.00 0.67 0.00 3.34
361 371 4.074970 CCTTAATTTCACTGCAGTGGACT 58.925 43.478 39.04 26.90 45.65 3.85
418 428 3.753797 GACCCAGGCTTTAGTTTCAAGAG 59.246 47.826 0.00 0.00 0.00 2.85
419 429 3.394606 ACCCAGGCTTTAGTTTCAAGAGA 59.605 43.478 0.00 0.00 0.00 3.10
422 432 5.819901 CCCAGGCTTTAGTTTCAAGAGATAG 59.180 44.000 0.00 0.00 0.00 2.08
451 715 4.404073 CACTCCTTGATAAGTACTGCCTCT 59.596 45.833 0.00 0.00 0.00 3.69
457 721 6.926272 CCTTGATAAGTACTGCCTCTATTCAC 59.074 42.308 0.00 0.00 0.00 3.18
516 782 7.984050 ACTACATATGGACTGAAATGAGTGAAG 59.016 37.037 7.80 0.00 0.00 3.02
537 804 6.423905 TGAAGAACACACTAAAGCATGTCTAC 59.576 38.462 0.00 0.00 0.00 2.59
541 808 7.545965 AGAACACACTAAAGCATGTCTACATAC 59.454 37.037 0.00 0.00 34.26 2.39
544 811 7.492669 ACACACTAAAGCATGTCTACATACATC 59.507 37.037 0.00 0.00 38.01 3.06
546 813 7.147655 ACACTAAAGCATGTCTACATACATCCT 60.148 37.037 0.00 0.00 38.01 3.24
551 818 7.544804 AGCATGTCTACATACATCCTATTCA 57.455 36.000 0.00 0.00 38.01 2.57
554 821 9.056005 GCATGTCTACATACATCCTATTCAAAA 57.944 33.333 0.00 0.00 38.01 2.44
703 970 0.613853 CGTTCTCCACCCCAGGACTA 60.614 60.000 0.00 0.00 33.19 2.59
756 1023 2.355363 TTCAGACAACCGCCGACG 60.355 61.111 0.00 0.00 39.67 5.12
760 1027 0.099259 CAGACAACCGCCGACGTATA 59.901 55.000 0.00 0.00 37.70 1.47
761 1028 1.027357 AGACAACCGCCGACGTATAT 58.973 50.000 0.00 0.00 37.70 0.86
802 1074 3.306571 GGTCCTTTAAAGCCAGTCGTACT 60.307 47.826 9.86 0.00 0.00 2.73
803 1075 3.925299 GTCCTTTAAAGCCAGTCGTACTC 59.075 47.826 9.86 0.00 0.00 2.59
804 1076 2.921754 CCTTTAAAGCCAGTCGTACTCG 59.078 50.000 9.86 0.00 38.55 4.18
805 1077 2.642139 TTAAAGCCAGTCGTACTCGG 57.358 50.000 0.00 0.00 37.69 4.63
806 1078 0.813184 TAAAGCCAGTCGTACTCGGG 59.187 55.000 0.00 0.00 37.69 5.14
807 1079 0.896940 AAAGCCAGTCGTACTCGGGA 60.897 55.000 0.00 0.00 37.69 5.14
808 1080 1.313812 AAGCCAGTCGTACTCGGGAG 61.314 60.000 0.00 0.00 37.69 4.30
902 1174 2.507058 TGGCTTCCTTATCATGCTCAGT 59.493 45.455 0.00 0.00 0.00 3.41
916 1188 1.337823 GCTCAGTTTGCTCCCTTCGTA 60.338 52.381 0.00 0.00 0.00 3.43
917 1189 2.338500 CTCAGTTTGCTCCCTTCGTAC 58.662 52.381 0.00 0.00 0.00 3.67
918 1190 1.689813 TCAGTTTGCTCCCTTCGTACA 59.310 47.619 0.00 0.00 0.00 2.90
933 1205 4.049546 TCGTACACCATATAGTTGTGCC 57.950 45.455 0.00 0.00 33.30 5.01
934 1206 2.792674 CGTACACCATATAGTTGTGCCG 59.207 50.000 0.00 0.00 33.30 5.69
955 1242 2.751436 GCCGAGGCAGCATTTCCA 60.751 61.111 9.58 0.00 41.49 3.53
1068 1355 2.360350 CTGCGCAATCCCACCTGT 60.360 61.111 13.05 0.00 0.00 4.00
1149 1436 2.899838 AGCAACGGCAAGTTCGCA 60.900 55.556 15.21 0.00 42.02 5.10
1277 1573 2.567615 ACGGAGATAAGCCTGTCACTTT 59.432 45.455 0.00 0.00 0.00 2.66
1590 1886 5.356751 TGGGATGTATGTTTATGAGTTGCAC 59.643 40.000 0.00 0.00 0.00 4.57
1629 1925 0.871057 GGTTCAGTCTTGCAGCACTC 59.129 55.000 0.00 0.00 0.00 3.51
1758 2054 3.383825 ACGAACAAGAGGTGTACTTCACT 59.616 43.478 0.00 0.00 45.50 3.41
1872 2168 1.382629 GGTACCAGCCCACACCAAT 59.617 57.895 7.15 0.00 0.00 3.16
1926 2222 0.169009 GGCCTTTCACAATCTGCGAC 59.831 55.000 0.00 0.00 0.00 5.19
2763 9510 7.495055 GTTCTCTTGATGCCCATTTATTTCAT 58.505 34.615 0.00 0.00 0.00 2.57
2809 9562 5.065914 GGAGCATCAGGTATCAAATTGCTA 58.934 41.667 0.00 0.00 38.93 3.49
3377 10133 2.996631 ACTTGAAGCTATTGCAGGGAG 58.003 47.619 1.12 0.00 42.74 4.30
3400 10156 3.501828 TGCACACTCGAAATGTAAGCAAT 59.498 39.130 10.37 0.00 0.00 3.56
3422 10178 4.477302 AACGTACTTGCACAAACATACC 57.523 40.909 0.00 0.00 0.00 2.73
3721 10507 4.906618 TCCCTTCAGTGATTGTCTAAACC 58.093 43.478 0.00 0.00 0.00 3.27
3722 10508 4.349636 TCCCTTCAGTGATTGTCTAAACCA 59.650 41.667 0.00 0.00 0.00 3.67
3723 10509 5.014123 TCCCTTCAGTGATTGTCTAAACCAT 59.986 40.000 0.00 0.00 0.00 3.55
3724 10510 5.124457 CCCTTCAGTGATTGTCTAAACCATG 59.876 44.000 0.00 0.00 0.00 3.66
3725 10511 5.124457 CCTTCAGTGATTGTCTAAACCATGG 59.876 44.000 11.19 11.19 0.00 3.66
3829 10639 4.279922 TGTTGTACTCTCATCAAAGGTCGA 59.720 41.667 0.00 0.00 0.00 4.20
3832 10642 3.533606 ACTCTCATCAAAGGTCGATGG 57.466 47.619 0.00 0.00 40.58 3.51
3912 10722 1.877637 TGGTTGTCCACGTGATCTTG 58.122 50.000 19.30 0.00 39.03 3.02
4134 11462 2.224769 GGGACCAGATTTGTTGAGTCCA 60.225 50.000 9.05 0.00 44.51 4.02
4249 11577 1.594310 GTCCTCCTGCTCCTGTCAC 59.406 63.158 0.00 0.00 0.00 3.67
4279 11607 2.042944 GGGCCTTCAATCCCACCC 60.043 66.667 0.84 0.00 42.18 4.61
4280 11608 2.770130 GGCCTTCAATCCCACCCA 59.230 61.111 0.00 0.00 0.00 4.51
4281 11609 1.078347 GGCCTTCAATCCCACCCAA 59.922 57.895 0.00 0.00 0.00 4.12
4282 11610 1.257750 GGCCTTCAATCCCACCCAAC 61.258 60.000 0.00 0.00 0.00 3.77
4283 11611 1.595093 GCCTTCAATCCCACCCAACG 61.595 60.000 0.00 0.00 0.00 4.10
4284 11612 0.251165 CCTTCAATCCCACCCAACGT 60.251 55.000 0.00 0.00 0.00 3.99
4285 11613 1.003812 CCTTCAATCCCACCCAACGTA 59.996 52.381 0.00 0.00 0.00 3.57
4286 11614 2.356741 CCTTCAATCCCACCCAACGTAT 60.357 50.000 0.00 0.00 0.00 3.06
4287 11615 3.352648 CTTCAATCCCACCCAACGTATT 58.647 45.455 0.00 0.00 0.00 1.89
4288 11616 3.443145 TCAATCCCACCCAACGTATTT 57.557 42.857 0.00 0.00 0.00 1.40
