Multiple sequence alignment - TraesCS2D01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G296000 chr2D 100.000 6635 0 0 1 6635 378165282 378171916 0.000000e+00 12253
1 TraesCS2D01G296000 chr2D 97.409 1698 43 1 2388 4084 528456467 528458164 0.000000e+00 2891
2 TraesCS2D01G296000 chr2D 98.065 1550 28 2 4080 5627 528466820 528468369 0.000000e+00 2695
3 TraesCS2D01G296000 chr2D 96.875 992 24 3 1424 2409 528446841 528447831 0.000000e+00 1653
4 TraesCS2D01G296000 chr2D 86.462 325 39 4 112 433 572039702 572039380 1.060000e-92 351
5 TraesCS2D01G296000 chr2D 83.706 313 41 7 127 434 529000828 529000521 3.030000e-73 287
6 TraesCS2D01G296000 chr6B 82.070 4010 680 31 1598 5587 673675262 673671272 0.000000e+00 3386
7 TraesCS2D01G296000 chr6B 83.587 329 42 10 112 432 146669886 146669562 1.400000e-76 298
8 TraesCS2D01G296000 chr5B 81.924 4044 688 33 1598 5625 471016619 471020635 0.000000e+00 3378
9 TraesCS2D01G296000 chr7D 81.944 4054 667 57 1598 5625 77045725 77041711 0.000000e+00 3371
10 TraesCS2D01G296000 chr7D 90.807 1338 83 14 112 1426 175442705 175444025 0.000000e+00 1753
11 TraesCS2D01G296000 chr7D 83.129 326 44 8 112 432 156176416 156176097 3.030000e-73 287
12 TraesCS2D01G296000 chr7D 92.746 193 12 1 5627 5819 175444022 175444212 1.820000e-70 278
13 TraesCS2D01G296000 chr7D 95.614 114 5 0 2 115 45529497 45529610 4.090000e-42 183
14 TraesCS2D01G296000 chr7D 96.396 111 4 0 2 112 133720000 133719890 4.090000e-42 183
15 TraesCS2D01G296000 chr3D 81.395 4042 705 39 1609 5625 565002993 565007012 0.000000e+00 3254
16 TraesCS2D01G296000 chr3D 87.356 348 36 5 505 845 555912913 555912567 6.240000e-105 392
17 TraesCS2D01G296000 chr3D 80.483 497 87 7 939 1429 555912565 555912073 8.130000e-99 372
18 TraesCS2D01G296000 chr2B 95.670 1201 45 3 1426 2620 23981042 23982241 0.000000e+00 1923
19 TraesCS2D01G296000 chr2B 73.427 572 106 28 6007 6560 631132699 631132156 8.850000e-39 172
20 TraesCS2D01G296000 chr2A 89.028 1194 87 23 267 1426 512441582 512442765 0.000000e+00 1439
21 TraesCS2D01G296000 chr2A 80.547 622 120 1 6007 6627 512568473 512569094 1.670000e-130 477
22 TraesCS2D01G296000 chr2A 80.386 622 121 1 6007 6627 512580434 512581055 7.790000e-129 472
23 TraesCS2D01G296000 chr2A 92.593 216 14 1 5627 5840 512442762 512442977 6.460000e-80 309
24 TraesCS2D01G296000 chr2A 74.476 572 99 28 6007 6560 675818554 675818012 3.140000e-48 204
25 TraesCS2D01G296000 chr3B 80.769 494 85 7 939 1429 738910767 738910281 1.750000e-100 377
26 TraesCS2D01G296000 chr3B 86.905 336 37 4 515 845 738911102 738910769 2.920000e-98 370
27 TraesCS2D01G296000 chr3B 80.081 492 86 9 949 1435 738992857 738992373 8.180000e-94 355
28 TraesCS2D01G296000 chr3B 85.106 329 37 9 112 431 794589795 794589470 6.420000e-85 326
29 TraesCS2D01G296000 chr3B 96.396 111 4 0 2 112 512065925 512066035 4.090000e-42 183
30 TraesCS2D01G296000 chr3A 86.207 348 36 6 509 845 692945632 692945286 3.780000e-97 366
31 TraesCS2D01G296000 chr3A 83.853 353 38 11 506 840 692724251 692723900 1.070000e-82 318
32 TraesCS2D01G296000 chr3A 89.781 137 10 4 2 134 216580921 216580785 8.850000e-39 172
33 TraesCS2D01G296000 chrUn 82.262 389 67 2 4663 5050 480374140 480373753 1.070000e-87 335
34 TraesCS2D01G296000 chr1A 79.872 467 84 8 939 1401 510457159 510457619 3.830000e-87 333
35 TraesCS2D01G296000 chr1A 89.005 191 18 2 657 845 510456968 510457157 4.000000e-57 233
36 TraesCS2D01G296000 chr4A 85.061 328 38 8 112 432 63800181 63799858 2.310000e-84 324
37 TraesCS2D01G296000 chr1D 84.923 325 38 7 115 431 67387501 67387180 1.070000e-82 318
38 TraesCS2D01G296000 chr1D 96.396 111 4 0 2 112 241714751 241714861 4.090000e-42 183
39 TraesCS2D01G296000 chr1D 95.575 113 5 0 2 114 131375905 131376017 1.470000e-41 182
40 TraesCS2D01G296000 chr7B 92.386 197 8 3 5627 5819 140815924 140816117 2.360000e-69 274
41 TraesCS2D01G296000 chr7B 94.118 119 7 0 2 120 662336603 662336485 1.470000e-41 182
42 TraesCS2D01G296000 chr7B 93.162 117 8 0 1310 1426 140815811 140815927 8.850000e-39 172
43 TraesCS2D01G296000 chr6D 94.068 118 7 0 2 119 138982071 138981954 5.290000e-41 180
44 TraesCS2D01G296000 chr4D 94.068 118 6 1 2 118 82815318 82815201 1.900000e-40 178
45 TraesCS2D01G296000 chr6A 95.349 86 4 0 978 1063 14073642 14073727 3.230000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G296000 chr2D 378165282 378171916 6634 False 12253.0 12253 100.0000 1 6635 1 chr2D.!!$F1 6634
1 TraesCS2D01G296000 chr2D 528456467 528458164 1697 False 2891.0 2891 97.4090 2388 4084 1 chr2D.!!$F3 1696
2 TraesCS2D01G296000 chr2D 528466820 528468369 1549 False 2695.0 2695 98.0650 4080 5627 1 chr2D.!!$F4 1547
3 TraesCS2D01G296000 chr2D 528446841 528447831 990 False 1653.0 1653 96.8750 1424 2409 1 chr2D.!!$F2 985
4 TraesCS2D01G296000 chr6B 673671272 673675262 3990 True 3386.0 3386 82.0700 1598 5587 1 chr6B.!!$R2 3989
5 TraesCS2D01G296000 chr5B 471016619 471020635 4016 False 3378.0 3378 81.9240 1598 5625 1 chr5B.!!$F1 4027
6 TraesCS2D01G296000 chr7D 77041711 77045725 4014 True 3371.0 3371 81.9440 1598 5625 1 chr7D.!!$R1 4027
7 TraesCS2D01G296000 chr7D 175442705 175444212 1507 False 1015.5 1753 91.7765 112 5819 2 chr7D.!!$F2 5707
8 TraesCS2D01G296000 chr3D 565002993 565007012 4019 False 3254.0 3254 81.3950 1609 5625 1 chr3D.!!$F1 4016
9 TraesCS2D01G296000 chr3D 555912073 555912913 840 True 382.0 392 83.9195 505 1429 2 chr3D.!!$R1 924
10 TraesCS2D01G296000 chr2B 23981042 23982241 1199 False 1923.0 1923 95.6700 1426 2620 1 chr2B.!!$F1 1194
11 TraesCS2D01G296000 chr2A 512441582 512442977 1395 False 874.0 1439 90.8105 267 5840 2 chr2A.!!$F3 5573
