Multiple sequence alignment - TraesCS2D01G296200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G296200 chr2D 100.000 2990 0 0 1 2990 378524321 378527310 0.000000e+00 5522.0
1 TraesCS2D01G296200 chr2B 93.116 2484 82 37 48 2462 449668865 449671328 0.000000e+00 3557.0
2 TraesCS2D01G296200 chr2B 95.238 147 5 2 2523 2668 449671352 449671497 6.450000e-57 231.0
3 TraesCS2D01G296200 chr2B 93.023 86 5 1 2779 2864 449671510 449671594 1.130000e-24 124.0
4 TraesCS2D01G296200 chr2A 92.419 1939 76 28 300 2194 513285675 513287586 0.000000e+00 2700.0
5 TraesCS2D01G296200 chr2A 93.174 586 26 4 2309 2884 513287650 513288231 0.000000e+00 848.0
6 TraesCS2D01G296200 chr2A 87.028 424 35 7 2577 2990 513291034 513291447 7.550000e-126 460.0
7 TraesCS2D01G296200 chr2A 94.416 197 7 3 48 242 513285265 513285459 1.740000e-77 300.0
8 TraesCS2D01G296200 chr5A 90.000 110 10 1 1315 1423 22485889 22485780 1.120000e-29 141.0
9 TraesCS2D01G296200 chr5B 90.476 105 10 0 1319 1423 25062069 25062173 4.020000e-29 139.0
10 TraesCS2D01G296200 chr5B 84.921 126 19 0 1379 1504 527290104 527290229 8.700000e-26 128.0
11 TraesCS2D01G296200 chr5D 87.719 114 11 3 1310 1423 34044915 34044805 2.420000e-26 130.0
12 TraesCS2D01G296200 chr5D 86.607 112 15 0 1199 1310 434540231 434540342 1.130000e-24 124.0
13 TraesCS2D01G296200 chr7A 79.464 112 20 3 2874 2984 9296372 9296263 3.200000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G296200 chr2D 378524321 378527310 2989 False 5522 5522 100.000000 1 2990 1 chr2D.!!$F1 2989
1 TraesCS2D01G296200 chr2B 449668865 449671594 2729 False 1304 3557 93.792333 48 2864 3 chr2B.!!$F1 2816
2 TraesCS2D01G296200 chr2A 513285265 513291447 6182 False 1077 2700 91.759250 48 2990 4 chr2A.!!$F1 2942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.253044 ATCCTTGCAGCCGTACATGT 59.747 50.0 2.69 2.69 0.0 3.21 F
41 42 0.391130 TCCTTGCAGCCGTACATGTC 60.391 55.0 0.00 0.00 0.0 3.06 F
343 539 0.529337 CACACGGGCAGCAGATAGAG 60.529 60.0 0.00 0.00 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2205 1.079750 GAGCTCCGCGAAGGTTCTT 60.080 57.895 8.23 0.0 41.99 2.52 R
1948 2206 1.608717 ATGAGCTCCGCGAAGGTTCT 61.609 55.000 8.23 0.0 41.99 3.01 R
2200 2487 0.383231 GCATTGCTTTCTCCATCCCG 59.617 55.000 0.16 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.032377 GATCCATGTTCCTCTTTACAAATCC 57.968 40.000 0.00 0.00 0.00 3.01
25 26 6.139679 TCCATGTTCCTCTTTACAAATCCT 57.860 37.500 0.00 0.00 0.00 3.24