4289 11617 3.349022 TCAATCCCACCCAACGTATTTC 58.651 45.455 0.00 0.00 0.00 2.17
4290 11618 2.032680 ATCCCACCCAACGTATTTCG 57.967 50.000 0.00 0.00 46.00 3.46
4291 11619 0.036199 TCCCACCCAACGTATTTCGG 60.036 55.000 0.00 0.00 44.69 4.30
4292 11620 0.036199 CCCACCCAACGTATTTCGGA 60.036 55.000 0.00 0.00 44.69 4.55
4293 11621 1.407712 CCCACCCAACGTATTTCGGAT 60.408 52.381 0.00 0.00 44.69 4.18
4294 11622 2.361789 CCACCCAACGTATTTCGGATT 58.638 47.619 0.00 0.00 44.69 3.01
4295 11623 2.750712 CCACCCAACGTATTTCGGATTT 59.249 45.455 0.00 0.00 44.69 2.17
4296 11624 3.191791 CCACCCAACGTATTTCGGATTTT 59.808 43.478 0.00 0.00 44.69 1.82
4297 11625 4.408694 CACCCAACGTATTTCGGATTTTC 58.591 43.478 0.00 0.00 44.69 2.29
4298 11626 3.125658 ACCCAACGTATTTCGGATTTTCG 59.874 43.478 0.00 0.00 44.69 3.46
4299 11627 3.486209 CCCAACGTATTTCGGATTTTCGG 60.486 47.826 0.00 0.00 44.69 4.30
4300 11628 3.486209 CCAACGTATTTCGGATTTTCGGG 60.486 47.826 0.00 0.00 44.69 5.14
4301 11629 2.282407 ACGTATTTCGGATTTTCGGGG 58.718 47.619 0.00 0.00 44.69 5.73
4302 11630 1.003223 CGTATTTCGGATTTTCGGGGC 60.003 52.381 0.00 0.00 35.71 5.80
4303 11631 2.018515 GTATTTCGGATTTTCGGGGCA 58.981 47.619 0.00 0.00 0.00 5.36
4304 11632 1.102978 ATTTCGGATTTTCGGGGCAG 58.897 50.000 0.00 0.00 0.00 4.85
4305 11633 0.963355 TTTCGGATTTTCGGGGCAGG 60.963 55.000 0.00 0.00 0.00 4.85
4306 11634 2.828549 CGGATTTTCGGGGCAGGG 60.829 66.667 0.00 0.00 0.00 4.45
4307 11635 2.359011 GGATTTTCGGGGCAGGGT 59.641 61.111 0.00 0.00 0.00 4.34
4308 11636 1.610873 GGATTTTCGGGGCAGGGTA 59.389 57.895 0.00 0.00 0.00 3.69
4309 11637 0.465642 GGATTTTCGGGGCAGGGTAG 60.466 60.000 0.00 0.00 0.00 3.18
4310 11638 0.255033 GATTTTCGGGGCAGGGTAGT 59.745 55.000 0.00 0.00 0.00 2.73
4311 11639 0.255033 ATTTTCGGGGCAGGGTAGTC 59.745 55.000 0.00 0.00 0.00 2.59
4312 11640 1.844544 TTTTCGGGGCAGGGTAGTCC 61.845 60.000 0.00 0.00 0.00 3.85
4323 11651 2.385803 AGGGTAGTCCTGATAACGTGG 58.614 52.381 0.00 0.00 46.07 4.94
4324 11652 2.105766 GGGTAGTCCTGATAACGTGGT 58.894 52.381 0.00 0.00 0.00 4.16
4325 11653 2.100418 GGGTAGTCCTGATAACGTGGTC 59.900 54.545 0.00 0.00 0.00 4.02
4326 11654 2.100418 GGTAGTCCTGATAACGTGGTCC 59.900 54.545 0.00 0.00 0.00 4.46
4327 11655 2.233305 AGTCCTGATAACGTGGTCCT 57.767 50.000 0.00 0.00 0.00 3.85
4328 11656 1.825474 AGTCCTGATAACGTGGTCCTG 59.175 52.381 0.00 0.00 0.00 3.86
4329 11657 1.134788 GTCCTGATAACGTGGTCCTGG 60.135 57.143 0.00 0.00 0.00 4.45
4330 11658 0.902531 CCTGATAACGTGGTCCTGGT 59.097 55.000 0.00 0.00 0.00 4.00
4331 11659 2.104967 CCTGATAACGTGGTCCTGGTA 58.895 52.381 0.00 0.00 0.00 3.25
4332 11660 2.498481 CCTGATAACGTGGTCCTGGTAA 59.502 50.000 0.00 0.00 0.00 2.85
4333 11661 3.518590 CTGATAACGTGGTCCTGGTAAC 58.481 50.000 0.00 0.00 0.00 2.50
4334 11662 2.234414 TGATAACGTGGTCCTGGTAACC 59.766 50.000 0.00 0.00 37.31 2.85
4335 11663 1.714541 TAACGTGGTCCTGGTAACCA 58.285 50.000 3.24 3.24 44.46 3.67
4346 11674 2.551644 GGTAACCACCGAGGCTTTG 58.448 57.895 0.00 0.00 43.14 2.77
4347 11675 0.958876 GGTAACCACCGAGGCTTTGG 60.959 60.000 0.00 0.00 43.14 3.28
4348 11676 0.958876 GTAACCACCGAGGCTTTGGG 60.959 60.000 7.10 7.07 43.14 4.12
4349 11677 2.132089 TAACCACCGAGGCTTTGGGG 62.132 60.000 7.10 1.42 43.14 4.96
4350 11678 3.966543 CCACCGAGGCTTTGGGGT 61.967 66.667 7.10 3.60 31.40 4.95
4351 11679 2.115266 CACCGAGGCTTTGGGGTT 59.885 61.111 7.10 0.00 31.40 4.11
4352 11680 1.530655 CACCGAGGCTTTGGGGTTT 60.531 57.895 7.10 0.00 31.40 3.27
4353 11681 1.228459 ACCGAGGCTTTGGGGTTTC 60.228 57.895 7.10 0.00 31.40 2.78
4354 11682 1.977009 CCGAGGCTTTGGGGTTTCC 60.977 63.158 0.00 0.00 0.00 3.13
4355 11683 2.332654 CGAGGCTTTGGGGTTTCCG 61.333 63.158 0.00 0.00 38.76 4.30
4356 11684 1.977009 GAGGCTTTGGGGTTTCCGG 60.977 63.158 0.00 0.00 38.76 5.14
4357 11685 2.994995 GGCTTTGGGGTTTCCGGG 60.995 66.667 0.00 0.00 38.76 5.73
4358 11686 2.203582 GCTTTGGGGTTTCCGGGT 60.204 61.111 0.00 0.00 38.76 5.28
4359 11687 2.570284 GCTTTGGGGTTTCCGGGTG 61.570 63.158 0.00 0.00 38.76 4.61
4360 11688 1.906333 CTTTGGGGTTTCCGGGTGG 60.906 63.158 0.00 0.00 38.76 4.61
4361 11689 4.607025 TTGGGGTTTCCGGGTGGC 62.607 66.667 0.00 0.00 38.76 5.01
4393 11721 4.269523 AGAGGCGTTGCTGGGCAA 62.270 61.111 0.51 0.51 46.80 4.52
4400 11728 3.063704 TTGCTGGGCAAGATGGCG 61.064 61.111 0.00 0.00 43.99 5.69
4417 11745 2.280797 GCGGCCTGGCGATGATTA 60.281 61.111 17.76 0.00 0.00 1.75
4418 11746 2.320587 GCGGCCTGGCGATGATTAG 61.321 63.158 17.76 0.00 0.00 1.73
4419 11747 1.069765 CGGCCTGGCGATGATTAGT 59.930 57.895 13.40 0.00 0.00 2.24
4420 11748 1.224069 CGGCCTGGCGATGATTAGTG 61.224 60.000 13.40 0.00 0.00 2.74
4421 11749 0.106708 GGCCTGGCGATGATTAGTGA 59.893 55.000 13.40 0.00 0.00 3.41
4422 11750 1.506493 GCCTGGCGATGATTAGTGAG 58.494 55.000 1.35 0.00 0.00 3.51
4423 11751 1.506493 CCTGGCGATGATTAGTGAGC 58.494 55.000 0.00 0.00 0.00 4.26
4424 11752 1.069823 CCTGGCGATGATTAGTGAGCT 59.930 52.381 0.00 0.00 0.00 4.09
4425 11753 2.402305 CTGGCGATGATTAGTGAGCTC 58.598 52.381 6.82 6.82 0.00 4.09