12 TraesCS2D01G296000 chr2A 512568473 512569094 621 False 477.0 477 80.5470 6007 6627 1 chr2A.!!$F1 620
13 TraesCS2D01G296000 chr2A 512580434 512581055 621 False 472.0 472 80.3860 6007 6627 1 chr2A.!!$F2 620
14 TraesCS2D01G296000 chr2A 675818012 675818554 542 True 204.0 204 74.4760 6007 6560 1 chr2A.!!$R1 553
15 TraesCS2D01G296000 chr3B 738910281 738911102 821 True 373.5 377 83.8370 515 1429 2 chr3B.!!$R3 914
16 TraesCS2D01G296000 chr1A 510456968 510457619 651 False 283.0 333 84.4385 657 1401 2 chr1A.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.035739 GGGAGCGTTTGGTTAGTGGA 59.964 55.000 0.00 0.00 0.00 4.02 F
1089 1147 0.175760 TCGTCATGGCTAACTGCTCC 59.824 55.000 0.00 0.00 42.39 4.70 F
1346 1413 0.750850 CATTCCCGTGGTCGACCTAT 59.249 55.000 33.39 14.70 39.71 2.57 F
1739 1807 1.605992 CTTCCAGAGATGCCAGGCA 59.394 57.895 18.99 18.99 44.86 4.75 F
3067 3142 1.005037 AACAAGGCTGCGTCATCGA 60.005 52.632 0.00 0.00 39.71 3.59 F
3420 3495 0.727398 GAGAATTTTCGGAGTGGGCG 59.273 55.000 0.00 0.00 0.00 6.13 F
3985 4060 0.187117 TTGTTCCCCATTGAGCACCA 59.813 50.000 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1401 0.108138 AGCAGCAATAGGTCGACCAC 60.108 55.000 35.00 18.43 38.89 4.16 R
2880 2955 0.563173 TTGGTGGGATTTTGGGGTCA 59.437 50.000 0.00 0.00 0.00 4.02 R
3067 3142 2.484264 GCTTGCGTTCTGGTTTCTATGT 59.516 45.455 0.00 0.00 0.00 2.29 R
3357 3432 0.602562 TGGCCAAGGCTTTTGATTCG 59.397 50.000 0.61 0.00 41.60 3.34 R
3934 4009 1.064463 TGATCATGAAGGGAAGGCCAC 60.064 52.381 5.01 0.00 35.15 5.01 R
5246 5324 0.176449 TGCGATGTGGAGACTGATGG 59.824 55.000 0.00 0.00 0.00 3.51 R
5964 6058 0.398318 GGGGATCGGCTAGAATTGCT 59.602 55.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 2.364324 GACGTATCAATCTACAGGGCCA 59.636 50.000 6.18 0.00 0.00 5.36
124 125 2.769663 ACGTATCAATCTACAGGGCCAA 59.230 45.455 6.18 0.00 0.00 4.52
146 147 0.790207 CTTGGATTCGTGTGTGGTCG 59.210 55.000 0.00 0.00 0.00 4.79
159 160 3.827876 TGTGTGGTCGTTACTCATTCCTA 59.172 43.478 0.00 0.00 0.00 2.94
175 176 1.070445 CTATGGAAGCCAGGGAGCG 59.930 63.158 0.00 0.00 36.75 5.03
184 185 1.305930 GCCAGGGAGCGTTTGGTTAG 61.306 60.000 0.00 0.00 34.43 2.34
188 189 0.035739 GGGAGCGTTTGGTTAGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
195 196 2.092323 GTTTGGTTAGTGGATCTGCCC 58.908 52.381 0.00 0.00 34.97 5.36
198 199 0.179081 GGTTAGTGGATCTGCCCGAC 60.179 60.000 0.00 0.00 34.97 4.79
229 230 1.887198 AGCTCGGGATATCTACAACCG 59.113 52.381 10.16 10.16 45.52 4.44
258 259 3.786553 TGGCGGTCCAGTAATAGGATAT 58.213 45.455 0.00 0.00 37.47 1.63
262 263 4.021368 GCGGTCCAGTAATAGGATATGTGT 60.021 45.833 0.00 0.00 37.52 3.72
286 287 9.226606 TGTTTAATCATCTCGTTCTATTTTGGT 57.773 29.630 0.00 0.00 0.00 3.67
295 296 3.364565 CGTTCTATTTTGGTCGGTTGTGG 60.365 47.826 0.00 0.00 0.00 4.17
305 306 3.075884 GGTCGGTTGTGGCACTTTATAA 58.924 45.455 19.83 0.72 0.00 0.98
308 313 5.336134 GGTCGGTTGTGGCACTTTATAATTT 60.336 40.000 19.83 0.00 0.00 1.82
415 424 2.421739 CAGAGGCCGGGGTAATCG 59.578 66.667 2.18 0.00 0.00 3.34
540 573 2.755650 CTATCCACACTATCCGGCAAC 58.244 52.381 0.00 0.00 0.00 4.17
558 591 5.583495 GGCAACCATATATCTCGTAGCTAG 58.417 45.833 0.00 0.00 0.00 3.42
628 661 1.394917 CGTACATGTCTTTGCAGCCTC 59.605 52.381 0.00 0.00 0.00 4.70
689 730 8.851960 TGAGAAATGATGTACGTAAGACATAC 57.148 34.615 0.00 2.50 37.92 2.39
845 891 7.730332 TGAACACCTAGACTATACATGGATCAT 59.270 37.037 0.00 0.00 0.00 2.45
869 915 4.345854 ACAAAACGATAATAGCCCCCAAA 58.654 39.130 0.00 0.00 0.00 3.28
870 916 4.959839 ACAAAACGATAATAGCCCCCAAAT 59.040 37.500 0.00 0.00 0.00 2.32
894 940 5.105513 TGACAAGGCTATGTTGACGATTCTA 60.106 40.000 0.00 0.00 32.57 2.10
900 946 7.697691 AGGCTATGTTGACGATTCTATTTTTG 58.302 34.615 0.00 0.00 0.00 2.44
1042 1100 6.926272 GTGGACGATGAAGAAGAGCTTATTAT 59.074 38.462 0.00 0.00 36.83 1.28
1073 1131 5.105756 TGAGTGTGTATCTGTTGATCATCGT 60.106 40.000 0.00 0.00 34.32 3.73
1089 1147 0.175760 TCGTCATGGCTAACTGCTCC 59.824 55.000 0.00 0.00 42.39 4.70
1144 1202 9.651913 ACCCTCGTACGTAATTATTTCTTTTAA 57.348 29.630 16.05 0.00 0.00 1.52
1282 1349 4.332637 CAAGCACGGCACCTGCAC 62.333 66.667 11.84 0.00 44.36 4.57
1334 1401 4.169696 TACTGCGCCCCATTCCCG 62.170 66.667 4.18 0.00 0.00 5.14
1346 1413 0.750850 CATTCCCGTGGTCGACCTAT 59.249 55.000 33.39 14.70 39.71 2.57
1416 1483 5.942872 GCAGCTTTATATGCGGTGATAATT 58.057 37.500 0.00 0.00 35.28 1.40
1417 1484 7.072177 GCAGCTTTATATGCGGTGATAATTA 57.928 36.000 0.00 0.00 35.28 1.40
1491 1558 5.350640 GTGAGGGGAGAAAATACAAAGTACG 59.649 44.000 0.00 0.00 0.00 3.67
1530 1597 1.946283 GCTAGAAACCTCCCACACAGC 60.946 57.143 0.00 0.00 0.00 4.40
1565 1632 4.765339 GGCTAAAACTCTGTTACAACCCAT 59.235 41.667 0.00 0.00 0.00 4.00
1739 1807 1.605992 CTTCCAGAGATGCCAGGCA 59.394 57.895 18.99 18.99 44.86 4.75
1779 1847 3.939740 AATCAGCCTCAATCCTAGCAA 57.060 42.857 0.00 0.00 0.00 3.91
2017 2086 3.854784 GCAGTCCAATTTCTGTTCTGCAC 60.855 47.826 8.95 0.00 43.37 4.57
2745 2819 5.343860 CGTAACGACAGAATTGATGTACACA 59.656 40.000 0.00 0.00 0.00 3.72
2880 2955 2.704065 CCCTAGGTATTGACACGGGAAT 59.296 50.000 8.29 0.00 32.41 3.01
3067 3142 1.005037 AACAAGGCTGCGTCATCGA 60.005 52.632 0.00 0.00 39.71 3.59
3077 3152 2.535984 CTGCGTCATCGACATAGAAACC 59.464 50.000 0.00 0.00 39.71 3.27
3357 3432 2.524569 GCAGATAGCTCCAAGAGACC 57.475 55.000 0.00 0.00 41.15 3.85
3420 3495 0.727398 GAGAATTTTCGGAGTGGGCG 59.273 55.000 0.00 0.00 0.00 6.13
3596 3671 6.235231 ACTAATAGGACGGAAATCACATGT 57.765 37.500 0.00 0.00 0.00 3.21
3638 3713 3.575805 TGGGAAGAAGAGCCAAATTTGT 58.424 40.909 16.73 0.00 0.00 2.83
3639 3714 3.966665 TGGGAAGAAGAGCCAAATTTGTT 59.033 39.130 16.73 4.56 0.00 2.83
3812 3887 1.680338 GCATCCCGTAATTCCTGCTT 58.320 50.000 0.00 0.00 0.00 3.91