26 27 6.552008 TCCATGTTCCTCTTTACAAATCCTT 58.448 36.000 0.00 0.00 0.00 3.36
27 28 6.434028 TCCATGTTCCTCTTTACAAATCCTTG 59.566 38.462 0.00 0.00 38.61 3.61
28 29 5.705609 TGTTCCTCTTTACAAATCCTTGC 57.294 39.130 0.00 0.00 35.84 4.01
29 30 5.136828 TGTTCCTCTTTACAAATCCTTGCA 58.863 37.500 0.00 0.00 35.84 4.08
30 31 5.241506 TGTTCCTCTTTACAAATCCTTGCAG 59.758 40.000 0.00 0.00 35.84 4.41
31 32 3.758554 TCCTCTTTACAAATCCTTGCAGC 59.241 43.478 0.00 0.00 35.84 5.25
32 33 3.119352 CCTCTTTACAAATCCTTGCAGCC 60.119 47.826 0.00 0.00 35.84 4.85
33 34 2.487762 TCTTTACAAATCCTTGCAGCCG 59.512 45.455 0.00 0.00 35.84 5.52
34 35 1.904287 TTACAAATCCTTGCAGCCGT 58.096 45.000 0.00 0.00 35.84 5.68
35 36 2.772077 TACAAATCCTTGCAGCCGTA 57.228 45.000 0.00 0.00 35.84 4.02
36 37 1.165270 ACAAATCCTTGCAGCCGTAC 58.835 50.000 0.00 0.00 35.84 3.67
37 38 1.164411 CAAATCCTTGCAGCCGTACA 58.836 50.000 0.00 0.00 0.00 2.90
38 39 1.745087 CAAATCCTTGCAGCCGTACAT 59.255 47.619 0.00 0.00 0.00 2.29
39 40 1.382522 AATCCTTGCAGCCGTACATG 58.617 50.000 0.00 0.00 0.00 3.21
40 41 0.253044 ATCCTTGCAGCCGTACATGT 59.747 50.000 2.69 2.69 0.00 3.21
41 42 0.391130 TCCTTGCAGCCGTACATGTC 60.391 55.000 0.00 0.00 0.00 3.06
42 43 1.695893 CCTTGCAGCCGTACATGTCG 61.696 60.000 0.00 6.16 0.00 4.35
44 45 2.890474 GCAGCCGTACATGTCGGG 60.890 66.667 26.93 19.70 46.90 5.14
45 46 2.890474 CAGCCGTACATGTCGGGC 60.890 66.667 26.93 26.10 46.90 6.13
46 47 4.157120 AGCCGTACATGTCGGGCC 62.157 66.667 27.46 16.52 46.90 5.80
119 120 5.271598 TGCCAGGAAATGTCTCCAAAATAT 58.728 37.500 0.00 0.00 38.02 1.28
120 121 6.430864 TGCCAGGAAATGTCTCCAAAATATA 58.569 36.000 0.00 0.00 38.02 0.86
259 452 1.257743 TTAGCCAGCTCGACAAGACT 58.742 50.000 0.00 0.00 0.00 3.24
328 524 1.935933 CTGTACGGATAAGGGCACAC 58.064 55.000 0.00 0.00 0.00 3.82
342 538 1.517361 CACACGGGCAGCAGATAGA 59.483 57.895 0.00 0.00 0.00 1.98
343 539 0.529337 CACACGGGCAGCAGATAGAG 60.529 60.000 0.00 0.00 0.00 2.43
366 562 2.117156 CGTCCGTCGGGGTAGACAT 61.117 63.158 12.29 0.00 40.98 3.06
584 812 4.859304 AAACGATCCATGCCGTACTATA 57.141 40.909 6.48 0.00 38.13 1.31
627 855 2.904866 TTCAACCCACGGCACAGC 60.905 61.111 0.00 0.00 0.00 4.40
628 856 3.705934 TTCAACCCACGGCACAGCA 62.706 57.895 0.00 0.00 0.00 4.41
718 953 4.730042 CGACATGGACGAAGCAAAATAATG 59.270 41.667 8.49 0.00 0.00 1.90
912 1161 4.318949 CCCCCGTTCCGTTCCGTT 62.319 66.667 0.00 0.00 0.00 4.44
913 1162 2.739671 CCCCGTTCCGTTCCGTTC 60.740 66.667 0.00 0.00 0.00 3.95