4426 11754 1.756538 TGGCGATGATTAGTGAGCTCA 59.243 47.619 13.74 13.74 0.00 4.26
4427 11755 2.168313 TGGCGATGATTAGTGAGCTCAA 59.832 45.455 20.19 2.92 0.00 3.02
4428 11756 2.799412 GGCGATGATTAGTGAGCTCAAG 59.201 50.000 20.19 2.87 0.00 3.02
4429 11757 3.491619 GGCGATGATTAGTGAGCTCAAGA 60.492 47.826 20.19 6.33 0.00 3.02
4430 11758 4.115516 GCGATGATTAGTGAGCTCAAGAA 58.884 43.478 20.19 15.65 0.00 2.52
4431 11759 4.208873 GCGATGATTAGTGAGCTCAAGAAG 59.791 45.833 20.19 4.57 0.00 2.85
4440 11768 4.085302 CTCAAGAAGCCGAGCTCG 57.915 61.111 29.06 29.06 38.25 5.03
4441 11769 1.214062 CTCAAGAAGCCGAGCTCGT 59.786 57.895 32.41 16.41 38.25 4.18
4442 11770 0.389166 CTCAAGAAGCCGAGCTCGTT 60.389 55.000 32.41 22.08 38.25 3.85
4443 11771 0.388649 TCAAGAAGCCGAGCTCGTTC 60.389 55.000 32.41 27.93 38.25 3.95
4444 11772 1.444553 AAGAAGCCGAGCTCGTTCG 60.445 57.895 32.41 19.51 38.25 3.95
4445 11773 3.546397 GAAGCCGAGCTCGTTCGC 61.546 66.667 32.41 27.40 38.25 4.70
4449 11777 4.753877 CCGAGCTCGTTCGCGACA 62.754 66.667 32.41 0.00 45.62 4.35
4450 11778 2.577112 CGAGCTCGTTCGCGACAT 60.577 61.111 27.79 0.00 45.62 3.06
4451 11779 2.560151 CGAGCTCGTTCGCGACATC 61.560 63.158 27.79 1.13 45.62 3.06
4452 11780 2.202623 AGCTCGTTCGCGACATCC 60.203 61.111 9.15 0.00 45.62 3.51
4453 11781 2.506217 GCTCGTTCGCGACATCCA 60.506 61.111 9.15 0.00 45.62 3.41
4454 11782 2.092291 GCTCGTTCGCGACATCCAA 61.092 57.895 9.15 0.00 45.62 3.53
4455 11783 1.702299 CTCGTTCGCGACATCCAAC 59.298 57.895 9.15 1.43 45.62 3.77
4456 11784 1.006825 CTCGTTCGCGACATCCAACA 61.007 55.000 9.15 0.00 45.62 3.33
4457 11785 1.006825 TCGTTCGCGACATCCAACAG 61.007 55.000 9.15 0.09 45.62 3.16
4458 11786 1.787847 GTTCGCGACATCCAACAGG 59.212 57.895 9.15 0.00 0.00 4.00
4459 11787 0.669318 GTTCGCGACATCCAACAGGA 60.669 55.000 9.15 0.00 35.50 3.86
4460 11788 0.034198 TTCGCGACATCCAACAGGAA 59.966 50.000 9.15 0.00 34.49 3.36
4461 11789 0.389817 TCGCGACATCCAACAGGAAG 60.390 55.000 3.71 0.00 34.49 3.46
4462 11790 1.796796 GCGACATCCAACAGGAAGC 59.203 57.895 0.00 0.00 34.49 3.86
4463 11791 1.648467 GCGACATCCAACAGGAAGCC 61.648 60.000 0.00 0.00 34.49 4.35
4464 11792 0.321564 CGACATCCAACAGGAAGCCA 60.322 55.000 0.00 0.00 34.49 4.75
4465 11793 1.881925 CGACATCCAACAGGAAGCCAA 60.882 52.381 0.00 0.00 34.49 4.52
4466 11794 2.238521 GACATCCAACAGGAAGCCAAA 58.761 47.619 0.00 0.00 34.49 3.28
4467 11795 1.963515 ACATCCAACAGGAAGCCAAAC 59.036 47.619 0.00 0.00 34.49 2.93
4468 11796 2.242043 CATCCAACAGGAAGCCAAACT 58.758 47.619 0.00 0.00 34.49 2.66
4469 11797 2.452600 TCCAACAGGAAGCCAAACTT 57.547 45.000 0.00 0.00 42.98 2.66
4470 11798 2.745968 TCCAACAGGAAGCCAAACTTT 58.254 42.857 0.00 0.00 39.29 2.66
4471 11799 2.430332 TCCAACAGGAAGCCAAACTTTG 59.570 45.455 0.00 0.00 39.29 2.77
4472 11800 6.017960 ATCCAACAGGAAGCCAAACTTTGG 62.018 45.833 15.34 15.34 43.60 3.28
4493 11821 2.887152 GGCACCTCAATAACATCATCCC 59.113 50.000 0.00 0.00 0.00 3.85
4494 11822 3.435601 GGCACCTCAATAACATCATCCCT 60.436 47.826 0.00 0.00 0.00 4.20
4495 11823 3.567164 GCACCTCAATAACATCATCCCTG 59.433 47.826 0.00 0.00 0.00 4.45
4496 11824 4.785301 CACCTCAATAACATCATCCCTGT 58.215 43.478 0.00 0.00 0.00 4.00
4497 11825 5.687441 GCACCTCAATAACATCATCCCTGTA 60.687 44.000 0.00 0.00 0.00 2.74
4498 11826 6.356556 CACCTCAATAACATCATCCCTGTAA 58.643 40.000 0.00 0.00 0.00 2.41
4499 11827 6.828273 CACCTCAATAACATCATCCCTGTAAA 59.172 38.462 0.00 0.00 0.00 2.01
4500 11828 6.828785 ACCTCAATAACATCATCCCTGTAAAC 59.171 38.462 0.00 0.00 0.00 2.01
4501 11829 7.056635 CCTCAATAACATCATCCCTGTAAACT 58.943 38.462 0.00 0.00 0.00 2.66
4502 11830 8.210946 CCTCAATAACATCATCCCTGTAAACTA 58.789 37.037 0.00 0.00 0.00 2.24
4503 11831 9.613428 CTCAATAACATCATCCCTGTAAACTAA 57.387 33.333 0.00 0.00 0.00 2.24
4504 11832 9.967451 TCAATAACATCATCCCTGTAAACTAAA 57.033 29.630 0.00 0.00 0.00 1.85
4506 11834 8.747538 ATAACATCATCCCTGTAAACTAAACC 57.252 34.615 0.00 0.00 0.00 3.27
4507 11835 5.506708 ACATCATCCCTGTAAACTAAACCC 58.493 41.667 0.00 0.00 0.00 4.11
4508 11836 5.014755 ACATCATCCCTGTAAACTAAACCCA 59.985 40.000 0.00 0.00 0.00 4.51
4509 11837 5.789574 TCATCCCTGTAAACTAAACCCAT 57.210 39.130 0.00 0.00 0.00 4.00
4510 11838 6.147437 TCATCCCTGTAAACTAAACCCATT 57.853 37.500 0.00 0.00 0.00 3.16
4511 11839 5.949354 TCATCCCTGTAAACTAAACCCATTG 59.051 40.000 0.00 0.00 0.00 2.82
4512 11840 5.327737 TCCCTGTAAACTAAACCCATTGT 57.672 39.130 0.00 0.00 0.00 2.71
4513 11841 6.451292 TCCCTGTAAACTAAACCCATTGTA 57.549 37.500 0.00 0.00 0.00 2.41
4514 11842 7.034967 TCCCTGTAAACTAAACCCATTGTAT 57.965 36.000 0.00 0.00 0.00 2.29
4515 11843 7.471890 TCCCTGTAAACTAAACCCATTGTATT 58.528 34.615 0.00 0.00 0.00 1.89
4516 11844 7.394923 TCCCTGTAAACTAAACCCATTGTATTG 59.605 37.037 0.00 0.00 0.00 1.90
4517 11845 7.363443 CCCTGTAAACTAAACCCATTGTATTGG 60.363 40.741 0.00 0.00 36.46 3.16
4525 11853 1.035139 CCATTGTATTGGGGCTGAGC 58.965 55.000 0.00 0.00 32.80 4.26
4526 11854 1.685803 CCATTGTATTGGGGCTGAGCA 60.686 52.381 6.82 0.00 32.80 4.26
