Multiple sequence alignment - TraesCS2D01G295900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G295900 chr2D 100.000 4971 0 0 1 4971 378063757 378058787 0.000000e+00 9180.0
1 TraesCS2D01G295900 chr2D 97.701 174 2 2 1724 1896 5107938 5108110 1.050000e-76 298.0
2 TraesCS2D01G295900 chr2D 88.125 160 15 4 2446 2603 201563467 201563310 2.360000e-43 187.0
3 TraesCS2D01G295900 chr2A 96.336 1501 44 5 2999 4488 512244510 512243010 0.000000e+00 2457.0
4 TraesCS2D01G295900 chr2A 90.283 1482 79 24 1 1426 512247320 512245848 0.000000e+00 1879.0
5 TraesCS2D01G295900 chr2A 94.712 416 15 4 2595 3003 512245001 512244586 1.510000e-179 640.0
6 TraesCS2D01G295900 chr2A 95.480 177 7 1 1459 1635 512245697 512245522 1.050000e-71 281.0
7 TraesCS2D01G295900 chr2A 94.030 134 7 1 2440 2573 235674678 235674546 8.440000e-48 202.0
8 TraesCS2D01G295900 chr2A 87.838 74 2 2 1657 1730 512245528 512245462 4.130000e-11 80.5
9 TraesCS2D01G295900 chr2B 95.327 963 23 3 3533 4488 449170580 449169633 0.000000e+00 1509.0
10 TraesCS2D01G295900 chr2B 90.696 1150 61 16 521 1635 449173458 449172320 0.000000e+00 1489.0
11 TraesCS2D01G295900 chr2B 92.734 523 22 10 1 519 449218586 449218076 0.000000e+00 741.0
12 TraesCS2D01G295900 chr2B 90.000 500 38 10 3006 3498 449171271 449170777 1.950000e-178 636.0
13 TraesCS2D01G295900 chr2B 93.814 388 14 5 2595 2980 449171745 449171366 4.320000e-160 575.0
14 TraesCS2D01G295900 chr2B 95.420 131 5 1 2443 2573 736245050 736244921 1.810000e-49 207.0
15 TraesCS2D01G295900 chr2B 100.000 31 0 0 2572 2602 239870862 239870892 1.930000e-04 58.4
16 TraesCS2D01G295900 chr4D 96.566 495 5 1 4489 4971 274469652 274469158 0.000000e+00 809.0
17 TraesCS2D01G295900 chr4D 86.738 279 37 0 2629 2907 455345293 455345015 1.340000e-80 311.0
18 TraesCS2D01G295900 chr4D 97.159 176 3 2 1733 1908 67327648 67327475 3.760000e-76 296.0
19 TraesCS2D01G295900 chr4D 90.749 227 14 6 1674 1897 113186926 113187148 3.760000e-76 296.0
20 TraesCS2D01G295900 chr4D 96.111 180 6 1 1729 1907 509818873 509819052 4.870000e-75 292.0
21 TraesCS2D01G295900 chr4D 87.117 163 19 2 3335 3496 455342745 455342584 3.060000e-42 183.0
22 TraesCS2D01G295900 chr7D 94.758 496 13 2 4489 4971 440004549 440004054 0.000000e+00 760.0
23 TraesCS2D01G295900 chr7D 96.809 282 8 1 4489 4769 28853994 28853713 2.090000e-128 470.0
24 TraesCS2D01G295900 chr7D 91.928 223 3 3 4762 4969 28853693 28853471 1.050000e-76 298.0
25 TraesCS2D01G295900 chrUn 88.910 523 18 15 4488 4971 18797380 18797901 4.260000e-170 608.0
26 TraesCS2D01G295900 chrUn 93.357 286 14 3 4489 4769 34133122 34133407 7.700000e-113 418.0
27 TraesCS2D01G295900 chrUn 89.640 222 8 8 4762 4968 34133427 34133648 8.200000e-68 268.0
28 TraesCS2D01G295900 chrUn 94.531 128 6 1 2446 2573 31528260 31528134 3.930000e-46 196.0
29 TraesCS2D01G295900 chrUn 100.000 31 0 0 2572 2602 100214707 100214677 1.930000e-04 58.4
30 TraesCS2D01G295900 chr6D 88.910 523 17 11 4489 4971 15380106 15379585 1.530000e-169 606.0
31 TraesCS2D01G295900 chr6D 97.688 173 4 0 1728 1900 85165860 85165688 1.050000e-76 298.0
32 TraesCS2D01G295900 chr7A 84.586 519 41 25 4488 4971 708601453 708600939 3.480000e-131 479.0
33 TraesCS2D01G295900 chr1D 96.099 282 10 1 4489 4769 483047454 483047735 4.530000e-125 459.0
34 TraesCS2D01G295900 chr1D 92.000 225 3 8 4762 4971 483047755 483047979 8.090000e-78 302.0
35 TraesCS2D01G295900 chr1D 100.000 50 0 0 4922 4971 481957602 481957553 5.300000e-15 93.5
36 TraesCS2D01G295900 chr1B 95.374 281 12 1 4490 4769 449736154 449735874 3.530000e-121 446.0
37 TraesCS2D01G295900 chr1B 94.700 283 12 3 4489 4769 54129638 54129919 2.120000e-118 436.0
38 TraesCS2D01G295900 chr1B 89.200 250 20 6 3006 3252 273386714 273386959 6.250000e-79 305.0
39 TraesCS2D01G295900 chr1B 87.454 271 14 8 4717 4971 449735896 449735630 1.350000e-75 294.0
40 TraesCS2D01G295900 chr1B 89.823 226 13 5 2757 2980 273386402 273386619 1.050000e-71 281.0
41 TraesCS2D01G295900 chr1B 89.732 224 8 3 4762 4970 54129939 54130162 6.340000e-69 272.0
42 TraesCS2D01G295900 chr1B 94.776 134 6 1 2440 2573 28563391 28563523 1.810000e-49 207.0
43 TraesCS2D01G295900 chr1B 97.059 34 0 1 2572 2604 156857820 156857787 6.950000e-04 56.5
44 TraesCS2D01G295900 chr6B 90.400 250 17 6 3006 3252 608039605 608039850 6.210000e-84 322.0
45 TraesCS2D01G295900 chr6B 89.778 225 15 4 2757 2980 608039293 608039510 1.050000e-71 281.0
46 TraesCS2D01G295900 chr6B 91.892 74 5 1 2051 2123 75651581 75651508 8.800000e-18 102.0
47 TraesCS2D01G295900 chr3D 98.256 172 3 0 1725 1896 402850804 402850633 8.090000e-78 302.0
48 TraesCS2D01G295900 chr3D 97.688 173 2 2 1725 1896 329442134 329441963 3.760000e-76 296.0
49 TraesCS2D01G295900 chr3D 92.308 39 3 0 2562 2600 523253419 523253457 6.950000e-04 56.5
50 TraesCS2D01G295900 chr3B 88.800 250 21 5 3006 3252 803125482 803125727 2.910000e-77 300.0
51 TraesCS2D01G295900 chr3B 88.496 226 17 4 2757 2980 803125169 803125387 1.060000e-66 265.0
52 TraesCS2D01G295900 chr3B 100.000 30 0 0 4363 4392 743169309 743169280 6.950000e-04 56.5
53 TraesCS2D01G295900 chr5D 98.795 166 2 0 1732 1897 29505417 29505252 3.760000e-76 296.0
54 TraesCS2D01G295900 chr5D 97.143 175 3 2 1733 1905 466142354 466142528 1.350000e-75 294.0
55 TraesCS2D01G295900 chr5D 89.241 158 14 2 2443 2600 441116929 441117083 1.410000e-45 195.0
56 TraesCS2D01G295900 chr5D 93.694 111 4 3 79 187 557158877 557158768 3.980000e-36 163.0
57 TraesCS2D01G295900 chr5D 100.000 53 0 0 4919 4971 7032531 7032583 1.140000e-16 99.0
58 TraesCS2D01G295900 chr5B 91.250 160 10 4 2442 2600 84881206 84881050 1.080000e-51 215.0
59 TraesCS2D01G295900 chr5B 92.806 139 8 2 2436 2573 577516039 577516176 3.030000e-47 200.0
60 TraesCS2D01G295900 chr5B 100.000 28 0 0 1113 1140 686228054 686228027 9.000000e-03 52.8
61 TraesCS2D01G295900 chr7B 89.375 160 11 6 2446 2600 296267142 296267300 3.930000e-46 196.0
62 TraesCS2D01G295900 chr4A 80.687 233 31 9 1962 2180 617909003 617909235 8.560000e-38 169.0
63 TraesCS2D01G295900 chr5A 100.000 29 0 0 2572 2600 573563590 573563562 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G295900 chr2D 378058787 378063757 4970 True 9180.00 9180 100.00000 1 4971 1 chr2D.!!$R2 4970
1 TraesCS2D01G295900 chr2A 512243010 512247320 4310 True 1067.50 2457 92.92980 1 4488 5 chr2A.!!$R2 4487
2 TraesCS2D01G295900 chr2B 449169633 449173458 3825 True 1052.25 1509 92.45925 521 4488 4 chr2B.!!$R3 3967
3 TraesCS2D01G295900 chr2B 449218076 449218586 510 True 741.00 741 92.73400 1 519 1 chr2B.!!$R1 518
4 TraesCS2D01G295900 chr4D 455342584 455345293 2709 True 247.00 311 86.92750 2629 3496 2 chr4D.!!$R3 867
5 TraesCS2D01G295900 chr7D 28853471 28853994 523 True 384.00 470 94.36850 4489 4969 2 chr7D.!!$R2 480
6 TraesCS2D01G295900 chrUn 18797380 18797901 521 False 608.00 608 88.91000 4488 4971 1 chrUn.!!$F1 483
7 TraesCS2D01G295900 chrUn 34133122 34133648 526 False 343.00 418 91.49850 4489 4968 2 chrUn.!!$F2 479
8 TraesCS2D01G295900 chr6D 15379585 15380106 521 True 606.00 606 88.91000 4489 4971 1 chr6D.!!$R1 482
9 TraesCS2D01G295900 chr7A 708600939 708601453 514 True 479.00 479 84.58600 4488 4971 1 chr7A.!!$R1 483
10 TraesCS2D01G295900 chr1D 483047454 483047979 525 False 380.50 459 94.04950 4489 4971 2 chr1D.!!$F1 482
11 TraesCS2D01G295900 chr1B 449735630 449736154 524 True 370.00 446 91.41400 4490 4971 2 chr1B.!!$R2 481
12 TraesCS2D01G295900 chr1B 54129638 54130162 524 False 354.00 436 92.21600 4489 4970 2 chr1B.!!$F2 481
13 TraesCS2D01G295900 chr1B 273386402 273386959 557 False 293.00 305 89.51150 2757 3252 2 chr1B.!!$F3 495
14 TraesCS2D01G295900 chr6B 608039293 608039850 557 False 301.50 322 90.08900 2757 3252 2 chr6B.!!$F1 495
15 TraesCS2D01G295900 chr3B 803125169 803125727 558 False 282.50 300 88.64800 2757 3252 2 chr3B.!!$F1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 669 0.108377 TCCAACACATGTCGATCGGG 60.108 55.0 16.41 5.07 0.00 5.14 F
