AutoCloner

Multiple sequence alignment - TraesCS2D01G297000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G297000	chr2D	100.000	2411	0	0	1	2411	379855164	379857574	0.000000e+00	4453
1	TraesCS2D01G297000	chr2B	92.692	1601	62	21	1	1583	451116991	451118554	0.000000e+00	2257
2	TraesCS2D01G297000	chr2B	92.508	307	7	3	2119	2411	451122096	451122400	2.220000e-115	425
3	TraesCS2D01G297000	chr2B	81.622	185	15	11	1789	1969	451956488	451956319	4.180000e-28	135
4	TraesCS2D01G297000	chr2A	88.763	1593	102	28	590	2123	514857157	514858731	0.000000e+00	1879
5	TraesCS2D01G297000	chr2A	91.546	414	35	0	996	1409	619760518	619760931	2.690000e-159	571
6	TraesCS2D01G297000	chr2A	75.657	571	124	11	4	567	41143595	41143033	1.100000e-68	270
7	TraesCS2D01G297000	chr2A	75.899	278	58	7	252	525	694817078	694817350	1.500000e-27	134
8	TraesCS2D01G297000	chr7D	92.271	414	32	0	996	1409	91699848	91699435	2.670000e-164	588
9	TraesCS2D01G297000	chr7D	77.305	564	110	17	25	579	606982431	606981877	1.390000e-82	316
10	TraesCS2D01G297000	chr7B	91.546	414	35	0	996	1409	63934975	63935388	2.690000e-159	571
11	TraesCS2D01G297000	chr7A	91.262	412	36	0	998	1409	93260966	93260555	1.620000e-156	562
12	TraesCS2D01G297000	chr6B	91.262	412	36	0	998	1409	58777811	58778222	1.620000e-156	562
13	TraesCS2D01G297000	chr6B	74.266	579	137	12	1	573	3857357	3857929	1.440000e-57	233
14	TraesCS2D01G297000	chr4D	91.106	416	36	1	998	1412	444177288	444177703	1.620000e-156	562
15	TraesCS2D01G297000	chr4D	72.396	576	150	8	8	579	35541732	35541162	8.860000e-40	174
16	TraesCS2D01G297000	chr6D	91.019	412	37	0	998	1409	29391939	29391528	7.530000e-155	556
17	TraesCS2D01G297000	chr4B	75.980	587	135	6	2	585	429716691	429716108	5.040000e-77	298
18	TraesCS2D01G297000	chr5B	78.554	401	78	8	4	401	96761635	96761240	8.550000e-65	257
19	TraesCS2D01G297000	chr3D	74.266	579	137	9	4	576	128448378	128447806	1.440000e-57	233
20	TraesCS2D01G297000	chr1D	73.322	581	144	11	1	576	420893733	420894307	1.130000e-48	204
21	TraesCS2D01G297000	chr1B	72.913	587	140	17	8	585	216518237	216517661	4.090000e-43	185

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G297000	chr2D	379855164	379857574	2410	False	4453	4453	100.000	1	2411	1	chr2D.!!$F1	2410
1	TraesCS2D01G297000	chr2B	451116991	451122400	5409	False	1341	2257	92.600	1	2411	2	chr2B.!!$F1	2410
2	TraesCS2D01G297000	chr2A	514857157	514858731	1574	False	1879	1879	88.763	590	2123	1	chr2A.!!$F1	1533
