Multiple sequence alignment - TraesCS2D01G296600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G296600 chr2D 100.000 2264 0 0 1 2264 378910790 378908527 0.000000e+00 4181
1 TraesCS2D01G296600 chr2A 90.125 1357 58 32 965 2264 513853805 513852468 0.000000e+00 1694
2 TraesCS2D01G296600 chr2A 89.873 474 24 12 1 457 513854731 513854265 2.510000e-164 588
3 TraesCS2D01G296600 chr2A 90.252 318 15 11 588 897 513854239 513853930 3.500000e-108 401
4 TraesCS2D01G296600 chr2B 89.264 1332 72 25 965 2264 450258264 450256972 0.000000e+00 1602
5 TraesCS2D01G296600 chr2B 92.308 416 12 5 10 408 450259412 450259000 7.010000e-160 573
6 TraesCS2D01G296600 chr2B 91.875 320 6 6 588 897 450258699 450258390 1.610000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G296600 chr2D 378908527 378910790 2263 True 4181.000000 4181 100.000000 1 2264 1 chr2D.!!$R1 2263
1 TraesCS2D01G296600 chr2A 513852468 513854731 2263 True 894.333333 1694 90.083333 1 2264 3 chr2A.!!$R1 2263
2 TraesCS2D01G296600 chr2B 450256972 450259412 2440 True 868.000000 1602 91.149000 10 2264 3 chr2B.!!$R1 2254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 509 0.39086 GCTGATCCGACTATGCAGGT 59.609 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2372 0.041684 AGGCCAGGAAAAAGGATGGG 59.958 55.0 5.01 0.0 33.23 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.407989 CCATGAACCTTCTCTGCTCCC 60.408 57.143 0.00 0.00 0.00 4.30
176 186 1.216710 CTCTCCTCTCCAACACGCC 59.783 63.158 0.00 0.00 0.00 5.68
312 330 5.008911 TGAGCACATTCATTAATTCCCATCG 59.991 40.000 0.00 0.00 0.00 3.84
388 411 4.567558 CACGCACCAAAATATCCTAACGTA 59.432 41.667 0.00 0.00 0.00 3.57
391 414 7.117236 CACGCACCAAAATATCCTAACGTATAT 59.883 37.037 0.00 0.00 0.00 0.86
420 475 3.415212 TGAGTTCCTTGCAATCTTCCAG 58.585 45.455 0.00 0.00 0.00 3.86
450 508 0.678395 AGCTGATCCGACTATGCAGG 59.322 55.000 0.00 0.00 0.00 4.85
451 509 0.390860 GCTGATCCGACTATGCAGGT 59.609 55.000 0.00 0.00 0.00 4.00
482 542 1.266178 TTTCCTCTCATGACTCGGCA 58.734 50.000 0.00 0.00 0.00 5.69
500 677 5.240121 TCGGCATGATAGTCAGTATACGTA 58.760 41.667 0.00 0.00 0.00 3.57
540 717 7.085052 CACTCACAGTAGTGCTACATAGTTA 57.915 40.000 11.39 0.00 45.49 2.24
552 729 7.883217 GTGCTACATAGTTAGAGGCACTATTA 58.117 38.462 0.00 0.00 41.55 0.98
553 730 8.358148 GTGCTACATAGTTAGAGGCACTATTAA 58.642 37.037 0.00 0.00 41.55 1.40
554 731 8.920174 TGCTACATAGTTAGAGGCACTATTAAA 58.080 33.333 0.00 0.00 41.55 1.52