3888 3963 1.822186 GTTCAGGGTGGTTGTGCGT 60.822 57.895 0.00 0.00 0.00 5.24
3934 4009 2.683968 TGAAACGGTCCAGAAGAATCG 58.316 47.619 0.00 0.00 0.00 3.34
3985 4060 0.187117 TTGTTCCCCATTGAGCACCA 59.813 50.000 0.00 0.00 0.00 4.17
4008 4083 0.305313 TATGATTTTTACGGCGCCGC 59.695 50.000 46.22 28.80 44.19 6.53
4228 4304 9.643693 CTTCATTTGCTATACCAGAAACAAAAT 57.356 29.630 0.00 0.00 31.52 1.82
4425 4502 7.414984 GCCCTATAATGAGATAGCTGCATTTTC 60.415 40.741 1.02 0.00 34.41 2.29
4718 4795 1.523154 CCCAACACCATCCAACGTGG 61.523 60.000 0.00 0.00 42.55 4.94
4823 4900 3.136123 CCAGCAGTTGCCATCCGG 61.136 66.667 0.00 0.00 43.38 5.14
4848 4925 3.517901 TGTCCCTGATCGTACCTGAAATT 59.482 43.478 0.00 0.00 0.00 1.82
4858 4935 5.245531 TCGTACCTGAAATTGAATGAGCTT 58.754 37.500 0.00 0.00 0.00 3.74
4923 5000 0.839946 CAATGAGAATCCCTCCCCGT 59.160 55.000 0.00 0.00 41.25 5.28
5068 5145 3.603532 TCAGCCACAAAAATTTGCACAA 58.396 36.364 5.82 0.00 41.79 3.33
5102 5179 1.001393 GATTGTTCAGGCCCCGGAA 60.001 57.895 0.73 0.00 0.00 4.30
5246 5324 2.073816 CCACACTCATAACCGAACACC 58.926 52.381 0.00 0.00 0.00 4.16
5277 5355 1.923204 CACATCGCAGCACTCTACTTC 59.077 52.381 0.00 0.00 0.00 3.01
5403 5492 1.869767 CACTTGAACGCTCTTCTTGCT 59.130 47.619 0.00 0.00 0.00 3.91
5462 5551 3.189568 ACAAACTTGTCAGGCAGCA 57.810 47.368 0.00 0.00 36.50 4.41
5628 5718 4.827087 CTGCCGCTGCTCCGTCAT 62.827 66.667 0.70 0.00 38.71 3.06
5629 5719 4.393155 TGCCGCTGCTCCGTCATT 62.393 61.111 0.70 0.00 38.71 2.57
5630 5720 2.202878 GCCGCTGCTCCGTCATTA 60.203 61.111 0.00 0.00 33.53 1.90
5631 5721 1.595382 GCCGCTGCTCCGTCATTAT 60.595 57.895 0.00 0.00 33.53 1.28
5632 5722 1.160329 GCCGCTGCTCCGTCATTATT 61.160 55.000 0.00 0.00 33.53 1.40
5633 5723 1.872237 GCCGCTGCTCCGTCATTATTA 60.872 52.381 0.00 0.00 33.53 0.98
5634 5724 2.479837 CCGCTGCTCCGTCATTATTAA 58.520 47.619 0.00 0.00 0.00 1.40
5635 5725 2.221055 CCGCTGCTCCGTCATTATTAAC 59.779 50.000 0.00 0.00 0.00 2.01
5636 5726 3.123804 CGCTGCTCCGTCATTATTAACT 58.876 45.455 0.00 0.00 0.00 2.24
5637 5727 4.295870 CGCTGCTCCGTCATTATTAACTA 58.704 43.478 0.00 0.00 0.00 2.24
5698 5790 7.951347 AGTGAAATAAATCTCATTTCCAGCT 57.049 32.000 5.59 0.00 40.25 4.24
5737 5831 5.927819 TGTAGAAGGGAAAAAGAACCGTTA 58.072 37.500 0.00 0.00 34.98 3.18
5772 5866 4.336713 GGGAACTGCTATTTCTCATTGACC 59.663 45.833 0.00 0.00 0.00 4.02
5840 5934 6.240549 AGTGGATAAGATTAACCAGTCCTG 57.759 41.667 2.13 0.00 35.15 3.86
5841 5935 4.816925 GTGGATAAGATTAACCAGTCCTGC 59.183 45.833 2.13 0.00 36.44 4.85
5842 5936 4.473196 TGGATAAGATTAACCAGTCCTGCA 59.527 41.667 0.00 0.00 31.57 4.41
5843 5937 4.816925 GGATAAGATTAACCAGTCCTGCAC 59.183 45.833 0.00 0.00 0.00 4.57
5844 5938 2.789409 AGATTAACCAGTCCTGCACC 57.211 50.000 0.00 0.00 0.00 5.01
5845 5939 1.282157 AGATTAACCAGTCCTGCACCC 59.718 52.381 0.00 0.00 0.00 4.61
5846 5940 0.331616 ATTAACCAGTCCTGCACCCC 59.668 55.000 0.00 0.00 0.00 4.95
5847 5941 1.063070 TTAACCAGTCCTGCACCCCA 61.063 55.000 0.00 0.00 0.00 4.96
5848 5942 1.063070 TAACCAGTCCTGCACCCCAA 61.063 55.000 0.00 0.00 0.00 4.12
5849 5943 1.729267 AACCAGTCCTGCACCCCAAT 61.729 55.000 0.00 0.00 0.00 3.16
5850 5944 0.844661 ACCAGTCCTGCACCCCAATA 60.845 55.000 0.00 0.00 0.00 1.90
5851 5945 0.331278 CCAGTCCTGCACCCCAATAA 59.669 55.000 0.00 0.00 0.00 1.40
5852 5946 1.063717 CCAGTCCTGCACCCCAATAAT 60.064 52.381 0.00 0.00 0.00 1.28
5853 5947 2.624029 CCAGTCCTGCACCCCAATAATT 60.624 50.000 0.00 0.00 0.00 1.40
5854 5948 2.689983 CAGTCCTGCACCCCAATAATTC 59.310 50.000 0.00 0.00 0.00 2.17
5855 5949 2.582636 AGTCCTGCACCCCAATAATTCT 59.417 45.455 0.00 0.00 0.00 2.40
5856 5950 3.785887 AGTCCTGCACCCCAATAATTCTA 59.214 43.478 0.00 0.00 0.00 2.10
5857 5951 3.883489 GTCCTGCACCCCAATAATTCTAC 59.117 47.826 0.00 0.00 0.00 2.59
5858 5952 3.117663 TCCTGCACCCCAATAATTCTACC 60.118 47.826 0.00 0.00 0.00 3.18
5859 5953 3.222603 CTGCACCCCAATAATTCTACCC 58.777 50.000 0.00 0.00 0.00 3.69
5860 5954 2.856231 TGCACCCCAATAATTCTACCCT 59.144 45.455 0.00 0.00 0.00 4.34
5861 5955 3.270960 TGCACCCCAATAATTCTACCCTT 59.729 43.478 0.00 0.00 0.00 3.95
5862 5956 3.636764 GCACCCCAATAATTCTACCCTTG 59.363 47.826 0.00 0.00 0.00 3.61
5863 5957 4.867086 CACCCCAATAATTCTACCCTTGT 58.133 43.478 0.00 0.00 0.00 3.16
5864 5958 4.644685 CACCCCAATAATTCTACCCTTGTG 59.355 45.833 0.00 0.00 0.00 3.33
5865 5959 4.215109 CCCCAATAATTCTACCCTTGTGG 58.785 47.826 0.00 0.00 41.37 4.17
5877 5971 2.420058 CCTTGTGGGATGGAACCTAC 57.580 55.000 0.00 0.00 40.93 3.18
5878 5972 1.406887 CCTTGTGGGATGGAACCTACG 60.407 57.143 0.00 0.00 42.95 3.51
5879 5973 0.616371 TTGTGGGATGGAACCTACGG 59.384 55.000 0.00 0.00 42.95 4.02
5880 5974 0.252330 TGTGGGATGGAACCTACGGA 60.252 55.000 0.00 0.00 42.95 4.69
5881 5975 0.177373 GTGGGATGGAACCTACGGAC 59.823 60.000 0.00 0.00 32.26 4.79
5882 5976 0.042131 TGGGATGGAACCTACGGACT 59.958 55.000 0.00 0.00 0.00 3.85
5883 5977 1.201424 GGGATGGAACCTACGGACTT 58.799 55.000 0.00 0.00 0.00 3.01
5884 5978 2.292389 TGGGATGGAACCTACGGACTTA 60.292 50.000 0.00 0.00 0.00 2.24
5885 5979 2.102084 GGGATGGAACCTACGGACTTAC 59.898 54.545 0.00 0.00 0.00 2.34
5886 5980 2.223665 GGATGGAACCTACGGACTTACG 60.224 54.545 0.00 0.00 40.31 3.18
5894 5988 3.593834 ACGGACTTACGTGTTTCCC 57.406 52.632 0.00 0.00 46.64 3.97
5895 5989 1.043022 ACGGACTTACGTGTTTCCCT 58.957 50.000 0.00 0.00 46.64 4.20
5896 5990 1.000171 ACGGACTTACGTGTTTCCCTC 60.000 52.381 0.00 0.00 46.64 4.30
5897 5991 1.000060 CGGACTTACGTGTTTCCCTCA 60.000 52.381 0.00 0.00 0.00 3.86
5898 5992 2.353406 CGGACTTACGTGTTTCCCTCAT 60.353 50.000 0.00 0.00 0.00 2.90
5899 5993 3.119388 CGGACTTACGTGTTTCCCTCATA 60.119 47.826 0.00 0.00 0.00 2.15