1425 1504 0.179156 CCGTCGGTGCGTACTTACAT 60.179 55.0 2.08 0.00 0.00 2.29 F
2214 2417 0.109412 GTCTAACCACAGGTCGGTCG 60.109 60.0 0.00 0.00 34.99 4.79 F
2412 2630 0.029567 GTCTGACTACCGATGCCTCG 59.970 60.0 4.21 4.21 44.62 4.63 F
3624 5906 0.250295 CCTTGAAGGTCCGAACAGCA 60.250 55.0 2.25 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2179 0.027979 CATTATTCGTGCACAGGCCG 59.972 55.000 18.64 1.94 40.13 6.13 R
2290 2493 1.014044 ACGTACGTGCCTGCTTCATG 61.014 55.000 22.14 0.00 0.00 3.07 R
3624 5906 0.749454 GTGAGCTCATTTCCCCGCAT 60.749 55.000 21.47 0.00 0.00 4.73 R
3642 5924 1.216710 GAGCGCCTTAGCAGAGTGT 59.783 57.895 2.29 0.00 39.83 3.55 R
4745 7053 0.748367 GGAGGGACCCGATTGCTTTC 60.748 60.000 4.40 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 139 5.410746 TGCTTTTGTGTTTTCAAATGAAGCA 59.589 32.000 10.75 10.75 41.78 3.91
142 144 4.328440 TGTGTTTTCAAATGAAGCAAACGG 59.672 37.500 0.00 0.00 35.21 4.44
217 220 2.537401 GATACTCTACTTTTGGCGCGT 58.463 47.619 8.43 0.00 0.00 6.01
294 297 2.512286 GTACGGCCCGGGTAAAGC 60.512 66.667 24.63 6.74 0.00 3.51
314 319 1.858458 CCACTCACGCGTATACCATTG 59.142 52.381 13.44 2.23 0.00 2.82
359 370 4.179298 GTTTTACCTCATCCGACACTACC 58.821 47.826 0.00 0.00 0.00 3.18
372 383 3.366396 GACACTACCCTCATTCTCCTCA 58.634 50.000 0.00 0.00 0.00 3.86
539 553 9.140286 CAAATGACAAGTTATCGAGAGTTTCTA 57.860 33.333 0.00 0.00 0.00 2.10
560 574 0.951558 AACAAACACGCCCAAGCTAG 59.048 50.000 0.00 0.00 36.60 3.42
596 610 4.419522 ACACCAACGCAAAGTTCATATC 57.580 40.909 0.00 0.00 42.02 1.63
630 669 0.108377 TCCAACACATGTCGATCGGG 60.108 55.000 16.41 5.07 0.00 5.14
694 737 0.876777 ACGCAACCGATCGAACACAA 60.877 50.000 18.66 0.00 38.29 3.33
695 738 0.179250 CGCAACCGATCGAACACAAG 60.179 55.000 18.66 0.00 36.29 3.16
860 922 2.032799 TGCTACGCTTTTTGTTCCACTG 59.967 45.455 0.00 0.00 0.00 3.66
1000 1076 2.844362 CCGAGCCATAGCCTCCCA 60.844 66.667 0.00 0.00 41.25 4.37
1073 1152 1.881925 GCTGCATATCCGCCACCATTA 60.882 52.381 0.00 0.00 0.00 1.90
1115 1194 4.147449 CCGCATCAGGGTGAGCGA 62.147 66.667 16.88 0.00 42.35 4.93
1209 1288 2.046988 TCGGTGCTCGTCGGTCTA 60.047 61.111 0.00 0.00 40.32 2.59
1212 1291 1.065928 GGTGCTCGTCGGTCTATGG 59.934 63.158 0.00 0.00 0.00 2.74
1332 1411 2.095053 GGTGTCCGTCTTCTACTACGTC 59.905 54.545 0.00 0.00 37.40 4.34
1341 1420 1.297451 CTACTACGTCACGCCGCTC 60.297 63.158 0.00 0.00 0.00 5.03
1423 1502 1.210155 ACCGTCGGTGCGTACTTAC 59.790 57.895 18.08 1.38 32.98 2.34
1424 1503 1.209898 CCGTCGGTGCGTACTTACA 59.790 57.895 2.08 0.00 0.00 2.41
1425 1504 0.179156 CCGTCGGTGCGTACTTACAT 60.179 55.000 2.08 0.00 0.00 2.29
1427 1506 1.319374 CGTCGGTGCGTACTTACATTG 59.681 52.381 3.01 0.00 0.00 2.82
1429 1508 3.184541 GTCGGTGCGTACTTACATTGAT 58.815 45.455 3.01 0.00 0.00 2.57
1431 1510 4.092383 GTCGGTGCGTACTTACATTGATTT 59.908 41.667 3.01 0.00 0.00 2.17
1433 1512 5.517411 TCGGTGCGTACTTACATTGATTTAG 59.483 40.000 3.01 0.00 0.00 1.85
1435 1514 6.507456 CGGTGCGTACTTACATTGATTTAGTC 60.507 42.308 3.01 0.00 0.00 2.59
1437 1516 6.034256 GTGCGTACTTACATTGATTTAGTCGT 59.966 38.462 0.00 0.00 0.00 4.34
1442 1521 7.539712 ACTTACATTGATTTAGTCGTGGATG 57.460 36.000 0.00 0.00 0.00 3.51
1444 1523 7.606456 ACTTACATTGATTTAGTCGTGGATGTT 59.394 33.333 0.00 0.00 0.00 2.71
1447 1526 7.083858 ACATTGATTTAGTCGTGGATGTTTTG 58.916 34.615 0.00 0.00 0.00 2.44
1449 1528 3.529634 TTTAGTCGTGGATGTTTTGCG 57.470 42.857 0.00 0.00 0.00 4.85
1453 1649 1.212490 CGTGGATGTTTTGCGGCAT 59.788 52.632 2.28 0.00 0.00 4.40
1456 1652 0.678395 TGGATGTTTTGCGGCATGTT 59.322 45.000 2.28 0.00 0.00 2.71
1457 1653 1.070038 GGATGTTTTGCGGCATGTTG 58.930 50.000 2.28 0.00 0.00 3.33
1472 1668 1.200839 GTTGCTGACGTACGTGCAC 59.799 57.895 27.00 19.32 35.01 4.57
1475 1671 2.728015 CTGACGTACGTGCACGCA 60.728 61.111 37.35 24.66 45.77 5.24
1560 1756 1.153489 CGTGGGAGCTCATCAGGTG 60.153 63.158 17.19 2.92 0.00 4.00
1635 1831 2.148916 TGCTAGGTACGCATGCATAC 57.851 50.000 19.57 17.37 31.40 2.39
1636 1832 1.270094 TGCTAGGTACGCATGCATACC 60.270 52.381 30.79 30.79 41.13 2.73
1637 1833 1.939838 GCTAGGTACGCATGCATACCC 60.940 57.143 33.20 18.28 41.67 3.69
1638 1834 1.343142 CTAGGTACGCATGCATACCCA 59.657 52.381 33.20 22.65 41.67 4.51
1639 1835 0.544223 AGGTACGCATGCATACCCAA 59.456 50.000 33.20 0.00 41.67 4.12
1640 1836 0.944386 GGTACGCATGCATACCCAAG 59.056 55.000 28.50 7.51 35.71 3.61
1641 1837 1.663695 GTACGCATGCATACCCAAGT 58.336 50.000 19.57 7.16 0.00 3.16
1642 1838 2.014128 GTACGCATGCATACCCAAGTT 58.986 47.619 19.57 0.00 0.00 2.66
1643 1839 1.094785 ACGCATGCATACCCAAGTTC 58.905 50.000 19.57 0.00 0.00 3.01
1644 1840 0.381801 CGCATGCATACCCAAGTTCC 59.618 55.000 19.57 0.00 0.00 3.62
1645 1841 1.473258 GCATGCATACCCAAGTTCCA 58.527 50.000 14.21 0.00 0.00 3.53
1646 1842 1.824230 GCATGCATACCCAAGTTCCAA 59.176 47.619 14.21 0.00 0.00 3.53
1647 1843 2.417243 GCATGCATACCCAAGTTCCAAC 60.417 50.000 14.21 0.00 0.00 3.77
1648 1844 2.969821 TGCATACCCAAGTTCCAACT 57.030 45.000 0.00 0.00 42.04 3.16
1650 1846 4.374689 TGCATACCCAAGTTCCAACTTA 57.625 40.909 4.38 0.00 46.89 2.24
1651 1847 4.929479 TGCATACCCAAGTTCCAACTTAT 58.071 39.130 4.38 0.00 46.89 1.73
1652 1848 5.329399 TGCATACCCAAGTTCCAACTTATT 58.671 37.500 4.38 0.00 46.89 1.40
1653 1849 5.777732 TGCATACCCAAGTTCCAACTTATTT 59.222 36.000 4.38 0.00 46.89 1.40
1654 1850 6.268847 TGCATACCCAAGTTCCAACTTATTTT 59.731 34.615 4.38 0.00 46.89 1.82
1655 1851 7.158697 GCATACCCAAGTTCCAACTTATTTTT 58.841 34.615 4.38 0.00 46.89 1.94
1656 1852 8.308207 GCATACCCAAGTTCCAACTTATTTTTA 58.692 33.333 4.38 0.00 46.89 1.52
1659 1855 7.158697 ACCCAAGTTCCAACTTATTTTTATGC 58.841 34.615 4.38 0.00 46.89 3.14
1660 1856 7.158021 CCCAAGTTCCAACTTATTTTTATGCA 58.842 34.615 4.38 0.00 46.89 3.96
1661 1857 7.823799 CCCAAGTTCCAACTTATTTTTATGCAT 59.176 33.333 3.79 3.79 46.89 3.96
1662 1858 8.658609 CCAAGTTCCAACTTATTTTTATGCATG 58.341 33.333 10.16 0.00 46.89 4.06
1663 1859 9.206870 CAAGTTCCAACTTATTTTTATGCATGT 57.793 29.630 10.16 0.00 46.89 3.21
1732 1935 9.924010 AGTATACTTGGACTTGTCTTACTAGAT 57.076 33.333 0.00 0.00 31.86 1.98
1736 1939 8.283699 ACTTGGACTTGTCTTACTAGATACTC 57.716 38.462 0.00 0.00 31.86 2.59
1738 1941 6.127793 TGGACTTGTCTTACTAGATACTCCC 58.872 44.000 0.00 0.00 31.86 4.30
1741 1944 6.367161 ACTTGTCTTACTAGATACTCCCTCC 58.633 44.000 0.00 0.00 31.86 4.30
1742 1945 4.970711 TGTCTTACTAGATACTCCCTCCG 58.029 47.826 0.00 0.00 31.86 4.63
1743 1946 4.411540 TGTCTTACTAGATACTCCCTCCGT 59.588 45.833 0.00 0.00 31.86 4.69
1744 1947 4.996758 GTCTTACTAGATACTCCCTCCGTC 59.003 50.000 0.00 0.00 31.86 4.79
1745 1948 2.955342 ACTAGATACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
1746 1949 1.424684 ACTAGATACTCCCTCCGTCCC 59.575 57.143 0.00 0.00 0.00 4.46
1747 1950 1.706305 CTAGATACTCCCTCCGTCCCT 59.294 57.143 0.00 0.00 0.00 4.20
1749 1952 2.141911 AGATACTCCCTCCGTCCCTAA 58.858 52.381 0.00 0.00 0.00 2.69
1750 1953 2.517127 AGATACTCCCTCCGTCCCTAAA 59.483 50.000 0.00 0.00 0.00 1.85
1751 1954 3.142407 AGATACTCCCTCCGTCCCTAAAT 59.858 47.826 0.00 0.00 0.00 1.40
1752 1955 4.356190 AGATACTCCCTCCGTCCCTAAATA 59.644 45.833 0.00 0.00 0.00 1.40
1753 1956 2.675583 ACTCCCTCCGTCCCTAAATAC 58.324 52.381 0.00 0.00 0.00 1.89
1754 1957 2.246849 ACTCCCTCCGTCCCTAAATACT 59.753 50.000 0.00 0.00 0.00 2.12
1755 1958 3.306613 CTCCCTCCGTCCCTAAATACTT 58.693 50.000 0.00 0.00 0.00 2.24
1756 1959 3.036091 TCCCTCCGTCCCTAAATACTTG 58.964 50.000 0.00 0.00 0.00 3.16
1757 1960 2.770232 CCCTCCGTCCCTAAATACTTGT 59.230 50.000 0.00 0.00 0.00 3.16
1758 1961 3.181468 CCCTCCGTCCCTAAATACTTGTC 60.181 52.174 0.00 0.00 0.00 3.18
1759 1962 3.705072 CCTCCGTCCCTAAATACTTGTCT 59.295 47.826 0.00 0.00 0.00 3.41
1760 1963 4.161754 CCTCCGTCCCTAAATACTTGTCTT 59.838 45.833 0.00 0.00 0.00 3.01
1761 1964 5.338137 CCTCCGTCCCTAAATACTTGTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
1762 1965 5.727434 TCCGTCCCTAAATACTTGTCTTTC 58.273 41.667 0.00 0.00 0.00 2.62
1763 1966 5.482878 TCCGTCCCTAAATACTTGTCTTTCT 59.517 40.000 0.00 0.00 0.00 2.52
1764 1967 6.664816 TCCGTCCCTAAATACTTGTCTTTCTA 59.335 38.462 0.00 0.00 0.00 2.10