3	TraesCS2D01G297000	chr2A	41143033	41143595	562	True	270	270	75.657	4	567	1	chr2A.!!$R1	563
4	TraesCS2D01G297000	chr7D	606981877	606982431	554	True	316	316	77.305	25	579	1	chr7D.!!$R2	554
5	TraesCS2D01G297000	chr6B	3857357	3857929	572	False	233	233	74.266	1	573	1	chr6B.!!$F1	572
6	TraesCS2D01G297000	chr4B	429716108	429716691	583	True	298	298	75.980	2	585	1	chr4B.!!$R1	583
7	TraesCS2D01G297000	chr3D	128447806	128448378	572	True	233	233	74.266	4	576	1	chr3D.!!$R1	572
8	TraesCS2D01G297000	chr1D	420893733	420894307	574	False	204	204	73.322	1	576	1	chr1D.!!$F1	575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
628	632	1.000385	CCGTTGGGCCGTATTCGTATA	60.0	52.381	0.0	0.0	35.01	1.47	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1767	2054	0.17576	TACCGAACTGCAGCATCTCC	59.824	55.0	15.27	0.0	0.0	3.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
63	64	1.966451	CTTTGAGTGGCCCACGTCC	60.966	63.158	8.52	2.63	39.64	4.79
109	111	3.379057	CACAATTGCTCATCATGCACCTA	59.621	43.478	5.05	0.00	40.40	3.08
117	119	4.511527	CTCATCATGCACCTAAAGAGTGT	58.488	43.478	0.00	0.00	37.56	3.55
173	177	6.040842	CACCCCTTACTGAAAAATATGGATGG	59.959	42.308	0.00	0.00	0.00	3.51
317	321	2.547218	GGTTAACAACTGGAGCTGTCGA	60.547	50.000	8.10	0.00	0.00	4.20
346	350	1.864711	GCACTCTAACAAACGCTGACA	59.135	47.619	0.00	0.00	0.00	3.58
348	352	3.058914	GCACTCTAACAAACGCTGACAAT	60.059	43.478	0.00	0.00	0.00	2.71
370	374	7.614192	ACAATTGAGGAACGGATTTTAATAGGT	59.386	33.333	13.59	0.00	0.00	3.08
409	413	5.126061	GCTGCAATCAAGAAAAGATAAGGGA	59.874	40.000	0.00	0.00	0.00	4.20
423	427	5.736237	AGATAAGGGAAGATTGGATCTCCT	58.264	41.667	0.00	0.00	39.08	3.69
628	632	1.000385	CCGTTGGGCCGTATTCGTATA	60.000	52.381	0.00	0.00	35.01	1.47
748	755	2.923121	ACATCATCGCAGCCAATAAGT	58.077	42.857	0.00	0.00	0.00	2.24
937	949	1.978617	CCCACACAGCAATCCCACC	60.979	63.158	0.00	0.00	0.00	4.61
1189	1206	2.125391	GCACGGAGCTGCTGATCA	60.125	61.111	7.01	0.00	41.15	2.92
1263	1280	1.977544	CCTCCGGTTCCAGTCGTCT	60.978	63.158	0.00	0.00	0.00	4.18
1266	1283	2.651361	CGGTTCCAGTCGTCTGCT	59.349	61.111	3.97	0.00	40.09	4.24
1418	1435	0.103937	GAGAGGGCCTGATGAACGAG	59.896	60.000	12.95	0.00	0.00	4.18
1437	1456	2.083774	AGCTCTCTGTCTCTGTTCTCG	58.916	52.381	0.00	0.00	0.00	4.04
1442	1461	2.182030	GTCTCTGTTCTCGGCCGG	59.818	66.667	27.83	16.54	0.00	6.13