914 1163 2.739671 CCCGTTCCGTTCCGTTCC 60.740 66.667 0.00 0.00 0.00 3.62
1254 1512 3.056313 GCACGCCATCAAGAAGCCC 62.056 63.158 0.00 0.00 0.00 5.19
2034 2292 1.429423 CAGCGGCCGAAATTTCTCC 59.571 57.895 33.48 14.47 0.00 3.71
2035 2293 1.026718 CAGCGGCCGAAATTTCTCCT 61.027 55.000 33.48 10.21 0.00 3.69
2036 2294 0.322546 AGCGGCCGAAATTTCTCCTT 60.323 50.000 33.48 5.77 0.00 3.36
2037 2295 0.526211 GCGGCCGAAATTTCTCCTTT 59.474 50.000 33.48 0.00 0.00 3.11
2045 2310 6.073765 GGCCGAAATTTCTCCTTTTCTTTTTC 60.074 38.462 15.92 0.00 31.20 2.29
2200 2487 3.032667 GCGAGGAAAGGGGGAGGAC 62.033 68.421 0.00 0.00 0.00 3.85
2417 2723 5.482908 AGGTCATGCTGACTTTTGTACTAG 58.517 41.667 13.59 0.00 46.19 2.57
2418 2724 5.012148 AGGTCATGCTGACTTTTGTACTAGT 59.988 40.000 13.59 0.00 46.19 2.57
2419 2725 6.210784 AGGTCATGCTGACTTTTGTACTAGTA 59.789 38.462 13.59 0.00 46.19 1.82
2465 2771 0.463620 TGGCGATCCGATGTTCATCA 59.536 50.000 12.34 0.00 34.14 3.07
2485 2792 5.023533 TCAGGATGATAGGGAAGAAAACG 57.976 43.478 0.00 0.00 42.56 3.60
2516 2823 3.979495 GTGTGGTACGGATATAGAAAGCG 59.021 47.826 0.00 0.00 0.00 4.68
2634 2942 0.326264 GGATCTGCCTGTGGAGTGTT 59.674 55.000 0.00 0.00 0.00 3.32
2646 6073 2.943345 GAGTGTTCCACGCACGCTG 61.943 63.158 0.00 0.00 41.36 5.18
2668 6095 1.456923 CGTGTATCGCGATCATGCATT 59.543 47.619 27.45 1.59 39.94 3.56
2669 6096 2.719688 CGTGTATCGCGATCATGCATTG 60.720 50.000 27.45 12.62 39.94 2.82
2670 6097 1.195222 TGTATCGCGATCATGCATTGC 59.805 47.619 27.45 3.81 38.45 3.56
2671 6098 1.195222 GTATCGCGATCATGCATTGCA 59.805 47.619 27.45 14.72 41.66 4.08
2698 6125 1.328680 CCAATCGATTCCGTTGCTCAG 59.671 52.381 7.92 0.00 37.05 3.35
2699 6126 2.270923 CAATCGATTCCGTTGCTCAGA 58.729 47.619 7.92 0.00 37.05 3.27
2758 6194 0.679960 GCATACCCACCCCAACTGTC 60.680 60.000 0.00 0.00 0.00 3.51
2765 6201 2.032071 CCCCAACTGTCCGGTCAC 59.968 66.667 0.00 0.00 0.00 3.67
2776 6212 4.088762 CGGTCACGGTGCATGCAC 62.089 66.667 37.29 37.29 45.49 4.57
2795 6231 1.182667 CCCGGGAAATTCTTTGGGTC 58.817 55.000 18.48 0.00 31.82 4.46
2909 6345 1.070134 AGTAGGACACATGTGCGTTGT 59.930 47.619 25.68 5.61 41.53 3.32
2956 6392 9.520204 AATGAATTAAGCAAATGATTAAGGTCG 57.480 29.630 9.40 0.00 38.96 4.79
2958 6394 7.967854 TGAATTAAGCAAATGATTAAGGTCGTG 59.032 33.333 9.40 0.00 38.96 4.35
2967 6403 6.877611 ATGATTAAGGTCGTGTTCAAAGTT 57.122 33.333 0.00 0.00 0.00 2.66