1765 1968 6.979238 CCGTCCCTAAATACTTGTCTTTCTAG 59.021 42.308 0.00 0.00 0.00 2.43
1766 1969 6.979238 CGTCCCTAAATACTTGTCTTTCTAGG 59.021 42.308 0.00 0.00 0.00 3.02
1767 1970 6.762187 GTCCCTAAATACTTGTCTTTCTAGGC 59.238 42.308 0.00 0.00 0.00 3.93
1768 1971 6.442564 TCCCTAAATACTTGTCTTTCTAGGCA 59.557 38.462 0.00 0.00 33.22 4.75
1769 1972 7.127339 TCCCTAAATACTTGTCTTTCTAGGCAT 59.873 37.037 0.00 0.00 35.56 4.40
1770 1973 7.775561 CCCTAAATACTTGTCTTTCTAGGCATT 59.224 37.037 0.00 0.00 35.56 3.56
1771 1974 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1773 1976 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1774 1977 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1775 1978 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
1776 1979 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
1777 1980 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
1778 1981 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
1779 1982 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
1780 1983 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1781 1984 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1782 1985 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1783 1986 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1784 1987 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1785 1988 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1786 1989 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1787 1990 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1788 1991 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1789 1992 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1790 1993 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1791 1994 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
1792 1995 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1793 1996 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1794 1997 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
1795 1998 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
1796 1999 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
1812 2015 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
1813 2016 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
1854 2057 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
1855 2058 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
1856 2059 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
1857 2060 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
1858 2061 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
1859 2062 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
1860 2063 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
1861 2064 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
1862 2065 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
1863 2066 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
1864 2067 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
1865 2068 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
1866 2069 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
1867 2070 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
1868 2071 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
1869 2072 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
1870 2073 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
1871 2074 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
1872 2075 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
1873 2076 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
1874 2077 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
1875 2078 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
1876 2079 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
1877 2080 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
1878 2081 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
1879 2082 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1880 2083 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1882 2085 9.959721 AAATGCCTAGAAAGACAAGTATTTAGA 57.040 29.630 0.00 0.00 0.00 2.10
1883 2086 9.959721 AATGCCTAGAAAGACAAGTATTTAGAA 57.040 29.630 0.00 0.00 0.00 2.10
1884 2087 9.959721 ATGCCTAGAAAGACAAGTATTTAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
1885 2088 9.216117 TGCCTAGAAAGACAAGTATTTAGAAAC 57.784 33.333 0.00 0.00 0.00 2.78
1886 2089 8.381387 GCCTAGAAAGACAAGTATTTAGAAACG 58.619 37.037 0.00 0.00 0.00 3.60
1887 2090 8.870879 CCTAGAAAGACAAGTATTTAGAAACGG 58.129 37.037 0.00 0.00 0.00 4.44
1888 2091 9.635520 CTAGAAAGACAAGTATTTAGAAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
1889 2092 8.535690 AGAAAGACAAGTATTTAGAAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
1890 2093 7.603024 AGAAAGACAAGTATTTAGAAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
1891 2094 5.731591 AGACAAGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
1892 2095 5.482878 AGACAAGTATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
1893 2096 5.731591 ACAAGTATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
1899 2102 6.809976 ATTTAGAAACGGAGGGAGTAGAAT 57.190 37.500 0.00 0.00 0.00 2.40
1908 2111 5.104485 ACGGAGGGAGTAGAATTATTTTGCT 60.104 40.000 0.00 0.00 0.00 3.91
1934 2137 3.997762 TGCATGCAAAAGCAAGAGATTT 58.002 36.364 20.30 0.00 37.90 2.17
1937 2140 3.665745 TGCAAAAGCAAGAGATTTCCC 57.334 42.857 0.00 0.00 30.96 3.97
1938 2141 2.299867 TGCAAAAGCAAGAGATTTCCCC 59.700 45.455 0.00 0.00 30.96 4.81
1939 2142 2.354103 GCAAAAGCAAGAGATTTCCCCC 60.354 50.000 0.00 0.00 30.96 5.40
1940 2143 2.899256 CAAAAGCAAGAGATTTCCCCCA 59.101 45.455 0.00 0.00 30.96 4.96
1942 2145 4.608170 AAAGCAAGAGATTTCCCCCATA 57.392 40.909 0.00 0.00 0.00 2.74
1943 2146 4.608170 AAGCAAGAGATTTCCCCCATAA 57.392 40.909 0.00 0.00 0.00 1.90
1944 2147 4.608170 AGCAAGAGATTTCCCCCATAAA 57.392 40.909 0.00 0.00 0.00 1.40
1946 2149 5.341169 AGCAAGAGATTTCCCCCATAAAAA 58.659 37.500 0.00 0.00 0.00 1.94
1969 2172 7.848223 AAAAGAGATTGTTTTGAAAAGGTGG 57.152 32.000 0.00 0.00 0.00 4.61
1970 2173 6.790232 AAGAGATTGTTTTGAAAAGGTGGA 57.210 33.333 0.00 0.00 0.00 4.02
1971 2174 6.983906 AGAGATTGTTTTGAAAAGGTGGAT 57.016 33.333 0.00 0.00 0.00 3.41
1972 2175 8.477419 AAGAGATTGTTTTGAAAAGGTGGATA 57.523 30.769 0.00 0.00 0.00 2.59
1973 2176 8.477419 AGAGATTGTTTTGAAAAGGTGGATAA 57.523 30.769 0.00 0.00 0.00 1.75
1974 2177 8.360390 AGAGATTGTTTTGAAAAGGTGGATAAC 58.640 33.333 0.00 0.00 0.00 1.89
1982 2185 2.192175 GGTGGATAACCCGGCCTG 59.808 66.667 0.00 0.00 44.02 4.85
1983 2186 2.676265 GGTGGATAACCCGGCCTGT 61.676 63.158 0.00 0.00 44.02 4.00
1984 2187 1.451387 GTGGATAACCCGGCCTGTG 60.451 63.158 0.00 0.00 37.93 3.66
1985 2188 2.516225 GGATAACCCGGCCTGTGC 60.516 66.667 0.00 0.00 0.00 4.57
1986 2189 2.270850 GATAACCCGGCCTGTGCA 59.729 61.111 0.00 0.00 40.13 4.57
2005 2208 2.351253 GCACGAATAATGCACACAACCA 60.351 45.455 0.00 0.00 42.88 3.67
2038 2241 5.605564 AAAACAAAAACCAGCAACTGAAC 57.394 34.783 0.00 0.00 32.44 3.18
2050 2253 2.794350 GCAACTGAACAAATTTGACCCG 59.206 45.455 24.64 13.09 0.00 5.28
2086 2289 1.080772 TGTGCCTCGCGACAGTAAG 60.081 57.895 3.71 0.00 0.00 2.34
2089 2292 1.516603 GCCTCGCGACAGTAAGTCC 60.517 63.158 3.71 0.00 44.66 3.85
2091 2294 0.456312 CCTCGCGACAGTAAGTCCAC 60.456 60.000 3.71 0.00 44.66 4.02
2116 2319 6.126883 CCAGACAACCACTAACCCTATGATAA 60.127 42.308 0.00 0.00 0.00 1.75
2119 2322 8.047310 AGACAACCACTAACCCTATGATAAAAG 58.953 37.037 0.00 0.00 0.00 2.27
2120 2323 7.924541 ACAACCACTAACCCTATGATAAAAGA 58.075 34.615 0.00 0.00 0.00 2.52
2121 2324 7.827729 ACAACCACTAACCCTATGATAAAAGAC 59.172 37.037 0.00 0.00 0.00 3.01
2122 2325 7.504926 ACCACTAACCCTATGATAAAAGACA 57.495 36.000 0.00 0.00 0.00 3.41
2123 2326 7.565680 ACCACTAACCCTATGATAAAAGACAG 58.434 38.462 0.00 0.00 0.00 3.51
2131 2334 8.793592 ACCCTATGATAAAAGACAGAAACAAAC 58.206 33.333 0.00 0.00 0.00 2.93
2132 2335 7.962918 CCCTATGATAAAAGACAGAAACAAACG 59.037 37.037 0.00 0.00 0.00 3.60