1444	1463	3.764466	CTCTGTTCTCGGCCGGCT	61.764	66.667	28.56	0.00	0.00	5.52
1461	1480	1.880027	GGCTTTGATGTTCTCGGTGTT	59.120	47.619	0.00	0.00	0.00	3.32
1492	1515	6.811665	GTGTTAGGATTTAGAAAATGTTGGGC	59.188	38.462	0.00	0.00	0.00	5.36
1508	1531	2.253452	GCTGTCGCCTGTTGCTTG	59.747	61.111	0.00	0.00	38.05	4.01
1520	1552	3.624861	CCTGTTGCTTGCTATCTTGTAGG	59.375	47.826	0.00	0.00	0.00	3.18
1553	1588	4.951715	CCTCTGGATTGTTCAATGGAATGA	59.048	41.667	2.63	0.00	35.05	2.57
1572	1607	6.073331	GGAATGATACTACTGCTTCATTGCTC	60.073	42.308	8.24	0.00	41.15	4.26
1578	1613	2.424557	ACTGCTTCATTGCTCTGTGAG	58.575	47.619	0.00	0.00	0.00	3.51
1591	1824	3.485877	GCTCTGTGAGTGTTTGTGTTCAC	60.486	47.826	0.00	0.00	40.17	3.18
1607	1840	2.873170	TCACTGCATTTCTTTACGCG	57.127	45.000	3.53	3.53	0.00	6.01
1608	1841	1.136085	TCACTGCATTTCTTTACGCGC	60.136	47.619	5.73	0.00	0.00	6.86
1613	1846	0.165079	CATTTCTTTACGCGCGTGGT	59.835	50.000	42.78	21.41	0.00	4.16
1657	1891	2.221169	TGAAAGCACTGTGATGTGGTC	58.779	47.619	12.86	2.45	46.25	4.02
1689	1930	3.059188	GTGTTTGTGTGTAATCGAGTGGG	60.059	47.826	0.00	0.00	0.00	4.61
1715	1956	2.029288	CAGTTGTCCGCACGAGCAT	61.029	57.895	5.50	0.00	42.27	3.79
1724	1965	2.138320	CCGCACGAGCATCAGAAATAT	58.862	47.619	5.50	0.00	42.27	1.28
1725	1966	2.545526	CCGCACGAGCATCAGAAATATT	59.454	45.455	5.50	0.00	42.27	1.28
1731	1972	6.021153	GCACGAGCATCAGAAATATTTTTCAC	60.021	38.462	10.67	0.00	41.19	3.18
1744	1985	8.586570	AAATATTTTTCACAACGAATGCTCAA	57.413	26.923	0.00	0.00	32.32	3.02
1746	1987	9.853555	AATATTTTTCACAACGAATGCTCAATA	57.146	25.926	0.00	0.00	32.32	1.90
1747	1988	9.853555	ATATTTTTCACAACGAATGCTCAATAA	57.146	25.926	0.00	0.00	32.32	1.40
1749	1990	7.621832	TTTTCACAACGAATGCTCAATAAAG	57.378	32.000	0.00	0.00	32.32	1.85
1753	1994	5.791974	CACAACGAATGCTCAATAAAGTCTG	59.208	40.000	0.00	0.00	0.00	3.51
1754	1995	5.700832	ACAACGAATGCTCAATAAAGTCTGA	59.299	36.000	0.00	0.00	0.00	3.27
1755	1996	6.204688	ACAACGAATGCTCAATAAAGTCTGAA	59.795	34.615	0.00	0.00	0.00	3.02
1767	2054	9.414295	TCAATAAAGTCTGAAAATCTTTGCATG	57.586	29.630	0.00	0.00	34.09	4.06
1772	2059	5.950549	AGTCTGAAAATCTTTGCATGGAGAT	59.049	36.000	0.00	0.00	34.19	2.75
1846	2158	5.698741	TTTTGAGCCATCTCTTCTATGGA	57.301	39.130	6.29	0.00	45.77	3.41
1847	2159	5.901413	TTTGAGCCATCTCTTCTATGGAT	57.099	39.130	6.29	0.00	45.55	3.41
1848	2160	5.901413	TTGAGCCATCTCTTCTATGGATT	57.099	39.130	6.29	0.00	43.01	3.01
1849	2161	5.224821	TGAGCCATCTCTTCTATGGATTG	57.775	43.478	6.29	0.00	43.01	2.67