4527 11855 1.679680 CATTGTATTGGGGCTGAGCAG 59.320 52.381 6.82 0.00 0.00 4.24
4537 11865 2.901813 CTGAGCAGCCTCCTCCTG 59.098 66.667 0.00 0.00 37.29 3.86
4542 11870 2.583520 CAGCCTCCTCCTGCTCAC 59.416 66.667 0.00 0.00 35.12 3.51
4543 11871 1.988956 CAGCCTCCTCCTGCTCACT 60.989 63.158 0.00 0.00 35.12 3.41
4544 11872 1.988956 AGCCTCCTCCTGCTCACTG 60.989 63.158 0.00 0.00 30.33 3.66
4545 11873 2.583520 CCTCCTCCTGCTCACTGC 59.416 66.667 0.00 0.00 43.25 4.40
4546 11874 2.583520 CTCCTCCTGCTCACTGCC 59.416 66.667 0.00 0.00 42.00 4.85
4547 11875 2.203832 TCCTCCTGCTCACTGCCA 60.204 61.111 0.00 0.00 42.00 4.92
4548 11876 1.834856 CTCCTCCTGCTCACTGCCAA 61.835 60.000 0.00 0.00 42.00 4.52
4549 11877 1.376942 CCTCCTGCTCACTGCCAAG 60.377 63.158 0.00 0.00 42.00 3.61
4550 11878 2.033141 TCCTGCTCACTGCCAAGC 59.967 61.111 0.00 0.00 42.00 4.01
4551 11879 2.033757 CCTGCTCACTGCCAAGCT 59.966 61.111 0.00 0.00 42.00 3.74
4552 11880 2.039405 CCTGCTCACTGCCAAGCTC 61.039 63.158 0.00 0.00 42.00 4.09
4553 11881 1.302271 CTGCTCACTGCCAAGCTCA 60.302 57.895 0.00 0.00 42.00 4.26
4554 11882 0.887836 CTGCTCACTGCCAAGCTCAA 60.888 55.000 0.00 0.00 42.00 3.02
4555 11883 1.168407 TGCTCACTGCCAAGCTCAAC 61.168 55.000 0.00 0.00 42.00 3.18
4556 11884 0.888285 GCTCACTGCCAAGCTCAACT 60.888 55.000 0.00 0.00 35.60 3.16
4557 11885 1.602311 CTCACTGCCAAGCTCAACTT 58.398 50.000 0.00 0.00 40.05 2.66
4558 11886 1.534595 CTCACTGCCAAGCTCAACTTC 59.465 52.381 0.00 0.00 36.04 3.01
4559 11887 0.236711 CACTGCCAAGCTCAACTTCG 59.763 55.000 0.00 0.00 36.04 3.79
4560 11888 1.208614 CTGCCAAGCTCAACTTCGC 59.791 57.895 0.00 0.00 42.28 4.70
4561 11889 2.192608 CTGCCAAGCTCAACTTCGCC 62.193 60.000 0.00 0.00 41.36 5.54
4562 11890 2.260869 GCCAAGCTCAACTTCGCCA 61.261 57.895 0.00 0.00 36.59 5.69
4563 11891 1.589716 GCCAAGCTCAACTTCGCCAT 61.590 55.000 0.00 0.00 36.59 4.40
4564 11892 0.449388 CCAAGCTCAACTTCGCCATC 59.551 55.000 0.00 0.00 36.04 3.51
4565 11893 1.446907 CAAGCTCAACTTCGCCATCT 58.553 50.000 0.00 0.00 36.04 2.90
4566 11894 2.621338 CAAGCTCAACTTCGCCATCTA 58.379 47.619 0.00 0.00 36.04 1.98
4567 11895 2.593346 AGCTCAACTTCGCCATCTAG 57.407 50.000 0.00 0.00 0.00 2.43
4568 11896 2.103373 AGCTCAACTTCGCCATCTAGA 58.897 47.619 0.00 0.00 0.00 2.43
4569 11897 2.100584 AGCTCAACTTCGCCATCTAGAG 59.899 50.000 0.00 0.00 0.00 2.43
4570 11898 2.159170 GCTCAACTTCGCCATCTAGAGT 60.159 50.000 0.00 0.00 0.00 3.24
4571 11899 3.443037 CTCAACTTCGCCATCTAGAGTG 58.557 50.000 0.00 0.00 0.00 3.51
4572 11900 1.929836 CAACTTCGCCATCTAGAGTGC 59.070 52.381 0.00 2.28 0.00 4.40
4574 11902 0.101399 CTTCGCCATCTAGAGTGCGT 59.899 55.000 27.61 0.00 46.57 5.24
4575 11903 1.333931 CTTCGCCATCTAGAGTGCGTA 59.666 52.381 27.61 21.09 46.57 4.42
4576 11904 0.945099 TCGCCATCTAGAGTGCGTAG 59.055 55.000 27.61 9.72 46.57 3.51
4602 11930 4.690149 AGGAAGGCCTACTTTTCTCTACT 58.310 43.478 5.16 0.00 44.74 2.57
4603 11931 4.712829 AGGAAGGCCTACTTTTCTCTACTC 59.287 45.833 5.16 0.00 44.74 2.59
4604 11932 4.712829 GGAAGGCCTACTTTTCTCTACTCT 59.287 45.833 5.16 0.00 40.21 3.24
4605 11933 5.163488 GGAAGGCCTACTTTTCTCTACTCTC 60.163 48.000 5.16 0.00 40.21 3.20
4606 11934 5.201363 AGGCCTACTTTTCTCTACTCTCT 57.799 43.478 1.29 0.00 0.00 3.10
4607 11935 5.585894 AGGCCTACTTTTCTCTACTCTCTT 58.414 41.667 1.29 0.00 0.00 2.85
4608 11936 6.020389 AGGCCTACTTTTCTCTACTCTCTTT 58.980 40.000 1.29 0.00 0.00 2.52
4609 11937 6.153851 AGGCCTACTTTTCTCTACTCTCTTTC 59.846 42.308 1.29 0.00 0.00 2.62
4610 11938 6.153851 GGCCTACTTTTCTCTACTCTCTTTCT 59.846 42.308 0.00 0.00 0.00 2.52
4611 11939 7.339976 GGCCTACTTTTCTCTACTCTCTTTCTA 59.660 40.741 0.00 0.00 0.00 2.10
4612 11940 8.909923 GCCTACTTTTCTCTACTCTCTTTCTAT 58.090 37.037 0.00 0.00 0.00 1.98
4615 11943 8.795842 ACTTTTCTCTACTCTCTTTCTATCGA 57.204 34.615 0.00 0.00 0.00 3.59
4616 11944 9.403583 ACTTTTCTCTACTCTCTTTCTATCGAT 57.596 33.333 2.16 2.16 0.00 3.59
4617 11945 9.663904 CTTTTCTCTACTCTCTTTCTATCGATG 57.336 37.037 8.54 0.00 0.00 3.84
4618 11946 7.737972 TTCTCTACTCTCTTTCTATCGATGG 57.262 40.000 8.54 5.03 0.00 3.51
4619 11947 7.068686 TCTCTACTCTCTTTCTATCGATGGA 57.931 40.000 7.46 7.46 0.00 3.41
4620 11948 7.510407 TCTCTACTCTCTTTCTATCGATGGAA 58.490 38.462 19.06 19.06 0.00 3.53
4621 11949 8.160765 TCTCTACTCTCTTTCTATCGATGGAAT 58.839 37.037 22.78 10.85 0.00 3.01
4622 11950 8.105097 TCTACTCTCTTTCTATCGATGGAATG 57.895 38.462 22.78 23.06 0.00 2.67
4623 11951 6.968263 ACTCTCTTTCTATCGATGGAATGA 57.032 37.500 27.18 27.18 32.98 2.57
4624 11952 7.537596 ACTCTCTTTCTATCGATGGAATGAT 57.462 36.000 28.33 17.61 33.34 2.45
4625 11953 8.642935 ACTCTCTTTCTATCGATGGAATGATA 57.357 34.615 28.33 22.88 33.34 2.15
4626 11954 8.519526 ACTCTCTTTCTATCGATGGAATGATAC 58.480 37.037 28.33 0.00 33.34 2.24
4627 11955 7.530863 TCTCTTTCTATCGATGGAATGATACG 58.469 38.462 28.33 20.78 33.34 3.06
4628 11956 6.093404 TCTTTCTATCGATGGAATGATACGC 58.907 40.000 26.08 0.00 30.37 4.42
4629 11957 5.385509 TTCTATCGATGGAATGATACGCA 57.614 39.130 19.06 0.00 0.00 5.24
4630 11958 5.582689 TCTATCGATGGAATGATACGCAT 57.417 39.130 9.27 0.00 39.43 4.73