2133 2336 8.717821 CCTATGATAAAAGACAGAAACAAACGA 58.282 33.333 0.00 0.00 0.00 3.85
2153 2356 6.680874 ACGATACACAACTCCTAGACTAAG 57.319 41.667 0.00 0.00 0.00 2.18
2161 2364 5.307196 ACAACTCCTAGACTAAGCCTTCAAA 59.693 40.000 0.00 0.00 0.00 2.69
2170 2373 7.646548 AGACTAAGCCTTCAAAAAGAAAACT 57.353 32.000 0.00 0.00 35.40 2.66
2187 2390 0.318699 ACTCCACACGTGTGTCGATG 60.319 55.000 38.40 26.17 42.83 3.84
2188 2391 1.006688 TCCACACGTGTGTCGATGG 60.007 57.895 38.40 26.24 42.83 3.51
2192 2395 0.317160 ACACGTGTGTCGATGGTGAT 59.683 50.000 22.71 0.00 40.24 3.06
2194 2397 0.317160 ACGTGTGTCGATGGTGATGT 59.683 50.000 0.00 0.00 42.86 3.06
2204 2407 2.930040 CGATGGTGATGTGTCTAACCAC 59.070 50.000 0.00 0.00 45.09 4.16
2212 2415 0.677842 GTGTCTAACCACAGGTCGGT 59.322 55.000 0.00 0.00 38.85 4.69
2213 2416 0.963962 TGTCTAACCACAGGTCGGTC 59.036 55.000 0.00 0.00 34.99 4.79
2214 2417 0.109412 GTCTAACCACAGGTCGGTCG 60.109 60.000 0.00 0.00 34.99 4.79
2215 2418 1.214589 CTAACCACAGGTCGGTCGG 59.785 63.158 0.00 0.00 34.99 4.79
2216 2419 1.228521 TAACCACAGGTCGGTCGGA 60.229 57.895 0.00 0.00 34.99 4.55
2217 2420 0.612732 TAACCACAGGTCGGTCGGAT 60.613 55.000 0.00 0.00 34.99 4.18
2218 2421 1.477685 AACCACAGGTCGGTCGGATT 61.478 55.000 0.00 0.00 34.99 3.01
2219 2422 0.612732 ACCACAGGTCGGTCGGATTA 60.613 55.000 0.00 0.00 27.30 1.75
2220 2423 0.533491 CCACAGGTCGGTCGGATTAA 59.467 55.000 0.00 0.00 0.00 1.40
2221 2424 1.066716 CCACAGGTCGGTCGGATTAAA 60.067 52.381 0.00 0.00 0.00 1.52
2222 2425 2.613474 CCACAGGTCGGTCGGATTAAAA 60.613 50.000 0.00 0.00 0.00 1.52
2223 2426 3.068560 CACAGGTCGGTCGGATTAAAAA 58.931 45.455 0.00 0.00 0.00 1.94
2264 2467 3.713826 TTTTTCATCCCTAAGCCGAGT 57.286 42.857 0.00 0.00 0.00 4.18
2268 2471 2.184533 TCATCCCTAAGCCGAGTTTCA 58.815 47.619 0.00 0.00 0.00 2.69
2274 2477 3.545703 CCTAAGCCGAGTTTCAATCCAT 58.454 45.455 0.00 0.00 0.00 3.41
2277 2480 2.359900 AGCCGAGTTTCAATCCATCAC 58.640 47.619 0.00 0.00 0.00 3.06
2280 2483 3.347216 CCGAGTTTCAATCCATCACCTT 58.653 45.455 0.00 0.00 0.00 3.50
2284 2487 4.990526 AGTTTCAATCCATCACCTTCAGT 58.009 39.130 0.00 0.00 0.00 3.41
2288 2491 5.762179 TCAATCCATCACCTTCAGTAAGT 57.238 39.130 0.00 0.00 0.00 2.24
2290 2493 6.640518 TCAATCCATCACCTTCAGTAAGTAC 58.359 40.000 0.00 0.00 0.00 2.73
2292 2495 6.814954 ATCCATCACCTTCAGTAAGTACAT 57.185 37.500 0.00 0.00 0.00 2.29
2305 2508 0.321671 AGTACATGAAGCAGGCACGT 59.678 50.000 0.00 0.00 0.00 4.49
2309 2512 1.014044 CATGAAGCAGGCACGTACGT 61.014 55.000 16.72 16.72 0.00 3.57
2326 2529 7.065283 CACGTACGTGTCGACATAATCTAATA 58.935 38.462 34.48 3.11 40.91 0.98
2353 2556 6.546395 AGATCTTATGTTTTCATTGACGTGC 58.454 36.000 0.00 0.00 41.25 5.34
2355 2558 5.448438 TCTTATGTTTTCATTGACGTGCAC 58.552 37.500 6.82 6.82 41.25 4.57
2356 2559 3.706802 ATGTTTTCATTGACGTGCACA 57.293 38.095 18.64 0.00 37.19 4.57
2357 2560 3.706802 TGTTTTCATTGACGTGCACAT 57.293 38.095 18.64 0.00 0.00 3.21
2358 2561 4.820284 TGTTTTCATTGACGTGCACATA 57.180 36.364 18.64 0.00 0.00 2.29
2360 2563 5.767269 TGTTTTCATTGACGTGCACATATT 58.233 33.333 18.64 0.00 0.00 1.28
2361 2564 5.855925 TGTTTTCATTGACGTGCACATATTC 59.144 36.000 18.64 7.67 0.00 1.75
2364 2567 5.408204 TCATTGACGTGCACATATTCATC 57.592 39.130 18.64 2.88 0.00 2.92
2366 2569 5.234972 TCATTGACGTGCACATATTCATCTC 59.765 40.000 18.64 0.00 0.00 2.75
2373 2584 4.815308 GTGCACATATTCATCTCTGAAGCT 59.185 41.667 13.17 0.00 44.32 3.74
2388 2599 4.713814 TCTGAAGCTGTCTCTACCATCATT 59.286 41.667 0.00 0.00 0.00 2.57
2390 2601 5.809001 TGAAGCTGTCTCTACCATCATTTT 58.191 37.500 0.00 0.00 0.00 1.82
2412 2630 0.029567 GTCTGACTACCGATGCCTCG 59.970 60.000 4.21 4.21 44.62 4.63
2447 2696 4.448060 CCTTGAACCGACAAAGAGAACTAC 59.552 45.833 0.00 0.00 0.00 2.73
2448 2697 4.931661 TGAACCGACAAAGAGAACTACT 57.068 40.909 0.00 0.00 0.00 2.57
2449 2698 4.868067 TGAACCGACAAAGAGAACTACTC 58.132 43.478 0.00 0.00 45.22 2.59
2450 2699 3.938289 ACCGACAAAGAGAACTACTCC 57.062 47.619 0.00 0.00 45.96 3.85
2451 2700 2.561858 ACCGACAAAGAGAACTACTCCC 59.438 50.000 0.00 0.00 45.96 4.30
2452 2701 2.826725 CCGACAAAGAGAACTACTCCCT 59.173 50.000 0.00 0.00 45.96 4.20
2453 2702 3.119424 CCGACAAAGAGAACTACTCCCTC 60.119 52.174 0.00 0.00 45.96 4.30
2454 2703 3.119424 CGACAAAGAGAACTACTCCCTCC 60.119 52.174 0.00 0.00 45.96 4.30
2455 2704 2.826725 ACAAAGAGAACTACTCCCTCCG 59.173 50.000 0.00 0.00 45.96 4.63
2456 2705 2.826725 CAAAGAGAACTACTCCCTCCGT 59.173 50.000 0.00 0.00 45.96 4.69
2457 2706 2.903375 AGAGAACTACTCCCTCCGTT 57.097 50.000 0.00 0.00 45.96 4.44
2458 2707 2.725637 AGAGAACTACTCCCTCCGTTC 58.274 52.381 0.00 0.00 45.96 3.95
2459 2708 1.750206 GAGAACTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 39.53 3.62
2460 2709 1.358445 AGAACTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 37.15 3.36
2461 2710 2.579860 AGAACTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 37.15 2.94
2462 2711 3.011032 AGAACTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 37.15 2.69
2463 2712 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2464 2713 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2465 2714 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2466 2715 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2467 2716 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2468 2717 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2469 2718 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2470 2719 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2471 2720 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2472 2721 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2473 2722 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2474 2723 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2475 2724 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2476 2725 8.182227 CCTCCGTTCCTAAATATTTGTCTTTTC 58.818 37.037 11.05 0.00 0.00 2.29
2477 2726 8.857694 TCCGTTCCTAAATATTTGTCTTTTCT 57.142 30.769 11.05 0.00 0.00 2.52
2478 2727 9.947433 TCCGTTCCTAAATATTTGTCTTTTCTA 57.053 29.630 11.05 0.00 0.00 2.10
2505 2754 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
2506 2755 8.308931 AGATTTTAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
2507 2756 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
2508 2757 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2509 2758 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2510 2759 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2511 2760 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2512 2761 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2513 2762 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2514 2763 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2515 2764 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2516 2765 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2517 2766 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2518 2767 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2519 2768 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2520 2769 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2521 2770 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2522 2771 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2523 2772 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2524 2773 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2525 2774 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
2526 2775 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
2527 2776 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
2528 2777 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
2529 2778 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
2530 2779 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
2531 2780 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
2559 2808 9.678941 AATATGTCTATATACATTCGTATGCGG 57.321 33.333 8.84 0.00 40.52 5.69
2560 2809 6.505044 TGTCTATATACATTCGTATGCGGT 57.495 37.500 2.62 0.00 38.79 5.68
2561 2810 7.614124 TGTCTATATACATTCGTATGCGGTA 57.386 36.000 2.62 0.00 38.79 4.02