2968 6404 6.055231 TGATTAAGGTCGTGTTCAAAGTTG 57.945 37.500 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.830838 AGGATTTGTAAAGAGGAACATGGATC 59.169 38.462 0.00 0.00 0.00 3.36
1 2 6.735556 AGGATTTGTAAAGAGGAACATGGAT 58.264 36.000 0.00 0.00 0.00 3.41
2 3 6.139679 AGGATTTGTAAAGAGGAACATGGA 57.860 37.500 0.00 0.00 0.00 3.41
3 4 6.624423 CAAGGATTTGTAAAGAGGAACATGG 58.376 40.000 0.00 0.00 0.00 3.66
4 5 6.095377 GCAAGGATTTGTAAAGAGGAACATG 58.905 40.000 0.00 0.00 36.65 3.21
5 6 5.774690 TGCAAGGATTTGTAAAGAGGAACAT 59.225 36.000 0.00 0.00 36.65 2.71
6 7 5.136828 TGCAAGGATTTGTAAAGAGGAACA 58.863 37.500 0.00 0.00 36.65 3.18
7 8 5.703876 CTGCAAGGATTTGTAAAGAGGAAC 58.296 41.667 0.00 0.00 36.65 3.62
8 9 4.218417 GCTGCAAGGATTTGTAAAGAGGAA 59.782 41.667 0.00 0.00 36.65 3.36
9 10 3.758554 GCTGCAAGGATTTGTAAAGAGGA 59.241 43.478 0.00 0.00 36.65 3.71
10 11 3.119352 GGCTGCAAGGATTTGTAAAGAGG 60.119 47.826 0.50 0.00 36.65 3.69
11 12 3.426695 CGGCTGCAAGGATTTGTAAAGAG 60.427 47.826 0.50 0.00 36.65 2.85
12 13 2.487762 CGGCTGCAAGGATTTGTAAAGA 59.512 45.455 0.50 0.00 36.65 2.52
13 14 2.228822 ACGGCTGCAAGGATTTGTAAAG 59.771 45.455 0.50 0.00 36.65 1.85
14 15 2.235016 ACGGCTGCAAGGATTTGTAAA 58.765 42.857 0.50 0.00 36.65 2.01
15 16 1.904287 ACGGCTGCAAGGATTTGTAA 58.096 45.000 0.50 0.00 36.65 2.41
16 17 2.289756 TGTACGGCTGCAAGGATTTGTA 60.290 45.455 0.50 0.00 36.65 2.41
17 18 1.165270 GTACGGCTGCAAGGATTTGT 58.835 50.000 0.50 0.00 36.65 2.83
18 19 1.164411 TGTACGGCTGCAAGGATTTG 58.836 50.000 0.50 0.00 37.36 2.32
19 20 1.745087 CATGTACGGCTGCAAGGATTT 59.255 47.619 0.50 0.00 0.00 2.17
20 21 1.340017 ACATGTACGGCTGCAAGGATT 60.340 47.619 0.00 0.00 0.00 3.01
21 22 0.253044 ACATGTACGGCTGCAAGGAT 59.747 50.000 0.00 0.00 0.00 3.24
22 23 0.391130 GACATGTACGGCTGCAAGGA 60.391 55.000 0.00 0.00 0.00 3.36
23 24 1.695893 CGACATGTACGGCTGCAAGG 61.696 60.000 0.00 0.00 0.00 3.61
24 25 1.695893 CCGACATGTACGGCTGCAAG 61.696 60.000 19.11 0.00 43.74 4.01
25 26 1.739929 CCGACATGTACGGCTGCAA 60.740 57.895 19.11 0.00 43.74 4.08
26 27 2.125713 CCGACATGTACGGCTGCA 60.126 61.111 19.11 0.00 43.74 4.41
32 33 2.202878 CTGGGCCCGACATGTACG 60.203 66.667 19.37 4.47 0.00 3.67
33 34 0.538118 TAACTGGGCCCGACATGTAC 59.462 55.000 19.37 0.00 0.00 2.90
34 35 0.538118 GTAACTGGGCCCGACATGTA 59.462 55.000 19.37 0.00 0.00 2.29
35 36 1.298667 GTAACTGGGCCCGACATGT 59.701 57.895 19.37 7.84 0.00 3.21
36 37 1.813753 CGTAACTGGGCCCGACATG 60.814 63.158 19.37 7.15 0.00 3.21
37 38 1.833787 AACGTAACTGGGCCCGACAT 61.834 55.000 19.37 5.80 0.00 3.06