555 732 9.413048 GCTACATAGTTAGAGGCACTATTAAAG 57.587 37.037 0.00 0.00 41.55 1.85
556 733 9.413048 CTACATAGTTAGAGGCACTATTAAAGC 57.587 37.037 0.00 0.00 41.55 3.51
557 734 8.024145 ACATAGTTAGAGGCACTATTAAAGCT 57.976 34.615 0.00 0.00 41.55 3.74
558 735 8.487028 ACATAGTTAGAGGCACTATTAAAGCTT 58.513 33.333 0.00 0.00 41.55 3.74
559 736 9.331282 CATAGTTAGAGGCACTATTAAAGCTTT 57.669 33.333 17.30 17.30 41.55 3.51
560 737 9.907229 ATAGTTAGAGGCACTATTAAAGCTTTT 57.093 29.630 18.47 2.42 41.55 2.27
561 738 8.270080 AGTTAGAGGCACTATTAAAGCTTTTC 57.730 34.615 18.47 5.33 41.55 2.29
562 739 5.803020 AGAGGCACTATTAAAGCTTTTCG 57.197 39.130 18.47 6.13 41.55 3.46
563 740 4.095036 AGAGGCACTATTAAAGCTTTTCGC 59.905 41.667 18.47 10.65 41.55 4.70
564 741 3.128764 AGGCACTATTAAAGCTTTTCGCC 59.871 43.478 18.47 18.18 36.31 5.54
565 742 3.128764 GGCACTATTAAAGCTTTTCGCCT 59.871 43.478 18.47 0.00 40.39 5.52
566 743 4.380550 GGCACTATTAAAGCTTTTCGCCTT 60.381 41.667 18.47 0.00 40.39 4.35
567 744 4.793731 GCACTATTAAAGCTTTTCGCCTTC 59.206 41.667 18.47 0.00 40.39 3.46
568 745 5.392057 GCACTATTAAAGCTTTTCGCCTTCT 60.392 40.000 18.47 0.00 40.39 2.85
569 746 6.251549 CACTATTAAAGCTTTTCGCCTTCTC 58.748 40.000 18.47 0.00 40.39 2.87
570 747 5.938125 ACTATTAAAGCTTTTCGCCTTCTCA 59.062 36.000 18.47 0.00 40.39 3.27
571 748 5.904362 ATTAAAGCTTTTCGCCTTCTCAT 57.096 34.783 18.47 0.00 40.39 2.90
572 749 3.565905 AAAGCTTTTCGCCTTCTCATG 57.434 42.857 5.69 0.00 40.39 3.07
573 750 2.191128 AGCTTTTCGCCTTCTCATGT 57.809 45.000 0.00 0.00 40.39 3.21
574 751 2.079925 AGCTTTTCGCCTTCTCATGTC 58.920 47.619 0.00 0.00 40.39 3.06
575 752 1.806542 GCTTTTCGCCTTCTCATGTCA 59.193 47.619 0.00 0.00 0.00 3.58
576 753 2.413371 GCTTTTCGCCTTCTCATGTCAC 60.413 50.000 0.00 0.00 0.00 3.67
577 754 2.542020 TTTCGCCTTCTCATGTCACA 57.458 45.000 0.00 0.00 0.00 3.58
578 755 2.084610 TTCGCCTTCTCATGTCACAG 57.915 50.000 0.00 0.00 0.00 3.66
579 756 1.256812 TCGCCTTCTCATGTCACAGA 58.743 50.000 0.00 0.00 0.00 3.41
580 757 1.203287 TCGCCTTCTCATGTCACAGAG 59.797 52.381 0.00 0.00 0.00 3.35
583 760 3.678252 CGCCTTCTCATGTCACAGAGAAT 60.678 47.826 15.72 0.00 46.40 2.40
586 763 3.257469 TCTCATGTCACAGAGAATGCC 57.743 47.619 4.91 0.00 37.91 4.40
652 832 5.960113 AGTTATCATGTCAGAGACTCACAC 58.040 41.667 5.02 1.11 33.15 3.82
830 1023 8.577296 TCCTATATAAATTTGACGACTCCTCAG 58.423 37.037 0.00 0.00 0.00 3.35
831 1024 8.361139 CCTATATAAATTTGACGACTCCTCAGT 58.639 37.037 0.00 0.00 34.57 3.41
832 1025 9.400638 CTATATAAATTTGACGACTCCTCAGTC 57.599 37.037 0.00 0.00 45.19 3.51
