Multiple sequence alignment - TraesCS2D01G295800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G295800 chr2D 100.000 6512 0 0 1 6512 378051929 378058440 0.000000e+00 12026.0
1 TraesCS2D01G295800 chr2D 97.561 164 4 0 2021 2184 344297007 344296844 1.380000e-71 281.0
2 TraesCS2D01G295800 chr2D 99.200 125 1 0 6101 6225 403481438 403481314 6.570000e-55 226.0
3 TraesCS2D01G295800 chr2D 98.400 125 2 0 6101 6225 378059269 378059145 3.060000e-53 220.0
4 TraesCS2D01G295800 chr2A 97.971 3450 58 9 2554 6001 512226231 512229670 0.000000e+00 5973.0
5 TraesCS2D01G295800 chr2A 93.860 1026 50 6 1004 2024 512224864 512225881 0.000000e+00 1533.0
6 TraesCS2D01G295800 chr2A 89.041 292 20 3 2280 2559 674504723 674504432 1.040000e-92 351.0
7 TraesCS2D01G295800 chr2A 88.398 181 16 1 1004 1184 512203585 512203760 5.110000e-51 213.0
8 TraesCS2D01G295800 chr2A 95.000 100 5 0 5987 6086 512230776 512230875 2.430000e-34 158.0
9 TraesCS2D01G295800 chr2A 91.964 112 3 3 2172 2283 512226129 512226234 1.130000e-32 152.0
10 TraesCS2D01G295800 chr2A 84.524 84 11 2 569 651 715377820 715377902 1.500000e-11 82.4
11 TraesCS2D01G295800 chr2B 97.839 3285 66 5 2744 6025 449166134 449169416 0.000000e+00 5668.0
12 TraesCS2D01G295800 chr2B 90.128 2036 131 27 1 2022 449163723 449165702 0.000000e+00 2582.0
13 TraesCS2D01G295800 chr2B 96.429 196 6 1 2554 2749 449165862 449166056 8.150000e-84 322.0
14 TraesCS2D01G295800 chr2B 86.692 263 22 5 2301 2551 606161057 606161318 4.970000e-71 279.0
15 TraesCS2D01G295800 chr2B 84.906 212 18 5 2280 2478 553758581 553758371 1.110000e-47 202.0
16 TraesCS2D01G295800 chr2B 88.636 88 1 1 6013 6100 449169563 449169641 1.490000e-16 99.0
17 TraesCS2D01G295800 chr4D 97.917 288 4 2 6225 6512 274468329 274468614 1.260000e-136 497.0
18 TraesCS2D01G295800 chr4D 99.200 125 1 0 6101 6225 274469652 274469528 6.570000e-55 226.0
19 TraesCS2D01G295800 chr4D 99.200 125 1 0 6101 6225 410297221 410297097 6.570000e-55 226.0
20 TraesCS2D01G295800 chr7D 99.216 255 2 0 6258 6512 440003685 440003939 1.650000e-125 460.0
21 TraesCS2D01G295800 chr7D 96.863 255 8 0 6258 6512 28853100 28853354 1.680000e-115 427.0
22 TraesCS2D01G295800 chr7D 94.595 185 8 1 2020 2204 614813500 614813318 1.070000e-72 285.0
23 TraesCS2D01G295800 chr7D 97.561 164 4 0 2021 2184 184379821 184379984 1.380000e-71 281.0
24 TraesCS2D01G295800 chr7D 86.090 266 22 6 2286 2537 397110626 397110362 8.320000e-69 272.0
25 TraesCS2D01G295800 chr7D 99.200 125 1 0 6101 6225 440003413 440003537 6.570000e-55 226.0
26 TraesCS2D01G295800 chr6D 99.216 255 2 0 6258 6512 15379216 15379470 1.650000e-125 460.0
27 TraesCS2D01G295800 chr6D 99.200 125 1 0 6101 6225 15378951 15379075 6.570000e-55 226.0
28 TraesCS2D01G295800 chr6D 98.425 127 1 1 6099 6225 15380108 15379983 8.500000e-54 222.0
29 TraesCS2D01G295800 chr6D 98.400 125 1 1 6101 6225 461656351 461656228 1.100000e-52 219.0
30 TraesCS2D01G295800 chrUn 98.824 255 2 1 6258 6512 18798696 18798443 2.770000e-123 453.0
31 TraesCS2D01G295800 chrUn 98.400 125 2 0 6101 6225 18798955 18798831 3.060000e-53 220.0
32 TraesCS2D01G295800 chr1D 97.647 255 6 0 6258 6512 481957184 481957438 7.750000e-119 438.0
33 TraesCS2D01G295800 chr1D 97.647 255 6 0 6258 6512 483048348 483048094 7.750000e-119 438.0
34 TraesCS2D01G295800 chr1D 95.480 177 7 1 2021 2196 339368657 339368481 1.380000e-71 281.0
35 TraesCS2D01G295800 chr1D 85.017 287 27 8 2282 2556 476669734 476669452 1.790000e-70 278.0
36 TraesCS2D01G295800 chr5D 97.189 249 7 0 6264 6512 7032946 7032698 7.810000e-114 422.0
37 TraesCS2D01G295800 chr5D 96.450 169 6 0 2018 2186 430963837 430964005 4.970000e-71 279.0
38 TraesCS2D01G295800 chr1B 95.276 254 11 1 6258 6510 449735277 449735530 1.020000e-107 401.0
39 TraesCS2D01G295800 chr1B 85.047 214 18 5 2281 2482 654633734 654633945 8.560000e-49 206.0
40 TraesCS2D01G295800 chr5A 90.000 290 15 5 2281 2558 29067001 29067288 4.800000e-96 363.0
41 TraesCS2D01G295800 chr6A 85.714 287 29 2 2282 2556 144252205 144251919 6.390000e-75 292.0
42 TraesCS2D01G295800 chr7B 86.842 266 22 5 2302 2555 370409574 370409838 1.070000e-72 285.0
43 TraesCS2D01G295800 chr7B 84.400 250 35 4 2305 2551 366461319 366461071 6.520000e-60 243.0
44 TraesCS2D01G295800 chr3A 86.397 272 24 5 2302 2561 566746948 566746678 1.070000e-72 285.0
45 TraesCS2D01G295800 chr3A 85.662 272 26 6 2302 2561 566686505 566686235 2.310000e-69 274.0
46 TraesCS2D01G295800 chr3D 97.576 165 4 0 2020 2184 562563522 562563358 3.840000e-72 283.0
47 TraesCS2D01G295800 chr3D 95.376 173 8 0 2020 2192 613396232 613396404 6.430000e-70 276.0
48 TraesCS2D01G295800 chr3D 94.413 179 7 3 2020 2195 174911326 174911504 8.320000e-69 272.0
49 TraesCS2D01G295800 chr3D 93.855 179 11 0 2014 2192 495237646 495237824 2.990000e-68 270.0
50 TraesCS2D01G295800 chr5B 87.200 250 25 5 2302 2551 667316191 667316433 1.790000e-70 278.0
51 TraesCS2D01G295800 chr5B 83.051 295 35 7 2277 2558 292250719 292251011 3.010000e-63 254.0
52 TraesCS2D01G295800 chr4B 86.364 264 23 4 2283 2534 496828628 496828366 6.430000e-70 276.0
53 TraesCS2D01G295800 chr1A 94.667 75 4 0 2285 2359 270981247 270981173 4.130000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G295800 chr2D 378051929 378058440 6511 False 12026.00 12026 100.00000 1 6512 1 chr2D.!!$F1 6511
1 TraesCS2D01G295800 chr2A 512224864 512230875 6011 False 1954.00 5973 94.69875 1004 6086 4 chr2A.!!$F3 5082
2 TraesCS2D01G295800 chr2B 449163723 449169641 5918 False 2167.75 5668 93.25800 1 6100 4 chr2B.!!$F2 6099
3 TraesCS2D01G295800 chr7D 440003413 440003939 526 False 343.00 460 99.20800 6101 6512 2 chr7D.!!$F3 411
4 TraesCS2D01G295800 chr6D 15378951 15379470 519 False 343.00 460 99.20800 6101 6512 2 chr6D.!!$F1 411
5 TraesCS2D01G295800 chrUn 18798443 18798955 512 True 336.50 453 98.61200 6101 6512 2 chrUn.!!$R1 411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 909 0.108186 ATGGTGTGTGCATCGTCGAT 60.108 50.000 0.75 0.75 0.00 3.59 F
2340 2534 0.178967 TGCCTGCCATCTTTCACCAA 60.179 50.000 0.00 0.00 0.00 3.67 F
2459 2653 0.106894 CCTTATCTCTTCCCCACCGC 59.893 60.000 0.00 0.00 0.00 5.68 F
2528 2722 0.266152 TCCACCCCCAATTTTGGTGT 59.734 50.000 13.82 2.81 46.49 4.16 F
2539 2733 0.453793 TTTTGGTGTTCCGTGCAGTG 59.546 50.000 0.00 0.00 36.30 3.66 F
2540 2734 1.999071 TTTGGTGTTCCGTGCAGTGC 61.999 55.000 8.58 8.58 36.30 4.40 F
4916 5194 2.363683 GCAGGCTGCTAAATGAACTCT 58.636 47.619 31.37 0.00 40.96 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 2634 0.106894 GCGGTGGGGAAGAGATAAGG 59.893 60.000 0.00 0.0 0.00 2.69 R
4313 4591 2.684001 TGAACTTGTCTGTCCAACGT 57.316 45.000 0.00 0.0 0.00 3.99 R
4499 4777 7.046033 GGCACCATTATTAGTTGTACTGTAGT 58.954 38.462 0.00 0.0 0.00 2.73 R
4850 5128 1.876156 GAATCATCGGCATGGTCCTTC 59.124 52.381 0.00 0.0 0.00 3.46 R
5324 5603 5.313712 TGTCTGAGAATTTGGGGAGTAAAC 58.686 41.667 0.00 0.0 0.00 2.01 R
5343 5622 1.216990 GTCCCCCATCCAAGATGTCT 58.783 55.000 4.04 0.0 0.00 3.41 R
6001 6281 1.153429 GGATGTACGGCCAGACCAC 60.153 63.158 2.24 0.0 39.03 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.171103 GGCATTAGTCGGGGCGGT 62.171 66.667 0.00 0.00 0.00 5.68
67 68 1.876497 TTTCTTGGATGCTTGGGCGC 61.876 55.000 0.00 0.00 42.25 6.53
109 110 1.668151 GTGGCGTGAGGTGGTTCTC 60.668 63.158 0.00 0.00 0.00 2.87