1850	2162	4.041321	TGAGCCATCTCTTCTATGGATTGG	59.959	45.833	6.29	0.00	43.01	3.16
1856	2168	3.904339	TCTCTTCTATGGATTGGGCCTAC	59.096	47.826	4.53	0.00	0.00	3.18
1901	2213	2.966309	GCCTTTTCCGTGACAGCCG	61.966	63.158	0.00	0.00	0.00	5.52
1908	2220	0.250124	TCCGTGACAGCCGAACAATT	60.250	50.000	0.00	0.00	0.00	2.32
1911	2223	2.066262	CGTGACAGCCGAACAATTAGT	58.934	47.619	0.00	0.00	0.00	2.24
1963	2275	2.113139	CCCCAAACAGCAGACGGT	59.887	61.111	0.00	0.00	0.00	4.83
1980	2292	1.526917	GTGAGCATTCCGGGGATGG	60.527	63.158	17.06	0.00	0.00	3.51
2001	2313	3.535629	CTGTTCGCCCAGTGCTCCA	62.536	63.158	0.00	0.00	38.05	3.86
2041	2353	1.144936	CCTTGGTGGATCGAGCTCC	59.855	63.158	8.47	4.56	38.35	4.70
2061	2373	4.776322	CCCCGCATCGCAGGTCAA	62.776	66.667	0.00	0.00	0.00	3.18
2062	2374	2.514592	CCCGCATCGCAGGTCAAT	60.515	61.111	0.00	0.00	0.00	2.57
2063	2375	2.537560	CCCGCATCGCAGGTCAATC	61.538	63.158	0.00	0.00	0.00	2.67
2074	2386	0.394565	AGGTCAATCGCAGCCTATCC	59.605	55.000	0.00	0.00	0.00	2.59
2075	2387	0.603975	GGTCAATCGCAGCCTATCCC	60.604	60.000	0.00	0.00	0.00	3.85
2151	5319	8.090788	TGAGCCTAAATTTCTGGTAGATAGTT	57.909	34.615	0.00	0.00	0.00	2.24
2153	5321	8.966069	AGCCTAAATTTCTGGTAGATAGTTTC	57.034	34.615	0.00	0.00	0.00	2.78
2169	5337	8.749026	AGATAGTTTCAGATTCGGAAGTAGTA	57.251	34.615	0.00	0.00	0.00	1.82
2171	5339	6.837471	AGTTTCAGATTCGGAAGTAGTACT	57.163	37.500	0.00	0.00	0.00	2.73
2272	5440	3.034635	TCTAGACTGCTTCCCCTGATTC	58.965	50.000	0.00	0.00	0.00	2.52
2286	5454	4.563168	CCCCTGATTCTACTGAGATGCATC	60.563	50.000	19.37	19.37	0.00	3.91
2333	5515	5.324409	AGTGCCCTTTGATGAAGAACATAA	58.676	37.500	0.00	0.00	39.56	1.90
2387	5569	1.002315	AGGGCAATGCATTTTGGTGTC	59.998	47.619	9.83	0.00	0.00	3.67
2389	5571	2.492012	GGCAATGCATTTTGGTGTCAA	58.508	42.857	9.83	0.00	0.00	3.18
2390	5572	2.877168	GGCAATGCATTTTGGTGTCAAA	59.123	40.909	9.83	0.00	40.71	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
63	64	2.533266	AGGTATCTTGCATGCCTACG	57.467	50.000	16.68	0.53	32.22	3.51
123	127	6.203723	GCCCACAAACAGTTAGAGATGATATC	59.796	42.308	0.00	0.00	0.00	1.63
173	177	4.982295	GTCAAAGGGTAAACAATGACAAGC	59.018	41.667	0.00	0.00	37.65	4.01
283	287	6.042143	CAGTTGTTAACCATTTGCTCTTTGT	58.958	36.000	2.48	0.00	0.00	2.83
332	336	4.130857	TCCTCAATTGTCAGCGTTTGTTA	58.869	39.130	5.13	0.00	0.00	2.41
346	350	9.117183	GTACCTATTAAAATCCGTTCCTCAATT	57.883	33.333	0.00	0.00	0.00	2.32