833 1026 4.608948 AAATTTGACGACTCCTCAGTCT 57.391 40.909 0.00 0.00 46.31 3.24
836 1029 2.102070 TGACGACTCCTCAGTCTCTC 57.898 55.000 0.00 0.00 46.31 3.20
889 1082 2.366167 AGCATCGCCTCCCTCCTT 60.366 61.111 0.00 0.00 0.00 3.36
914 1117 2.559440 GCCATTTGCACTCACCAAAAA 58.441 42.857 0.00 0.00 40.77 1.94
919 1139 3.684103 TTGCACTCACCAAAAACTACG 57.316 42.857 0.00 0.00 0.00 3.51
936 1156 4.117685 ACTACGTCTTTCTCAAACCACAC 58.882 43.478 0.00 0.00 0.00 3.82
937 1157 2.285977 ACGTCTTTCTCAAACCACACC 58.714 47.619 0.00 0.00 0.00 4.16
938 1158 2.093128 ACGTCTTTCTCAAACCACACCT 60.093 45.455 0.00 0.00 0.00 4.00
943 1176 2.435372 TCTCAAACCACACCTTGCTT 57.565 45.000 0.00 0.00 0.00 3.91
959 1192 2.664851 TTGCGCCACCAACTCTCG 60.665 61.111 4.18 0.00 0.00 4.04
960 1193 3.158537 TTGCGCCACCAACTCTCGA 62.159 57.895 4.18 0.00 0.00 4.04
962 1195 2.432628 CGCCACCAACTCTCGACC 60.433 66.667 0.00 0.00 0.00 4.79
963 1196 2.741092 GCCACCAACTCTCGACCA 59.259 61.111 0.00 0.00 0.00 4.02
983 1233 4.812476 TTCCGTGCATCGCTCCGG 62.812 66.667 4.89 4.89 42.07 5.14
1006 1256 0.670162 CGTACGTACCTACATGGGGG 59.330 60.000 19.67 8.03 41.11 5.40
1007 1257 1.750332 CGTACGTACCTACATGGGGGA 60.750 57.143 19.67 0.76 41.11 4.81
1359 1618 7.732025 TGACATATGGTTGGTTAATCGTAGAT 58.268 34.615 7.80 0.00 45.12 1.98
1367 1626 9.268268 TGGTTGGTTAATCGTAGATGATTAATC 57.732 33.333 16.24 16.08 46.66 1.75
1441 1700 3.067833 GGAGAGGTTCCTTCGTTTCTTG 58.932 50.000 0.00 0.00 43.16 3.02
1639 1932 3.629855 TCGATTTGGTGTGAGCAGAAAAA 59.370 39.130 0.00 0.00 0.00 1.94
1651 1944 1.259609 CAGAAAAATGCAGGCCCTGA 58.740 50.000 16.85 0.00 32.44 3.86
1705 1998 4.884164 GCTGCACCTTCCTTTGACTATATT 59.116 41.667 0.00 0.00 0.00 1.28
1709 2006 8.677148 TGCACCTTCCTTTGACTATATTTATC 57.323 34.615 0.00 0.00 0.00 1.75
1711 2008 7.656137 GCACCTTCCTTTGACTATATTTATCGA 59.344 37.037 0.00 0.00 0.00 3.59
1823 2138 5.357878 TCCAAGATCATAAGATTGGTGCAAC 59.642 40.000 0.00 0.00 34.88 4.17
1842 2157 5.797934 TGCAACAGTTAAATATTTGCGCTAC 59.202 36.000 9.73 2.00 44.47 3.58
1843 2158 5.797934 GCAACAGTTAAATATTTGCGCTACA 59.202 36.000 9.73 0.00 33.80 2.74
1844 2159 6.021468 GCAACAGTTAAATATTTGCGCTACAG 60.021 38.462 9.73 1.84 33.80 2.74
1845 2160 6.978343 ACAGTTAAATATTTGCGCTACAGA 57.022 33.333 9.73 0.00 0.00 3.41
1846 2161 7.372451 ACAGTTAAATATTTGCGCTACAGAA 57.628 32.000 9.73 0.00 0.00 3.02
1848 2163 8.458843 ACAGTTAAATATTTGCGCTACAGAAAT 58.541 29.630 9.73 8.44 0.00 2.17