110 111 2.047179 GGCGTGAGGTGGTTCTCC 60.047 66.667 0.00 0.00 33.04 3.71
120 121 4.097361 GGTTCTCCGTGCCCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
147 148 4.296912 AGATATGAGGGGCATCATCCTAG 58.703 47.826 7.61 0.00 40.40 3.02
152 153 2.029666 GGCATCATCCTAGCGCGT 59.970 61.111 8.43 0.00 0.00 6.01
185 186 1.005156 GCTGATCCAGATCTCCGGC 60.005 63.158 8.99 0.00 38.60 6.13
202 203 3.052620 GCGTCCGTGCTCAGAGCTA 62.053 63.158 23.15 7.18 42.97 3.32
207 208 1.156645 CCGTGCTCAGAGCTATTGGC 61.157 60.000 23.15 5.92 42.97 4.52
232 233 2.933287 CTGGTGGGTGCTGGGGTA 60.933 66.667 0.00 0.00 0.00 3.69
241 242 2.124529 GCTGGGGTAGGAGCTTGC 60.125 66.667 0.00 0.00 32.12 4.01
246 247 4.176752 GGTAGGAGCTTGCCCGGG 62.177 72.222 19.09 19.09 0.00 5.73
332 333 1.480954 GGTAGCGATGAGGAGGTCAAA 59.519 52.381 0.00 0.00 39.19 2.69
354 355 0.415429 TCCTGCTCCTTTCTCCCTCT 59.585 55.000 0.00 0.00 0.00 3.69
362 363 2.527951 CTTTCTCCCTCTGTGCCCGG 62.528 65.000 0.00 0.00 0.00 5.73
369 370 1.966451 CTCTGTGCCCGGGTGAAAC 60.966 63.158 24.63 15.86 0.00 2.78
429 431 1.077805 TCACCTCCTTGGAGGCGTA 59.922 57.895 29.93 15.95 46.05 4.42
511 513 2.947890 GCGCTGTGGCATCTATCGC 61.948 63.158 0.00 0.00 38.60 4.58
512 514 1.592400 CGCTGTGGCATCTATCGCA 60.592 57.895 0.00 0.00 38.60 5.10
528 530 2.969238 CATGGGCGATGGCGAGTC 60.969 66.667 0.98 0.00 41.24 3.36
551 553 4.135153 CGACCCGGGCAGAGTGAG 62.135 72.222 24.08 0.00 0.00 3.51
561 563 3.386237 AGAGTGAGGCCGCTGTCC 61.386 66.667 8.34 0.00 32.40 4.02
562 564 3.695606 GAGTGAGGCCGCTGTCCA 61.696 66.667 8.34 0.00 32.40 4.02
583 585 0.948623 CTTTGTGGTGGCATCGACGA 60.949 55.000 0.00 0.00 0.00 4.20
584 586 1.225376 TTTGTGGTGGCATCGACGAC 61.225 55.000 0.00 0.00 0.00 4.34
590 592 1.374125 TGGCATCGACGACAGTTGG 60.374 57.895 0.00 0.00 32.56 3.77
614 616 3.021695 CTGACAAGGTCAATGCATGGAT 58.978 45.455 7.14 0.00 42.26 3.41
625 627 5.357878 GTCAATGCATGGATCTCACCTAAAA 59.642 40.000 7.14 0.00 0.00 1.52
633 635 4.290985 TGGATCTCACCTAAAATTGGGACA 59.709 41.667 2.24 0.00 32.43 4.02
656 658 2.292828 AAAGATGGTGGTGGGTTCTG 57.707 50.000 0.00 0.00 0.00 3.02
670 672 1.071299 TTCTGGAGCGTGTGCATGT 59.929 52.632 0.00 0.00 46.23 3.21
712 714 1.760029 TGCTGCGGATATGTTAGACCA 59.240 47.619 0.00 0.00 0.00 4.02
729 731 1.637553 ACCAGTTGATGATCTTGGCCT 59.362 47.619 3.32 0.00 0.00 5.19
733 735 0.332293 TTGATGATCTTGGCCTGCCA 59.668 50.000 6.80 6.80 45.63 4.92
748 750 2.682846 CCATGGGGCAGCTTGGTA 59.317 61.111 2.85 0.00 0.00 3.25
754 756 2.356667 GGCAGCTTGGTAAGGCCT 59.643 61.111 0.00 0.00 41.39 5.19
768 770 3.933861 AAGGCCTCCGAATTAGATGTT 57.066 42.857 5.23 0.00 0.00 2.71
788 790 0.165727 GTGCGTTGATGCGTGATCAA 59.834 50.000 0.00 7.63 46.85 2.57
802 804 4.938080 CGTGATCAAGGTATCAAGCTACT 58.062 43.478 0.00 0.00 37.61 2.57
803 805 4.979197 CGTGATCAAGGTATCAAGCTACTC 59.021 45.833 0.00 0.00 37.61 2.59
804 806 5.293560 GTGATCAAGGTATCAAGCTACTCC 58.706 45.833 0.00 0.00 37.61 3.85
822 825 5.537300 ACTCCATAGCAACATAGATCGTT 57.463 39.130 0.00 0.00 0.00 3.85
823 826 6.650427 ACTCCATAGCAACATAGATCGTTA 57.350 37.500 0.00 0.00 0.00 3.18
833 836 3.641906 ACATAGATCGTTAGGAAGGTGGG 59.358 47.826 0.00 0.00 0.00 4.61
837 840 4.098894 AGATCGTTAGGAAGGTGGGTTTA 58.901 43.478 0.00 0.00 0.00 2.01
841 844 4.533311 TCGTTAGGAAGGTGGGTTTAGATT 59.467 41.667 0.00 0.00 0.00 2.40
843 846 6.047231 CGTTAGGAAGGTGGGTTTAGATTAG 58.953 44.000 0.00 0.00 0.00 1.73
864 867 7.873719 TTAGTCCATGTCTTTTCTTTTGTCA 57.126 32.000 0.00 0.00 0.00 3.58
869 872 5.973565 CCATGTCTTTTCTTTTGTCACACTC 59.026 40.000 0.00 0.00 0.00 3.51
870 873 6.183360 CCATGTCTTTTCTTTTGTCACACTCT 60.183 38.462 0.00 0.00 0.00 3.24
871 874 7.012327 CCATGTCTTTTCTTTTGTCACACTCTA 59.988 37.037 0.00 0.00 0.00 2.43
872 875 7.303634 TGTCTTTTCTTTTGTCACACTCTAC 57.696 36.000 0.00 0.00 0.00 2.59
873 876 6.035650 TGTCTTTTCTTTTGTCACACTCTACG 59.964 38.462 0.00 0.00 0.00 3.51
900 905 7.744087 ATAATAAATATGGTGTGTGCATCGT 57.256 32.000 0.00 0.00 0.00 3.73
901 906 5.673337 ATAAATATGGTGTGTGCATCGTC 57.327 39.130 0.00 0.00 0.00 4.20
902 907 1.570813 ATATGGTGTGTGCATCGTCG 58.429 50.000 0.00 0.00 0.00 5.12
903 908 0.528470 TATGGTGTGTGCATCGTCGA 59.472 50.000 0.00 0.00 0.00 4.20
904 909 0.108186 ATGGTGTGTGCATCGTCGAT 60.108 50.000 0.75 0.75 0.00 3.59
905 910 1.013524 TGGTGTGTGCATCGTCGATG 61.014 55.000 27.22 27.22 42.37 3.84
906 911 1.014044 GGTGTGTGCATCGTCGATGT 61.014 55.000 30.29 0.00 41.60 3.06
907 912 1.624487 GTGTGTGCATCGTCGATGTA 58.376 50.000 30.29 25.60 41.60 2.29
908 913 1.583856 GTGTGTGCATCGTCGATGTAG 59.416 52.381 30.29 11.20 41.60 2.74
909 914 1.470890 TGTGTGCATCGTCGATGTAGA 59.529 47.619 30.29 24.01 41.60 2.59
911 916 2.531912 GTGTGCATCGTCGATGTAGAAG 59.468 50.000 30.29 9.86 41.60 2.85
912 917 2.163613 TGTGCATCGTCGATGTAGAAGT 59.836 45.455 30.29 0.00 41.60 3.01
913 918 2.531912 GTGCATCGTCGATGTAGAAGTG 59.468 50.000 30.29 9.99 41.60 3.16
916 921 1.100510 TCGTCGATGTAGAAGTGGGG 58.899 55.000 4.21 0.00 0.00 4.96
917 922 0.815734 CGTCGATGTAGAAGTGGGGT 59.184 55.000 0.00 0.00 0.00 4.95
920 925 3.488721 CGTCGATGTAGAAGTGGGGTTAG 60.489 52.174 0.00 0.00 0.00 2.34
931 936 4.302559 AGTGGGGTTAGCCTTCTTTTAG 57.697 45.455 0.00 0.00 34.45 1.85
1002 1007 9.690434 TTTTTAAATGTTTCGAAACGGAAAATG 57.310 25.926 30.05 0.00 41.74 2.32
1044 1049 3.047877 GTTGGCAGGACGGAACCG 61.048 66.667 11.83 11.83 46.03 4.44
1045 1050 3.235481 TTGGCAGGACGGAACCGA 61.235 61.111 20.14 0.00 42.83 4.69
1046 1051 2.809307 TTGGCAGGACGGAACCGAA 61.809 57.895 20.14 0.00 42.83 4.30
1047 1052 2.031465 GGCAGGACGGAACCGAAA 59.969 61.111 20.14 0.00 42.83 3.46
1048 1053 1.598685 GGCAGGACGGAACCGAAAA 60.599 57.895 20.14 0.00 42.83 2.29
1081 1089 2.078849 TTCACGAGCTACCACACATG 57.921 50.000 0.00 0.00 0.00 3.21
1132 1141 3.787676 CAATTCGCGCGGCTGACA 61.788 61.111 31.69 6.17 0.00 3.58
1316 1329 0.552615 ACCCAATCCCTAGCCAACCT 60.553 55.000 0.00 0.00 0.00 3.50
1333 1346 2.308690 ACCTAACGCTAGATCCCAGTC 58.691 52.381 0.00 0.00 0.00 3.51
1656 1669 3.733960 TCGACAGTGCTCGACGGG 61.734 66.667 11.96 0.00 37.76 5.28
1914 1930 4.491676 TGGTAAGTTCGACTGTAGCATTC 58.508 43.478 0.00 0.00 0.00 2.67
1942 1958 3.623060 GTGAATGATGACGTGCACCTAAT 59.377 43.478 12.15 0.00 35.99 1.73
1943 1959 4.808895 GTGAATGATGACGTGCACCTAATA 59.191 41.667 12.15 0.00 35.99 0.98
1949 1965 6.578944 TGATGACGTGCACCTAATATACTTT 58.421 36.000 12.15 0.00 0.00 2.66
2024 2040 4.272748 GGGATCCGTAGCAACAAAATACTC 59.727 45.833 5.45 0.00 0.00 2.59
2026 2042 3.602483 TCCGTAGCAACAAAATACTCCC 58.398 45.455 0.00 0.00 0.00 4.30
2027 2043 3.262405 TCCGTAGCAACAAAATACTCCCT 59.738 43.478 0.00 0.00 0.00 4.20
2030 2046 2.711542 AGCAACAAAATACTCCCTCCG 58.288 47.619 0.00 0.00 0.00 4.63
2031 2047 2.039879 AGCAACAAAATACTCCCTCCGT 59.960 45.455 0.00 0.00 0.00 4.69
2033 2049 3.119955 GCAACAAAATACTCCCTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
2034 2050 3.345508 ACAAAATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
2036 2052 4.098894 ACAAAATACTCCCTCCGTTCCTA 58.901 43.478 0.00 0.00 0.00 2.94
2037 2053 4.533311 ACAAAATACTCCCTCCGTTCCTAA 59.467 41.667 0.00 0.00 0.00 2.69
2038 2054 5.013391 ACAAAATACTCCCTCCGTTCCTAAA 59.987 40.000 0.00 0.00 0.00 1.85