5900 5994 4.618927 CGGACTTACGTGTTTCCCTCATAA 60.619 45.833 0.00 0.00 0.00 1.90
5901 5995 4.628766 GGACTTACGTGTTTCCCTCATAAC 59.371 45.833 0.00 0.00 0.00 1.89
5902 5996 5.217978 ACTTACGTGTTTCCCTCATAACA 57.782 39.130 0.00 0.00 32.21 2.41
5903 5997 5.235516 ACTTACGTGTTTCCCTCATAACAG 58.764 41.667 0.00 0.00 35.13 3.16
5904 5998 2.423577 ACGTGTTTCCCTCATAACAGC 58.576 47.619 0.00 0.00 35.13 4.40
5905 5999 2.038557 ACGTGTTTCCCTCATAACAGCT 59.961 45.455 0.00 0.00 35.13 4.24
5906 6000 3.074412 CGTGTTTCCCTCATAACAGCTT 58.926 45.455 0.00 0.00 35.13 3.74
5907 6001 4.250464 CGTGTTTCCCTCATAACAGCTTA 58.750 43.478 0.00 0.00 35.13 3.09
5908 6002 4.330074 CGTGTTTCCCTCATAACAGCTTAG 59.670 45.833 0.00 0.00 35.13 2.18
5909 6003 5.488341 GTGTTTCCCTCATAACAGCTTAGA 58.512 41.667 0.00 0.00 35.13 2.10
5910 6004 5.582665 GTGTTTCCCTCATAACAGCTTAGAG 59.417 44.000 0.00 0.00 35.13 2.43
5911 6005 4.408182 TTCCCTCATAACAGCTTAGAGC 57.592 45.455 0.00 0.00 42.84 4.09
5912 6006 3.374764 TCCCTCATAACAGCTTAGAGCA 58.625 45.455 2.47 0.00 45.56 4.26
5913 6007 3.969976 TCCCTCATAACAGCTTAGAGCAT 59.030 43.478 2.47 0.00 45.56 3.79
5914 6008 4.410228 TCCCTCATAACAGCTTAGAGCATT 59.590 41.667 2.47 0.00 45.56 3.56
5915 6009 5.104360 TCCCTCATAACAGCTTAGAGCATTT 60.104 40.000 2.47 0.00 45.56 2.32
5916 6010 5.008415 CCCTCATAACAGCTTAGAGCATTTG 59.992 44.000 2.47 0.00 45.56 2.32
5917 6011 5.008415 CCTCATAACAGCTTAGAGCATTTGG 59.992 44.000 2.47 0.00 45.56 3.28
5918 6012 5.744171 TCATAACAGCTTAGAGCATTTGGA 58.256 37.500 2.47 0.00 45.56 3.53
5919 6013 6.359804 TCATAACAGCTTAGAGCATTTGGAT 58.640 36.000 2.47 0.00 45.56 3.41
5920 6014 6.830324 TCATAACAGCTTAGAGCATTTGGATT 59.170 34.615 2.47 0.00 45.56 3.01
5921 6015 4.978083 ACAGCTTAGAGCATTTGGATTG 57.022 40.909 2.47 0.00 45.56 2.67
5922 6016 4.338879 ACAGCTTAGAGCATTTGGATTGT 58.661 39.130 2.47 0.00 45.56 2.71
5923 6017 4.397417 ACAGCTTAGAGCATTTGGATTGTC 59.603 41.667 2.47 0.00 45.56 3.18
5924 6018 3.624861 AGCTTAGAGCATTTGGATTGTCG 59.375 43.478 2.47 0.00 45.56 4.35
5925 6019 3.375299 GCTTAGAGCATTTGGATTGTCGT 59.625 43.478 0.00 0.00 41.89 4.34
5926 6020 4.142600 GCTTAGAGCATTTGGATTGTCGTT 60.143 41.667 0.00 0.00 41.89 3.85
5927 6021 5.619981 GCTTAGAGCATTTGGATTGTCGTTT 60.620 40.000 0.00 0.00 41.89 3.60
5928 6022 4.425577 AGAGCATTTGGATTGTCGTTTC 57.574 40.909 0.00 0.00 0.00 2.78
5929 6023 3.820467 AGAGCATTTGGATTGTCGTTTCA 59.180 39.130 0.00 0.00 0.00 2.69
5930 6024 4.460382 AGAGCATTTGGATTGTCGTTTCAT 59.540 37.500 0.00 0.00 0.00 2.57
5931 6025 4.487948 AGCATTTGGATTGTCGTTTCATG 58.512 39.130 0.00 0.00 0.00 3.07
5932 6026 3.613737 GCATTTGGATTGTCGTTTCATGG 59.386 43.478 0.00 0.00 0.00 3.66
5933 6027 4.808558 CATTTGGATTGTCGTTTCATGGT 58.191 39.130 0.00 0.00 0.00 3.55
5934 6028 4.927978 TTTGGATTGTCGTTTCATGGTT 57.072 36.364 0.00 0.00 0.00 3.67
5935 6029 3.913548 TGGATTGTCGTTTCATGGTTG 57.086 42.857 0.00 0.00 0.00 3.77
5936 6030 3.218453 TGGATTGTCGTTTCATGGTTGT 58.782 40.909 0.00 0.00 0.00 3.32
5937 6031 4.390264 TGGATTGTCGTTTCATGGTTGTA 58.610 39.130 0.00 0.00 0.00 2.41
5938 6032 5.007034 TGGATTGTCGTTTCATGGTTGTAT 58.993 37.500 0.00 0.00 0.00 2.29
5939 6033 5.475220 TGGATTGTCGTTTCATGGTTGTATT 59.525 36.000 0.00 0.00 0.00 1.89
5940 6034 6.015856 TGGATTGTCGTTTCATGGTTGTATTT 60.016 34.615 0.00 0.00 0.00 1.40
5941 6035 7.175119 TGGATTGTCGTTTCATGGTTGTATTTA 59.825 33.333 0.00 0.00 0.00 1.40
5942 6036 8.188139 GGATTGTCGTTTCATGGTTGTATTTAT 58.812 33.333 0.00 0.00 0.00 1.40
5943 6037 9.567848 GATTGTCGTTTCATGGTTGTATTTATT 57.432 29.630 0.00 0.00 0.00 1.40
5944 6038 9.921637 ATTGTCGTTTCATGGTTGTATTTATTT 57.078 25.926 0.00 0.00 0.00 1.40
5945 6039 9.751542 TTGTCGTTTCATGGTTGTATTTATTTT 57.248 25.926 0.00 0.00 0.00 1.82
5959 6053 9.609950 TTGTATTTATTTTACAAGTGTAACCGC 57.390 29.630 3.38 0.00 39.92 5.68
5960 6054 9.001542 TGTATTTATTTTACAAGTGTAACCGCT 57.998 29.630 3.38 0.00 39.92 5.52
5961 6055 9.830294 GTATTTATTTTACAAGTGTAACCGCTT 57.170 29.630 3.38 0.00 42.05 4.68
5964 6058 8.830201 TTATTTTACAAGTGTAACCGCTTAGA 57.170 30.769 3.38 0.00 39.36 2.10
5965 6059 6.774354 TTTTACAAGTGTAACCGCTTAGAG 57.226 37.500 3.38 0.00 39.36 2.43
5966 6060 2.685100 ACAAGTGTAACCGCTTAGAGC 58.315 47.619 0.00 0.00 39.36 4.09
5967 6061 2.036733 ACAAGTGTAACCGCTTAGAGCA 59.963 45.455 0.50 0.00 42.58 4.26
5968 6062 3.064207 CAAGTGTAACCGCTTAGAGCAA 58.936 45.455 0.50 0.00 42.58 3.91
5969 6063 3.611766 AGTGTAACCGCTTAGAGCAAT 57.388 42.857 0.50 0.00 42.58 3.56
5970 6064 3.939066 AGTGTAACCGCTTAGAGCAATT 58.061 40.909 0.50 0.00 42.58 2.32
5971 6065 3.933332 AGTGTAACCGCTTAGAGCAATTC 59.067 43.478 0.50 0.00 42.58 2.17
5972 6066 3.933332 GTGTAACCGCTTAGAGCAATTCT 59.067 43.478 0.50 0.00 42.58 2.40
5973 6067 5.105473 AGTGTAACCGCTTAGAGCAATTCTA 60.105 40.000 0.50 0.00 42.58 2.10
5974 6068 5.232414 GTGTAACCGCTTAGAGCAATTCTAG 59.768 44.000 0.50 0.00 42.58 2.43
5975 6069 2.827652 ACCGCTTAGAGCAATTCTAGC 58.172 47.619 0.50 0.00 42.58 3.42
5976 6070 2.139118 CCGCTTAGAGCAATTCTAGCC 58.861 52.381 0.50 0.00 42.58 3.93
5977 6071 1.789464 CGCTTAGAGCAATTCTAGCCG 59.211 52.381 0.50 0.00 42.58 5.52
5978 6072 2.543861 CGCTTAGAGCAATTCTAGCCGA 60.544 50.000 0.50 0.00 42.58 5.54
5979 6073 3.658709 GCTTAGAGCAATTCTAGCCGAT 58.341 45.455 0.00 0.00 41.89 4.18
5980 6074 3.677596 GCTTAGAGCAATTCTAGCCGATC 59.322 47.826 0.00 0.00 41.89 3.69
5981 6075 2.829741 AGAGCAATTCTAGCCGATCC 57.170 50.000 0.00 0.00 33.23 3.36
5982 6076 1.346068 AGAGCAATTCTAGCCGATCCC 59.654 52.381 0.00 0.00 33.23 3.85
5983 6077 0.398318 AGCAATTCTAGCCGATCCCC 59.602 55.000 0.00 0.00 0.00 4.81
5984 6078 0.398318 GCAATTCTAGCCGATCCCCT 59.602 55.000 0.00 0.00 0.00 4.79
5985 6079 1.623811 GCAATTCTAGCCGATCCCCTA 59.376 52.381 0.00 0.00 0.00 3.53