1849 2164 8.736742 CAGTTAAATATTTGCGCTACAGAAATG 58.263 33.333 9.73 0.10 0.00 2.32
1850 2165 7.915397 AGTTAAATATTTGCGCTACAGAAATGG 59.085 33.333 9.73 0.00 0.00 3.16
1851 2166 5.835113 AATATTTGCGCTACAGAAATGGT 57.165 34.783 9.73 0.00 0.00 3.55
1852 2167 5.835113 ATATTTGCGCTACAGAAATGGTT 57.165 34.783 9.73 0.00 0.00 3.67
1853 2168 6.935741 ATATTTGCGCTACAGAAATGGTTA 57.064 33.333 9.73 0.00 0.00 2.85
1854 2169 5.637006 ATTTGCGCTACAGAAATGGTTAA 57.363 34.783 9.73 0.00 0.00 2.01
1855 2170 5.637006 TTTGCGCTACAGAAATGGTTAAT 57.363 34.783 9.73 0.00 0.00 1.40
1856 2171 6.745159 TTTGCGCTACAGAAATGGTTAATA 57.255 33.333 9.73 0.00 0.00 0.98
1857 2172 5.728351 TGCGCTACAGAAATGGTTAATAC 57.272 39.130 9.73 0.00 0.00 1.89
1858 2173 4.269123 TGCGCTACAGAAATGGTTAATACG 59.731 41.667 9.73 0.00 0.00 3.06
1873 2188 0.930310 ATACGTGCATGTCATGTCGC 59.070 50.000 16.44 16.33 43.50 5.19
1980 2295 2.621055 CCCGTGACATTTGGTGAAAGAA 59.379 45.455 0.00 0.00 0.00 2.52
2057 2372 0.666274 TCGTGACATGACGCTTCCAC 60.666 55.000 0.00 0.00 39.27 4.02
2118 2438 3.853307 GCCTCCAAATCTTTGACGTGTTG 60.853 47.826 0.00 0.00 40.55 3.33
2204 2533 4.846779 TGATTGCTTCACCAAAGTTACC 57.153 40.909 0.00 0.00 37.31 2.85
2209 2538 2.492088 GCTTCACCAAAGTTACCCCATC 59.508 50.000 0.00 0.00 37.31 3.51
2244 2576 2.744709 GTTGGTACACGCGGGCAT 60.745 61.111 9.12 0.00 39.29 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.466555 CTCCTCCCCGAGTAGGTGAG 60.467 65.000 0.00 0.00 38.74 3.51
73 74 3.721035 CAAAAGAAAAGGACAAGGCAGG 58.279 45.455 0.00 0.00 0.00 4.85
194 204 2.268920 CATGGACGGTGTGGGGAG 59.731 66.667 0.00 0.00 0.00 4.30
195 205 2.528127 ACATGGACGGTGTGGGGA 60.528 61.111 0.00 0.00 0.00 4.81
312 330 1.301716 TTCGAGTTGGTGCAGAGGC 60.302 57.895 0.00 0.00 41.68 4.70
341 359 0.109689 GGTGCGCGCCTATAGTCTAG 60.110 60.000 32.27 0.00 0.00 2.43
388 411 9.236006 GATTGCAAGGAACTCATGGTTATATAT 57.764 33.333 4.94 0.00 38.49 0.86
391 414 6.662755 AGATTGCAAGGAACTCATGGTTATA 58.337 36.000 4.94 0.00 38.49 0.98
398 421 4.015084 CTGGAAGATTGCAAGGAACTCAT 58.985 43.478 4.94 0.00 32.24 2.90
420 475 3.799420 GTCGGATCAGCTAATTCACAGTC 59.201 47.826 0.00 0.00 0.00 3.51
479 539 8.758633 AATTTACGTATACTGACTATCATGCC 57.241 34.615 0.00 0.00 0.00 4.40
500 677 6.712095 ACTGTGAGTGTGTGACATGATAATTT 59.288 34.615 0.00 0.00 0.00 1.82
530 707 9.413048 GCTTTAATAGTGCCTCTAACTATGTAG 57.587 37.037 0.00 0.00 39.41 2.74
540 717 4.095036 GCGAAAAGCTTTAATAGTGCCTCT 59.905 41.667 13.10 0.00 44.04 3.69
556 733 2.807967 TGTGACATGAGAAGGCGAAAAG 59.192 45.455 0.00 0.00 0.00 2.27