4631 11959 5.582550 TCTATCGATGGAATGATACGCATC 58.417 41.667 9.27 0.00 35.78 3.91
4632 11960 3.658757 TCGATGGAATGATACGCATCA 57.341 42.857 0.00 0.00 45.15 3.07
4633 11961 3.988819 TCGATGGAATGATACGCATCAA 58.011 40.909 1.68 0.00 44.27 2.57
4634 11962 4.568956 TCGATGGAATGATACGCATCAAT 58.431 39.130 1.68 0.00 44.27 2.57
4635 11963 4.389687 TCGATGGAATGATACGCATCAATG 59.610 41.667 1.68 0.00 44.27 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.928492 AGATCTTGTCTCTGTGTTTTTCTCTC 59.072 38.462 0.00 0.00 28.45 3.20
6 7 7.251704 TGAAGATCTTGTCTCTGTGTTTTTC 57.748 36.000 14.00 0.00 35.67 2.29
31 32 2.814913 AAATCACCTCGCCCCGAACC 62.815 60.000 0.00 0.00 34.74 3.62
32 33 1.376812 AAATCACCTCGCCCCGAAC 60.377 57.895 0.00 0.00 34.74 3.95
33 34 1.376683 CAAATCACCTCGCCCCGAA 60.377 57.895 0.00 0.00 34.74 4.30
35 36 3.508840 GCAAATCACCTCGCCCCG 61.509 66.667 0.00 0.00 0.00 5.73
82 85 1.227102 GGTGGCTGGGTGCATCATA 59.773 57.895 0.00 0.00 45.15 2.15
85 88 3.667217 ATGGGTGGCTGGGTGCATC 62.667 63.158 0.00 0.00 45.15 3.91
108 111 6.192044 GTGGGAAAAATATACTCAAGGGGAA 58.808 40.000 0.00 0.00 0.00 3.97
110 113 5.515106 TGTGGGAAAAATATACTCAAGGGG 58.485 41.667 0.00 0.00 0.00 4.79
162 166 5.175090 AGATTTATCTTAGGCGCAAAAGC 57.825 39.130 10.83 0.55 31.97 3.51
214 218 1.200020 CTTTGAGGTTTGACCGATGGC 59.800 52.381 0.00 0.00 44.90 4.40
361 371 5.009610 GTCAAACAATTCTTGCCTAGGTGAA 59.990 40.000 11.31 12.70 0.00 3.18
391 401 3.434940 AACTAAAGCCTGGGTCGATTT 57.565 42.857 0.00 0.00 0.00 2.17
418 428 6.879400 ACTTATCAAGGAGTGTTCCACTATC 58.121 40.000 0.00 0.00 45.44 2.08
419 429 6.875972 ACTTATCAAGGAGTGTTCCACTAT 57.124 37.500 0.00 0.00 45.44 2.12
422 432 5.869888 CAGTACTTATCAAGGAGTGTTCCAC 59.130 44.000 0.00 0.00 46.64 4.02
488 754 8.977412 TCACTCATTTCAGTCCATATGTAGTTA 58.023 33.333 1.24 0.00 0.00 2.24
516 782 6.727824 ATGTAGACATGCTTTAGTGTGTTC 57.272 37.500 0.00 0.00 34.83 3.18
563 830 5.522460 CCTCCGTTCACAAATGTATACGATT 59.478 40.000 16.40 0.00 36.65 3.34
566 833 3.554324 CCCTCCGTTCACAAATGTATACG 59.446 47.826 10.75 10.75 35.31 3.06
567 834 4.761975 TCCCTCCGTTCACAAATGTATAC 58.238 43.478 0.00 0.00 0.00 1.47
667 934 3.365265 GGGCCAAACCTGTGCTCG 61.365 66.667 4.39 0.00 39.10 5.03
703 970 2.738521 GCTCACACATCGTGCCGT 60.739 61.111 0.00 0.00 45.92 5.68
760 1027 6.436532 AGGACCCGAATACGACTGAAATATAT 59.563 38.462 0.00 0.00 42.66 0.86
761 1028 5.771666 AGGACCCGAATACGACTGAAATATA 59.228 40.000 0.00 0.00 42.66 0.86
802 1074 0.251742 TTAAAGGACCCGACTCCCGA 60.252 55.000 0.00 0.00 41.76 5.14
803 1075 0.609662 TTTAAAGGACCCGACTCCCG 59.390 55.000 0.00 0.00 38.18 5.14
804 1076 1.678123 GCTTTAAAGGACCCGACTCCC 60.678 57.143 16.78 0.00 0.00 4.30
805 1077 1.678123 GGCTTTAAAGGACCCGACTCC 60.678 57.143 16.78 2.54 0.00 3.85
806 1078 1.735386 GGCTTTAAAGGACCCGACTC 58.265 55.000 16.78 0.00 0.00 3.36
807 1079 0.036671 CGGCTTTAAAGGACCCGACT 60.037 55.000 21.37 0.00 41.34 4.18
808 1080 0.321034 ACGGCTTTAAAGGACCCGAC 60.321 55.000 28.41 8.46 41.34 4.79
902 1174 0.759959 TGGTGTACGAAGGGAGCAAA 59.240 50.000 0.00 0.00 0.00 3.68
917 1189 1.330521 GTGCGGCACAACTATATGGTG 59.669 52.381 27.10 0.00 39.79 4.17
918 1190 1.663695 GTGCGGCACAACTATATGGT 58.336 50.000 27.10 0.00 34.08 3.55
955 1242 3.056536 TGCTGCTCTATTTCTTGAGACGT 60.057 43.478 0.00 0.00 32.44 4.34
1149 1436 1.073199 CGGTTGGAAGAAGCCCAGT 59.927 57.895 0.00 0.00 34.77 4.00
1277 1573 3.723235 GAGATTGCGAGCTCCGGCA 62.723 63.158 11.70 11.70 41.70 5.69
1311 1607 2.697751 GGTGCTCTGGTCTATGATGACT 59.302 50.000 0.00 0.00 37.16 3.41
1590 1886 0.038159 AGGCAGAACCGTTCTTCTCG 60.038 55.000 11.24 1.80 46.52 4.04
1758 2054 2.801699 CGCGTCATCCAGCAAGGTATAA 60.802 50.000 0.00 0.00 39.02 0.98
1864 2160 0.536233 TGGTCGTTGGGATTGGTGTG 60.536 55.000 0.00 0.00 0.00 3.82
1872 2168 1.073125 ACATCACAATGGTCGTTGGGA 59.927 47.619 9.90 9.90 44.88 4.37
2184 2480 6.285990 ACATCCGTTGTAACCATAGGAATAC 58.714 40.000 0.00 0.00 36.57 1.89
2274 2570 2.541556 CGGAGGTAAAGAGTAGCTTGC 58.458 52.381 0.00 0.00 36.80 4.01
2809 9562 2.028130 CAGTCCTCTAGCAACTCCGAT 58.972 52.381 0.00 0.00 0.00 4.18
3377 10133 2.223144 TGCTTACATTTCGAGTGTGCAC 59.777 45.455 10.75 10.75 0.00 4.57
3400 10156 5.055144 TGGTATGTTTGTGCAAGTACGTTA 58.945 37.500 0.00 0.00 0.00 3.18
3647 10433 0.678684 CATGTCATGGGTGAGCTGCA 60.679 55.000 4.78 0.00 34.36 4.41
3721 10507 2.223876 GCCACTGGTATTTCATGCCATG 60.224 50.000 0.00 0.00 44.23 3.66
3722 10508 2.034124 GCCACTGGTATTTCATGCCAT 58.966 47.619 0.00 0.00 44.23 4.40
3723 10509 1.473258 GCCACTGGTATTTCATGCCA 58.527 50.000 0.00 0.00 43.04 4.92
3724 10510 0.381801 CGCCACTGGTATTTCATGCC 59.618 55.000 0.00 0.00 35.37 4.40
3725 10511 0.248621 GCGCCACTGGTATTTCATGC 60.249 55.000 0.00 0.00 0.00 4.06
3784 10570 9.345517 CAACAATATATCCTGAAAAACACAGTG 57.654 33.333 0.00 0.00 34.04 3.66
3829 10639 4.018050 ACCTCCAATCTTAAAGAGTGCCAT 60.018 41.667 0.00 0.00 38.84 4.40
3832 10642 4.154918 CACACCTCCAATCTTAAAGAGTGC 59.845 45.833 0.00 0.00 38.84 4.40