2044 2060 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2045 2061 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2046 2062 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2048 2064 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2049 2065 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2051 2067 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2052 2068 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2053 2069 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2054 2070 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2067 2083 9.847224 TTTGTCTTTCTAGAGGTTTCAAATAGT 57.153 29.630 0.00 0.00 0.00 2.12
2068 2084 8.833231 TGTCTTTCTAGAGGTTTCAAATAGTG 57.167 34.615 0.00 0.00 0.00 2.74
2069 2085 8.647796 TGTCTTTCTAGAGGTTTCAAATAGTGA 58.352 33.333 0.00 0.00 0.00 3.41
2070 2086 8.927721 GTCTTTCTAGAGGTTTCAAATAGTGAC 58.072 37.037 0.00 0.00 35.39 3.67
2071 2087 8.871125 TCTTTCTAGAGGTTTCAAATAGTGACT 58.129 33.333 0.00 0.00 35.39 3.41
2073 2089 9.924650 TTTCTAGAGGTTTCAAATAGTGACTAC 57.075 33.333 0.00 0.00 35.39 2.73
2074 2090 8.645814 TCTAGAGGTTTCAAATAGTGACTACA 57.354 34.615 0.00 0.00 35.39 2.74
2075 2091 9.256228 TCTAGAGGTTTCAAATAGTGACTACAT 57.744 33.333 0.00 0.00 35.39 2.29
2078 2094 7.974501 AGAGGTTTCAAATAGTGACTACATACG 59.025 37.037 0.00 0.00 35.39 3.06
2079 2095 7.039882 AGGTTTCAAATAGTGACTACATACGG 58.960 38.462 0.00 0.00 35.39 4.02
2080 2096 7.037438 GGTTTCAAATAGTGACTACATACGGA 58.963 38.462 0.00 0.00 35.39 4.69
2082 2098 8.378421 GTTTCAAATAGTGACTACATACGGAAC 58.622 37.037 0.00 0.00 35.39 3.62
2084 2100 7.604549 TCAAATAGTGACTACATACGGAACAA 58.395 34.615 0.00 0.00 0.00 2.83
2085 2101 8.089597 TCAAATAGTGACTACATACGGAACAAA 58.910 33.333 0.00 0.00 0.00 2.83
2086 2102 8.714179 CAAATAGTGACTACATACGGAACAAAA 58.286 33.333 0.00 0.00 0.00 2.44
2090 2106 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
2091 2107 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
2094 2110 8.836268 ACTACATACGGAACAAAATGAGTAAA 57.164 30.769 0.00 0.00 0.00 2.01
2096 2112 9.916397 CTACATACGGAACAAAATGAGTAAATC 57.084 33.333 0.00 0.00 0.00 2.17
2099 2115 9.916397 CATACGGAACAAAATGAGTAAATCTAC 57.084 33.333 0.00 0.00 0.00 2.59
2101 2117 7.803724 ACGGAACAAAATGAGTAAATCTACAC 58.196 34.615 0.00 0.00 0.00 2.90
2102 2118 7.660208 ACGGAACAAAATGAGTAAATCTACACT 59.340 33.333 0.00 0.00 0.00 3.55
2104 2120 9.220767 GGAACAAAATGAGTAAATCTACACTCT 57.779 33.333 3.65 0.00 41.46 3.24
2132 2148 9.678941 AAATATGTCTATATACATCCGTATGCG 57.321 33.333 7.00 0.00 40.52 4.73
2133 2149 6.694877 ATGTCTATATACATCCGTATGCGT 57.305 37.500 1.69 0.00 38.79 5.24
2134 2150 6.505044 TGTCTATATACATCCGTATGCGTT 57.495 37.500 1.69 0.00 38.79 4.84
2135 2151 6.319399 TGTCTATATACATCCGTATGCGTTG 58.681 40.000 1.69 2.23 38.79 4.10
2138 2154 3.728076 ATACATCCGTATGCGTTGACT 57.272 42.857 1.69 0.00 36.94 3.41
2142 2158 4.439057 ACATCCGTATGCGTTGACTATTT 58.561 39.130 1.69 0.00 36.50 1.40
2145 2161 4.496360 TCCGTATGCGTTGACTATTTGAA 58.504 39.130 1.69 0.00 36.15 2.69
2146 2162 4.930405 TCCGTATGCGTTGACTATTTGAAA 59.070 37.500 1.69 0.00 36.15 2.69
2148 2164 5.901884 CCGTATGCGTTGACTATTTGAAATC 59.098 40.000 1.69 0.00 36.15 2.17
2150 2166 6.841286 CGTATGCGTTGACTATTTGAAATCTC 59.159 38.462 0.00 0.00 0.00 2.75
2151 2167 6.992063 ATGCGTTGACTATTTGAAATCTCT 57.008 33.333 0.00 0.00 0.00 3.10
2152 2168 9.031360 GTATGCGTTGACTATTTGAAATCTCTA 57.969 33.333 0.00 0.00 0.00 2.43
2153 2169 7.525688 TGCGTTGACTATTTGAAATCTCTAG 57.474 36.000 0.00 0.00 0.00 2.43
2154 2170 7.320399 TGCGTTGACTATTTGAAATCTCTAGA 58.680 34.615 0.00 0.00 0.00 2.43
2175 2291 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2185 2301 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
2186 2302 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
2187 2303 5.767277 TTTAGGAACGGAGGGAGTATTTT 57.233 39.130 0.00 0.00 0.00 1.82
2188 2304 6.872585 TTTAGGAACGGAGGGAGTATTTTA 57.127 37.500 0.00 0.00 0.00 1.52
2321 2515 8.521170 AAAATCTGAGTTGATGATGATGATGT 57.479 30.769 0.00 0.00 0.00 3.06
2322 2516 7.497925 AATCTGAGTTGATGATGATGATGTG 57.502 36.000 0.00 0.00 0.00 3.21
2323 2517 4.814771 TCTGAGTTGATGATGATGATGTGC 59.185 41.667 0.00 0.00 0.00 4.57
2324 2518 3.881089 TGAGTTGATGATGATGATGTGCC 59.119 43.478 0.00 0.00 0.00 5.01
2325 2519 4.135306 GAGTTGATGATGATGATGTGCCT 58.865 43.478 0.00 0.00 0.00 4.75
2326 2520 3.883489 AGTTGATGATGATGATGTGCCTG 59.117 43.478 0.00 0.00 0.00 4.85
2327 2521 2.227194 TGATGATGATGATGTGCCTGC 58.773 47.619 0.00 0.00 0.00 4.85
2328 2522 1.540267 GATGATGATGATGTGCCTGCC 59.460 52.381 0.00 0.00 0.00 4.85
2329 2523 0.256464 TGATGATGATGTGCCTGCCA 59.744 50.000 0.00 0.00 0.00 4.92
2330 2524 1.133606 TGATGATGATGTGCCTGCCAT 60.134 47.619 0.00 0.00 0.00 4.40
2331 2525 1.540267 GATGATGATGTGCCTGCCATC 59.460 52.381 11.37 11.37 39.32 3.51
2332 2526 0.549469 TGATGATGTGCCTGCCATCT 59.451 50.000 16.28 6.98 39.54 2.90
2333 2527 1.064240 TGATGATGTGCCTGCCATCTT 60.064 47.619 16.28 12.20 39.54 2.40
2334 2528 2.029623 GATGATGTGCCTGCCATCTTT 58.970 47.619 16.28 8.24 39.54 2.52
2335 2529 1.466856 TGATGTGCCTGCCATCTTTC 58.533 50.000 16.28 0.00 39.54 2.62
2336 2530 1.272037 TGATGTGCCTGCCATCTTTCA 60.272 47.619 16.28 1.96 39.54 2.69
2337 2531 1.133790 GATGTGCCTGCCATCTTTCAC 59.866 52.381 11.13 0.00 36.59 3.18
2338 2532 0.895100 TGTGCCTGCCATCTTTCACC 60.895 55.000 0.00 0.00 0.00 4.02
2339 2533 0.895100 GTGCCTGCCATCTTTCACCA 60.895 55.000 0.00 0.00 0.00 4.17
2340 2534 0.178967 TGCCTGCCATCTTTCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
2341 2535 1.188863 GCCTGCCATCTTTCACCAAT 58.811 50.000 0.00 0.00 0.00 3.16
2342 2536 2.291475 TGCCTGCCATCTTTCACCAATA 60.291 45.455 0.00 0.00 0.00 1.90
2343 2537 2.360165 GCCTGCCATCTTTCACCAATAG 59.640 50.000 0.00 0.00 0.00 1.73
2344 2538 2.360165 CCTGCCATCTTTCACCAATAGC 59.640 50.000 0.00 0.00 0.00 2.97
2345 2539 2.360165 CTGCCATCTTTCACCAATAGCC 59.640 50.000 0.00 0.00 0.00 3.93
2346 2540 1.334869 GCCATCTTTCACCAATAGCCG 59.665 52.381 0.00 0.00 0.00 5.52
2347 2541 2.643551 CCATCTTTCACCAATAGCCGT 58.356 47.619 0.00 0.00 0.00 5.68
2348 2542 2.614057 CCATCTTTCACCAATAGCCGTC 59.386 50.000 0.00 0.00 0.00 4.79
2349 2543 3.270027 CATCTTTCACCAATAGCCGTCA 58.730 45.455 0.00 0.00 0.00 4.35
2350 2544 2.972625 TCTTTCACCAATAGCCGTCAG 58.027 47.619 0.00 0.00 0.00 3.51
2351 2545 2.565391 TCTTTCACCAATAGCCGTCAGA 59.435 45.455 0.00 0.00 0.00 3.27
2352 2546 3.197766 TCTTTCACCAATAGCCGTCAGAT 59.802 43.478 0.00 0.00 0.00 2.90
2353 2547 2.890808 TCACCAATAGCCGTCAGATC 57.109 50.000 0.00 0.00 0.00 2.75
2354 2548 2.388735 TCACCAATAGCCGTCAGATCT 58.611 47.619 0.00 0.00 0.00 2.75
2355 2549 3.562182 TCACCAATAGCCGTCAGATCTA 58.438 45.455 0.00 0.00 0.00 1.98
2356 2550 3.570125 TCACCAATAGCCGTCAGATCTAG 59.430 47.826 0.00 0.00 0.00 2.43
2357 2551 3.570125 CACCAATAGCCGTCAGATCTAGA 59.430 47.826 0.00 0.00 0.00 2.43
2358 2552 4.219507 CACCAATAGCCGTCAGATCTAGAT 59.780 45.833 4.47 4.47 0.00 1.98
2359 2553 4.461081 ACCAATAGCCGTCAGATCTAGATC 59.539 45.833 22.92 22.92 38.09 2.75
2374 2568 8.058667 AGATCTAGATCTGATGAATGCTACAG 57.941 38.462 30.29 0.00 45.77 2.74
2375 2569 7.670979 AGATCTAGATCTGATGAATGCTACAGT 59.329 37.037 30.29 4.17 45.77 3.55
2376 2570 7.594351 TCTAGATCTGATGAATGCTACAGTT 57.406 36.000 5.18 0.00 0.00 3.16
2377 2571 8.016301 TCTAGATCTGATGAATGCTACAGTTT 57.984 34.615 5.18 0.00 0.00 2.66
2378 2572 8.481314 TCTAGATCTGATGAATGCTACAGTTTT 58.519 33.333 5.18 0.00 0.00 2.43
2379 2573 7.317842 AGATCTGATGAATGCTACAGTTTTG 57.682 36.000 0.00 0.00 0.00 2.44