557 734 2.807967 CTGTGACATGAGAAGGCGAAAA 59.192 45.455 0.00 0.00 0.00 2.29
558 735 2.037121 TCTGTGACATGAGAAGGCGAAA 59.963 45.455 0.00 0.00 0.00 3.46
559 736 1.618343 TCTGTGACATGAGAAGGCGAA 59.382 47.619 0.00 0.00 0.00 4.70
560 737 1.203287 CTCTGTGACATGAGAAGGCGA 59.797 52.381 0.00 0.00 32.44 5.54
561 738 1.203287 TCTCTGTGACATGAGAAGGCG 59.797 52.381 0.00 0.00 36.52 5.52
562 739 3.325293 TTCTCTGTGACATGAGAAGGC 57.675 47.619 17.49 0.00 42.30 4.35
566 743 2.836372 AGGCATTCTCTGTGACATGAGA 59.164 45.455 0.00 9.61 37.53 3.27
567 744 3.263489 AGGCATTCTCTGTGACATGAG 57.737 47.619 0.00 5.92 0.00 2.90
568 745 3.708403 AAGGCATTCTCTGTGACATGA 57.292 42.857 0.00 0.00 0.00 3.07
569 746 3.181513 CGAAAGGCATTCTCTGTGACATG 60.182 47.826 0.64 0.00 35.79 3.21
570 747 3.005554 CGAAAGGCATTCTCTGTGACAT 58.994 45.455 0.64 0.00 35.79 3.06
571 748 2.416747 CGAAAGGCATTCTCTGTGACA 58.583 47.619 0.64 0.00 35.79 3.58
572 749 1.129437 GCGAAAGGCATTCTCTGTGAC 59.871 52.381 0.64 0.00 42.87 3.67
573 750 1.442769 GCGAAAGGCATTCTCTGTGA 58.557 50.000 0.64 0.00 42.87 3.58
574 751 3.984292 GCGAAAGGCATTCTCTGTG 57.016 52.632 0.64 0.00 42.87 3.66
586 763 2.863137 GCTGAGTAATGAGAGGCGAAAG 59.137 50.000 0.00 0.00 0.00 2.62
652 832 7.225784 AGTGCCTCAGATTATGTATCACTAG 57.774 40.000 0.00 0.00 35.59 2.57
830 1023 2.505118 GTGCGCGTGGAGAGAGAC 60.505 66.667 8.43 0.00 0.00 3.36
831 1024 1.877576 AATGTGCGCGTGGAGAGAGA 61.878 55.000 8.43 0.00 0.00 3.10
832 1025 1.416813 GAATGTGCGCGTGGAGAGAG 61.417 60.000 8.43 0.00 0.00 3.20
833 1026 1.446099 GAATGTGCGCGTGGAGAGA 60.446 57.895 8.43 0.00 0.00 3.10
836 1029 1.416813 GAGAGAATGTGCGCGTGGAG 61.417 60.000 8.43 0.00 0.00 3.86
919 1139 3.489229 GCAAGGTGTGGTTTGAGAAAGAC 60.489 47.826 0.00 0.00 0.00 3.01
943 1176 3.611674 TCGAGAGTTGGTGGCGCA 61.612 61.111 10.83 0.00 0.00 6.09
963 1196 2.125512 GAGCGATGCACGGAAGGT 60.126 61.111 10.02 0.00 42.83 3.50
983 1233 1.002033 CCATGTAGGTACGTACGGAGC 60.002 57.143 21.89 21.89 0.00 4.70
984 1234 1.605710 CCCATGTAGGTACGTACGGAG 59.394 57.143 21.06 11.34 34.66 4.63
985 1235 1.679139 CCCATGTAGGTACGTACGGA 58.321 55.000 21.06 8.59 34.66 4.69
988 1238 2.071778 TCCCCCATGTAGGTACGTAC 57.928 55.000 17.56 17.56 34.66 3.67
1006 1256 2.747855 CCCCCTGCTGCTCGTTTC 60.748 66.667 0.00 0.00 0.00 2.78
1216 1472 2.665185 GACGGCGTTGTGCTTCCT 60.665 61.111 16.19 0.00 45.43 3.36
1367 1626 7.816031 CCCCCATACATTACATACTACGTAAAG 59.184 40.741 0.00 0.00 32.84 1.85