2562 2811 8.042944 TGTCTATATACATTCGTATGCGGTAA 57.957 34.615 2.62 0.00 38.79 2.85
2563 2812 8.680001 TGTCTATATACATTCGTATGCGGTAAT 58.320 33.333 2.62 0.00 38.79 1.89
2564 2813 9.167239 GTCTATATACATTCGTATGCGGTAATC 57.833 37.037 2.62 0.00 38.79 1.75
2565 2814 8.347771 TCTATATACATTCGTATGCGGTAATCC 58.652 37.037 2.62 0.00 38.79 3.01
2566 2815 3.462483 ACATTCGTATGCGGTAATCCA 57.538 42.857 2.62 0.00 38.89 3.41
2567 2816 4.002906 ACATTCGTATGCGGTAATCCAT 57.997 40.909 2.62 0.00 38.89 3.41
2568 2817 4.385825 ACATTCGTATGCGGTAATCCATT 58.614 39.130 2.62 0.00 38.89 3.16
2569 2818 4.819630 ACATTCGTATGCGGTAATCCATTT 59.180 37.500 2.62 0.00 38.89 2.32
2570 2819 4.804608 TTCGTATGCGGTAATCCATTTG 57.195 40.909 2.62 0.00 38.89 2.32
2571 2820 4.061357 TCGTATGCGGTAATCCATTTGA 57.939 40.909 2.62 0.00 38.89 2.69
2572 2821 4.443621 TCGTATGCGGTAATCCATTTGAA 58.556 39.130 2.62 0.00 38.89 2.69
2573 2822 4.509970 TCGTATGCGGTAATCCATTTGAAG 59.490 41.667 2.62 0.00 38.89 3.02
2574 2823 4.509970 CGTATGCGGTAATCCATTTGAAGA 59.490 41.667 0.00 0.00 0.00 2.87
2575 2824 4.900635 ATGCGGTAATCCATTTGAAGAC 57.099 40.909 0.00 0.00 0.00 3.01
2576 2825 3.680490 TGCGGTAATCCATTTGAAGACA 58.320 40.909 0.00 0.00 0.00 3.41
2577 2826 4.075682 TGCGGTAATCCATTTGAAGACAA 58.924 39.130 0.00 0.00 0.00 3.18
2594 2843 8.263940 TGAAGACAAATATTTAGAAACGGAGG 57.736 34.615 0.00 0.00 0.00 4.30
2595 2844 8.098286 TGAAGACAAATATTTAGAAACGGAGGA 58.902 33.333 0.00 0.00 0.00 3.71
2596 2845 8.857694 AAGACAAATATTTAGAAACGGAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
2597 2846 8.494016 AGACAAATATTTAGAAACGGAGGAAG 57.506 34.615 0.00 0.00 0.00 3.46
2598 2847 8.101419 AGACAAATATTTAGAAACGGAGGAAGT 58.899 33.333 0.00 0.00 0.00 3.01
2599 2848 9.374838 GACAAATATTTAGAAACGGAGGAAGTA 57.625 33.333 0.00 0.00 0.00 2.24
2611 2860 3.633986 CGGAGGAAGTAATACCCTAACGT 59.366 47.826 0.00 0.00 0.00 3.99
2627 2876 7.850193 ACCCTAACGTAACTTGGTTATATTGA 58.150 34.615 0.00 0.00 30.49 2.57
3048 4329 3.627747 GCTTCTCCCCTGTAGAACCTCTA 60.628 52.174 0.00 0.00 0.00 2.43
3256 5373 8.449397 CCTTACGGATGATACACTACACTATAC 58.551 40.741 0.00 0.00 0.00 1.47
3527 5647 8.334734 AGATTCTCCCCCAATTCATGATATTAG 58.665 37.037 0.00 0.00 0.00 1.73
3529 5649 7.646654 TCTCCCCCAATTCATGATATTAGAA 57.353 36.000 0.00 0.00 0.00 2.10
3624 5906 0.250295 CCTTGAAGGTCCGAACAGCA 60.250 55.000 2.25 0.00 0.00 4.41
3642 5924 0.749091 CATGCGGGGAAATGAGCTCA 60.749 55.000 20.79 20.79 0.00 4.26
3694 5976 2.291365 CAGCCATTCGGACAATGATCA 58.709 47.619 0.00 0.00 0.00 2.92
3819 6101 1.457303 GCTGTTACTGCGACACTTCTG 59.543 52.381 0.00 0.00 0.00 3.02
3957 6239 4.458989 AGCAGATAAAGACGCAAATTTCCA 59.541 37.500 0.00 0.00 0.00 3.53
4204 6503 5.274881 CATCAATGCTAAGCGGAATCTAC 57.725 43.478 0.00 0.00 0.00 2.59
4321 6620 3.571401 CAGTCTTTCCAACAGAAATGCCT 59.429 43.478 0.00 0.00 43.50 4.75
4386 6685 9.106070 AGAACGTCTTACATTTAAAAACAGAGT 57.894 29.630 0.00 0.00 0.00 3.24
4476 6775 8.896744 TGAGATTGAAAATCATGATTCCACTAC 58.103 33.333 20.95 11.59 0.00 2.73
4647 6952 0.535102 GATTATGACAGGTGGGCCCG 60.535 60.000 19.37 4.81 38.74 6.13
4739 7047 1.203287 GCAATCTGGTCCCTGCTTTTC 59.797 52.381 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 139 3.252458 GTGACATGTAAAGGAAGCCGTTT 59.748 43.478 0.00 0.00 35.01 3.60
142 144 4.219033 CGTTTGTGACATGTAAAGGAAGC 58.781 43.478 0.00 0.00 0.00 3.86
183 185 4.119442 AGAGTATCGCCGTTGTTGTATT 57.881 40.909 0.00 0.00 42.67 1.89
184 186 3.795623 AGAGTATCGCCGTTGTTGTAT 57.204 42.857 0.00 0.00 42.67 2.29
197 199 2.537401 ACGCGCCAAAAGTAGAGTATC 58.463 47.619 5.73 0.00 0.00 2.24
314 319 3.792124 GCAACTTGCCATCGCCTTATTAC 60.792 47.826 1.95 0.00 37.42 1.89
359 370 3.988976 TTGGACTTGAGGAGAATGAGG 57.011 47.619 0.00 0.00 0.00 3.86
372 383 8.325046 AGTTTATCTATCTGCTCTTTTGGACTT 58.675 33.333 0.00 0.00 0.00 3.01
411 425 2.223572 CGATCGACACATCACTCATGGA 60.224 50.000 10.26 0.00 36.72 3.41
448 462 1.204146 ATGGCCACTCATTCCGTACT 58.796 50.000 8.16 0.00 0.00 2.73
539 553 0.751643 AGCTTGGGCGTGTTTGTTCT 60.752 50.000 0.00 0.00 44.37 3.01
560 574 2.108168 TGGTGTAGACAGGTATGCCTC 58.892 52.381 0.00 0.00 44.97 4.70
566 580 1.330234 TGCGTTGGTGTAGACAGGTA 58.670 50.000 0.00 0.00 0.00 3.08
596 610 1.323534 GTTGGATAAGTGCGCGTGTAG 59.676 52.381 8.43 0.00 0.00 2.74
630 669 1.590932 ATGGCAGCAAGATCGTCATC 58.409 50.000 0.00 0.00 0.00 2.92
665 704 0.040781 TCGGTTGCGTTTTTAGCTGC 60.041 50.000 0.00 0.00 35.28 5.25
694 737 4.164796 TGGTCAGTGATATGAGGAAATGCT 59.835 41.667 0.00 0.00 0.00 3.79
695 738 4.454678 TGGTCAGTGATATGAGGAAATGC 58.545 43.478 0.00 0.00 0.00 3.56
727 770 1.599047 CTCTGGTCCATCGGTTGCT 59.401 57.895 0.00 0.00 0.00 3.91
764 822 0.937699 TGCTTGGTTTCGTCTCGTCG 60.938 55.000 0.00 0.00 0.00 5.12
860 922 1.372623 GGGTCGATCGGTATTCGGC 60.373 63.158 16.41 0.00 40.35 5.54
889 962 1.880340 CGATGCGACAGAGAAGGCC 60.880 63.158 0.00 0.00 0.00 5.19
890 963 2.520904 GCGATGCGACAGAGAAGGC 61.521 63.158 0.00 0.00 0.00 4.35
893 966 2.193447 GTATTGCGATGCGACAGAGAA 58.807 47.619 0.00 0.00 0.00 2.87
895 968 0.500178 CGTATTGCGATGCGACAGAG 59.500 55.000 18.52 0.00 42.96 3.35
896 969 0.099791 TCGTATTGCGATGCGACAGA 59.900 50.000 21.44 1.38 43.81 3.41
897 970 2.577225 TCGTATTGCGATGCGACAG 58.423 52.632 21.44 0.00 43.81 3.51
1000 1076 0.179045 GTGTGTGAGTGAGTTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
1064 1143 2.309613 TGGCAGAATGATAATGGTGGC 58.690 47.619 0.00 0.00 39.69 5.01
1073 1152 2.242965 TCAACCTCCATGGCAGAATGAT 59.757 45.455 6.96 0.00 37.57 2.45
1206 1285 2.900273 GCGACCCAGCACCATAGA 59.100 61.111 0.00 0.00 37.05 1.98
1332 1411 3.121030 CCCTTGAAGAGCGGCGTG 61.121 66.667 9.37 0.00 0.00 5.34
1341 1420 1.377333 GACCCCGAAGCCCTTGAAG 60.377 63.158 0.00 0.00 0.00 3.02
1389 1468 0.179145 CGGTGTACTCCATGACGACC 60.179 60.000 14.09 0.00 0.00 4.79
1421 1500 7.915293 AAACATCCACGACTAAATCAATGTA 57.085 32.000 0.00 0.00 0.00 2.29
1423 1502 6.033831 GCAAAACATCCACGACTAAATCAATG 59.966 38.462 0.00 0.00 0.00 2.82
1424 1503 6.092748 GCAAAACATCCACGACTAAATCAAT 58.907 36.000 0.00 0.00 0.00 2.57
1425 1504 5.457140 GCAAAACATCCACGACTAAATCAA 58.543 37.500 0.00 0.00 0.00 2.57
1427 1506 4.088648 CGCAAAACATCCACGACTAAATC 58.911 43.478 0.00 0.00 0.00 2.17
1429 1508 2.224549 CCGCAAAACATCCACGACTAAA 59.775 45.455 0.00 0.00 0.00 1.85
1431 1510 1.434555 CCGCAAAACATCCACGACTA 58.565 50.000 0.00 0.00 0.00 2.59
1433 1512 1.442017 GCCGCAAAACATCCACGAC 60.442 57.895 0.00 0.00 0.00 4.34
1435 1514 1.072116 CATGCCGCAAAACATCCACG 61.072 55.000 0.00 0.00 0.00 4.94
1437 1516 0.678395 AACATGCCGCAAAACATCCA 59.322 45.000 0.00 0.00 0.00 3.41
1442 1521 0.597118 TCAGCAACATGCCGCAAAAC 60.597 50.000 9.39 0.00 46.52 2.43
1444 1523 1.007502 GTCAGCAACATGCCGCAAA 60.008 52.632 9.39 0.00 46.52 3.68
1447 1526 2.387445 TACGTCAGCAACATGCCGC 61.387 57.895 0.00 0.00 46.52 6.53
1449 1528 1.289109 ACGTACGTCAGCAACATGCC 61.289 55.000 16.72 0.00 46.52 4.40
1453 1649 1.227002 TGCACGTACGTCAGCAACA 60.227 52.632 25.55 12.22 33.48 3.33
1456 1652 2.728015 CGTGCACGTACGTCAGCA 60.728 61.111 30.50 24.41 39.13 4.41
1457 1653 4.117372 GCGTGCACGTACGTCAGC 62.117 66.667 36.80 20.16 45.36 4.26
1472 1668 4.980903 GCGTGCCACCTGTTTGCG 62.981 66.667 0.00 0.00 0.00 4.85
1475 1671 1.893808 CTCAGCGTGCCACCTGTTT 60.894 57.895 11.44 0.00 0.00 2.83
1639 1835 9.206870 CAACATGCATAAAAATAAGTTGGAACT 57.793 29.630 0.00 0.00 42.04 3.01
1640 1836 7.956943 GCAACATGCATAAAAATAAGTTGGAAC 59.043 33.333 18.35 4.47 44.26 3.62
1641 1837 8.027440 GCAACATGCATAAAAATAAGTTGGAA 57.973 30.769 18.35 0.00 44.26 3.53
1642 1838 7.593875 GCAACATGCATAAAAATAAGTTGGA 57.406 32.000 18.35 0.00 44.26 3.53
1686 1889 9.976511 GTATACTAGTAGTTGGAACATGCATAA 57.023 33.333 8.40 0.00 39.30 1.90
1687 1890 9.363401 AGTATACTAGTAGTTGGAACATGCATA 57.637 33.333 8.40 0.00 39.30 3.14
1730 1933 2.671896 TTAGGGACGGAGGGAGTATC 57.328 55.000 0.00 0.00 0.00 2.24
1731 1934 3.632420 ATTTAGGGACGGAGGGAGTAT 57.368 47.619 0.00 0.00 0.00 2.12
1732 1935 3.464833 AGTATTTAGGGACGGAGGGAGTA 59.535 47.826 0.00 0.00 0.00 2.59