3923 10733 9.817365 CAAATTATACTATATCTGTGCTTGCAC 57.183 33.333 17.73 17.73 0.00 4.57
4068 11358 0.899019 TGCGGCACAACTATCCACTA 59.101 50.000 0.00 0.00 0.00 2.74
4134 11462 2.831742 CCTGATGGCGCCAATGCT 60.832 61.111 36.33 18.31 34.43 3.79
4234 11562 2.575993 CGGTGACAGGAGCAGGAG 59.424 66.667 0.00 0.00 0.00 3.69
4279 11607 3.486209 CCCCGAAAATCCGAAATACGTTG 60.486 47.826 0.00 0.00 40.78 4.10
4280 11608 2.679336 CCCCGAAAATCCGAAATACGTT 59.321 45.455 0.00 0.00 40.78 3.99
4281 11609 2.282407 CCCCGAAAATCCGAAATACGT 58.718 47.619 0.00 0.00 40.78 3.57
4282 11610 1.003223 GCCCCGAAAATCCGAAATACG 60.003 52.381 0.00 0.00 42.18 3.06
4283 11611 2.018515 TGCCCCGAAAATCCGAAATAC 58.981 47.619 0.00 0.00 0.00 1.89
4284 11612 2.294074 CTGCCCCGAAAATCCGAAATA 58.706 47.619 0.00 0.00 0.00 1.40
4285 11613 1.102978 CTGCCCCGAAAATCCGAAAT 58.897 50.000 0.00 0.00 0.00 2.17
4286 11614 0.963355 CCTGCCCCGAAAATCCGAAA 60.963 55.000 0.00 0.00 0.00 3.46
4287 11615 1.377987 CCTGCCCCGAAAATCCGAA 60.378 57.895 0.00 0.00 0.00 4.30
4288 11616 2.270850 CCTGCCCCGAAAATCCGA 59.729 61.111 0.00 0.00 0.00 4.55
4289 11617 2.260088 TACCCTGCCCCGAAAATCCG 62.260 60.000 0.00 0.00 0.00 4.18
4290 11618 0.465642 CTACCCTGCCCCGAAAATCC 60.466 60.000 0.00 0.00 0.00 3.01
4291 11619 0.255033 ACTACCCTGCCCCGAAAATC 59.745 55.000 0.00 0.00 0.00 2.17
4292 11620 0.255033 GACTACCCTGCCCCGAAAAT 59.745 55.000 0.00 0.00 0.00 1.82
4293 11621 1.681076 GACTACCCTGCCCCGAAAA 59.319 57.895 0.00 0.00 0.00 2.29
4294 11622 2.295602 GGACTACCCTGCCCCGAAA 61.296 63.158 0.00 0.00 0.00 3.46
4295 11623 2.686106 GGACTACCCTGCCCCGAA 60.686 66.667 0.00 0.00 0.00 4.30
4296 11624 3.680196 AGGACTACCCTGCCCCGA 61.680 66.667 0.00 0.00 45.61 5.14
4304 11632 2.100418 GACCACGTTATCAGGACTACCC 59.900 54.545 0.00 0.00 36.73 3.69
4305 11633 2.100418 GGACCACGTTATCAGGACTACC 59.900 54.545 0.00 0.00 0.00 3.18
4306 11634 3.022406 AGGACCACGTTATCAGGACTAC 58.978 50.000 0.00 0.00 0.00 2.73
4307 11635 3.021695 CAGGACCACGTTATCAGGACTA 58.978 50.000 0.00 0.00 0.00 2.59
4308 11636 1.825474 CAGGACCACGTTATCAGGACT 59.175 52.381 0.00 0.00 0.00 3.85
4309 11637 1.134788 CCAGGACCACGTTATCAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
4310 11638 1.191535 CCAGGACCACGTTATCAGGA 58.808 55.000 0.00 0.00 0.00 3.86
4311 11639 0.902531 ACCAGGACCACGTTATCAGG 59.097 55.000 0.00 0.00 0.00 3.86
4312 11640 3.518590 GTTACCAGGACCACGTTATCAG 58.481 50.000 0.00 0.00 0.00 2.90
4313 11641 2.234414 GGTTACCAGGACCACGTTATCA 59.766 50.000 0.00 0.00 37.14 2.15
4314 11642 2.234414 TGGTTACCAGGACCACGTTATC 59.766 50.000 0.00 0.00 42.06 1.75
4315 11643 2.259012 TGGTTACCAGGACCACGTTAT 58.741 47.619 0.00 0.00 42.06 1.89
4316 11644 1.714541 TGGTTACCAGGACCACGTTA 58.285 50.000 0.00 0.00 42.06 3.18
4317 11645 2.530491 TGGTTACCAGGACCACGTT 58.470 52.632 0.00 0.00 42.06 3.99
4318 11646 4.299009 TGGTTACCAGGACCACGT 57.701 55.556 0.00 0.00 42.06 4.49
4328 11656 0.958876 CCAAAGCCTCGGTGGTTACC 60.959 60.000 0.00 0.00 43.89 2.85
4329 11657 0.958876 CCCAAAGCCTCGGTGGTTAC 60.959 60.000 0.00 0.00 38.35 2.50
4330 11658 1.377229 CCCAAAGCCTCGGTGGTTA 59.623 57.895 0.00 0.00 38.35 2.85
4331 11659 2.115266 CCCAAAGCCTCGGTGGTT 59.885 61.111 0.00 0.00 38.35 3.67
4332 11660 3.966543 CCCCAAAGCCTCGGTGGT 61.967 66.667 0.00 0.00 38.35 4.16
4333 11661 2.994643 AAACCCCAAAGCCTCGGTGG 62.995 60.000 0.00 0.00 39.35 4.61
4334 11662 1.524008 GAAACCCCAAAGCCTCGGTG 61.524 60.000 0.00 0.00 0.00 4.94
4335 11663 1.228459 GAAACCCCAAAGCCTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
4336 11664 1.977009 GGAAACCCCAAAGCCTCGG 60.977 63.158 0.00 0.00 34.14 4.63
4337 11665 2.332654 CGGAAACCCCAAAGCCTCG 61.333 63.158 0.00 0.00 34.14 4.63
4338 11666 1.977009 CCGGAAACCCCAAAGCCTC 60.977 63.158 0.00 0.00 34.14 4.70
4339 11667 2.117423 CCGGAAACCCCAAAGCCT 59.883 61.111 0.00 0.00 34.14 4.58
4340 11668 2.994995 CCCGGAAACCCCAAAGCC 60.995 66.667 0.73 0.00 34.14 4.35
4341 11669 2.203582 ACCCGGAAACCCCAAAGC 60.204 61.111 0.73 0.00 34.14 3.51
4342 11670 1.906333 CCACCCGGAAACCCCAAAG 60.906 63.158 0.73 0.00 34.14 2.77
4343 11671 2.198980 CCACCCGGAAACCCCAAA 59.801 61.111 0.73 0.00 34.14 3.28
4344 11672 4.607025 GCCACCCGGAAACCCCAA 62.607 66.667 0.73 0.00 34.14 4.12
4376 11704 4.269523 TTGCCCAGCAACGCCTCT 62.270 61.111 0.00 0.00 43.99 3.69
4377 11705 3.741476 CTTGCCCAGCAACGCCTC 61.741 66.667 0.00 0.00 43.99 4.70
4378 11706 3.574074 ATCTTGCCCAGCAACGCCT 62.574 57.895 0.00 0.00 43.99 5.52
4379 11707 3.064324 ATCTTGCCCAGCAACGCC 61.064 61.111 0.00 0.00 43.99 5.68
4380 11708 2.180017 CATCTTGCCCAGCAACGC 59.820 61.111 0.00 0.00 43.99 4.84
4381 11709 2.879907 CCATCTTGCCCAGCAACG 59.120 61.111 0.00 0.00 43.99 4.10
4382 11710 2.575461 GCCATCTTGCCCAGCAAC 59.425 61.111 0.00 0.00 43.99 4.17
4383 11711 3.063704 CGCCATCTTGCCCAGCAA 61.064 61.111 1.57 1.57 46.80 3.91
4400 11728 2.280797 TAATCATCGCCAGGCCGC 60.281 61.111 5.63 0.00 0.00 6.53
4401 11729 1.069765 ACTAATCATCGCCAGGCCG 59.930 57.895 5.63 0.84 0.00 6.13
4402 11730 0.106708 TCACTAATCATCGCCAGGCC 59.893 55.000 5.63 0.00 0.00 5.19