5986 6080 2.354203 GCAATTCTAGCCGATCCCCTAG 60.354 54.545 7.62 7.62 33.88 3.02
5987 6081 3.165875 CAATTCTAGCCGATCCCCTAGA 58.834 50.000 11.15 11.15 38.53 2.43
5989 6083 2.289592 TCTAGCCGATCCCCTAGAAC 57.710 55.000 12.29 0.00 37.65 3.01
5990 6084 1.203025 TCTAGCCGATCCCCTAGAACC 60.203 57.143 12.29 0.00 37.65 3.62
5991 6085 0.538977 TAGCCGATCCCCTAGAACCG 60.539 60.000 0.00 0.00 0.00 4.44
5992 6086 2.868986 GCCGATCCCCTAGAACCGG 61.869 68.421 0.00 0.00 39.88 5.28
5993 6087 1.457079 CCGATCCCCTAGAACCGGT 60.457 63.158 0.00 0.00 33.02 5.28
5994 6088 1.047034 CCGATCCCCTAGAACCGGTT 61.047 60.000 22.50 22.50 33.02 4.44
5995 6089 1.696063 CGATCCCCTAGAACCGGTTA 58.304 55.000 22.33 4.41 0.00 2.85
5996 6090 1.612463 CGATCCCCTAGAACCGGTTAG 59.388 57.143 22.33 15.16 0.00 2.34
5997 6091 2.750807 CGATCCCCTAGAACCGGTTAGA 60.751 54.545 22.33 10.26 0.00 2.10
5998 6092 2.449137 TCCCCTAGAACCGGTTAGAG 57.551 55.000 22.33 19.30 0.00 2.43
5999 6093 1.063417 TCCCCTAGAACCGGTTAGAGG 60.063 57.143 28.78 28.78 0.00 3.69
6000 6094 1.411041 CCCTAGAACCGGTTAGAGGG 58.589 60.000 35.21 35.21 37.95 4.30
6001 6095 1.411041 CCTAGAACCGGTTAGAGGGG 58.589 60.000 28.34 19.03 0.00 4.79
6002 6096 1.342774 CCTAGAACCGGTTAGAGGGGT 60.343 57.143 28.34 5.06 34.99 4.95
6003 6097 2.091665 CCTAGAACCGGTTAGAGGGGTA 60.092 54.545 28.34 10.45 32.68 3.69
6004 6098 2.629017 AGAACCGGTTAGAGGGGTAA 57.371 50.000 22.33 0.00 32.68 2.85
6005 6099 3.126323 AGAACCGGTTAGAGGGGTAAT 57.874 47.619 22.33 0.00 32.68 1.89
6024 6118 8.161425 GGGGTAATATCTCCTAAATGCTACAAA 58.839 37.037 0.00 0.00 0.00 2.83
6085 6179 0.107654 GTACTCCATTGCTCGGGCTT 60.108 55.000 9.62 0.00 39.59 4.35
6123 6217 2.289532 GCTCAGCACCCTCCTCTGT 61.290 63.158 0.00 0.00 0.00 3.41
6149 6260 2.195683 CCCCCAATCCCCATCGTG 59.804 66.667 0.00 0.00 0.00 4.35
6209 6321 3.282374 ATGGCCGGTTCCCTTGGTC 62.282 63.158 1.90 0.00 0.00 4.02
6266 6378 2.410469 GCAATGAGCGCATCACCC 59.590 61.111 11.47 0.00 41.91 4.61
6274 6386 2.107750 CGCATCACCCTCGCATCT 59.892 61.111 0.00 0.00 0.00 2.90
6282 6394 0.616111 ACCCTCGCATCTTCCTCACT 60.616 55.000 0.00 0.00 0.00 3.41
6288 6400 1.900351 CATCTTCCTCACTCCGCCA 59.100 57.895 0.00 0.00 0.00 5.69
6316 6428 3.785859 GCAGCCCCATCCGACAGA 61.786 66.667 0.00 0.00 0.00 3.41
6397 6509 1.940883 GACAGCGGGTATGACGGACA 61.941 60.000 0.00 0.00 0.00 4.02
6401 6513 1.594293 CGGGTATGACGGACATGGC 60.594 63.158 3.21 0.00 39.77 4.40
6404 6516 1.160329 GGTATGACGGACATGGCTGC 61.160 60.000 7.50 0.57 39.77 5.25
6431 6543 1.244816 TATAGATCGGCAGACCCACG 58.755 55.000 0.00 0.00 0.00 4.94
6438 6550 0.168128 CGGCAGACCCACGAAAAATC 59.832 55.000 0.00 0.00 0.00 2.17
6459 6571 0.982852 TGGCTCGGATCCTTCCACAT 60.983 55.000 10.75 0.00 42.74 3.21
6460 6572 0.181350 GGCTCGGATCCTTCCACATT 59.819 55.000 10.75 0.00 42.74 2.71
6496 6608 1.207593 CGAGTACGACGTCCGGTTT 59.792 57.895 10.58 0.00 43.93 3.27
6501 6613 1.451337 TACGACGTCCGGTTTGTCCA 61.451 55.000 10.58 0.00 43.93 4.02
6515 6627 1.007038 GTCCAGTTACACGGCGTCA 60.007 57.895 10.85 0.00 0.00 4.35
6516 6628 0.389426 GTCCAGTTACACGGCGTCAT 60.389 55.000 10.85 3.61 0.00 3.06
6536 6648 1.591504 GGGCCGCCGAAATTTTGAGA 61.592 55.000 7.02 0.00 0.00 3.27
6537 6649 0.242555 GGCCGCCGAAATTTTGAGAA 59.757 50.000 7.02 0.00 0.00 2.87
6560 6672 3.207677 GAGATGCCGATGCTCGATT 57.792 52.632 7.07 0.00 43.74 3.34
6568 6680 0.319383 CGATGCTCGATTCTCCCCAG 60.319 60.000 0.00 0.00 43.74 4.45
6570 6682 2.049627 ATGCTCGATTCTCCCCAGCC 62.050 60.000 0.00 0.00 0.00 4.85
6571 6683 2.419198 CTCGATTCTCCCCAGCCG 59.581 66.667 0.00 0.00 0.00 5.52
6572 6684 2.043349 TCGATTCTCCCCAGCCGA 60.043 61.111 0.00 0.00 0.00 5.54
6587 6699 2.432628 CGAGGGCGGTCAACACTC 60.433 66.667 0.00 0.00 0.00 3.51
6588 6700 2.047179 GAGGGCGGTCAACACTCC 60.047 66.667 0.00 0.00 0.00 3.85
6589 6701 2.847234 AGGGCGGTCAACACTCCA 60.847 61.111 0.00 0.00 0.00 3.86
6627 6739 4.368543 GGCGAGGGAACGGTTCGT 62.369 66.667 14.23 4.56 43.97 3.85
6628 6740 3.110178 GCGAGGGAACGGTTCGTG 61.110 66.667 14.23 5.55 39.99 4.35
6629 6741 3.110178 CGAGGGAACGGTTCGTGC 61.110 66.667 14.23 5.34 39.99 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.812347 TCCATCTAGGATGTTTTATATGCATTT 57.188 29.630 3.54 0.00 43.07 2.32
51 52 9.812347 TGTTCCATGCTTTTATATTATCCATCT 57.188 29.630 0.00 0.00 0.00 2.90
96 97 5.282510 CCTGTAGATTGATACGTCTCCAAC 58.717 45.833 0.00 0.00 0.00 3.77
97 98 4.341235 CCCTGTAGATTGATACGTCTCCAA 59.659 45.833 0.00 0.00 0.00 3.53
98 99 3.889538 CCCTGTAGATTGATACGTCTCCA 59.110 47.826 0.00 0.00 0.00 3.86
99 100 3.305471 GCCCTGTAGATTGATACGTCTCC 60.305 52.174 0.00 0.00 0.00 3.71
100 101 3.305471 GGCCCTGTAGATTGATACGTCTC 60.305 52.174 0.00 0.00 0.00 3.36
101 102 2.628657 GGCCCTGTAGATTGATACGTCT 59.371 50.000 0.00 0.00 0.00 4.18
102 103 2.364324 TGGCCCTGTAGATTGATACGTC 59.636 50.000 0.00 0.00 0.00 4.34
103 104 2.394632 TGGCCCTGTAGATTGATACGT 58.605 47.619 0.00 0.00 0.00 3.57
104 105 3.469008 TTGGCCCTGTAGATTGATACG 57.531 47.619 0.00 0.00 0.00 3.06
105 106 3.503748 GCATTGGCCCTGTAGATTGATAC 59.496 47.826 0.00 0.00 0.00 2.24
106 107 3.395607 AGCATTGGCCCTGTAGATTGATA 59.604 43.478 0.00 0.00 42.56 2.15
107 108 2.176364 AGCATTGGCCCTGTAGATTGAT 59.824 45.455 0.00 0.00 42.56 2.57
108 109 1.565759 AGCATTGGCCCTGTAGATTGA 59.434 47.619 0.00 0.00 42.56 2.57
109 110 2.062971 AGCATTGGCCCTGTAGATTG 57.937 50.000 0.00 0.00 42.56 2.67
110 111 2.381911 CAAGCATTGGCCCTGTAGATT 58.618 47.619 0.00 0.00 43.94 2.40
123 124 1.541147 CCACACACGAATCCAAGCATT 59.459 47.619 0.00 0.00 0.00 3.56
124 125 1.167851 CCACACACGAATCCAAGCAT 58.832 50.000 0.00 0.00 0.00 3.79
138 139 3.314541 AGGAATGAGTAACGACCACAC 57.685 47.619 0.00 0.00 0.00 3.82