1441 1700 2.650778 CGGCTCCAAACCAAAGGC 59.349 61.111 0.00 0.00 0.00 4.35
1559 1847 0.179153 GAAAGAGGATTTGCAGCGGC 60.179 55.000 0.31 0.31 41.68 6.53
1598 1891 0.235665 ACGACGCAGCAAAGTCATTG 59.764 50.000 0.00 0.00 42.21 2.82
1639 1932 1.001641 GTCAACTCAGGGCCTGCAT 60.002 57.895 29.02 15.89 0.00 3.96
1651 1944 1.112315 TGGCCGCCATTTTGTCAACT 61.112 50.000 8.43 0.00 0.00 3.16
1681 1974 0.475906 AGTCAAAGGAAGGTGCAGCT 59.524 50.000 13.85 13.85 0.00 4.24
1683 1976 8.682936 ATAAATATAGTCAAAGGAAGGTGCAG 57.317 34.615 0.00 0.00 0.00 4.41
1741 2043 4.201851 GGAACAAGATGTACGTACTCGCTA 60.202 45.833 25.12 6.22 41.18 4.26
1810 2114 9.206870 CAAATATTTAACTGTTGCACCAATCTT 57.793 29.630 2.69 0.00 0.00 2.40
1811 2115 7.331687 GCAAATATTTAACTGTTGCACCAATCT 59.668 33.333 2.69 0.00 43.17 2.40
1823 2138 8.736742 CATTTCTGTAGCGCAAATATTTAACTG 58.263 33.333 11.47 0.00 0.00 3.16
1842 2157 5.879237 ACATGCACGTATTAACCATTTCTG 58.121 37.500 0.00 0.00 0.00 3.02
1843 2158 5.645929 TGACATGCACGTATTAACCATTTCT 59.354 36.000 0.00 0.00 0.00 2.52
1844 2159 5.874831 TGACATGCACGTATTAACCATTTC 58.125 37.500 0.00 0.00 0.00 2.17
1845 2160 5.888691 TGACATGCACGTATTAACCATTT 57.111 34.783 0.00 0.00 0.00 2.32
1846 2161 5.356751 ACATGACATGCACGTATTAACCATT 59.643 36.000 15.49 0.00 0.00 3.16
1848 2163 4.257731 ACATGACATGCACGTATTAACCA 58.742 39.130 15.49 0.00 0.00 3.67
1849 2164 4.550063 CGACATGACATGCACGTATTAACC 60.550 45.833 15.49 0.00 0.00 2.85
1850 2165 4.505300 CGACATGACATGCACGTATTAAC 58.495 43.478 15.49 0.00 0.00 2.01
1851 2166 3.000825 GCGACATGACATGCACGTATTAA 59.999 43.478 25.26 0.00 36.36 1.40
1852 2167 2.538037 GCGACATGACATGCACGTATTA 59.462 45.455 25.26 0.00 36.36 0.98
1853 2168 1.327460 GCGACATGACATGCACGTATT 59.673 47.619 25.26 5.18 36.36 1.89
1854 2169 0.930310 GCGACATGACATGCACGTAT 59.070 50.000 25.26 5.78 36.36 3.06
1855 2170 1.409982 CGCGACATGACATGCACGTA 61.410 55.000 25.26 0.00 36.36 3.57
1856 2171 2.729675 CGCGACATGACATGCACGT 61.730 57.895 25.26 6.71 36.36 4.49
1857 2172 2.020423 CGCGACATGACATGCACG 59.980 61.111 22.57 22.57 36.79 5.34
1858 2173 1.431488 ATCCGCGACATGACATGCAC 61.431 55.000 15.49 8.93 0.00 4.57
1873 2188 1.284982 CCTGCTTAATCCGCGATCCG 61.285 60.000 8.23 0.00 0.00 4.18
1980 2295 4.265073 CCGTCTTTCCATCCATCTTTCTT 58.735 43.478 0.00 0.00 0.00 2.52
2057 2372 0.041684 AGGCCAGGAAAAAGGATGGG 59.958 55.000 5.01 0.00 33.23 4.00
2209 2538 4.830600 ACCAACCAACCAAAGTACCATTAG 59.169 41.667 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.