2380 2574 5.300969 TCTGATGAATGCTACAGTTTTGC 57.699 39.130 0.00 0.00 0.00 3.68
2381 2575 5.005740 TCTGATGAATGCTACAGTTTTGCT 58.994 37.500 0.00 0.00 0.00 3.91
2382 2576 6.172630 TCTGATGAATGCTACAGTTTTGCTA 58.827 36.000 0.00 0.00 0.00 3.49
2383 2577 6.654582 TCTGATGAATGCTACAGTTTTGCTAA 59.345 34.615 0.00 0.00 0.00 3.09
2384 2578 7.174772 TCTGATGAATGCTACAGTTTTGCTAAA 59.825 33.333 0.00 0.00 0.00 1.85
2385 2579 7.656412 TGATGAATGCTACAGTTTTGCTAAAA 58.344 30.769 0.00 0.00 0.00 1.52
2386 2580 7.809331 TGATGAATGCTACAGTTTTGCTAAAAG 59.191 33.333 0.00 0.00 0.00 2.27
2387 2581 7.270757 TGAATGCTACAGTTTTGCTAAAAGA 57.729 32.000 0.00 0.00 0.00 2.52
2388 2582 7.885297 TGAATGCTACAGTTTTGCTAAAAGAT 58.115 30.769 0.00 0.00 0.00 2.40
2389 2583 7.809331 TGAATGCTACAGTTTTGCTAAAAGATG 59.191 33.333 0.00 0.00 0.00 2.90
2390 2584 6.633500 TGCTACAGTTTTGCTAAAAGATGT 57.367 33.333 10.53 10.53 36.24 3.06
2391 2585 6.668323 TGCTACAGTTTTGCTAAAAGATGTC 58.332 36.000 9.48 1.26 34.86 3.06
2392 2586 6.086871 GCTACAGTTTTGCTAAAAGATGTCC 58.913 40.000 9.48 2.43 34.86 4.02
2393 2587 5.108385 ACAGTTTTGCTAAAAGATGTCCG 57.892 39.130 0.00 0.00 30.05 4.79
2394 2588 3.914364 CAGTTTTGCTAAAAGATGTCCGC 59.086 43.478 0.00 0.00 0.00 5.54
2395 2589 3.568007 AGTTTTGCTAAAAGATGTCCGCA 59.432 39.130 0.00 0.00 0.00 5.69
2396 2590 3.552604 TTTGCTAAAAGATGTCCGCAC 57.447 42.857 0.00 0.00 0.00 5.34
2397 2591 2.472695 TGCTAAAAGATGTCCGCACT 57.527 45.000 0.00 0.00 0.00 4.40
2398 2592 2.778299 TGCTAAAAGATGTCCGCACTT 58.222 42.857 0.00 0.00 0.00 3.16
2399 2593 2.483877 TGCTAAAAGATGTCCGCACTTG 59.516 45.455 0.00 0.00 0.00 3.16
2400 2594 2.484264 GCTAAAAGATGTCCGCACTTGT 59.516 45.455 0.00 0.00 0.00 3.16
2401 2595 3.058224 GCTAAAAGATGTCCGCACTTGTT 60.058 43.478 0.00 0.00 0.00 2.83
2402 2596 4.556699 GCTAAAAGATGTCCGCACTTGTTT 60.557 41.667 0.00 0.00 0.00 2.83
2403 2597 3.626028 AAAGATGTCCGCACTTGTTTC 57.374 42.857 0.00 0.00 0.00 2.78
2404 2598 1.523758 AGATGTCCGCACTTGTTTCC 58.476 50.000 0.00 0.00 0.00 3.13
2405 2599 1.202758 AGATGTCCGCACTTGTTTCCA 60.203 47.619 0.00 0.00 0.00 3.53
2406 2600 1.812571 GATGTCCGCACTTGTTTCCAT 59.187 47.619 0.00 0.00 0.00 3.41
2407 2601 2.552599 TGTCCGCACTTGTTTCCATA 57.447 45.000 0.00 0.00 0.00 2.74
2408 2602 3.066291 TGTCCGCACTTGTTTCCATAT 57.934 42.857 0.00 0.00 0.00 1.78
2409 2603 2.746904 TGTCCGCACTTGTTTCCATATG 59.253 45.455 0.00 0.00 0.00 1.78
2410 2604 2.747446 GTCCGCACTTGTTTCCATATGT 59.253 45.455 1.24 0.00 0.00 2.29
2411 2605 3.936453 GTCCGCACTTGTTTCCATATGTA 59.064 43.478 1.24 0.00 0.00 2.29
2412 2606 3.936453 TCCGCACTTGTTTCCATATGTAC 59.064 43.478 1.24 0.00 0.00 2.90
2413 2607 3.687212 CCGCACTTGTTTCCATATGTACA 59.313 43.478 0.00 0.00 0.00 2.90
2414 2608 4.155099 CCGCACTTGTTTCCATATGTACAA 59.845 41.667 0.00 8.21 0.00 2.41
2415 2609 5.335269 CCGCACTTGTTTCCATATGTACAAA 60.335 40.000 0.00 3.37 30.87 2.83
2416 2610 5.567534 CGCACTTGTTTCCATATGTACAAAC 59.432 40.000 0.00 12.65 30.87 2.93
2417 2611 6.442952 GCACTTGTTTCCATATGTACAAACA 58.557 36.000 15.64 15.64 40.69 2.83
2418 2612 6.920758 GCACTTGTTTCCATATGTACAAACAA 59.079 34.615 23.08 23.08 43.21 2.83
2419 2613 7.096230 GCACTTGTTTCCATATGTACAAACAAC 60.096 37.037 21.88 14.51 41.52 3.32
2420 2614 8.134895 CACTTGTTTCCATATGTACAAACAACT 58.865 33.333 21.88 15.36 41.52 3.16
2421 2615 8.349983 ACTTGTTTCCATATGTACAAACAACTC 58.650 33.333 21.88 0.00 41.52 3.01
2422 2616 7.809546 TGTTTCCATATGTACAAACAACTCA 57.190 32.000 16.62 0.00 39.58 3.41
2423 2617 8.402798 TGTTTCCATATGTACAAACAACTCAT 57.597 30.769 16.62 0.00 39.58 2.90
2424 2618 8.855110 TGTTTCCATATGTACAAACAACTCATT 58.145 29.630 16.62 0.00 39.58 2.57
2425 2619 9.128107 GTTTCCATATGTACAAACAACTCATTG 57.872 33.333 0.00 0.00 39.58 2.82
2447 2641 6.611613 TGTCTCTCACAATCAACCTTATCT 57.388 37.500 0.00 0.00 29.30 1.98
2448 2642 6.634805 TGTCTCTCACAATCAACCTTATCTC 58.365 40.000 0.00 0.00 29.30 2.75
2449 2643 6.438741 TGTCTCTCACAATCAACCTTATCTCT 59.561 38.462 0.00 0.00 29.30 3.10
2450 2644 7.038729 TGTCTCTCACAATCAACCTTATCTCTT 60.039 37.037 0.00 0.00 29.30 2.85
2451 2645 7.491048 GTCTCTCACAATCAACCTTATCTCTTC 59.509 40.741 0.00 0.00 0.00 2.87
2452 2646 6.644347 TCTCACAATCAACCTTATCTCTTCC 58.356 40.000 0.00 0.00 0.00 3.46
2453 2647 5.745227 TCACAATCAACCTTATCTCTTCCC 58.255 41.667 0.00 0.00 0.00 3.97
2454 2648 4.884164 CACAATCAACCTTATCTCTTCCCC 59.116 45.833 0.00 0.00 0.00 4.81
2455 2649 4.540099 ACAATCAACCTTATCTCTTCCCCA 59.460 41.667 0.00 0.00 0.00 4.96
2456 2650 4.779993 ATCAACCTTATCTCTTCCCCAC 57.220 45.455 0.00 0.00 0.00 4.61
2457 2651 2.844348 TCAACCTTATCTCTTCCCCACC 59.156 50.000 0.00 0.00 0.00 4.61
2458 2652 1.497161 ACCTTATCTCTTCCCCACCG 58.503 55.000 0.00 0.00 0.00 4.94
2459 2653 0.106894 CCTTATCTCTTCCCCACCGC 59.893 60.000 0.00 0.00 0.00 5.68
2460 2654 0.830648 CTTATCTCTTCCCCACCGCA 59.169 55.000 0.00 0.00 0.00 5.69
2461 2655 1.417890 CTTATCTCTTCCCCACCGCAT 59.582 52.381 0.00 0.00 0.00 4.73
2462 2656 1.048601 TATCTCTTCCCCACCGCATC 58.951 55.000 0.00 0.00 0.00 3.91
2463 2657 1.700042 ATCTCTTCCCCACCGCATCC 61.700 60.000 0.00 0.00 0.00 3.51
2464 2658 2.609299 TCTTCCCCACCGCATCCA 60.609 61.111 0.00 0.00 0.00 3.41
2465 2659 2.124570 CTTCCCCACCGCATCCAG 60.125 66.667 0.00 0.00 0.00 3.86
2466 2660 2.609299 TTCCCCACCGCATCCAGA 60.609 61.111 0.00 0.00 0.00 3.86
2467 2661 2.196997 CTTCCCCACCGCATCCAGAA 62.197 60.000 0.00 0.00 0.00 3.02
2468 2662 2.124570 CCCCACCGCATCCAGAAG 60.125 66.667 0.00 0.00 0.00 2.85
2469 2663 2.124570 CCCACCGCATCCAGAAGG 60.125 66.667 0.00 0.00 0.00 3.46
2470 2664 2.825836 CCACCGCATCCAGAAGGC 60.826 66.667 0.00 0.00 33.74 4.35
2471 2665 2.825836 CACCGCATCCAGAAGGCC 60.826 66.667 0.00 0.00 33.74 5.19
2472 2666 3.329889 ACCGCATCCAGAAGGCCA 61.330 61.111 5.01 0.00 33.74 5.36
2473 2667 2.194056 CCGCATCCAGAAGGCCAT 59.806 61.111 5.01 0.00 33.74 4.40
2474 2668 2.191513 CCGCATCCAGAAGGCCATG 61.192 63.158 5.01 0.00 33.74 3.66
2475 2669 2.191513 CGCATCCAGAAGGCCATGG 61.192 63.158 7.63 7.63 37.97 3.66
2479 2673 2.473768 TCCAGAAGGCCATGGAACA 58.526 52.632 18.40 0.57 42.61 3.18
2480 2674 0.776810 TCCAGAAGGCCATGGAACAA 59.223 50.000 18.40 0.25 42.61 2.83
2481 2675 1.358787 TCCAGAAGGCCATGGAACAAT 59.641 47.619 18.40 0.20 42.61 2.71
2482 2676 2.885137 TCCAGAAGGCCATGGAACAATG 60.885 50.000 18.40 7.81 42.61 2.82
2483 2677 5.421128 TCCAGAAGGCCATGGAACAATGT 62.421 47.826 18.40 0.00 42.61 2.71
2493 2687 2.237643 TGGAACAATGTGGTGTGATGG 58.762 47.619 0.00 0.00 31.92 3.51
2494 2688 1.067635 GGAACAATGTGGTGTGATGGC 60.068 52.381 0.00 0.00 0.00 4.40
2495 2689 0.968405 AACAATGTGGTGTGATGGCC 59.032 50.000 0.00 0.00 0.00 5.36
2496 2690 1.243342 ACAATGTGGTGTGATGGCCG 61.243 55.000 0.00 0.00 0.00 6.13
2497 2691 2.342650 AATGTGGTGTGATGGCCGC 61.343 57.895 0.00 0.00 35.93 6.53
2498 2692 2.769652 AATGTGGTGTGATGGCCGCT 62.770 55.000 0.00 0.00 36.33 5.52
2499 2693 3.434319 GTGGTGTGATGGCCGCTG 61.434 66.667 0.00 0.00 32.87 5.18
2521 2715 4.733542 CGCCGTCCACCCCCAATT 62.734 66.667 0.00 0.00 0.00 2.32
2522 2716 2.283604 GCCGTCCACCCCCAATTT 60.284 61.111 0.00 0.00 0.00 1.82
2523 2717 1.911269 GCCGTCCACCCCCAATTTT 60.911 57.895 0.00 0.00 0.00 1.82
2524 2718 1.971418 CCGTCCACCCCCAATTTTG 59.029 57.895 0.00 0.00 0.00 2.44
2528 2722 0.266152 TCCACCCCCAATTTTGGTGT 59.734 50.000 13.82 2.81 46.49 4.16
2529 2723 1.135960 CCACCCCCAATTTTGGTGTT 58.864 50.000 13.82 0.00 46.49 3.32
2530 2724 1.071542 CCACCCCCAATTTTGGTGTTC 59.928 52.381 13.82 0.00 46.49 3.18