1733 1936 2.246849 AGTATTTAGGGACGGAGGGAGT 59.753 50.000 0.00 0.00 0.00 3.85
1736 1939 2.770232 ACAAGTATTTAGGGACGGAGGG 59.230 50.000 0.00 0.00 0.00 4.30
1738 1941 5.340439 AAGACAAGTATTTAGGGACGGAG 57.660 43.478 0.00 0.00 0.00 4.63
1741 1944 6.979238 CCTAGAAAGACAAGTATTTAGGGACG 59.021 42.308 0.00 0.00 0.00 4.79
1742 1945 6.762187 GCCTAGAAAGACAAGTATTTAGGGAC 59.238 42.308 9.79 0.00 0.00 4.46
1743 1946 6.442564 TGCCTAGAAAGACAAGTATTTAGGGA 59.557 38.462 9.79 5.62 0.00 4.20
1744 1947 6.650120 TGCCTAGAAAGACAAGTATTTAGGG 58.350 40.000 9.79 6.40 0.00 3.53
1745 1948 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1747 1950 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1749 1952 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
1750 1953 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
1751 1954 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
1752 1955 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
1753 1956 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
1754 1957 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
1755 1958 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
1756 1959 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1757 1960 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1758 1961 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1759 1962 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1760 1963 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1761 1964 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1762 1965 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1763 1966 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1764 1967 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1765 1968 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1766 1969 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1767 1970 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1768 1971 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1769 1972 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1770 1973 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
1771 1974 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
1772 1975 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
1773 1976 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
1774 1977 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
1775 1978 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
1776 1979 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1777 1980 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1778 1981 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
1779 1982 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1780 1983 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1781 1984 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1782 1985 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1783 1986 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
1784 1987 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
1785 1988 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
1786 1989 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
1787 1990 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
1788 1991 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
1789 1992 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
1830 2033 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
1831 2034 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
1833 2036 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
1834 2037 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
1835 2038 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
1836 2039 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
1837 2040 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
1838 2041 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
1839 2042 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
1840 2043 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
1841 2044 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
1842 2045 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
1843 2046 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
1844 2047 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
1845 2048 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
1846 2049 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
1847 2050 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
1848 2051 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
1849 2052 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
1850 2053 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
1851 2054 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
1852 2055 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
1853 2056 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1854 2057 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1856 2059 9.959721 TCTAAATACTTGTCTTTCTAGGCATTT 57.040 29.630 0.00 0.00 35.56 2.32
1857 2060 9.959721 TTCTAAATACTTGTCTTTCTAGGCATT 57.040 29.630 0.00 0.00 35.56 3.56
1858 2061 9.959721 TTTCTAAATACTTGTCTTTCTAGGCAT 57.040 29.630 0.00 0.00 35.56 4.40
1859 2062 9.216117 GTTTCTAAATACTTGTCTTTCTAGGCA 57.784 33.333 0.00 0.00 33.22 4.75
1860 2063 8.381387 CGTTTCTAAATACTTGTCTTTCTAGGC 58.619 37.037 0.00 0.00 0.00 3.93
1861 2064 8.870879 CCGTTTCTAAATACTTGTCTTTCTAGG 58.129 37.037 0.00 0.00 0.00 3.02
1862 2065 9.635520 TCCGTTTCTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
1863 2066 9.635520 CTCCGTTTCTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
1864 2067 7.603024 CCTCCGTTTCTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
1865 2068 7.148457 CCCTCCGTTTCTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
1866 2069 6.653740 CCCTCCGTTTCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
1867 2070 6.013984 TCCCTCCGTTTCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
1868 2071 5.482878 TCCCTCCGTTTCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
1869 2072 5.727434 TCCCTCCGTTTCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
1870 2073 5.247792 ACTCCCTCCGTTTCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
1871 2074 5.731591 ACTCCCTCCGTTTCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
1872 2075 6.894103 TCTACTCCCTCCGTTTCTAAATACTT 59.106 38.462 0.00 0.00 0.00 2.24
1873 2076 6.430007 TCTACTCCCTCCGTTTCTAAATACT 58.570 40.000 0.00 0.00 0.00 2.12
1874 2077 6.705863 TCTACTCCCTCCGTTTCTAAATAC 57.294 41.667 0.00 0.00 0.00 1.89
1875 2078 7.909485 ATTCTACTCCCTCCGTTTCTAAATA 57.091 36.000 0.00 0.00 0.00 1.40
1876 2079 6.809976 ATTCTACTCCCTCCGTTTCTAAAT 57.190 37.500 0.00 0.00 0.00 1.40
1877 2080 6.616237 AATTCTACTCCCTCCGTTTCTAAA 57.384 37.500 0.00 0.00 0.00 1.85
1878 2081 7.909485 ATAATTCTACTCCCTCCGTTTCTAA 57.091 36.000 0.00 0.00 0.00 2.10
1879 2082 7.909485 AATAATTCTACTCCCTCCGTTTCTA 57.091 36.000 0.00 0.00 0.00 2.10
1880 2083 6.809976 AATAATTCTACTCCCTCCGTTTCT 57.190 37.500 0.00 0.00 0.00 2.52
1881 2084 7.678927 GCAAAATAATTCTACTCCCTCCGTTTC 60.679 40.741 0.00 0.00 0.00 2.78
1882 2085 6.095021 GCAAAATAATTCTACTCCCTCCGTTT 59.905 38.462 0.00 0.00 0.00 3.60
1883 2086 5.589050 GCAAAATAATTCTACTCCCTCCGTT 59.411 40.000 0.00 0.00 0.00 4.44
1884 2087 5.104485 AGCAAAATAATTCTACTCCCTCCGT 60.104 40.000 0.00 0.00 0.00 4.69
1885 2088 5.237344 CAGCAAAATAATTCTACTCCCTCCG 59.763 44.000 0.00 0.00 0.00 4.63
1886 2089 5.009110 GCAGCAAAATAATTCTACTCCCTCC 59.991 44.000 0.00 0.00 0.00 4.30
1887 2090 5.009110 GGCAGCAAAATAATTCTACTCCCTC 59.991 44.000 0.00 0.00 0.00 4.30
1888 2091 4.889995 GGCAGCAAAATAATTCTACTCCCT 59.110 41.667 0.00 0.00 0.00 4.20
1889 2092 4.644685 TGGCAGCAAAATAATTCTACTCCC 59.355 41.667 0.00 0.00 0.00 4.30
1890 2093 5.835113 TGGCAGCAAAATAATTCTACTCC 57.165 39.130 0.00 0.00 0.00 3.85
1891 2094 5.689068 GCATGGCAGCAAAATAATTCTACTC 59.311 40.000 0.00 0.00 0.00 2.59