348	352	6.757947	CGTACCTATTAAAATCCGTTCCTCAA	59.242	38.462	0.00	0.00	0.00	3.02
370	374	2.682494	AGCGGAGGGCCTTTCGTA	60.682	61.111	17.97	0.00	45.17	3.43
409	413	3.107601	TCCGACAAGGAGATCCAATCTT	58.892	45.455	0.92	0.00	45.98	2.40
423	427	1.688311	CCTACCAGAGGGATCCGACAA	60.688	57.143	5.45	0.00	42.39	3.18
662	667	3.456380	TTCTATTCTTTTGCAGGGCCT	57.544	42.857	0.00	0.00	0.00	5.19
796	804	3.774959	GATGCGATCCGACGGCAGT	62.775	63.158	9.66	0.00	0.00	4.40
937	949	2.025359	GAAGGTTCGAGAATGGCGCG	62.025	60.000	0.00	0.00	41.42	6.86
1189	1206	2.348998	CTGGAACGGCAGCTTCCT	59.651	61.111	13.25	0.00	38.46	3.36
1418	1435	1.132262	CCGAGAACAGAGACAGAGAGC	59.868	57.143	0.00	0.00	0.00	4.09
1437	1456	1.803289	GAGAACATCAAAGCCGGCC	59.197	57.895	26.15	5.07	0.00	6.13
1442	1461	2.290641	ACAACACCGAGAACATCAAAGC	59.709	45.455	0.00	0.00	0.00	3.51
1444	1463	2.542178	CGACAACACCGAGAACATCAAA	59.458	45.455	0.00	0.00	0.00	2.69
1461	1480	7.442969	ACATTTTCTAAATCCTAACACACGACA	59.557	33.333	0.00	0.00	0.00	4.35
1508	1531	3.654414	CGAACCATCCCTACAAGATAGC	58.346	50.000	0.00	0.00	0.00	2.97
1520	1552	0.181350	AATCCAGAGGCGAACCATCC	59.819	55.000	0.00	0.00	39.06	3.51
1553	1588	5.105187	TCACAGAGCAATGAAGCAGTAGTAT	60.105	40.000	0.00	0.00	36.85	2.12
1572	1607	3.728864	GCAGTGAACACAAACACTCACAG	60.729	47.826	7.68	0.00	44.07	3.66
1578	1613	4.423732	AGAAATGCAGTGAACACAAACAC	58.576	39.130	7.68	0.00	37.30	3.32
1591	1824	0.179225	ACGCGCGTAAAGAAATGCAG	60.179	50.000	37.08	0.00	0.00	4.41
1607	1840	5.235305	ACAAAATTCAGATGATACCACGC	57.765	39.130	0.00	0.00	0.00	5.34
1608	1841	7.076842	AGAACAAAATTCAGATGATACCACG	57.923	36.000	0.00	0.00	0.00	4.94
1665	1899	2.798283	ACTCGATTACACACAAACACCG	59.202	45.455	0.00	0.00	0.00	4.94
1675	1916	1.139058	AGATGCCCCACTCGATTACAC	59.861	52.381	0.00	0.00	0.00	2.90
1676	1917	1.496060	AGATGCCCCACTCGATTACA	58.504	50.000	0.00	0.00	0.00	2.41
1677	1918	2.158957	TGAAGATGCCCCACTCGATTAC	60.159	50.000	0.00	0.00	0.00	1.89
1678	1919	2.103094	CTGAAGATGCCCCACTCGATTA	59.897	50.000	0.00	0.00	0.00	1.75
1679	1920	0.911769	TGAAGATGCCCCACTCGATT	59.088	50.000	0.00	0.00	0.00	3.34
1680	1921	0.467384	CTGAAGATGCCCCACTCGAT	59.533	55.000	0.00	0.00	0.00	3.59
1681	1922	0.904865	ACTGAAGATGCCCCACTCGA	60.905	55.000	0.00	0.00	0.00	4.04
1689	1930	0.955428	TGCGGACAACTGAAGATGCC	60.955	55.000	0.00	0.00	0.00	4.40
1715	1956	8.081633	AGCATTCGTTGTGAAAAATATTTCTGA	58.918	29.630	0.10	0.00	44.32	3.27