2531 2725 4.198371 CCACCCCCAATTTTGGTGTTCC 62.198 54.545 13.82 0.00 46.49 3.62
2535 2729 1.496934 CCAATTTTGGTGTTCCGTGC 58.503 50.000 0.95 0.00 43.43 5.34
2536 2730 1.202463 CCAATTTTGGTGTTCCGTGCA 60.202 47.619 0.95 0.00 43.43 4.57
2537 2731 2.126467 CAATTTTGGTGTTCCGTGCAG 58.874 47.619 0.00 0.00 36.30 4.41
2538 2732 1.398692 ATTTTGGTGTTCCGTGCAGT 58.601 45.000 0.00 0.00 36.30 4.40
2539 2733 0.453793 TTTTGGTGTTCCGTGCAGTG 59.546 50.000 0.00 0.00 36.30 3.66
2540 2734 1.999071 TTTGGTGTTCCGTGCAGTGC 61.999 55.000 8.58 8.58 36.30 4.40
2541 2735 2.899838 GGTGTTCCGTGCAGTGCA 60.900 61.111 15.37 15.37 35.60 4.57
3150 3428 7.912773 GCAGAAAAAGAAGAAGCCAATAGATAC 59.087 37.037 0.00 0.00 0.00 2.24
3164 3442 7.826252 AGCCAATAGATACGATTTGATGCTTAT 59.174 33.333 0.00 0.00 0.00 1.73
3410 3688 6.941857 TGATTAGTCATTGCTTAGGTGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
3570 3848 7.883229 TTTGTTTCCTTCAACTCTTGTTTTC 57.117 32.000 0.00 0.00 33.52 2.29
3584 3862 6.003234 TCTTGTTTTCTTTTGTGTGTCGAA 57.997 33.333 0.00 0.00 0.00 3.71
3620 3898 9.013229 TCTTGTTAATATTGTGTTGCAGATCTT 57.987 29.630 0.00 0.00 0.00 2.40
4129 4407 6.365970 ACTCACATATATCATCCCAAGGTC 57.634 41.667 0.00 0.00 0.00 3.85
4313 4591 6.671605 TCTCAATTGGTATCATCATGGGAAA 58.328 36.000 5.42 0.00 0.00 3.13
4499 4777 2.535012 TTGTGTTGACATCGTGGCTA 57.465 45.000 0.00 0.00 30.13 3.93
4850 5128 2.695147 GGGCATCAATTTCTACAAGGGG 59.305 50.000 0.00 0.00 0.00 4.79
4916 5194 2.363683 GCAGGCTGCTAAATGAACTCT 58.636 47.619 31.37 0.00 40.96 3.24
4918 5196 2.941720 CAGGCTGCTAAATGAACTCTCC 59.058 50.000 0.00 0.00 0.00 3.71
5324 5603 3.056465 AGAAAAGGAGTGAGGAAGCTACG 60.056 47.826 0.00 0.00 0.00 3.51
5343 5622 4.360951 ACGTTTACTCCCCAAATTCTCA 57.639 40.909 0.00 0.00 0.00 3.27
5481 5760 3.267812 TGGATTTGAATCTCTTGCCTCCT 59.732 43.478 3.94 0.00 35.73 3.69
5617 5896 9.524496 TTCCTGTAGTAACTAATGACTAGACAA 57.476 33.333 0.00 0.00 0.00 3.18
6001 6281 6.159293 TGTGCTGATAGTTCTTTGTGTAGAG 58.841 40.000 0.00 0.00 0.00 2.43
6138 7538 6.481434 AACTACTACTTTACAGGCTATGGG 57.519 41.667 0.00 0.00 0.00 4.00
6341 7856 8.913487 ATTTTCTGGAAAAAGCAATCAAGAAT 57.087 26.923 11.69 0.00 42.71 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.550130 ATCCAAGAAAGTCCGGCCGA 61.550 55.000 30.73 10.38 0.00 5.54
44 45 1.821136 CCCAAGCATCCAAGAAAGTCC 59.179 52.381 0.00 0.00 0.00 3.85
109 110 1.338136 ATCTAACAGGAGGGGCACGG 61.338 60.000 0.00 0.00 0.00 4.94
110 111 1.410004 TATCTAACAGGAGGGGCACG 58.590 55.000 0.00 0.00 0.00 5.34
120 121 4.897509 TGATGCCCCTCATATCTAACAG 57.102 45.455 0.00 0.00 35.05 3.16
165 166 1.288439 CGGAGATCTGGATCAGCCG 59.712 63.158 21.10 21.10 44.87 5.52
185 186 0.101399 AATAGCTCTGAGCACGGACG 59.899 55.000 29.49 0.00 45.56 4.79
190 191 1.156645 CCGCCAATAGCTCTGAGCAC 61.157 60.000 29.49 11.48 45.56 4.40
196 197 2.911143 CCCACCGCCAATAGCTCT 59.089 61.111 0.00 0.00 40.39 4.09
226 227 3.015145 GGGCAAGCTCCTACCCCA 61.015 66.667 2.60 0.00 36.24 4.96
228 229 4.176752 CCGGGCAAGCTCCTACCC 62.177 72.222 0.00 3.75 39.12 3.69
246 247 2.506472 GTCGGCCAGAGATTCCCC 59.494 66.667 2.24 0.00 0.00 4.81
249 250 2.586357 GCCGTCGGCCAGAGATTC 60.586 66.667 26.23 0.00 44.06 2.52
298 299 1.757118 CGCTACCAAGGAGGAGAATGA 59.243 52.381 0.00 0.00 41.22 2.57
332 333 0.912006 GGGAGAAAGGAGCAGGAGGT 60.912 60.000 0.00 0.00 0.00 3.85
340 341 0.251634 GGCACAGAGGGAGAAAGGAG 59.748 60.000 0.00 0.00 0.00 3.69
362 363 1.066358 CGAGGAACTAGGGGTTTCACC 60.066 57.143 0.00 0.00 41.55 4.02
429 431 3.051803 TCCTCCATCTCATACCCAAGACT 60.052 47.826 0.00 0.00 0.00 3.24
465 467 1.864862 GGCATCGGAATGATCTGCG 59.135 57.895 0.00 0.00 34.13 5.18
491 493 1.825285 CGATAGATGCCACAGCGCAC 61.825 60.000 11.47 0.00 42.70 5.34
496 498 1.154197 CCATGCGATAGATGCCACAG 58.846 55.000 0.00 0.00 39.76 3.66
511 513 2.969238 GACTCGCCATCGCCCATG 60.969 66.667 0.00 0.00 35.26 3.66
512 514 4.241555 GGACTCGCCATCGCCCAT 62.242 66.667 0.00 0.00 36.34 4.00
557 559 1.827789 GCCACCACAAAGCTGGACA 60.828 57.895 0.00 0.00 35.04 4.02
561 563 1.210931 CGATGCCACCACAAAGCTG 59.789 57.895 0.00 0.00 0.00 4.24
562 564 1.073025 TCGATGCCACCACAAAGCT 59.927 52.632 0.00 0.00 0.00 3.74
565 567 1.069935 TCGTCGATGCCACCACAAA 59.930 52.632 0.00 0.00 0.00 2.83
567 569 2.048597 GTCGTCGATGCCACCACA 60.049 61.111 0.00 0.00 0.00 4.17
571 573 1.626654 CCAACTGTCGTCGATGCCAC 61.627 60.000 0.00 0.00 0.00 5.01
590 592 1.896220 TGCATTGACCTTGTCAGTCC 58.104 50.000 0.00 0.00 43.69 3.85
614 616 5.055265 TGTTGTCCCAATTTTAGGTGAGA 57.945 39.130 0.00 0.00 0.00 3.27
625 627 3.324556 CCACCATCTTTTGTTGTCCCAAT 59.675 43.478 0.00 0.00 0.00 3.16
633 635 2.470057 ACCCACCACCATCTTTTGTT 57.530 45.000 0.00 0.00 0.00 2.83
637 639 1.203050 CCAGAACCCACCACCATCTTT 60.203 52.381 0.00 0.00 0.00 2.52
643 645 2.034221 GCTCCAGAACCCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
645 647 2.847234 ACGCTCCAGAACCCACCA 60.847 61.111 0.00 0.00 0.00 4.17
656 658 2.669569 ACCACATGCACACGCTCC 60.670 61.111 0.00 0.00 39.64 4.70
681 683 4.746951 CGCAGCACGCACCACATG 62.747 66.667 0.00 0.00 42.60 3.21
685 687 3.384275 ATATCCGCAGCACGCACCA 62.384 57.895 0.00 0.00 42.60 4.17
686 688 2.588877 ATATCCGCAGCACGCACC 60.589 61.111 0.00 0.00 42.60 5.01
687 689 1.705337 AACATATCCGCAGCACGCAC 61.705 55.000 0.00 0.00 42.60 5.34
688 690 0.179097 TAACATATCCGCAGCACGCA 60.179 50.000 0.00 0.00 42.60 5.24
689 691 0.508641 CTAACATATCCGCAGCACGC 59.491 55.000 0.00 0.00 41.76 5.34
690 692 1.787155 GTCTAACATATCCGCAGCACG 59.213 52.381 0.00 0.00 43.15 5.34
691 693 2.135933 GGTCTAACATATCCGCAGCAC 58.864 52.381 0.00 0.00 0.00 4.40
692 694 1.760029 TGGTCTAACATATCCGCAGCA 59.240 47.619 0.00 0.00 0.00 4.41
693 695 2.224066 ACTGGTCTAACATATCCGCAGC 60.224 50.000 0.00 0.00 0.00 5.25
694 696 3.735237 ACTGGTCTAACATATCCGCAG 57.265 47.619 0.00 0.00 0.00 5.18
695 697 3.449377 TCAACTGGTCTAACATATCCGCA 59.551 43.478 0.00 0.00 0.00 5.69
696 698 4.054780 TCAACTGGTCTAACATATCCGC 57.945 45.455 0.00 0.00 0.00 5.54
697 699 5.842907 TCATCAACTGGTCTAACATATCCG 58.157 41.667 0.00 0.00 0.00 4.18
698 700 7.675062 AGATCATCAACTGGTCTAACATATCC 58.325 38.462 0.00 0.00 43.79 2.59
699 701 8.986847 CAAGATCATCAACTGGTCTAACATATC 58.013 37.037 0.00 0.00 44.90 1.63
700 702 7.935755 CCAAGATCATCAACTGGTCTAACATAT 59.064 37.037 0.00 0.00 44.90 1.78
701 703 7.275183 CCAAGATCATCAACTGGTCTAACATA 58.725 38.462 0.00 0.00 44.90 2.29
702 704 6.118170 CCAAGATCATCAACTGGTCTAACAT 58.882 40.000 0.00 0.00 44.90 2.71
703 705 5.491070 CCAAGATCATCAACTGGTCTAACA 58.509 41.667 0.00 0.00 44.90 2.41
704 706 4.333926 GCCAAGATCATCAACTGGTCTAAC 59.666 45.833 0.00 0.00 44.90 2.34
705 707 4.517285 GCCAAGATCATCAACTGGTCTAA 58.483 43.478 0.00 0.00 44.90 2.10
712 714 1.684248 GGCAGGCCAAGATCATCAACT 60.684 52.381 5.01 0.00 35.81 3.16
733 735 1.307647 CCTTACCAAGCTGCCCCAT 59.692 57.895 0.00 0.00 0.00 4.00
741 743 0.107165 ATTCGGAGGCCTTACCAAGC 60.107 55.000 6.77 0.00 43.14 4.01
748 750 3.054361 ACAACATCTAATTCGGAGGCCTT 60.054 43.478 6.77 0.00 0.00 4.35
754 756 2.967362 ACGCACAACATCTAATTCGGA 58.033 42.857 0.00 0.00 0.00 4.55
768 770 0.948141 TGATCACGCATCAACGCACA 60.948 50.000 0.00 0.00 38.68 4.57
801 803 6.071896 TCCTAACGATCTATGTTGCTATGGAG 60.072 42.308 0.00 0.00 0.00 3.86
802 804 5.773176 TCCTAACGATCTATGTTGCTATGGA 59.227 40.000 0.00 0.00 0.00 3.41