146 147 5.036117 TGGCTTCCATAGGAATGAGTAAC 57.964 43.478 0.00 0.00 41.23 2.50
159 160 2.142292 AAACGCTCCCTGGCTTCCAT 62.142 55.000 0.00 0.00 30.82 3.41
175 176 2.092323 GGGCAGATCCACTAACCAAAC 58.908 52.381 0.00 0.00 36.21 2.93
184 185 4.530857 CCCGTCGGGCAGATCCAC 62.531 72.222 19.48 0.00 35.35 4.02
188 189 2.123251 ATCTCCCGTCGGGCAGAT 60.123 61.111 26.67 26.67 43.94 2.90
195 196 1.655329 GAGCTACCATCTCCCGTCG 59.345 63.158 0.00 0.00 0.00 5.12
198 199 2.565645 CCCGAGCTACCATCTCCCG 61.566 68.421 0.00 0.00 0.00 5.14
229 230 2.034999 TGGACCGCCATCCAAACC 59.965 61.111 1.01 0.00 46.08 3.27
262 263 8.600625 CGACCAAAATAGAACGAGATGATTAAA 58.399 33.333 0.00 0.00 0.00 1.52
284 285 1.530323 ATAAAGTGCCACAACCGACC 58.470 50.000 0.00 0.00 0.00 4.79
286 287 5.968528 AAATTATAAAGTGCCACAACCGA 57.031 34.783 0.00 0.00 0.00 4.69
313 318 2.840974 GCTCGCTCCAAGCTAAACA 58.159 52.632 0.00 0.00 39.60 2.83
322 327 1.301716 GTTCCACAAGCTCGCTCCA 60.302 57.895 0.00 0.00 0.00 3.86
351 359 7.069331 CCCCATTATTATTAAGCAAAGTGACCA 59.931 37.037 0.00 0.00 0.00 4.02
373 381 2.756691 GTGATGCATGCAGCCCCA 60.757 61.111 31.30 19.49 44.83 4.96
540 573 8.669946 TCATCTTCTAGCTACGAGATATATGG 57.330 38.462 11.77 3.22 0.00 2.74
568 601 8.822805 TCAAACTTTCTACAATGTATCCCTAGT 58.177 33.333 0.00 0.00 0.00 2.57
628 661 4.981806 TGTCCTGTTTCTTGTTTCTTGG 57.018 40.909 0.00 0.00 0.00 3.61
781 825 1.026718 GGATGTATGCCGCCATAGCC 61.027 60.000 0.00 0.00 34.72 3.93
845 891 5.113446 TGGGGGCTATTATCGTTTTGTTA 57.887 39.130 0.00 0.00 0.00 2.41
853 899 3.750371 TGTCATTTGGGGGCTATTATCG 58.250 45.455 0.00 0.00 0.00 2.92
869 915 3.610040 TCGTCAACATAGCCTTGTCAT 57.390 42.857 0.00 0.00 0.00 3.06
870 916 3.610040 ATCGTCAACATAGCCTTGTCA 57.390 42.857 0.00 0.00 0.00 3.58
934 991 8.690884 CCGCATATATATATAGCCAAGATAGCT 58.309 37.037 4.90 0.00 44.49 3.32
956 1013 0.696143 TCCCCCTTCCAATATCCGCA 60.696 55.000 0.00 0.00 0.00 5.69
957 1014 0.036875 CTCCCCCTTCCAATATCCGC 59.963 60.000 0.00 0.00 0.00 5.54
1042 1100 6.345298 TCAACAGATACACACTCAGTTTCAA 58.655 36.000 0.00 0.00 0.00 2.69
1063 1121 4.122046 CAGTTAGCCATGACGATGATCAA 58.878 43.478 0.00 0.00 30.82 2.57
1334 1401 0.108138 AGCAGCAATAGGTCGACCAC 60.108 55.000 35.00 18.43 38.89 4.16
1363 1430 1.028130 TTGCACAGAATCGCCACAAA 58.972 45.000 0.00 0.00 0.00 2.83
1453 1520 4.168101 TCCCCTCACTATAATGCTAAGGG 58.832 47.826 0.48 0.48 41.41 3.95
1491 1558 0.546598 CACCTCATCCTTGTACCCCC 59.453 60.000 0.00 0.00 0.00 5.40
1565 1632 1.425066 AGAGTGTTTTGATCTGCCCCA 59.575 47.619 0.00 0.00 0.00 4.96
1739 1807 4.857509 TTTAACTTTGGCGGCTTACATT 57.142 36.364 11.43 0.94 0.00 2.71
1842 1911 1.112315 AACGGCTGGGTGCAAAATGA 61.112 50.000 0.00 0.00 45.15 2.57
2017 2086 9.614792 AGGTAAAGTTCTATATGTGGCTTTTAG 57.385 33.333 0.00 0.00 0.00 1.85
2453 2527 4.681978 GGAAGGGCACAGCGACGT 62.682 66.667 0.00 0.00 0.00 4.34
2745 2819 6.841781 TTACTAAATAGGATGGGAAGGCTT 57.158 37.500 0.00 0.00 0.00 4.35
2852 2927 1.211949 GTCAATACCTAGGGCTGCCAA 59.788 52.381 22.05 6.91 0.00 4.52
2880 2955 0.563173 TTGGTGGGATTTTGGGGTCA 59.437 50.000 0.00 0.00 0.00 4.02
3067 3142 2.484264 GCTTGCGTTCTGGTTTCTATGT 59.516 45.455 0.00 0.00 0.00 2.29
3357 3432 0.602562 TGGCCAAGGCTTTTGATTCG 59.397 50.000 0.61 0.00 41.60 3.34
3420 3495 2.007608 GTCCAGAACGTGATTAAGGCC 58.992 52.381 0.00 0.00 0.00 5.19
3596 3671 2.398588 AGAAAGATGGTGCCCGAGATA 58.601 47.619 0.00 0.00 0.00 1.98
3638 3713 9.177608 CTCAAAATTGGAGGATAGTGAATACAA 57.822 33.333 0.00 0.00 0.00 2.41
3639 3714 7.283127 GCTCAAAATTGGAGGATAGTGAATACA 59.717 37.037 0.00 0.00 32.96 2.29
3765 3840 0.107017 ACATTCATGGGGAGAAGGCG 60.107 55.000 0.00 0.00 30.48 5.52
3812 3887 5.721960 ACACATTTAGAGCTCCCTTTCTCTA 59.278 40.000 10.93 0.00 40.00 2.43
3934 4009 1.064463 TGATCATGAAGGGAAGGCCAC 60.064 52.381 5.01 0.00 35.15 5.01
3985 4060 3.059188 CGGCGCCGTAAAAATCATATTCT 60.059 43.478 39.71 0.00 34.35 2.40
4008 4083 2.203394 CATCTCCGGGCCAATGGG 60.203 66.667 4.39 0.00 37.18 4.00
4170 4246 2.364970 CCTGGATCTAGCACAAGAGGAG 59.635 54.545 0.00 0.00 0.00 3.69
4228 4304 3.330701 AGGACAAAGATGAAGTGGGCTAA 59.669 43.478 0.00 0.00 0.00 3.09
4425 4502 2.028476 TCACTGTCCGTTGGTATTGAGG 60.028 50.000 0.00 0.00 0.00 3.86
4823 4900 2.232941 TCAGGTACGATCAGGGACAAAC 59.767 50.000 0.00 0.00 0.00 2.93
4848 4925 2.275134 TGGCAGTTGAAGCTCATTCA 57.725 45.000 0.00 0.00 46.31 2.57
4858 4935 5.045942 TGTCTGATATACCTTTGGCAGTTGA 60.046 40.000 0.00 0.00 0.00 3.18
5068 5145 2.641815 ACAATCCAGCAAAGAGGAGAGT 59.358 45.455 0.00 0.00 37.34 3.24
5102 5179 4.963276 TTCGCGATTCTGAATTGGAATT 57.037 36.364 10.88 0.00 34.09 2.17
5246 5324 0.176449 TGCGATGTGGAGACTGATGG 59.824 55.000 0.00 0.00 0.00 3.51
5277 5355 5.724328 TGTTAGTCTGCTATCTGTTTCTGG 58.276 41.667 0.00 0.00 0.00 3.86
5373 5462 0.608640 CGTTCAAGTGGAGCTAGGGT 59.391 55.000 0.00 0.00 0.00 4.34
5403 5492 2.749110 GAACTCGACGAGCAGCCACA 62.749 60.000 24.38 0.00 32.04 4.17
5698 5790 1.814394 CTACAGGTAGGTACACACGCA 59.186 52.381 0.00 0.00 0.00 5.24
5747 5841 5.415701 GTCAATGAGAAATAGCAGTTCCCAA 59.584 40.000 0.00 0.00 0.00 4.12
5772 5866 4.385825 TGTAACTTGGTAGGCAGTTCTTG 58.614 43.478 0.00 0.00 34.92 3.02
5840 5934 3.595190 AGGGTAGAATTATTGGGGTGC 57.405 47.619 0.00 0.00 0.00 5.01
5841 5935 4.644685 CACAAGGGTAGAATTATTGGGGTG 59.355 45.833 0.00 0.00 0.00 4.61
5842 5936 4.325816 CCACAAGGGTAGAATTATTGGGGT 60.326 45.833 0.00 0.00 39.19 4.95
5843 5937 4.215109 CCACAAGGGTAGAATTATTGGGG 58.785 47.826 0.00 0.00 38.03 4.96
5858 5952 1.406887 CGTAGGTTCCATCCCACAAGG 60.407 57.143 0.00 0.00 0.00 3.61
5859 5953 2.024176 CGTAGGTTCCATCCCACAAG 57.976 55.000 0.00 0.00 0.00 3.16
5882 5976 3.998341 GCTGTTATGAGGGAAACACGTAA 59.002 43.478 0.00 0.00 32.43 3.18