1892 2095 5.127519 TGCATGGCAGCAAAATAATTCTACT 59.872 36.000 8.79 0.00 42.46 2.57
1893 2096 5.350633 TGCATGGCAGCAAAATAATTCTAC 58.649 37.500 8.79 0.00 42.46 2.59
1908 2111 4.287580 GCTTTTGCATGCATGGCA 57.712 50.000 27.34 21.38 46.58 4.92
1944 2147 8.100164 TCCACCTTTTCAAAACAATCTCTTTTT 58.900 29.630 0.00 0.00 0.00 1.94
1946 2149 7.181569 TCCACCTTTTCAAAACAATCTCTTT 57.818 32.000 0.00 0.00 0.00 2.52
1947 2150 6.790232 TCCACCTTTTCAAAACAATCTCTT 57.210 33.333 0.00 0.00 0.00 2.85
1948 2151 6.983906 ATCCACCTTTTCAAAACAATCTCT 57.016 33.333 0.00 0.00 0.00 3.10
1949 2152 7.598869 GGTTATCCACCTTTTCAAAACAATCTC 59.401 37.037 0.00 0.00 43.29 2.75
1950 2153 7.441836 GGTTATCCACCTTTTCAAAACAATCT 58.558 34.615 0.00 0.00 43.29 2.40
1951 2154 6.649141 GGGTTATCCACCTTTTCAAAACAATC 59.351 38.462 0.00 0.00 46.38 2.67
1952 2155 6.530120 GGGTTATCCACCTTTTCAAAACAAT 58.470 36.000 0.00 0.00 46.38 2.71
1953 2156 5.452077 CGGGTTATCCACCTTTTCAAAACAA 60.452 40.000 0.00 0.00 46.38 2.83
1954 2157 4.038162 CGGGTTATCCACCTTTTCAAAACA 59.962 41.667 0.00 0.00 46.38 2.83
1955 2158 4.552355 CGGGTTATCCACCTTTTCAAAAC 58.448 43.478 0.00 0.00 46.38 2.43
1956 2159 3.574826 CCGGGTTATCCACCTTTTCAAAA 59.425 43.478 0.00 0.00 46.38 2.44
1957 2160 3.158676 CCGGGTTATCCACCTTTTCAAA 58.841 45.455 0.00 0.00 46.38 2.69
1958 2161 2.797786 CCGGGTTATCCACCTTTTCAA 58.202 47.619 0.00 0.00 46.38 2.69
1959 2162 1.614850 GCCGGGTTATCCACCTTTTCA 60.615 52.381 2.18 0.00 46.38 2.69
1960 2163 1.100510 GCCGGGTTATCCACCTTTTC 58.899 55.000 2.18 0.00 46.38 2.29
1961 2164 0.323999 GGCCGGGTTATCCACCTTTT 60.324 55.000 2.18 0.00 46.38 2.27
1962 2165 1.212250 AGGCCGGGTTATCCACCTTT 61.212 55.000 2.18 0.00 46.38 3.11
1963 2166 1.618447 AGGCCGGGTTATCCACCTT 60.618 57.895 2.18 0.00 46.38 3.50
1964 2167 2.042261 AGGCCGGGTTATCCACCT 59.958 61.111 2.18 0.00 46.38 4.00
1965 2168 2.192175 CAGGCCGGGTTATCCACC 59.808 66.667 2.18 0.00 46.46 4.61
1966 2169 1.451387 CACAGGCCGGGTTATCCAC 60.451 63.158 8.08 0.00 34.36 4.02
1967 2170 2.994699 CACAGGCCGGGTTATCCA 59.005 61.111 8.08 0.00 34.36 3.41
1968 2171 2.516225 GCACAGGCCGGGTTATCC 60.516 66.667 8.08 0.00 0.00 2.59
1969 2172 2.112815 GTGCACAGGCCGGGTTATC 61.113 63.158 13.17 0.00 40.13 1.75
1970 2173 2.045340 GTGCACAGGCCGGGTTAT 60.045 61.111 13.17 0.00 40.13 1.89
1971 2174 4.690719 CGTGCACAGGCCGGGTTA 62.691 66.667 18.64 0.00 40.13 2.85
1974 2177 3.673956 TATTCGTGCACAGGCCGGG 62.674 63.158 18.64 1.20 40.13 5.73
1975 2178 1.095228 ATTATTCGTGCACAGGCCGG 61.095 55.000 18.64 0.00 40.13 6.13
1976 2179 0.027979 CATTATTCGTGCACAGGCCG 59.972 55.000 18.64 1.94 40.13 6.13
1977 2180 0.248621 GCATTATTCGTGCACAGGCC 60.249 55.000 18.64 0.00 42.08 5.19
1978 2181 0.451383 TGCATTATTCGTGCACAGGC 59.549 50.000 18.64 10.72 46.76 4.85
1984 2187 2.250188 GGTTGTGTGCATTATTCGTGC 58.750 47.619 0.00 0.00 42.81 5.34
1985 2188 3.550950 TGGTTGTGTGCATTATTCGTG 57.449 42.857 0.00 0.00 0.00 4.35
1986 2189 7.744087 ATATATGGTTGTGTGCATTATTCGT 57.256 32.000 0.00 0.00 0.00 3.85
2013 2216 7.226720 TGTTCAGTTGCTGGTTTTTGTTTTTAA 59.773 29.630 0.00 0.00 31.51 1.52
2014 2217 6.706270 TGTTCAGTTGCTGGTTTTTGTTTTTA 59.294 30.769 0.00 0.00 31.51 1.52
2015 2218 5.529060 TGTTCAGTTGCTGGTTTTTGTTTTT 59.471 32.000 0.00 0.00 31.51 1.94
2016 2219 5.059833 TGTTCAGTTGCTGGTTTTTGTTTT 58.940 33.333 0.00 0.00 31.51 2.43
2017 2220 4.636249 TGTTCAGTTGCTGGTTTTTGTTT 58.364 34.783 0.00 0.00 31.51 2.83
2018 2221 4.264460 TGTTCAGTTGCTGGTTTTTGTT 57.736 36.364 0.00 0.00 31.51 2.83
2019 2222 3.951775 TGTTCAGTTGCTGGTTTTTGT 57.048 38.095 0.00 0.00 31.51 2.83
2020 2223 5.799681 ATTTGTTCAGTTGCTGGTTTTTG 57.200 34.783 0.00 0.00 31.51 2.44
2021 2224 6.429385 TCAAATTTGTTCAGTTGCTGGTTTTT 59.571 30.769 17.47 0.00 31.51 1.94
2022 2225 5.936956 TCAAATTTGTTCAGTTGCTGGTTTT 59.063 32.000 17.47 0.00 31.51 2.43
2025 2228 4.432712 GTCAAATTTGTTCAGTTGCTGGT 58.567 39.130 17.47 0.00 31.51 4.00
2032 2235 4.993029 TTTCGGGTCAAATTTGTTCAGT 57.007 36.364 17.47 0.00 0.00 3.41
2066 2269 3.604494 TACTGTCGCGAGGCACACG 62.604 63.158 10.24 1.46 43.37 4.49
2068 2271 1.080772 CTTACTGTCGCGAGGCACA 60.081 57.895 10.24 3.03 43.37 4.57
2080 2283 2.104111 TGGTTGTCTGGTGGACTTACTG 59.896 50.000 0.00 0.00 44.74 2.74
2086 2289 2.490991 GTTAGTGGTTGTCTGGTGGAC 58.509 52.381 0.00 0.00 44.70 4.02
2089 2292 1.420138 AGGGTTAGTGGTTGTCTGGTG 59.580 52.381 0.00 0.00 0.00 4.17
2091 2294 3.517901 TCATAGGGTTAGTGGTTGTCTGG 59.482 47.826 0.00 0.00 0.00 3.86
2116 2319 6.671614 TGTGTATCGTTTGTTTCTGTCTTT 57.328 33.333 0.00 0.00 0.00 2.52
2119 2322 6.044512 AGTTGTGTATCGTTTGTTTCTGTC 57.955 37.500 0.00 0.00 0.00 3.51
2120 2323 5.007332 GGAGTTGTGTATCGTTTGTTTCTGT 59.993 40.000 0.00 0.00 0.00 3.41
2121 2324 5.236478 AGGAGTTGTGTATCGTTTGTTTCTG 59.764 40.000 0.00 0.00 0.00 3.02
2122 2325 5.365619 AGGAGTTGTGTATCGTTTGTTTCT 58.634 37.500 0.00 0.00 0.00 2.52
2123 2326 5.668558 AGGAGTTGTGTATCGTTTGTTTC 57.331 39.130 0.00 0.00 0.00 2.78
2131 2334 5.505985 GGCTTAGTCTAGGAGTTGTGTATCG 60.506 48.000 0.00 0.00 0.00 2.92
2132 2335 5.595133 AGGCTTAGTCTAGGAGTTGTGTATC 59.405 44.000 0.00 0.00 0.00 2.24
2133 2336 5.520751 AGGCTTAGTCTAGGAGTTGTGTAT 58.479 41.667 0.00 0.00 0.00 2.29
2153 2356 4.566759 GTGTGGAGTTTTCTTTTTGAAGGC 59.433 41.667 0.00 0.00 35.89 4.35
2161 2364 3.757745 CACACGTGTGGAGTTTTCTTT 57.242 42.857 35.65 0.33 42.10 2.52
2194 2397 0.963962 GACCGACCTGTGGTTAGACA 59.036 55.000 0.00 0.00 40.63 3.41
2222 2425 6.894339 AAACCGAGATCAACCTATGTTTTT 57.106 33.333 0.00 0.00 30.42 1.94
2223 2426 6.894339 AAAACCGAGATCAACCTATGTTTT 57.106 33.333 0.00 0.00 30.42 2.43
2224 2427 6.894339 AAAAACCGAGATCAACCTATGTTT 57.106 33.333 0.00 0.00 30.42 2.83
2255 2458 3.938963 GTGATGGATTGAAACTCGGCTTA 59.061 43.478 0.00 0.00 0.00 3.09
2264 2467 6.542821 ACTTACTGAAGGTGATGGATTGAAA 58.457 36.000 0.00 0.00 36.95 2.69
2268 2471 6.620877 TGTACTTACTGAAGGTGATGGATT 57.379 37.500 0.00 0.00 36.95 3.01
2274 2477 5.011635 TGCTTCATGTACTTACTGAAGGTGA 59.988 40.000 19.82 0.00 43.82 4.02
2277 2480 4.872691 CCTGCTTCATGTACTTACTGAAGG 59.127 45.833 19.82 8.40 43.82 3.46
2280 2483 3.260632 TGCCTGCTTCATGTACTTACTGA 59.739 43.478 0.00 0.00 0.00 3.41
2284 2487 2.028476 ACGTGCCTGCTTCATGTACTTA 60.028 45.455 0.00 0.00 32.40 2.24
2288 2491 1.734377 CGTACGTGCCTGCTTCATGTA 60.734 52.381 7.22 0.00 35.51 2.29
2290 2493 1.014044 ACGTACGTGCCTGCTTCATG 61.014 55.000 22.14 0.00 0.00 3.07
2292 2495 1.663388 CACGTACGTGCCTGCTTCA 60.663 57.895 32.93 0.00 39.39 3.02
2305 2508 9.264719 TCTCTTATTAGATTATGTCGACACGTA 57.735 33.333 22.71 7.68 0.00 3.57
2326 2529 8.446273 CACGTCAATGAAAACATAAGATCTCTT 58.554 33.333 0.00 0.00 39.85 2.85
2336 2539 3.706802 TGTGCACGTCAATGAAAACAT 57.293 38.095 13.13 0.00 0.00 2.71
2346 2549 4.114794 CAGAGATGAATATGTGCACGTCA 58.885 43.478 16.44 14.19 0.00 4.35
2347 2550 4.363138 TCAGAGATGAATATGTGCACGTC 58.637 43.478 16.44 8.68 0.00 4.34
2350 2553 4.815308 AGCTTCAGAGATGAATATGTGCAC 59.185 41.667 10.75 10.75 0.00 4.57
2353 2556 6.282167 AGACAGCTTCAGAGATGAATATGTG 58.718 40.000 10.93 2.20 41.81 3.21
2355 2558 6.751157 AGAGACAGCTTCAGAGATGAATATG 58.249 40.000 0.00 0.00 41.81 1.78
2356 2559 6.982160 AGAGACAGCTTCAGAGATGAATAT 57.018 37.500 0.00 0.00 41.81 1.28
2357 2560 6.264292 GGTAGAGACAGCTTCAGAGATGAATA 59.736 42.308 0.00 0.00 41.81 1.75
2358 2561 5.068987 GGTAGAGACAGCTTCAGAGATGAAT 59.931 44.000 0.00 0.00 41.81 2.57
2360 2563 3.951037 GGTAGAGACAGCTTCAGAGATGA 59.049 47.826 0.00 0.00 41.81 2.92
2361 2564 3.698539 TGGTAGAGACAGCTTCAGAGATG 59.301 47.826 0.00 0.00 44.73 2.90
2364 2567 3.698539 TGATGGTAGAGACAGCTTCAGAG 59.301 47.826 0.00 0.00 0.00 3.35
2366 2569 4.669206 ATGATGGTAGAGACAGCTTCAG 57.331 45.455 0.00 0.00 34.73 3.02
2388 2599 3.071479 GGCATCGGTAGTCAGACAAAAA 58.929 45.455 2.66 0.00 0.00 1.94
2390 2601 1.899814 AGGCATCGGTAGTCAGACAAA 59.100 47.619 2.66 0.00 0.00 2.83
2412 2630 1.202615 GGTTCAAGGTATCCGGCTACC 60.203 57.143 24.23 24.23 41.34 3.18
2413 2631 1.537562 CGGTTCAAGGTATCCGGCTAC 60.538 57.143 6.93 6.93 39.41 3.58