803 805 6.025749 TCCTAACGATCTATGTTGCTATGG 57.974 41.667 0.00 0.00 0.00 2.74
804 806 6.587990 CCTTCCTAACGATCTATGTTGCTATG 59.412 42.308 0.00 0.00 0.00 2.23
822 825 5.664457 GGACTAATCTAAACCCACCTTCCTA 59.336 44.000 0.00 0.00 0.00 2.94
823 826 4.473922 GGACTAATCTAAACCCACCTTCCT 59.526 45.833 0.00 0.00 0.00 3.36
837 840 8.697507 ACAAAAGAAAAGACATGGACTAATCT 57.302 30.769 0.00 1.47 0.00 2.40
841 844 6.826231 TGTGACAAAAGAAAAGACATGGACTA 59.174 34.615 0.00 0.00 0.00 2.59
843 846 5.743872 GTGTGACAAAAGAAAAGACATGGAC 59.256 40.000 0.00 0.00 0.00 4.02
864 867 9.706691 CACCATATTTATTATTCCGTAGAGTGT 57.293 33.333 0.00 0.00 0.00 3.55
869 872 8.227791 GCACACACCATATTTATTATTCCGTAG 58.772 37.037 0.00 0.00 0.00 3.51
870 873 7.715686 TGCACACACCATATTTATTATTCCGTA 59.284 33.333 0.00 0.00 0.00 4.02
871 874 6.544197 TGCACACACCATATTTATTATTCCGT 59.456 34.615 0.00 0.00 0.00 4.69
872 875 6.964908 TGCACACACCATATTTATTATTCCG 58.035 36.000 0.00 0.00 0.00 4.30
873 876 7.750458 CGATGCACACACCATATTTATTATTCC 59.250 37.037 0.00 0.00 0.00 3.01
900 905 2.429610 GCTAACCCCACTTCTACATCGA 59.570 50.000 0.00 0.00 0.00 3.59
901 906 2.483188 GGCTAACCCCACTTCTACATCG 60.483 54.545 0.00 0.00 0.00 3.84
902 907 2.772515 AGGCTAACCCCACTTCTACATC 59.227 50.000 0.00 0.00 36.11 3.06
903 908 2.846950 AGGCTAACCCCACTTCTACAT 58.153 47.619 0.00 0.00 36.11 2.29
904 909 2.337359 AGGCTAACCCCACTTCTACA 57.663 50.000 0.00 0.00 36.11 2.74
905 910 2.838813 AGAAGGCTAACCCCACTTCTAC 59.161 50.000 4.15 0.00 45.55 2.59
906 911 3.200958 AGAAGGCTAACCCCACTTCTA 57.799 47.619 4.15 0.00 45.55 2.10
907 912 2.046280 AGAAGGCTAACCCCACTTCT 57.954 50.000 0.00 0.00 43.39 2.85
908 913 2.881111 AAGAAGGCTAACCCCACTTC 57.119 50.000 0.00 0.00 39.59 3.01
909 914 3.612795 AAAAGAAGGCTAACCCCACTT 57.387 42.857 0.00 0.00 36.11 3.16
911 916 4.296621 TCTAAAAGAAGGCTAACCCCAC 57.703 45.455 0.00 0.00 36.11 4.61
912 917 5.073965 TCTTTCTAAAAGAAGGCTAACCCCA 59.926 40.000 0.00 0.00 35.37 4.96
913 918 5.567430 TCTTTCTAAAAGAAGGCTAACCCC 58.433 41.667 0.00 0.00 35.37 4.95
977 982 8.870879 ACATTTTCCGTTTCGAAACATTTAAAA 58.129 25.926 33.45 28.64 38.81 1.52
978 983 8.408743 ACATTTTCCGTTTCGAAACATTTAAA 57.591 26.923 33.45 25.89 38.81 1.52
979 984 7.988904 ACATTTTCCGTTTCGAAACATTTAA 57.011 28.000 33.45 23.02 38.81 1.52
980 985 7.988904 AACATTTTCCGTTTCGAAACATTTA 57.011 28.000 33.45 18.22 38.81 1.40
981 986 6.895607 AACATTTTCCGTTTCGAAACATTT 57.104 29.167 33.45 14.38 38.81 2.32
982 987 6.895607 AAACATTTTCCGTTTCGAAACATT 57.104 29.167 33.45 13.00 38.81 2.71
983 988 7.988904 TTAAACATTTTCCGTTTCGAAACAT 57.011 28.000 33.45 19.83 38.81 2.71
984 989 7.807687 TTTAAACATTTTCCGTTTCGAAACA 57.192 28.000 33.45 18.59 38.81 2.83
985 990 8.322428 ACATTTAAACATTTTCCGTTTCGAAAC 58.678 29.630 27.37 27.37 37.69 2.78
986 991 8.408743 ACATTTAAACATTTTCCGTTTCGAAA 57.591 26.923 6.47 6.47 37.69 3.46
987 992 7.988904 ACATTTAAACATTTTCCGTTTCGAA 57.011 28.000 0.00 0.00 37.69 3.71
988 993 7.988904 AACATTTAAACATTTTCCGTTTCGA 57.011 28.000 0.00 0.00 37.69 3.71
989 994 8.674400 GAAACATTTAAACATTTTCCGTTTCG 57.326 30.769 0.00 0.00 37.69 3.46
990 995 8.533153 TCGAAACATTTAAACATTTTCCGTTTC 58.467 29.630 0.00 0.00 37.69 2.78
991 996 8.408743 TCGAAACATTTAAACATTTTCCGTTT 57.591 26.923 10.31 0.00 39.75 3.60
992 997 7.988904 TCGAAACATTTAAACATTTTCCGTT 57.011 28.000 10.31 0.00 0.00 4.44
993 998 7.988904 TTCGAAACATTTAAACATTTTCCGT 57.011 28.000 0.00 0.00 0.00 4.69
994 999 7.521244 CGTTTCGAAACATTTAAACATTTTCCG 59.479 33.333 33.45 14.52 38.81 4.30
995 1000 7.790216 CCGTTTCGAAACATTTAAACATTTTCC 59.210 33.333 33.45 7.34 38.81 3.13
996 1001 8.533153 TCCGTTTCGAAACATTTAAACATTTTC 58.467 29.630 33.45 7.69 38.81 2.29
997 1002 8.408743 TCCGTTTCGAAACATTTAAACATTTT 57.591 26.923 33.45 0.00 38.81 1.82
998 1003 7.988904 TCCGTTTCGAAACATTTAAACATTT 57.011 28.000 33.45 0.00 38.81 2.32
999 1004 7.988904 TTCCGTTTCGAAACATTTAAACATT 57.011 28.000 33.45 0.00 38.81 2.71
1000 1005 7.988904 TTTCCGTTTCGAAACATTTAAACAT 57.011 28.000 33.45 0.00 38.81 2.71
1001 1006 7.807687 TTTTCCGTTTCGAAACATTTAAACA 57.192 28.000 33.45 14.23 38.81 2.83
1002 1007 8.322428 ACATTTTCCGTTTCGAAACATTTAAAC 58.678 29.630 33.45 11.38 38.81 2.01
1044 1049 6.270064 TCGTGAAACATTTCCTTTCCTTTTC 58.730 36.000 2.00 0.00 35.74 2.29
1045 1050 6.215495 TCGTGAAACATTTCCTTTCCTTTT 57.785 33.333 2.00 0.00 35.74 2.27
1046 1051 5.736207 GCTCGTGAAACATTTCCTTTCCTTT 60.736 40.000 2.00 0.00 35.74 3.11
1047 1052 4.261614 GCTCGTGAAACATTTCCTTTCCTT 60.262 41.667 2.00 0.00 35.74 3.36
1048 1053 3.253432 GCTCGTGAAACATTTCCTTTCCT 59.747 43.478 2.00 0.00 35.74 3.36
1081 1089 0.402121 GTGGGCCTGGGGATATCTTC 59.598 60.000 4.53 0.00 0.00 2.87
1316 1329 1.700955 GGGACTGGGATCTAGCGTTA 58.299 55.000 0.00 0.00 0.00 3.18
1333 1346 3.470888 CCGTGAGTAGGCTGGGGG 61.471 72.222 0.00 0.00 0.00 5.40
1365 1378 3.640000 GTGATCGGCGGCGGATTG 61.640 66.667 31.73 2.49 0.00 2.67
1764 1777 1.127567 TCACCACCTCCCACTCCTTG 61.128 60.000 0.00 0.00 0.00 3.61
1765 1778 0.401395 TTCACCACCTCCCACTCCTT 60.401 55.000 0.00 0.00 0.00 3.36
1766 1779 0.838122 CTTCACCACCTCCCACTCCT 60.838 60.000 0.00 0.00 0.00 3.69
1914 1930 2.472886 GCACGTCATCATTCACTGTTCG 60.473 50.000 0.00 0.00 0.00 3.95
2024 2040 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2026 2042 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2027 2043 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2044 2060 8.927721 GTCACTATTTGAAACCTCTAGAAAGAC 58.072 37.037 0.00 0.00 35.39 3.01
2045 2061 8.871125 AGTCACTATTTGAAACCTCTAGAAAGA 58.129 33.333 0.00 0.00 35.39 2.52
2048 2064 9.085645 TGTAGTCACTATTTGAAACCTCTAGAA 57.914 33.333 0.00 0.00 35.39 2.10
2049 2065 8.645814 TGTAGTCACTATTTGAAACCTCTAGA 57.354 34.615 0.00 0.00 35.39 2.43
2052 2068 7.974501 CGTATGTAGTCACTATTTGAAACCTCT 59.025 37.037 0.00 0.00 35.39 3.69
2053 2069 7.222224 CCGTATGTAGTCACTATTTGAAACCTC 59.778 40.741 0.00 0.00 35.39 3.85
2054 2070 7.039882 CCGTATGTAGTCACTATTTGAAACCT 58.960 38.462 0.00 0.00 35.39 3.50
2055 2071 7.037438 TCCGTATGTAGTCACTATTTGAAACC 58.963 38.462 0.00 0.00 35.39 3.27
2056 2072 8.378421 GTTCCGTATGTAGTCACTATTTGAAAC 58.622 37.037 0.00 0.00 35.39 2.78
2057 2073 8.089597 TGTTCCGTATGTAGTCACTATTTGAAA 58.910 33.333 0.00 0.00 35.39 2.69
2058 2074 7.604549 TGTTCCGTATGTAGTCACTATTTGAA 58.395 34.615 0.00 0.00 35.39 2.69
2060 2076 7.821595 TTGTTCCGTATGTAGTCACTATTTG 57.178 36.000 0.00 0.00 0.00 2.32
2061 2077 8.836268 TTTTGTTCCGTATGTAGTCACTATTT 57.164 30.769 0.00 0.00 0.00 1.40
2062 2078 8.879759 CATTTTGTTCCGTATGTAGTCACTATT 58.120 33.333 0.00 0.00 0.00 1.73
2063 2079 8.255206 TCATTTTGTTCCGTATGTAGTCACTAT 58.745 33.333 0.00 0.00 0.00 2.12
2065 2081 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
2066 2082 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
2067 2083 6.460781 ACTCATTTTGTTCCGTATGTAGTCA 58.539 36.000 0.00 0.00 0.00 3.41
2068 2084 6.963049 ACTCATTTTGTTCCGTATGTAGTC 57.037 37.500 0.00 0.00 0.00 2.59
2069 2085 8.836268 TTTACTCATTTTGTTCCGTATGTAGT 57.164 30.769 0.00 0.00 0.00 2.73
2070 2086 9.916397 GATTTACTCATTTTGTTCCGTATGTAG 57.084 33.333 0.00 0.00 0.00 2.74
2071 2087 9.661563 AGATTTACTCATTTTGTTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
2073 2089 9.916397 GTAGATTTACTCATTTTGTTCCGTATG 57.084 33.333 0.00 0.00 0.00 2.39
2074 2090 9.661563 TGTAGATTTACTCATTTTGTTCCGTAT 57.338 29.630 0.00 0.00 0.00 3.06