1724	1965	7.704472	ACTTTATTGAGCATTCGTTGTGAAAAA	59.296	29.630	0.00	0.00	40.71	1.94
1725	1966	7.199766	ACTTTATTGAGCATTCGTTGTGAAAA	58.800	30.769	0.00	0.00	40.71	2.29
1731	1972	6.169419	TCAGACTTTATTGAGCATTCGTTG	57.831	37.500	0.00	0.00	0.00	4.10
1744	1985	8.125978	TCCATGCAAAGATTTTCAGACTTTAT	57.874	30.769	0.00	0.00	33.44	1.40
1746	1987	6.266103	TCTCCATGCAAAGATTTTCAGACTTT	59.734	34.615	0.00	0.00	34.77	2.66
1747	1988	5.771666	TCTCCATGCAAAGATTTTCAGACTT	59.228	36.000	0.00	0.00	0.00	3.01
1749	1990	5.633830	TCTCCATGCAAAGATTTTCAGAC	57.366	39.130	0.00	0.00	0.00	3.51
1767	2054	0.175760	TACCGAACTGCAGCATCTCC	59.824	55.000	15.27	0.00	0.00	3.71
1772	2059	0.320421	GGAACTACCGAACTGCAGCA	60.320	55.000	15.27	0.00	0.00	4.41
1827	2125	4.041321	CCAATCCATAGAAGAGATGGCTCA	59.959	45.833	0.00	0.00	43.17	4.26
1846	2158	1.710809	ACCAACAGAAGTAGGCCCAAT	59.289	47.619	0.00	0.00	0.00	3.16
1847	2159	1.145571	ACCAACAGAAGTAGGCCCAA	58.854	50.000	0.00	0.00	0.00	4.12
1848	2160	1.145571	AACCAACAGAAGTAGGCCCA	58.854	50.000	0.00	0.00	0.00	5.36
1849	2161	2.305052	ACTAACCAACAGAAGTAGGCCC	59.695	50.000	0.00	0.00	0.00	5.80
1850	2162	3.697619	ACTAACCAACAGAAGTAGGCC	57.302	47.619	0.00	0.00	0.00	5.19
1856	2168	2.737252	GCCGAGAACTAACCAACAGAAG	59.263	50.000	0.00	0.00	0.00	2.85
1901	2213	3.206964	GCCTAGGCCTGACTAATTGTTC	58.793	50.000	24.19	0.00	34.56	3.18
1925	2237	1.300620	CGAGTCGTGGGTGAGCAAA	60.301	57.895	3.82	0.00	0.00	3.68
1963	2275	2.918248	CCATCCCCGGAATGCTCA	59.082	61.111	0.73	0.00	0.00	4.26
1980	2292	3.426568	GCACTGGGCGAACAGAGC	61.427	66.667	12.86	12.32	45.15	4.09
2026	2338	1.330655	GGAAGGAGCTCGATCCACCA	61.331	60.000	24.18	0.00	42.26	4.17
2060	2372	1.668294	CGAGGGATAGGCTGCGATT	59.332	57.895	0.00	0.00	0.00	3.34
2061	2373	2.279069	CCGAGGGATAGGCTGCGAT	61.279	63.158	0.00	0.00	0.00	4.58
2062	2374	2.347691	TACCGAGGGATAGGCTGCGA	62.348	60.000	0.00	0.00	0.00	5.10
2063	2375	1.461091	TTACCGAGGGATAGGCTGCG	61.461	60.000	0.00	0.00	0.00	5.18
2074	2386	7.230913	TCTGAGTATAGAATTCCTTTACCGAGG	59.769	40.741	0.65	0.00	38.20	4.63
2075	2387	8.167605	TCTGAGTATAGAATTCCTTTACCGAG	57.832	38.462	0.65	1.92	32.02	4.63
2151	5319	4.438336	CGCAGTACTACTTCCGAATCTGAA	60.438	45.833	0.00	0.00	0.00	3.02
2153	5321	3.364062	CGCAGTACTACTTCCGAATCTG	58.636	50.000	0.00	0.00	0.00	2.90
2387	5569	5.783100	ATTTTGCGATGCCAACTATTTTG	57.217	34.783	0.00	0.00	0.00	2.44

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.