2447 2696 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2448 2697 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2449 2698 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2450 2699 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2451 2700 8.947115 AGAAAAGACAAATATTTAGGAACGGAG 58.053 33.333 0.00 0.00 0.00 4.63
2452 2701 8.857694 AGAAAAGACAAATATTTAGGAACGGA 57.142 30.769 0.00 0.00 0.00 4.69
2479 2728 9.577110 CCGTATGTAGTCACTTGTTAAAATCTA 57.423 33.333 0.00 0.00 0.00 1.98
2480 2729 8.308931 TCCGTATGTAGTCACTTGTTAAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
2481 2730 8.470040 TCCGTATGTAGTCACTTGTTAAAATC 57.530 34.615 0.00 0.00 0.00 2.17
2482 2731 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
2483 2732 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
2484 2733 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
2485 2734 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
2486 2735 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
2487 2736 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2488 2737 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2489 2738 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2490 2739 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2491 2740 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2492 2741 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2493 2742 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2494 2743 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2495 2744 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2496 2745 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2497 2746 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2498 2747 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2499 2748 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2500 2749 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2501 2750 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2502 2751 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2503 2752 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
2504 2753 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
2505 2754 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
2533 2782 9.678941 CCGCATACGAATGTATATAGACATATT 57.321 33.333 13.17 0.00 43.93 1.28
2534 2783 8.847196 ACCGCATACGAATGTATATAGACATAT 58.153 33.333 13.17 5.47 43.93 1.78
2535 2784 8.217131 ACCGCATACGAATGTATATAGACATA 57.783 34.615 13.17 0.00 43.93 2.29
2536 2785 7.096884 ACCGCATACGAATGTATATAGACAT 57.903 36.000 7.18 7.18 43.93 3.06
2537 2786 6.505044 ACCGCATACGAATGTATATAGACA 57.495 37.500 2.07 2.07 43.93 3.41
2538 2787 9.167239 GATTACCGCATACGAATGTATATAGAC 57.833 37.037 0.00 0.00 43.93 2.59
2539 2788 8.347771 GGATTACCGCATACGAATGTATATAGA 58.652 37.037 0.00 0.00 43.93 1.98
2540 2789 8.132995 TGGATTACCGCATACGAATGTATATAG 58.867 37.037 0.00 0.00 43.93 1.31
2541 2790 7.998580 TGGATTACCGCATACGAATGTATATA 58.001 34.615 0.00 0.00 43.93 0.86
2542 2791 6.869695 TGGATTACCGCATACGAATGTATAT 58.130 36.000 0.00 0.00 43.93 0.86
2543 2792 6.270156 TGGATTACCGCATACGAATGTATA 57.730 37.500 0.00 0.00 43.93 1.47
2544 2793 5.142061 TGGATTACCGCATACGAATGTAT 57.858 39.130 0.00 0.00 43.93 2.29
2545 2794 4.587584 TGGATTACCGCATACGAATGTA 57.412 40.909 0.00 0.00 43.93 2.29
2546 2795 3.462483 TGGATTACCGCATACGAATGT 57.538 42.857 0.00 0.00 43.93 2.71
2547 2796 5.049749 TCAAATGGATTACCGCATACGAATG 60.050 40.000 0.00 0.00 43.93 2.67
2548 2797 5.060506 TCAAATGGATTACCGCATACGAAT 58.939 37.500 0.00 0.00 43.93 3.34
2549 2798 4.443621 TCAAATGGATTACCGCATACGAA 58.556 39.130 0.00 0.00 43.93 3.85
2550 2799 4.061357 TCAAATGGATTACCGCATACGA 57.939 40.909 0.00 0.00 43.93 3.43
2551 2800 4.509970 TCTTCAAATGGATTACCGCATACG 59.490 41.667 0.00 0.00 39.42 3.06
2552 2801 5.295787 TGTCTTCAAATGGATTACCGCATAC 59.704 40.000 0.00 0.00 39.42 2.39
2553 2802 5.432645 TGTCTTCAAATGGATTACCGCATA 58.567 37.500 0.00 0.00 39.42 3.14
2554 2803 4.269183 TGTCTTCAAATGGATTACCGCAT 58.731 39.130 0.00 0.00 39.42 4.73
2555 2804 3.680490 TGTCTTCAAATGGATTACCGCA 58.320 40.909 0.00 0.00 39.42 5.69
2556 2805 4.695217 TTGTCTTCAAATGGATTACCGC 57.305 40.909 0.00 0.00 39.42 5.68
2568 2817 8.726988 CCTCCGTTTCTAAATATTTGTCTTCAA 58.273 33.333 11.05 0.00 0.00 2.69
2569 2818 8.098286 TCCTCCGTTTCTAAATATTTGTCTTCA 58.902 33.333 11.05 0.00 0.00 3.02
2570 2819 8.488651 TCCTCCGTTTCTAAATATTTGTCTTC 57.511 34.615 11.05 0.00 0.00 2.87
2571 2820 8.857694 TTCCTCCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
2572 2821 8.101419 ACTTCCTCCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
2573 2822 8.265165 ACTTCCTCCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
2574 2823 9.729281 TTACTTCCTCCGTTTCTAAATATTTGT 57.271 29.630 11.05 0.00 0.00 2.83
2578 2827 9.993454 GGTATTACTTCCTCCGTTTCTAAATAT 57.007 33.333 0.00 0.00 0.00 1.28
2579 2828 8.424133 GGGTATTACTTCCTCCGTTTCTAAATA 58.576 37.037 0.00 0.00 0.00 1.40
2580 2829 7.126879 AGGGTATTACTTCCTCCGTTTCTAAAT 59.873 37.037 0.00 0.00 0.00 1.40
2581 2830 6.441604 AGGGTATTACTTCCTCCGTTTCTAAA 59.558 38.462 0.00 0.00 0.00 1.85
2582 2831 5.960202 AGGGTATTACTTCCTCCGTTTCTAA 59.040 40.000 0.00 0.00 0.00 2.10
2583 2832 5.522641 AGGGTATTACTTCCTCCGTTTCTA 58.477 41.667 0.00 0.00 0.00 2.10
2584 2833 4.359996 AGGGTATTACTTCCTCCGTTTCT 58.640 43.478 0.00 0.00 0.00 2.52
2585 2834 4.750021 AGGGTATTACTTCCTCCGTTTC 57.250 45.455 0.00 0.00 0.00 2.78
2586 2835 5.394553 CGTTAGGGTATTACTTCCTCCGTTT 60.395 44.000 0.00 0.00 32.46 3.60
2587 2836 4.098501 CGTTAGGGTATTACTTCCTCCGTT 59.901 45.833 0.00 0.00 32.46 4.44
2588 2837 3.633986 CGTTAGGGTATTACTTCCTCCGT 59.366 47.826 0.00 0.00 32.46 4.69
2589 2838 3.633986 ACGTTAGGGTATTACTTCCTCCG 59.366 47.826 0.00 0.00 33.90 4.63
2590 2839 6.322456 AGTTACGTTAGGGTATTACTTCCTCC 59.678 42.308 0.00 0.00 32.46 4.30
2591 2840 7.340122 AGTTACGTTAGGGTATTACTTCCTC 57.660 40.000 0.00 0.00 32.46 3.71
2592 2841 7.364144 CCAAGTTACGTTAGGGTATTACTTCCT 60.364 40.741 0.00 0.00 34.85 3.36
2593 2842 6.758416 CCAAGTTACGTTAGGGTATTACTTCC 59.242 42.308 0.00 0.00 26.77 3.46
2594 2843 7.323420 ACCAAGTTACGTTAGGGTATTACTTC 58.677 38.462 0.00 0.00 26.77 3.01
2595 2844 7.244886 ACCAAGTTACGTTAGGGTATTACTT 57.755 36.000 0.00 0.00 28.42 2.24
2596 2845 6.857437 ACCAAGTTACGTTAGGGTATTACT 57.143 37.500 0.00 0.00 0.00 2.24
2611 2860 5.521010 CCGACGCTTCAATATAACCAAGTTA 59.479 40.000 0.00 0.00 32.36 2.24
2915 3164 5.718130 TGATGAGAAAAATTGCAGGGATCTT 59.282 36.000 0.00 0.00 0.00 2.40
2916 3165 5.266788 TGATGAGAAAAATTGCAGGGATCT 58.733 37.500 0.00 0.00 0.00 2.75
2917 3166 5.587388 TGATGAGAAAAATTGCAGGGATC 57.413 39.130 0.00 0.00 0.00 3.36
2956 3241 1.338020 GAGTGACCAAAAAGTGCAGGG 59.662 52.381 0.00 0.00 0.00 4.45
3527 5647 3.034635 TCTTGGCTCCATAGTCTCCTTC 58.965 50.000 0.00 0.00 0.00 3.46
3529 5649 2.856760 TCTTGGCTCCATAGTCTCCT 57.143 50.000 0.00 0.00 0.00 3.69
3621 5903 2.123428 GCTCATTTCCCCGCATGCT 61.123 57.895 17.13 0.00 0.00 3.79
3624 5906 0.749454 GTGAGCTCATTTCCCCGCAT 60.749 55.000 21.47 0.00 0.00 4.73
3642 5924 1.216710 GAGCGCCTTAGCAGAGTGT 59.783 57.895 2.29 0.00 39.83 3.55
3694 5976 2.779430 TGATGTTGGCTGGAGATGGTAT 59.221 45.455 0.00 0.00 0.00 2.73
3819 6101 5.345202 CACTATTGTCGTAACCAAGTCTGAC 59.655 44.000 0.00 0.00 0.00 3.51
4204 6503 9.817365 GTATACACAATATAGTACTGTACACGG 57.183 37.037 19.27 5.82 0.00 4.94
4282 6581 8.139989 GGAAAGACTGCAATGCTTTATTATCAT 58.860 33.333 6.82 0.00 32.45 2.45
4321 6620 5.876357 AGGGAGTATGTAACAGCTTTTTGA 58.124 37.500 0.00 0.00 0.00 2.69
4404 6703 9.838339 GATGATGGAAGATTTAGGAGAAAACTA 57.162 33.333 0.00 0.00 0.00 2.24
4424 6723 5.176223 GCAAACAACACAAAAGAGGATGATG 59.824 40.000 0.00 0.00 0.00 3.07
4428 6727 5.105392 TCAAGCAAACAACACAAAAGAGGAT 60.105 36.000 0.00 0.00 0.00 3.24
4476 6775 6.403333 TGCTATTTACTCTGCAAAAGTACG 57.597 37.500 7.87 0.00 32.12 3.67
4647 6952 5.120208 TCAAACAATTAGAGCTCTTACGCAC 59.880 40.000 23.84 0.00 0.00 5.34
4745 7053 0.748367 GGAGGGACCCGATTGCTTTC 60.748 60.000 4.40 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.