2075 2091 8.928733 GTGTAGATTTACTCATTTTGTTCCGTA 58.071 33.333 0.00 0.00 0.00 4.02
2076 2092 7.660208 AGTGTAGATTTACTCATTTTGTTCCGT 59.340 33.333 0.00 0.00 0.00 4.69
2077 2093 8.029642 AGTGTAGATTTACTCATTTTGTTCCG 57.970 34.615 0.00 0.00 0.00 4.30
2078 2094 9.220767 AGAGTGTAGATTTACTCATTTTGTTCC 57.779 33.333 7.09 0.00 44.41 3.62
2109 2125 7.797038 ACGCATACGGATGTATATAGACATA 57.203 36.000 12.82 0.00 46.04 2.29
2111 2127 6.149807 TCAACGCATACGGATGTATATAGACA 59.850 38.462 9.90 2.07 46.04 3.41
2112 2128 6.468319 GTCAACGCATACGGATGTATATAGAC 59.532 42.308 9.90 6.86 46.04 2.59
2113 2129 6.373495 AGTCAACGCATACGGATGTATATAGA 59.627 38.462 9.90 0.00 46.04 1.98
2114 2130 6.552629 AGTCAACGCATACGGATGTATATAG 58.447 40.000 9.90 0.00 46.04 1.31
2115 2131 6.505044 AGTCAACGCATACGGATGTATATA 57.495 37.500 9.90 0.00 46.04 0.86
2123 2139 4.112716 TCAAATAGTCAACGCATACGGA 57.887 40.909 0.00 0.00 46.04 4.69
2124 2140 4.850859 TTCAAATAGTCAACGCATACGG 57.149 40.909 0.00 0.00 46.04 4.02
2126 2142 7.910304 AGAGATTTCAAATAGTCAACGCATAC 58.090 34.615 0.00 0.00 0.00 2.39
2127 2143 9.249457 CTAGAGATTTCAAATAGTCAACGCATA 57.751 33.333 0.00 0.00 0.00 3.14
2129 2145 7.320399 TCTAGAGATTTCAAATAGTCAACGCA 58.680 34.615 0.00 0.00 0.00 5.24
2130 2146 7.757097 TCTAGAGATTTCAAATAGTCAACGC 57.243 36.000 0.00 0.00 0.00 4.84
2150 2166 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2151 2167 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2152 2168 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2153 2169 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2154 2170 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2157 2173 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2158 2174 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2159 2175 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2161 2177 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2162 2178 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2164 2180 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2165 2181 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
2166 2182 8.731591 ATATAAAATACTCCCTCCGTTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
2169 2185 9.597170 GATTATATAAAATACTCCCTCCGTTCC 57.403 37.037 0.00 0.00 0.00 3.62
2295 2489 8.967918 ACATCATCATCATCAACTCAGATTTTT 58.032 29.630 0.00 0.00 0.00 1.94
2296 2490 8.406297 CACATCATCATCATCAACTCAGATTTT 58.594 33.333 0.00 0.00 0.00 1.82
2297 2491 7.468768 GCACATCATCATCATCAACTCAGATTT 60.469 37.037 0.00 0.00 0.00 2.17
2298 2492 6.017026 GCACATCATCATCATCAACTCAGATT 60.017 38.462 0.00 0.00 0.00 2.40
2299 2493 5.470437 GCACATCATCATCATCAACTCAGAT 59.530 40.000 0.00 0.00 0.00 2.90
2300 2494 4.814771 GCACATCATCATCATCAACTCAGA 59.185 41.667 0.00 0.00 0.00 3.27
2301 2495 4.023963 GGCACATCATCATCATCAACTCAG 60.024 45.833 0.00 0.00 0.00 3.35
2302 2496 3.881089 GGCACATCATCATCATCAACTCA 59.119 43.478 0.00 0.00 0.00 3.41
2303 2497 4.023963 CAGGCACATCATCATCATCAACTC 60.024 45.833 0.00 0.00 0.00 3.01
2304 2498 3.883489 CAGGCACATCATCATCATCAACT 59.117 43.478 0.00 0.00 0.00 3.16
2305 2499 3.550233 GCAGGCACATCATCATCATCAAC 60.550 47.826 0.00 0.00 0.00 3.18
2306 2500 2.621526 GCAGGCACATCATCATCATCAA 59.378 45.455 0.00 0.00 0.00 2.57
2307 2501 2.227194 GCAGGCACATCATCATCATCA 58.773 47.619 0.00 0.00 0.00 3.07
2308 2502 1.540267 GGCAGGCACATCATCATCATC 59.460 52.381 0.00 0.00 0.00 2.92
2309 2503 1.133606 TGGCAGGCACATCATCATCAT 60.134 47.619 0.00 0.00 0.00 2.45
2310 2504 0.256464 TGGCAGGCACATCATCATCA 59.744 50.000 0.00 0.00 0.00 3.07
2311 2505 1.540267 GATGGCAGGCACATCATCATC 59.460 52.381 0.00 4.15 43.21 2.92
2312 2506 1.145119 AGATGGCAGGCACATCATCAT 59.855 47.619 18.41 2.29 45.49 2.45
2313 2507 0.549469 AGATGGCAGGCACATCATCA 59.451 50.000 18.41 0.00 45.49 3.07
2314 2508 1.688772 AAGATGGCAGGCACATCATC 58.311 50.000 18.41 10.93 45.49 2.92
2315 2509 2.029623 GAAAGATGGCAGGCACATCAT 58.970 47.619 18.41 8.97 45.49 2.45
2316 2510 1.272037 TGAAAGATGGCAGGCACATCA 60.272 47.619 18.41 10.47 45.49 3.07
2317 2511 1.133790 GTGAAAGATGGCAGGCACATC 59.866 52.381 0.00 6.90 43.87 3.06
2318 2512 1.180029 GTGAAAGATGGCAGGCACAT 58.820 50.000 0.00 0.00 0.00 3.21
2319 2513 0.895100 GGTGAAAGATGGCAGGCACA 60.895 55.000 0.00 0.00 0.00 4.57
2320 2514 0.895100 TGGTGAAAGATGGCAGGCAC 60.895 55.000 0.00 0.00 0.00 5.01
2321 2515 0.178967 TTGGTGAAAGATGGCAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
2322 2516 1.188863 ATTGGTGAAAGATGGCAGGC 58.811 50.000 0.00 0.00 0.00 4.85
2323 2517 2.360165 GCTATTGGTGAAAGATGGCAGG 59.640 50.000 0.00 0.00 0.00 4.85
2324 2518 2.360165 GGCTATTGGTGAAAGATGGCAG 59.640 50.000 0.00 0.00 0.00 4.85
2325 2519 2.378038 GGCTATTGGTGAAAGATGGCA 58.622 47.619 0.00 0.00 0.00 4.92
2326 2520 1.334869 CGGCTATTGGTGAAAGATGGC 59.665 52.381 0.00 0.00 0.00 4.40
2327 2521 2.614057 GACGGCTATTGGTGAAAGATGG 59.386 50.000 0.00 0.00 0.00 3.51
2328 2522 3.270027 TGACGGCTATTGGTGAAAGATG 58.730 45.455 0.00 0.00 0.00 2.90
2329 2523 3.197766 TCTGACGGCTATTGGTGAAAGAT 59.802 43.478 0.00 0.00 0.00 2.40
2330 2524 2.565391 TCTGACGGCTATTGGTGAAAGA 59.435 45.455 0.00 0.00 0.00 2.52
2331 2525 2.972625 TCTGACGGCTATTGGTGAAAG 58.027 47.619 0.00 0.00 0.00 2.62
2332 2526 3.197766 AGATCTGACGGCTATTGGTGAAA 59.802 43.478 0.00 0.00 0.00 2.69
2333 2527 2.766263 AGATCTGACGGCTATTGGTGAA 59.234 45.455 0.00 0.00 0.00 3.18
2334 2528 2.388735 AGATCTGACGGCTATTGGTGA 58.611 47.619 0.00 0.00 0.00 4.02
2335 2529 2.898729 AGATCTGACGGCTATTGGTG 57.101 50.000 0.00 0.00 0.00 4.17
2336 2530 3.833732 TCTAGATCTGACGGCTATTGGT 58.166 45.455 5.18 0.00 0.00 3.67
2337 2531 4.704540 AGATCTAGATCTGACGGCTATTGG 59.295 45.833 30.29 0.00 45.77 3.16
2338 2532 5.895636 AGATCTAGATCTGACGGCTATTG 57.104 43.478 30.29 0.00 45.77 1.90
2350 2544 7.829725 ACTGTAGCATTCATCAGATCTAGATC 58.170 38.462 22.92 22.92 38.09 2.75
2351 2545 7.779754 ACTGTAGCATTCATCAGATCTAGAT 57.220 36.000 4.47 4.47 0.00 1.98
2352 2546 7.594351 AACTGTAGCATTCATCAGATCTAGA 57.406 36.000 0.00 0.00 0.00 2.43
2353 2547 8.549548 CAAAACTGTAGCATTCATCAGATCTAG 58.450 37.037 0.00 0.00 0.00 2.43
2354 2548 7.011763 GCAAAACTGTAGCATTCATCAGATCTA 59.988 37.037 0.00 0.00 0.00 1.98
2355 2549 6.183360 GCAAAACTGTAGCATTCATCAGATCT 60.183 38.462 0.00 0.00 0.00 2.75
2356 2550 5.970023 GCAAAACTGTAGCATTCATCAGATC 59.030 40.000 0.00 0.00 0.00 2.75
2357 2551 5.651139 AGCAAAACTGTAGCATTCATCAGAT 59.349 36.000 0.00 0.00 0.00 2.90
2358 2552 5.005740 AGCAAAACTGTAGCATTCATCAGA 58.994 37.500 0.00 0.00 0.00 3.27
2359 2553 5.306532 AGCAAAACTGTAGCATTCATCAG 57.693 39.130 0.00 0.00 0.00 2.90
2360 2554 6.816134 TTAGCAAAACTGTAGCATTCATCA 57.184 33.333 0.00 0.00 0.00 3.07
2361 2555 8.023128 TCTTTTAGCAAAACTGTAGCATTCATC 58.977 33.333 0.00 0.00 0.00 2.92
2362 2556 7.885297 TCTTTTAGCAAAACTGTAGCATTCAT 58.115 30.769 0.00 0.00 0.00 2.57
2363 2557 7.270757 TCTTTTAGCAAAACTGTAGCATTCA 57.729 32.000 0.00 0.00 0.00 2.57
2364 2558 7.809806 ACATCTTTTAGCAAAACTGTAGCATTC 59.190 33.333 0.00 0.00 0.00 2.67
2365 2559 7.661040 ACATCTTTTAGCAAAACTGTAGCATT 58.339 30.769 0.00 0.00 0.00 3.56
2366 2560 7.219484 ACATCTTTTAGCAAAACTGTAGCAT 57.781 32.000 0.00 0.00 0.00 3.79
2367 2561 6.293955 GGACATCTTTTAGCAAAACTGTAGCA 60.294 38.462 0.00 0.00 0.00 3.49
2368 2562 6.086871 GGACATCTTTTAGCAAAACTGTAGC 58.913 40.000 0.00 0.00 0.00 3.58
2369 2563 6.307155 CGGACATCTTTTAGCAAAACTGTAG 58.693 40.000 0.00 0.00 0.00 2.74