4403 11731 1.506493 CTCACTAATCATCGCCAGGC 58.494 55.000 0.00 0.00 0.00 4.85
4404 11732 1.069823 AGCTCACTAATCATCGCCAGG 59.930 52.381 0.00 0.00 0.00 4.45
4405 11733 2.223900 TGAGCTCACTAATCATCGCCAG 60.224 50.000 13.74 0.00 0.00 4.85
4406 11734 1.756538 TGAGCTCACTAATCATCGCCA 59.243 47.619 13.74 0.00 0.00 5.69
4407 11735 2.515926 TGAGCTCACTAATCATCGCC 57.484 50.000 13.74 0.00 0.00 5.54
4408 11736 3.711086 TCTTGAGCTCACTAATCATCGC 58.289 45.455 18.03 0.00 0.00 4.58
4409 11737 5.886715 CTTCTTGAGCTCACTAATCATCG 57.113 43.478 18.03 0.00 0.00 3.84
4423 11751 0.389166 AACGAGCTCGGCTTCTTGAG 60.389 55.000 36.93 8.66 44.95 3.02
4424 11752 0.388649 GAACGAGCTCGGCTTCTTGA 60.389 55.000 36.93 0.00 44.95 3.02
4425 11753 1.678269 CGAACGAGCTCGGCTTCTTG 61.678 60.000 36.93 17.60 44.95 3.02
4426 11754 1.444553 CGAACGAGCTCGGCTTCTT 60.445 57.895 36.93 23.04 44.95 2.52
4427 11755 2.179517 CGAACGAGCTCGGCTTCT 59.820 61.111 36.93 15.66 44.95 2.85
4428 11756 3.546397 GCGAACGAGCTCGGCTTC 61.546 66.667 36.93 29.08 44.95 3.86
4439 11767 1.416049 CTGTTGGATGTCGCGAACG 59.584 57.895 12.06 0.00 42.01 3.95
4440 11768 0.669318 TCCTGTTGGATGTCGCGAAC 60.669 55.000 12.06 4.60 37.46 3.95
4441 11769 0.034198 TTCCTGTTGGATGTCGCGAA 59.966 50.000 12.06 1.13 42.81 4.70
4442 11770 0.389817 CTTCCTGTTGGATGTCGCGA 60.390 55.000 3.71 3.71 42.81 5.87
4443 11771 1.970917 GCTTCCTGTTGGATGTCGCG 61.971 60.000 0.00 0.00 42.81 5.87
4444 11772 1.648467 GGCTTCCTGTTGGATGTCGC 61.648 60.000 0.00 0.00 42.81 5.19
4445 11773 0.321564 TGGCTTCCTGTTGGATGTCG 60.322 55.000 0.00 0.00 42.85 4.35
4446 11774 1.909700 TTGGCTTCCTGTTGGATGTC 58.090 50.000 0.00 0.00 42.81 3.06
4447 11775 1.963515 GTTTGGCTTCCTGTTGGATGT 59.036 47.619 0.00 0.00 42.81 3.06
4448 11776 2.242043 AGTTTGGCTTCCTGTTGGATG 58.758 47.619 0.00 0.00 42.81 3.51
4449 11777 2.683211 AGTTTGGCTTCCTGTTGGAT 57.317 45.000 0.00 0.00 42.81 3.41
4450 11778 2.430332 CAAAGTTTGGCTTCCTGTTGGA 59.570 45.455 7.78 0.00 41.36 3.53
4451 11779 2.483538 CCAAAGTTTGGCTTCCTGTTGG 60.484 50.000 21.39 0.00 45.17 3.77
4452 11780 2.825205 CCAAAGTTTGGCTTCCTGTTG 58.175 47.619 21.39 0.00 45.17 3.33
4463 11791 4.202202 TGTTATTGAGGTGCCCAAAGTTTG 60.202 41.667 8.73 8.73 0.00 2.93
4464 11792 3.964031 TGTTATTGAGGTGCCCAAAGTTT 59.036 39.130 0.00 0.00 0.00 2.66
4465 11793 3.571590 TGTTATTGAGGTGCCCAAAGTT 58.428 40.909 0.00 0.00 0.00 2.66
4466 11794 3.237268 TGTTATTGAGGTGCCCAAAGT 57.763 42.857 0.00 0.00 0.00 2.66
4467 11795 3.763360 TGATGTTATTGAGGTGCCCAAAG 59.237 43.478 0.00 0.00 0.00 2.77
4468 11796 3.772387 TGATGTTATTGAGGTGCCCAAA 58.228 40.909 0.00 0.00 0.00 3.28
4469 11797 3.448093 TGATGTTATTGAGGTGCCCAA 57.552 42.857 0.00 0.00 0.00 4.12
4470 11798 3.554934 GATGATGTTATTGAGGTGCCCA 58.445 45.455 0.00 0.00 0.00 5.36
4471 11799 2.887152 GGATGATGTTATTGAGGTGCCC 59.113 50.000 0.00 0.00 0.00 5.36
4472 11800 2.887152 GGGATGATGTTATTGAGGTGCC 59.113 50.000 0.00 0.00 0.00 5.01
4473 11801 3.567164 CAGGGATGATGTTATTGAGGTGC 59.433 47.826 0.00 0.00 0.00 5.01
4474 11802 4.785301 ACAGGGATGATGTTATTGAGGTG 58.215 43.478 0.00 0.00 0.00 4.00
4475 11803 6.575244 TTACAGGGATGATGTTATTGAGGT 57.425 37.500 0.00 0.00 32.02 3.85
4476 11804 7.056635 AGTTTACAGGGATGATGTTATTGAGG 58.943 38.462 0.00 0.00 32.02 3.86
4477 11805 9.613428 TTAGTTTACAGGGATGATGTTATTGAG 57.387 33.333 0.00 0.00 32.02 3.02
4478 11806 9.967451 TTTAGTTTACAGGGATGATGTTATTGA 57.033 29.630 0.00 0.00 32.02 2.57
4480 11808 9.185680 GGTTTAGTTTACAGGGATGATGTTATT 57.814 33.333 0.00 0.00 32.02 1.40
4481 11809 7.778382 GGGTTTAGTTTACAGGGATGATGTTAT 59.222 37.037 0.00 0.00 32.02 1.89
4482 11810 7.114095 GGGTTTAGTTTACAGGGATGATGTTA 58.886 38.462 0.00 0.00 32.02 2.41
4483 11811 5.949952 GGGTTTAGTTTACAGGGATGATGTT 59.050 40.000 0.00 0.00 32.02 2.71
4484 11812 5.014755 TGGGTTTAGTTTACAGGGATGATGT 59.985 40.000 0.00 0.00 34.62 3.06
4485 11813 5.505780 TGGGTTTAGTTTACAGGGATGATG 58.494 41.667 0.00 0.00 0.00 3.07
4486 11814 5.789574 TGGGTTTAGTTTACAGGGATGAT 57.210 39.130 0.00 0.00 0.00 2.45
4487 11815 5.789574 ATGGGTTTAGTTTACAGGGATGA 57.210 39.130 0.00 0.00 0.00 2.92
4488 11816 5.714806 ACAATGGGTTTAGTTTACAGGGATG 59.285 40.000 0.00 0.00 0.00 3.51
4489 11817 5.899278 ACAATGGGTTTAGTTTACAGGGAT 58.101 37.500 0.00 0.00 0.00 3.85
4490 11818 5.327737 ACAATGGGTTTAGTTTACAGGGA 57.672 39.130 0.00 0.00 0.00 4.20
4491 11819 7.363443 CCAATACAATGGGTTTAGTTTACAGGG 60.363 40.741 0.00 0.00 36.79 4.45
4492 11820 7.543756 CCAATACAATGGGTTTAGTTTACAGG 58.456 38.462 0.00 0.00 36.79 4.00
4506 11834 1.035139 GCTCAGCCCCAATACAATGG 58.965 55.000 0.00 0.00 40.35 3.16
4507 11835 1.679680 CTGCTCAGCCCCAATACAATG 59.320 52.381 0.00 0.00 0.00 2.82
4508 11836 2.062971 CTGCTCAGCCCCAATACAAT 57.937 50.000 0.00 0.00 0.00 2.71
4509 11837 3.575506 CTGCTCAGCCCCAATACAA 57.424 52.632 0.00 0.00 0.00 2.41
4520 11848 2.901813 CAGGAGGAGGCTGCTCAG 59.098 66.667 32.72 22.16 36.47 3.35
4521 11849 3.397439 GCAGGAGGAGGCTGCTCA 61.397 66.667 32.72 0.00 36.47 4.26