38 39 1.184322 TAACGTAACTGGGCCCGACA 61.184 55.000 19.37 0.00 0.00 4.35
39 40 0.176449 ATAACGTAACTGGGCCCGAC 59.824 55.000 19.37 11.53 0.00 4.79
40 41 0.176219 CATAACGTAACTGGGCCCGA 59.824 55.000 19.37 5.42 0.00 5.14
41 42 0.812412 CCATAACGTAACTGGGCCCG 60.812 60.000 19.37 14.85 0.00 6.13
42 43 0.253894 ACCATAACGTAACTGGGCCC 59.746 55.000 17.59 17.59 34.21 5.80
43 44 1.375551 CACCATAACGTAACTGGGCC 58.624 55.000 13.59 0.00 34.21 5.80
44 45 0.730840 GCACCATAACGTAACTGGGC 59.269 55.000 13.59 10.50 34.21 5.36
45 46 1.375551 GGCACCATAACGTAACTGGG 58.624 55.000 13.59 3.65 34.21 4.45
120 121 5.990120 CCATTCTTGGAAATCTTGGAACT 57.010 39.130 0.00 0.00 46.92 3.01
142 143 3.831911 AGTGAGGCTAGGAGCAGATATTC 59.168 47.826 0.21 0.00 44.75 1.75
259 452 2.503765 TCTGCTCCCGAAATGGTTGATA 59.496 45.455 0.00 0.00 35.15 2.15
328 524 2.739784 CCCTCTATCTGCTGCCCG 59.260 66.667 0.00 0.00 0.00 6.13
481 707 4.739195 TCAGAAAAGGTTTTGTTTGTCCG 58.261 39.130 0.00 0.00 0.00 4.79
564 792 4.142227 GGATATAGTACGGCATGGATCGTT 60.142 45.833 0.00 0.00 40.31 3.85
565 793 3.380637 GGATATAGTACGGCATGGATCGT 59.619 47.826 0.00 0.00 42.55 3.73
584 812 3.321648 TGAGTGGCCGTGCAGGAT 61.322 61.111 8.24 0.00 45.00 3.24
701 936 5.273944 GTGATCCATTATTTTGCTTCGTCC 58.726 41.667 0.00 0.00 0.00 4.79
910 1159 4.329545 TCTGGCCTGTGCGGGAAC 62.330 66.667 3.32 0.00 38.85 3.62
911 1160 4.329545 GTCTGGCCTGTGCGGGAA 62.330 66.667 3.32 0.00 38.85 3.97
1542 1800 2.765807 ATGGTAGCCAGCCTCGCT 60.766 61.111 0.00 0.00 40.77 4.93
1833 2091 3.390521 CTAGTCCCACCGCTGCCA 61.391 66.667 0.00 0.00 0.00 4.92
1837 2095 2.663196 GTTGCTAGTCCCACCGCT 59.337 61.111 0.00 0.00 0.00 5.52
1842 2100 4.077184 CCGCCGTTGCTAGTCCCA 62.077 66.667 0.00 0.00 34.43 4.37
1863 2121 2.969821 AGGATTGTGGTTGCCTGTAA 57.030 45.000 0.00 0.00 0.00 2.41
1867 2125 3.182152 AGTAGTAGGATTGTGGTTGCCT 58.818 45.455 0.00 0.00 34.56 4.75
1947 2205 1.079750 GAGCTCCGCGAAGGTTCTT 60.080 57.895 8.23 0.00 41.99 2.52
1948 2206 1.608717 ATGAGCTCCGCGAAGGTTCT 61.609 55.000 8.23 0.00 41.99 3.01
2138 2403 7.067496 TGCCACAAGAATTAATAAAACCCAA 57.933 32.000 0.00 0.00 0.00 4.12
2200 2487 0.383231 GCATTGCTTTCTCCATCCCG 59.617 55.000 0.16 0.00 0.00 5.14
2368 2674 0.654683 GAACGCATCATCAGTGGAGC 59.345 55.000 0.00 0.00 0.00 4.70
2417 2723 6.939551 TTCTACAGTTGTCAAGCGTAATAC 57.060 37.500 0.00 0.00 0.00 1.89
2418 2724 9.642327 TTTATTCTACAGTTGTCAAGCGTAATA 57.358 29.630 0.00 0.00 0.00 0.98