5883 5977 3.259876 AGCTGTTATGAGGGAAACACGTA 59.740 43.478 0.00 0.00 32.43 3.57
5884 5978 2.038557 AGCTGTTATGAGGGAAACACGT 59.961 45.455 0.00 0.00 32.43 4.49
5885 5979 2.699954 AGCTGTTATGAGGGAAACACG 58.300 47.619 0.00 0.00 32.43 4.49
5886 5980 5.488341 TCTAAGCTGTTATGAGGGAAACAC 58.512 41.667 0.00 0.00 32.43 3.32
5887 5981 5.734720 CTCTAAGCTGTTATGAGGGAAACA 58.265 41.667 0.00 0.00 34.57 2.83
5888 5982 4.572795 GCTCTAAGCTGTTATGAGGGAAAC 59.427 45.833 0.00 0.00 38.45 2.78
5889 5983 4.225042 TGCTCTAAGCTGTTATGAGGGAAA 59.775 41.667 0.11 0.00 42.97 3.13
5890 5984 3.774766 TGCTCTAAGCTGTTATGAGGGAA 59.225 43.478 0.11 0.00 42.97 3.97
5891 5985 3.374764 TGCTCTAAGCTGTTATGAGGGA 58.625 45.455 0.11 0.00 42.97 4.20
5892 5986 3.827008 TGCTCTAAGCTGTTATGAGGG 57.173 47.619 0.11 0.00 42.97 4.30
5893 5987 5.008415 CCAAATGCTCTAAGCTGTTATGAGG 59.992 44.000 0.11 0.00 42.97 3.86
5894 5988 5.819379 TCCAAATGCTCTAAGCTGTTATGAG 59.181 40.000 0.11 0.00 42.97 2.90
5895 5989 5.744171 TCCAAATGCTCTAAGCTGTTATGA 58.256 37.500 0.11 0.00 42.97 2.15
5896 5990 6.630444 ATCCAAATGCTCTAAGCTGTTATG 57.370 37.500 0.11 0.00 42.97 1.90
5897 5991 6.604795 ACAATCCAAATGCTCTAAGCTGTTAT 59.395 34.615 0.11 0.00 42.97 1.89
5898 5992 5.945784 ACAATCCAAATGCTCTAAGCTGTTA 59.054 36.000 0.11 0.00 42.97 2.41
5899 5993 4.768968 ACAATCCAAATGCTCTAAGCTGTT 59.231 37.500 0.11 0.00 42.97 3.16
5900 5994 4.338879 ACAATCCAAATGCTCTAAGCTGT 58.661 39.130 0.11 0.00 42.97 4.40
5901 5995 4.495349 CGACAATCCAAATGCTCTAAGCTG 60.495 45.833 0.11 0.00 42.97 4.24
5902 5996 3.624861 CGACAATCCAAATGCTCTAAGCT 59.375 43.478 0.11 0.00 42.97 3.74
5903 5997 3.375299 ACGACAATCCAAATGCTCTAAGC 59.625 43.478 0.00 0.00 42.82 3.09
5904 5998 5.551760 AACGACAATCCAAATGCTCTAAG 57.448 39.130 0.00 0.00 0.00 2.18
5905 5999 5.471797 TGAAACGACAATCCAAATGCTCTAA 59.528 36.000 0.00 0.00 0.00 2.10
5906 6000 5.000591 TGAAACGACAATCCAAATGCTCTA 58.999 37.500 0.00 0.00 0.00 2.43
5907 6001 3.820467 TGAAACGACAATCCAAATGCTCT 59.180 39.130 0.00 0.00 0.00 4.09
5908 6002 4.159377 TGAAACGACAATCCAAATGCTC 57.841 40.909 0.00 0.00 0.00 4.26
5909 6003 4.487948 CATGAAACGACAATCCAAATGCT 58.512 39.130 0.00 0.00 0.00 3.79
5910 6004 3.613737 CCATGAAACGACAATCCAAATGC 59.386 43.478 0.00 0.00 0.00 3.56
5911 6005 4.808558 ACCATGAAACGACAATCCAAATG 58.191 39.130 0.00 0.00 0.00 2.32
5912 6006 5.221422 ACAACCATGAAACGACAATCCAAAT 60.221 36.000 0.00 0.00 0.00 2.32
5913 6007 4.098654 ACAACCATGAAACGACAATCCAAA 59.901 37.500 0.00 0.00 0.00 3.28
5914 6008 3.634448 ACAACCATGAAACGACAATCCAA 59.366 39.130 0.00 0.00 0.00 3.53
5915 6009 3.218453 ACAACCATGAAACGACAATCCA 58.782 40.909 0.00 0.00 0.00 3.41
5916 6010 3.915437 ACAACCATGAAACGACAATCC 57.085 42.857 0.00 0.00 0.00 3.01
5917 6011 9.567848 AATAAATACAACCATGAAACGACAATC 57.432 29.630 0.00 0.00 0.00 2.67
5918 6012 9.921637 AAATAAATACAACCATGAAACGACAAT 57.078 25.926 0.00 0.00 0.00 2.71
5919 6013 9.751542 AAAATAAATACAACCATGAAACGACAA 57.248 25.926 0.00 0.00 0.00 3.18
5933 6027 9.609950 GCGGTTACACTTGTAAAATAAATACAA 57.390 29.630 3.38 0.00 41.58 2.41
5934 6028 9.001542 AGCGGTTACACTTGTAAAATAAATACA 57.998 29.630 3.38 0.00 41.58 2.29
5935 6029 9.830294 AAGCGGTTACACTTGTAAAATAAATAC 57.170 29.630 0.00 0.00 41.58 1.89
5938 6032 9.270640 TCTAAGCGGTTACACTTGTAAAATAAA 57.729 29.630 2.26 0.00 41.58 1.40
5939 6033 8.830201 TCTAAGCGGTTACACTTGTAAAATAA 57.170 30.769 2.26 0.00 41.58 1.40
5940 6034 7.063780 GCTCTAAGCGGTTACACTTGTAAAATA 59.936 37.037 2.26 0.00 41.58 1.40
5941 6035 6.128363 GCTCTAAGCGGTTACACTTGTAAAAT 60.128 38.462 2.26 0.00 41.58 1.82
5942 6036 5.178067 GCTCTAAGCGGTTACACTTGTAAAA 59.822 40.000 2.26 0.00 41.58 1.52
5943 6037 4.687483 GCTCTAAGCGGTTACACTTGTAAA 59.313 41.667 2.26 0.00 41.58 2.01
5944 6038 4.240096 GCTCTAAGCGGTTACACTTGTAA 58.760 43.478 2.26 0.00 38.10 2.41
5945 6039 3.256383 TGCTCTAAGCGGTTACACTTGTA 59.744 43.478 2.26 0.00 46.26 2.41
5946 6040 2.036733 TGCTCTAAGCGGTTACACTTGT 59.963 45.455 2.26 0.00 46.26 3.16
5947 6041 2.683968 TGCTCTAAGCGGTTACACTTG 58.316 47.619 2.26 0.00 46.26 3.16
5948 6042 3.396260 TTGCTCTAAGCGGTTACACTT 57.604 42.857 2.26 0.00 46.26 3.16
5949 6043 3.611766 ATTGCTCTAAGCGGTTACACT 57.388 42.857 2.26 0.00 46.26 3.55
5950 6044 3.933332 AGAATTGCTCTAAGCGGTTACAC 59.067 43.478 2.26 0.00 46.26 2.90
5951 6045 4.202245 AGAATTGCTCTAAGCGGTTACA 57.798 40.909 2.26 0.00 46.26 2.41
5952 6046 4.209495 GCTAGAATTGCTCTAAGCGGTTAC 59.791 45.833 2.26 0.00 46.26 2.50
5953 6047 4.369182 GCTAGAATTGCTCTAAGCGGTTA 58.631 43.478 6.91 6.91 46.26 2.85
5954 6048 3.198872 GCTAGAATTGCTCTAAGCGGTT 58.801 45.455 4.76 4.76 46.26 4.44
5955 6049 2.483889 GGCTAGAATTGCTCTAAGCGGT 60.484 50.000 0.00 0.00 46.26 5.68
5956 6050 2.139118 GGCTAGAATTGCTCTAAGCGG 58.861 52.381 0.00 0.00 46.26 5.52
5957 6051 1.789464 CGGCTAGAATTGCTCTAAGCG 59.211 52.381 0.00 0.00 46.26 4.68
5958 6052 3.099267 TCGGCTAGAATTGCTCTAAGC 57.901 47.619 0.00 0.00 42.82 3.09
5959 6053 4.241681 GGATCGGCTAGAATTGCTCTAAG 58.758 47.826 0.00 0.00 36.17 2.18
5960 6054 3.006967 GGGATCGGCTAGAATTGCTCTAA 59.993 47.826 0.00 0.00 36.17 2.10
5961 6055 2.563179 GGGATCGGCTAGAATTGCTCTA 59.437 50.000 0.00 0.00 35.41 2.43
5962 6056 1.346068 GGGATCGGCTAGAATTGCTCT 59.654 52.381 0.00 0.00 38.28 4.09
5963 6057 1.609320 GGGGATCGGCTAGAATTGCTC 60.609 57.143 0.00 0.00 0.00 4.26
5964 6058 0.398318 GGGGATCGGCTAGAATTGCT 59.602 55.000 0.00 0.00 0.00 3.91
5965 6059 0.398318 AGGGGATCGGCTAGAATTGC 59.602 55.000 0.00 0.00 0.00 3.56
5966 6060 3.165875 TCTAGGGGATCGGCTAGAATTG 58.834 50.000 0.00 0.00 0.00 2.32
5967 6061 3.544698 TCTAGGGGATCGGCTAGAATT 57.455 47.619 0.00 0.00 0.00 2.17
5968 6062 3.166679 GTTCTAGGGGATCGGCTAGAAT 58.833 50.000 0.00 0.00 39.57 2.40