4524 11852 3.397439 TGAGCAGGAGGAGGCTGC 61.397 66.667 0.00 0.00 41.22 5.25
4525 11853 1.988956 AGTGAGCAGGAGGAGGCTG 60.989 63.158 0.00 0.00 41.22 4.85
4526 11854 1.988956 CAGTGAGCAGGAGGAGGCT 60.989 63.158 0.00 0.00 44.48 4.58
4527 11855 2.583520 CAGTGAGCAGGAGGAGGC 59.416 66.667 0.00 0.00 0.00 4.70
4528 11856 2.583520 GCAGTGAGCAGGAGGAGG 59.416 66.667 0.00 0.00 44.79 4.30
4537 11865 0.888285 AGTTGAGCTTGGCAGTGAGC 60.888 55.000 1.37 1.37 44.65 4.26
4538 11866 1.534595 GAAGTTGAGCTTGGCAGTGAG 59.465 52.381 0.00 0.00 37.59 3.51
4539 11867 1.597742 GAAGTTGAGCTTGGCAGTGA 58.402 50.000 0.00 0.00 37.59 3.41
4540 11868 0.236711 CGAAGTTGAGCTTGGCAGTG 59.763 55.000 0.00 0.00 37.59 3.66
4541 11869 2.621763 CGAAGTTGAGCTTGGCAGT 58.378 52.632 0.00 0.00 37.59 4.40
4545 11873 0.449388 GATGGCGAAGTTGAGCTTGG 59.551 55.000 0.00 0.00 37.59 3.61
4546 11874 1.446907 AGATGGCGAAGTTGAGCTTG 58.553 50.000 0.00 0.00 37.59 4.01
4547 11875 2.497675 TCTAGATGGCGAAGTTGAGCTT 59.502 45.455 0.00 0.00 40.76 3.74
4548 11876 2.100584 CTCTAGATGGCGAAGTTGAGCT 59.899 50.000 0.00 0.00 0.00 4.09
4549 11877 2.159170 ACTCTAGATGGCGAAGTTGAGC 60.159 50.000 0.00 0.00 0.00 4.26
4550 11878 3.443037 CACTCTAGATGGCGAAGTTGAG 58.557 50.000 0.00 0.00 0.00 3.02
4551 11879 2.417379 GCACTCTAGATGGCGAAGTTGA 60.417 50.000 0.00 0.00 0.00 3.18
4552 11880 1.929836 GCACTCTAGATGGCGAAGTTG 59.070 52.381 0.00 0.00 0.00 3.16
4553 11881 2.301577 GCACTCTAGATGGCGAAGTT 57.698 50.000 0.00 0.00 0.00 2.66
4559 11887 0.385751 TGCTACGCACTCTAGATGGC 59.614 55.000 0.00 0.00 31.71 4.40
4560 11888 1.950216 TCTGCTACGCACTCTAGATGG 59.050 52.381 0.00 0.00 33.79 3.51
4561 11889 2.031245 CCTCTGCTACGCACTCTAGATG 60.031 54.545 0.00 0.00 33.79 2.90
4562 11890 2.158740 TCCTCTGCTACGCACTCTAGAT 60.159 50.000 0.00 0.00 33.79 1.98
4563 11891 1.209747 TCCTCTGCTACGCACTCTAGA 59.790 52.381 0.00 0.00 33.79 2.43
4564 11892 1.669604 TCCTCTGCTACGCACTCTAG 58.330 55.000 0.00 0.00 33.79 2.43
4565 11893 2.017782 CTTCCTCTGCTACGCACTCTA 58.982 52.381 0.00 0.00 33.79 2.43
4566 11894 0.814457 CTTCCTCTGCTACGCACTCT 59.186 55.000 0.00 0.00 33.79 3.24
4567 11895 0.179124 CCTTCCTCTGCTACGCACTC 60.179 60.000 0.00 0.00 33.79 3.51
4568 11896 1.893786 CCTTCCTCTGCTACGCACT 59.106 57.895 0.00 0.00 33.79 4.40
4569 11897 1.811679 GCCTTCCTCTGCTACGCAC 60.812 63.158 0.00 0.00 33.79 5.34
4570 11898 2.579201 GCCTTCCTCTGCTACGCA 59.421 61.111 0.00 0.00 36.92 5.24
4571 11899 1.392710 TAGGCCTTCCTCTGCTACGC 61.393 60.000 12.58 0.00 43.06 4.42
4572 11900 0.386113 GTAGGCCTTCCTCTGCTACG 59.614 60.000 12.58 0.00 43.06 3.51
4573 11901 1.783071 AGTAGGCCTTCCTCTGCTAC 58.217 55.000 12.58 0.00 43.06 3.58
4574 11902 2.552093 AAGTAGGCCTTCCTCTGCTA 57.448 50.000 12.58 0.00 43.06 3.49
4575 11903 1.662686 AAAGTAGGCCTTCCTCTGCT 58.337 50.000 12.58 0.00 43.06 4.24
4576 11904 2.026729 AGAAAAGTAGGCCTTCCTCTGC 60.027 50.000 12.58 0.00 43.06 4.26
4577 11905 3.517500 AGAGAAAAGTAGGCCTTCCTCTG 59.482 47.826 12.58 0.00 43.06 3.35
4578 11906 3.797312 AGAGAAAAGTAGGCCTTCCTCT 58.203 45.455 12.58 10.34 43.06 3.69
4579 11907 4.712829 AGTAGAGAAAAGTAGGCCTTCCTC 59.287 45.833 12.58 7.96 43.06 3.71
4580 11908 4.690149 AGTAGAGAAAAGTAGGCCTTCCT 58.310 43.478 12.58 4.32 46.57 3.36
4581 11909 4.712829 AGAGTAGAGAAAAGTAGGCCTTCC 59.287 45.833 12.58 1.32 31.27 3.46
4582 11910 5.655090 AGAGAGTAGAGAAAAGTAGGCCTTC 59.345 44.000 12.58 5.68 31.27 3.46
4583 11911 5.585894 AGAGAGTAGAGAAAAGTAGGCCTT 58.414 41.667 12.58 0.00 33.79 4.35
4584 11912 5.201363 AGAGAGTAGAGAAAAGTAGGCCT 57.799 43.478 11.78 11.78 0.00 5.19
4585 11913 5.925506 AAGAGAGTAGAGAAAAGTAGGCC 57.074 43.478 0.00 0.00 0.00 5.19
4586 11914 7.165460 AGAAAGAGAGTAGAGAAAAGTAGGC 57.835 40.000 0.00 0.00 0.00 3.93
4589 11917 9.887629 TCGATAGAAAGAGAGTAGAGAAAAGTA 57.112 33.333 0.00 0.00 46.15 2.24
4590 11918 8.795842 TCGATAGAAAGAGAGTAGAGAAAAGT 57.204 34.615 0.00 0.00 46.15 2.66
4604 11932 7.577616 ATGCGTATCATTCCATCGATAGAAAGA 60.578 37.037 12.62 12.62 40.07 2.52
4605 11933 6.533012 ATGCGTATCATTCCATCGATAGAAAG 59.467 38.462 10.31 6.43 40.07 2.62
4606 11934 6.398095 ATGCGTATCATTCCATCGATAGAAA 58.602 36.000 10.31 0.00 40.07 2.52
4607 11935 5.965922 ATGCGTATCATTCCATCGATAGAA 58.034 37.500 8.73 8.73 40.07 2.10
4608 11936 5.125417 TGATGCGTATCATTCCATCGATAGA 59.875 40.000 12.50 0.00 43.78 1.98
4609 11937 5.343249 TGATGCGTATCATTCCATCGATAG 58.657 41.667 12.50 0.00 38.37 2.08
4610 11938 5.323371 TGATGCGTATCATTCCATCGATA 57.677 39.130 12.50 0.00 38.37 2.92
4611 11939 4.192429 TGATGCGTATCATTCCATCGAT 57.808 40.909 12.50 0.00 38.37 3.59
4612 11940 3.658757 TGATGCGTATCATTCCATCGA 57.341 42.857 12.50 0.00 38.37 3.59
4613 11941 4.644954 CATTGATGCGTATCATTCCATCG 58.355 43.478 17.16 0.00 42.60 3.84
4614 11942 4.409570 GCATTGATGCGTATCATTCCATC 58.590 43.478 17.16 2.88 44.67 3.51
4615 11943 4.430137 GCATTGATGCGTATCATTCCAT 57.570 40.909 17.16 4.86 44.67 3.41
4616 11944 3.902261 GCATTGATGCGTATCATTCCA 57.098 42.857 17.16 2.45 44.67 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.