2419 2725 8.542497 TTTATTCTACAGTTGTCAAGCGTAAT 57.458 30.769 0.00 0.00 0.00 1.89
2465 2771 3.456277 AGCGTTTTCTTCCCTATCATCCT 59.544 43.478 0.00 0.00 0.00 3.24
2485 2792 1.512156 CCGTACCACACCCAAACAGC 61.512 60.000 0.00 0.00 0.00 4.40
2646 6073 0.431233 GCATGATCGCGATACACGAC 59.569 55.000 23.76 9.02 43.23 4.34
2669 6096 2.737932 GAATCGATTGGGCGGCATGC 62.738 60.000 16.96 9.90 45.38 4.06
2670 6097 1.283793 GAATCGATTGGGCGGCATG 59.716 57.895 16.96 0.00 0.00 4.06
2671 6098 1.898574 GGAATCGATTGGGCGGCAT 60.899 57.895 16.96 0.00 0.00 4.40
2672 6099 2.515991 GGAATCGATTGGGCGGCA 60.516 61.111 16.96 0.00 0.00 5.69
2717 6144 4.788840 GCTCAAATCAAATGGAGCTCGATG 60.789 45.833 12.37 2.41 46.95 3.84
2718 6145 3.314635 GCTCAAATCAAATGGAGCTCGAT 59.685 43.478 7.83 6.51 46.95 3.59
2742 6169 2.218454 CGGACAGTTGGGGTGGGTA 61.218 63.158 0.00 0.00 0.00 3.69
2772 6208 0.965439 CAAAGAATTTCCCGGGTGCA 59.035 50.000 22.86 5.86 35.03 4.57
2773 6209 0.246360 CCAAAGAATTTCCCGGGTGC 59.754 55.000 22.86 0.00 35.03 5.01
2775 6211 0.485543 ACCCAAAGAATTTCCCGGGT 59.514 50.000 22.86 12.89 44.50 5.28
2776 6212 1.182667 GACCCAAAGAATTTCCCGGG 58.817 55.000 16.85 16.85 42.74 5.73
2777 6213 2.215942 AGACCCAAAGAATTTCCCGG 57.784 50.000 0.00 0.00 35.03 5.73
2778 6214 3.421844 AGAAGACCCAAAGAATTTCCCG 58.578 45.455 0.00 0.00 35.03 5.14
2779 6215 3.764434 GGAGAAGACCCAAAGAATTTCCC 59.236 47.826 0.00 0.00 35.03 3.97
2782 6218 5.066913 ACTGGAGAAGACCCAAAGAATTT 57.933 39.130 0.00 0.00 40.26 1.82
2795 6231 7.550906 CCTAGAACTAATCCAAAACTGGAGAAG 59.449 40.741 0.00 2.68 41.88 2.85
2879 6315 6.918569 GCACATGTGTCCTACTAGTTATACTG 59.081 42.308 26.01 0.00 0.00 2.74
2890 6326 1.508632 ACAACGCACATGTGTCCTAC 58.491 50.000 26.01 8.86 37.87 3.18
2894 6330 1.397945 CCGTAACAACGCACATGTGTC 60.398 52.381 26.01 17.03 37.87 3.67
2896 6332 0.584396 ACCGTAACAACGCACATGTG 59.416 50.000 21.83 21.83 0.00 3.21
2897 6333 0.863144 GACCGTAACAACGCACATGT 59.137 50.000 0.00 0.00 0.00 3.21
2898 6334 1.144969 AGACCGTAACAACGCACATG 58.855 50.000 0.00 0.00 0.00 3.21
2899 6335 2.288334 TGTAGACCGTAACAACGCACAT 60.288 45.455 0.00 0.00 0.00 3.21
2900 6336 1.066757 TGTAGACCGTAACAACGCACA 59.933 47.619 0.00 0.00 0.00 4.57
2948 6384 5.448089 GCTTCAACTTTGAACACGACCTTAA 60.448 40.000 0.07 0.00 41.88 1.85
2956 6392 6.268566 AGAAATGAGCTTCAACTTTGAACAC 58.731 36.000 0.07 0.00 41.88 3.32
2958 6394 5.917447 GGAGAAATGAGCTTCAACTTTGAAC 59.083 40.000 0.07 0.00 41.88 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.