5969 6063 2.595238 GTTCTAGGGGATCGGCTAGAA 58.405 52.381 0.00 0.00 36.45 2.10
5970 6064 1.203025 GGTTCTAGGGGATCGGCTAGA 60.203 57.143 0.00 0.00 0.00 2.43
5971 6065 1.258676 GGTTCTAGGGGATCGGCTAG 58.741 60.000 0.00 0.00 0.00 3.42
5972 6066 0.538977 CGGTTCTAGGGGATCGGCTA 60.539 60.000 0.00 0.00 0.00 3.93
5973 6067 1.833049 CGGTTCTAGGGGATCGGCT 60.833 63.158 0.00 0.00 0.00 5.52
5974 6068 2.735237 CGGTTCTAGGGGATCGGC 59.265 66.667 0.00 0.00 0.00 5.54
5975 6069 1.047034 AACCGGTTCTAGGGGATCGG 61.047 60.000 15.86 10.52 42.54 4.18
5976 6070 1.612463 CTAACCGGTTCTAGGGGATCG 59.388 57.143 26.16 0.00 0.00 3.69
5977 6071 2.892215 CTCTAACCGGTTCTAGGGGATC 59.108 54.545 26.16 0.00 0.00 3.36
5978 6072 2.425975 CCTCTAACCGGTTCTAGGGGAT 60.426 54.545 26.20 2.48 37.93 3.85
5979 6073 1.063417 CCTCTAACCGGTTCTAGGGGA 60.063 57.143 26.20 13.97 37.93 4.81
5980 6074 1.411041 CCTCTAACCGGTTCTAGGGG 58.589 60.000 28.53 24.59 29.40 4.79
5981 6075 1.411041 CCCTCTAACCGGTTCTAGGG 58.589 60.000 35.28 35.28 37.98 3.53
5982 6076 1.342774 ACCCCTCTAACCGGTTCTAGG 60.343 57.143 28.96 28.96 0.00 3.02
5983 6077 2.156102 ACCCCTCTAACCGGTTCTAG 57.844 55.000 26.16 21.02 0.00 2.43
5984 6078 3.756082 TTACCCCTCTAACCGGTTCTA 57.244 47.619 26.16 12.33 0.00 2.10
5985 6079 2.629017 TTACCCCTCTAACCGGTTCT 57.371 50.000 26.16 2.77 0.00 3.01
5986 6080 4.837298 AGATATTACCCCTCTAACCGGTTC 59.163 45.833 26.16 3.80 0.00 3.62
5987 6081 4.824276 AGATATTACCCCTCTAACCGGTT 58.176 43.478 25.64 25.64 0.00 4.44
5988 6082 4.414677 GAGATATTACCCCTCTAACCGGT 58.585 47.826 0.00 0.00 0.00 5.28
5989 6083 3.768215 GGAGATATTACCCCTCTAACCGG 59.232 52.174 0.00 0.00 0.00 5.28
5990 6084 4.675038 AGGAGATATTACCCCTCTAACCG 58.325 47.826 0.00 0.00 0.00 4.44
5991 6085 8.541234 CATTTAGGAGATATTACCCCTCTAACC 58.459 40.741 0.00 0.00 0.00 2.85
5992 6086 8.041919 GCATTTAGGAGATATTACCCCTCTAAC 58.958 40.741 0.00 0.00 0.00 2.34
5993 6087 7.962003 AGCATTTAGGAGATATTACCCCTCTAA 59.038 37.037 0.00 0.00 0.00 2.10
5994 6088 7.488205 AGCATTTAGGAGATATTACCCCTCTA 58.512 38.462 0.00 0.00 0.00 2.43
5995 6089 6.335115 AGCATTTAGGAGATATTACCCCTCT 58.665 40.000 0.00 0.00 0.00 3.69
5996 6090 6.628644 AGCATTTAGGAGATATTACCCCTC 57.371 41.667 0.00 0.00 0.00 4.30
5997 6091 7.023120 TGTAGCATTTAGGAGATATTACCCCT 58.977 38.462 0.00 0.00 0.00 4.79
5998 6092 7.253905 TGTAGCATTTAGGAGATATTACCCC 57.746 40.000 0.00 0.00 0.00 4.95
5999 6093 9.220767 CTTTGTAGCATTTAGGAGATATTACCC 57.779 37.037 0.00 0.00 0.00 3.69
6000 6094 9.220767 CCTTTGTAGCATTTAGGAGATATTACC 57.779 37.037 0.00 0.00 0.00 2.85
6001 6095 9.998106 TCCTTTGTAGCATTTAGGAGATATTAC 57.002 33.333 0.00 0.00 31.60 1.89
6074 6168 0.398696 TTTACTCCAAGCCCGAGCAA 59.601 50.000 0.00 0.00 43.56 3.91
6076 6170 1.530323 TTTTTACTCCAAGCCCGAGC 58.470 50.000 0.00 0.00 40.32 5.03
6096 6190 4.101448 GTGCTGAGCGGTGGGGAT 62.101 66.667 0.00 0.00 0.00 3.85
6104 6198 3.073735 AGAGGAGGGTGCTGAGCG 61.074 66.667 0.00 0.00 0.00 5.03
6109 6203 0.116143 AAGAGACAGAGGAGGGTGCT 59.884 55.000 0.00 0.00 0.00 4.40
6148 6259 3.164977 TGGTGGTTGAGTCGCCCA 61.165 61.111 0.00 0.00 34.09 5.36
6149 6260 2.668550 GTGGTGGTTGAGTCGCCC 60.669 66.667 1.70 0.00 34.09 6.13
6261 6373 0.614697 TGAGGAAGATGCGAGGGTGA 60.615 55.000 0.00 0.00 0.00 4.02
6265 6377 0.103937 GGAGTGAGGAAGATGCGAGG 59.896 60.000 0.00 0.00 0.00 4.63
6266 6378 0.248825 CGGAGTGAGGAAGATGCGAG 60.249 60.000 0.00 0.00 0.00 5.03
6274 6386 3.691342 CGGTGGCGGAGTGAGGAA 61.691 66.667 0.00 0.00 0.00 3.36
6312 6424 4.070552 GGAAGCCGGCGAGTCTGT 62.071 66.667 23.20 0.00 0.00 3.41
6313 6425 4.821589 GGGAAGCCGGCGAGTCTG 62.822 72.222 23.20 0.00 0.00 3.51
6373 6485 3.254654 CATACCCGCTGTCGCACG 61.255 66.667 0.00 0.00 35.30 5.34
6387 6499 1.146041 GGCAGCCATGTCCGTCATA 59.854 57.895 6.55 0.00 34.67 2.15
6397 6509 0.687354 CTATAACCTCCGGCAGCCAT 59.313 55.000 13.30 0.00 0.00 4.40
6401 6513 1.202582 CCGATCTATAACCTCCGGCAG 59.797 57.143 0.00 0.00 0.00 4.85
6404 6516 1.202582 CTGCCGATCTATAACCTCCGG 59.797 57.143 0.00 0.00 39.88 5.14
6410 6522 2.607282 CGTGGGTCTGCCGATCTATAAC 60.607 54.545 0.00 0.00 34.97 1.89
6418 6530 0.250553 ATTTTTCGTGGGTCTGCCGA 60.251 50.000 0.00 0.00 34.97 5.54
6431 6543 1.330829 GGATCCGAGCCACGATTTTTC 59.669 52.381 0.00 0.00 45.77 2.29
6438 6550 2.107141 GGAAGGATCCGAGCCACG 59.893 66.667 5.98 0.00 35.59 4.94
6474 6586 4.450122 GGACGTCGTACTCGCGCA 62.450 66.667 8.75 0.00 39.01 6.09
6496 6608 1.007038 GACGCCGTGTAACTGGACA 60.007 57.895 0.00 0.00 33.32 4.02
6501 6613 1.079405 CCCATGACGCCGTGTAACT 60.079 57.895 0.00 0.00 31.75 2.24
6515 6627 1.217779 CAAAATTTCGGCGGCCCAT 59.782 52.632 14.55 0.00 0.00 4.00
6516 6628 1.872197 CTCAAAATTTCGGCGGCCCA 61.872 55.000 14.55 0.00 0.00 5.36
6522 6634 1.732405 CGCCCTTCTCAAAATTTCGGC 60.732 52.381 0.00 0.00 0.00 5.54
6570 6682 2.432628 GAGTGTTGACCGCCCTCG 60.433 66.667 0.00 0.00 0.00 4.63
6571 6683 2.047179 GGAGTGTTGACCGCCCTC 60.047 66.667 0.00 0.00 0.00 4.30
6572 6684 2.847234 TGGAGTGTTGACCGCCCT 60.847 61.111 0.00 0.00 0.00 5.19
6576 6688 1.961277 GCCACTGGAGTGTTGACCG 60.961 63.158 0.00 0.00 44.21 4.79
6580 6692 0.604780 CCTGAGCCACTGGAGTGTTG 60.605 60.000 0.00 0.00 44.21 3.33
6583 6695 3.797331 TCCTGAGCCACTGGAGTG 58.203 61.111 0.00 0.00 45.23 3.51
6586 6698 1.610673 GTCCTCCTGAGCCACTGGA 60.611 63.158 0.00 6.87 42.83 3.86
6587 6699 2.664081 GGTCCTCCTGAGCCACTGG 61.664 68.421 0.00 0.00 35.38 4.00
6588 6700 2.985456 GGTCCTCCTGAGCCACTG 59.015 66.667 0.00 0.00 35.38 3.66
6589 6701 2.681778 CGGTCCTCCTGAGCCACT 60.682 66.667 0.00 0.00 38.27 4.00
6594 6706 2.443016 CCTCCCGGTCCTCCTGAG 60.443 72.222 0.00 0.00 33.16 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.