2370 2564 5.334569 GCGGACATCTTTTAGCAAAACTGTA 60.335 40.000 0.00 0.00 0.00 2.74
2371 2565 4.556699 GCGGACATCTTTTAGCAAAACTGT 60.557 41.667 0.00 0.00 0.00 3.55
2372 2566 3.914364 GCGGACATCTTTTAGCAAAACTG 59.086 43.478 0.00 0.00 0.00 3.16
2373 2567 3.568007 TGCGGACATCTTTTAGCAAAACT 59.432 39.130 0.00 0.00 0.00 2.66
2374 2568 3.668656 GTGCGGACATCTTTTAGCAAAAC 59.331 43.478 0.63 0.00 36.32 2.43
2375 2569 3.568007 AGTGCGGACATCTTTTAGCAAAA 59.432 39.130 10.52 0.00 36.32 2.44
2376 2570 3.146066 AGTGCGGACATCTTTTAGCAAA 58.854 40.909 10.52 0.00 36.32 3.68
2377 2571 2.778299 AGTGCGGACATCTTTTAGCAA 58.222 42.857 10.52 0.00 36.32 3.91
2378 2572 2.472695 AGTGCGGACATCTTTTAGCA 57.527 45.000 10.52 0.00 0.00 3.49
2379 2573 2.484264 ACAAGTGCGGACATCTTTTAGC 59.516 45.455 10.52 0.00 0.00 3.09
2380 2574 4.749245 AACAAGTGCGGACATCTTTTAG 57.251 40.909 10.52 0.00 0.00 1.85
2381 2575 4.023536 GGAAACAAGTGCGGACATCTTTTA 60.024 41.667 10.52 0.00 0.00 1.52
2382 2576 3.243401 GGAAACAAGTGCGGACATCTTTT 60.243 43.478 10.52 2.77 0.00 2.27
2383 2577 2.293399 GGAAACAAGTGCGGACATCTTT 59.707 45.455 10.52 0.00 0.00 2.52
2384 2578 1.880027 GGAAACAAGTGCGGACATCTT 59.120 47.619 10.52 0.00 0.00 2.40
2385 2579 1.202758 TGGAAACAAGTGCGGACATCT 60.203 47.619 10.52 0.00 37.44 2.90
2386 2580 1.234821 TGGAAACAAGTGCGGACATC 58.765 50.000 10.52 0.00 37.44 3.06
2387 2581 3.412722 TGGAAACAAGTGCGGACAT 57.587 47.368 10.52 0.00 37.44 3.06
2388 2582 4.966123 TGGAAACAAGTGCGGACA 57.034 50.000 10.52 0.00 37.44 4.02
2392 2586 8.204122 TTGTTTGTACATATGGAAACAAGTGCG 61.204 37.037 24.35 0.00 41.19 5.34
2393 2587 6.920758 TTGTTTGTACATATGGAAACAAGTGC 59.079 34.615 24.35 16.62 41.19 4.40
2394 2588 8.134895 AGTTGTTTGTACATATGGAAACAAGTG 58.865 33.333 28.07 1.80 44.46 3.16
2395 2589 8.232913 AGTTGTTTGTACATATGGAAACAAGT 57.767 30.769 26.56 26.19 44.64 3.16
2396 2590 8.349245 TGAGTTGTTTGTACATATGGAAACAAG 58.651 33.333 26.56 0.00 44.64 3.16
2397 2591 8.226819 TGAGTTGTTTGTACATATGGAAACAA 57.773 30.769 24.35 24.35 42.87 2.83
2398 2592 7.809546 TGAGTTGTTTGTACATATGGAAACA 57.190 32.000 18.57 18.57 38.47 2.83
2399 2593 9.128107 CAATGAGTTGTTTGTACATATGGAAAC 57.872 33.333 7.80 12.58 33.44 2.78
2400 2594 8.855110 ACAATGAGTTGTTTGTACATATGGAAA 58.145 29.630 7.80 0.00 46.07 3.13
2401 2595 8.402798 ACAATGAGTTGTTTGTACATATGGAA 57.597 30.769 7.80 0.00 46.07 3.53
2402 2596 7.994425 ACAATGAGTTGTTTGTACATATGGA 57.006 32.000 7.80 0.00 46.07 3.41
2424 2618 6.438741 AGAGATAAGGTTGATTGTGAGAGACA 59.561 38.462 0.00 0.00 0.00 3.41
2425 2619 6.872920 AGAGATAAGGTTGATTGTGAGAGAC 58.127 40.000 0.00 0.00 0.00 3.36
2426 2620 7.364232 GGAAGAGATAAGGTTGATTGTGAGAGA 60.364 40.741 0.00 0.00 0.00 3.10
2427 2621 6.760770 GGAAGAGATAAGGTTGATTGTGAGAG 59.239 42.308 0.00 0.00 0.00 3.20
2428 2622 6.352222 GGGAAGAGATAAGGTTGATTGTGAGA 60.352 42.308 0.00 0.00 0.00 3.27
2429 2623 5.819901 GGGAAGAGATAAGGTTGATTGTGAG 59.180 44.000 0.00 0.00 0.00 3.51
2430 2624 5.339200 GGGGAAGAGATAAGGTTGATTGTGA 60.339 44.000 0.00 0.00 0.00 3.58
2431 2625 4.884164 GGGGAAGAGATAAGGTTGATTGTG 59.116 45.833 0.00 0.00 0.00 3.33
2432 2626 4.540099 TGGGGAAGAGATAAGGTTGATTGT 59.460 41.667 0.00 0.00 0.00 2.71
2433 2627 4.884164 GTGGGGAAGAGATAAGGTTGATTG 59.116 45.833 0.00 0.00 0.00 2.67
2434 2628 4.079730 GGTGGGGAAGAGATAAGGTTGATT 60.080 45.833 0.00 0.00 0.00 2.57
2435 2629 3.459969 GGTGGGGAAGAGATAAGGTTGAT 59.540 47.826 0.00 0.00 0.00 2.57
2436 2630 2.844348 GGTGGGGAAGAGATAAGGTTGA 59.156 50.000 0.00 0.00 0.00 3.18
2437 2631 2.420129 CGGTGGGGAAGAGATAAGGTTG 60.420 54.545 0.00 0.00 0.00 3.77
2438 2632 1.838077 CGGTGGGGAAGAGATAAGGTT 59.162 52.381 0.00 0.00 0.00 3.50
2439 2633 1.497161 CGGTGGGGAAGAGATAAGGT 58.503 55.000 0.00 0.00 0.00 3.50
2440 2634 0.106894 GCGGTGGGGAAGAGATAAGG 59.893 60.000 0.00 0.00 0.00 2.69
2441 2635 0.830648 TGCGGTGGGGAAGAGATAAG 59.169 55.000 0.00 0.00 0.00 1.73
2442 2636 1.416401 GATGCGGTGGGGAAGAGATAA 59.584 52.381 0.00 0.00 0.00 1.75
2443 2637 1.048601 GATGCGGTGGGGAAGAGATA 58.951 55.000 0.00 0.00 0.00 1.98
2444 2638 1.700042 GGATGCGGTGGGGAAGAGAT 61.700 60.000 0.00 0.00 0.00 2.75
2445 2639 2.367202 GGATGCGGTGGGGAAGAGA 61.367 63.158 0.00 0.00 0.00 3.10
2446 2640 2.190578 GGATGCGGTGGGGAAGAG 59.809 66.667 0.00 0.00 0.00 2.85
2447 2641 2.609299 TGGATGCGGTGGGGAAGA 60.609 61.111 0.00 0.00 0.00 2.87
2448 2642 2.124570 CTGGATGCGGTGGGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
2449 2643 2.196997 CTTCTGGATGCGGTGGGGAA 62.197 60.000 0.00 0.00 0.00 3.97
2450 2644 2.609299 TTCTGGATGCGGTGGGGA 60.609 61.111 0.00 0.00 0.00 4.81
2451 2645 2.124570 CTTCTGGATGCGGTGGGG 60.125 66.667 0.00 0.00 0.00 4.96
2452 2646 2.124570 CCTTCTGGATGCGGTGGG 60.125 66.667 0.00 0.00 34.57 4.61
2453 2647 2.825836 GCCTTCTGGATGCGGTGG 60.826 66.667 0.00 0.00 34.57 4.61
2454 2648 2.825836 GGCCTTCTGGATGCGGTG 60.826 66.667 0.00 0.00 34.57 4.94
2455 2649 2.683465 ATGGCCTTCTGGATGCGGT 61.683 57.895 3.32 0.00 34.57 5.68
2456 2650 2.191513 CATGGCCTTCTGGATGCGG 61.192 63.158 3.32 0.00 34.57 5.69
2457 2651 2.191513 CCATGGCCTTCTGGATGCG 61.192 63.158 12.64 0.00 34.24 4.73
2458 2652 0.396139 TTCCATGGCCTTCTGGATGC 60.396 55.000 18.94 0.00 41.09 3.91
2459 2653 1.341285 TGTTCCATGGCCTTCTGGATG 60.341 52.381 18.94 7.21 41.09 3.51
2460 2654 1.002069 TGTTCCATGGCCTTCTGGAT 58.998 50.000 18.94 0.00 41.09 3.41
2461 2655 0.776810 TTGTTCCATGGCCTTCTGGA 59.223 50.000 15.63 15.63 39.78 3.86
2462 2656 1.479323 CATTGTTCCATGGCCTTCTGG 59.521 52.381 6.96 8.83 0.00 3.86
2463 2657 2.094390 CACATTGTTCCATGGCCTTCTG 60.094 50.000 6.96 4.43 0.00 3.02
2464 2658 2.173519 CACATTGTTCCATGGCCTTCT 58.826 47.619 6.96 0.00 0.00 2.85
2465 2659 1.205417 CCACATTGTTCCATGGCCTTC 59.795 52.381 6.96 0.00 0.00 3.46
2466 2660 1.269012 CCACATTGTTCCATGGCCTT 58.731 50.000 6.96 0.00 0.00 4.35
2467 2661 0.114954 ACCACATTGTTCCATGGCCT 59.885 50.000 6.96 0.00 35.49 5.19
2468 2662 0.247185 CACCACATTGTTCCATGGCC 59.753 55.000 6.96 0.00 35.49 5.36
2469 2663 0.968405 ACACCACATTGTTCCATGGC 59.032 50.000 6.96 0.00 35.49 4.40
2470 2664 2.237643 TCACACCACATTGTTCCATGG 58.762 47.619 4.97 4.97 38.26 3.66
2471 2665 3.367600 CCATCACACCACATTGTTCCATG 60.368 47.826 0.00 0.00 0.00 3.66
2472 2666 2.827322 CCATCACACCACATTGTTCCAT 59.173 45.455 0.00 0.00 0.00 3.41
2473 2667 2.237643 CCATCACACCACATTGTTCCA 58.762 47.619 0.00 0.00 0.00 3.53
2474 2668 1.067635 GCCATCACACCACATTGTTCC 60.068 52.381 0.00 0.00 0.00 3.62
2475 2669 1.067635 GGCCATCACACCACATTGTTC 60.068 52.381 0.00 0.00 0.00 3.18
2476 2670 0.968405 GGCCATCACACCACATTGTT 59.032 50.000 0.00 0.00 0.00 2.83
2477 2671 1.243342 CGGCCATCACACCACATTGT 61.243 55.000 2.24 0.00 0.00 2.71
2478 2672 1.507630 CGGCCATCACACCACATTG 59.492 57.895 2.24 0.00 0.00 2.82
2479 2673 2.342650 GCGGCCATCACACCACATT 61.343 57.895 2.24 0.00 0.00 2.71
2480 2674 2.751436 GCGGCCATCACACCACAT 60.751 61.111 2.24 0.00 0.00 3.21
2481 2675 3.952508 AGCGGCCATCACACCACA 61.953 61.111 2.24 0.00 0.00 4.17
2482 2676 3.434319 CAGCGGCCATCACACCAC 61.434 66.667 2.24 0.00 0.00 4.16
2504 2698 4.733542 AATTGGGGGTGGACGGCG 62.734 66.667 4.80 4.80 0.00 6.46
2505 2699 1.911269 AAAATTGGGGGTGGACGGC 60.911 57.895 0.00 0.00 0.00 5.68
2506 2700 1.540435 CCAAAATTGGGGGTGGACGG 61.540 60.000 4.18 0.00 44.70 4.79
2507 2701 1.971418 CCAAAATTGGGGGTGGACG 59.029 57.895 4.18 0.00 44.70 4.79
2517 2711 2.126467 CTGCACGGAACACCAAAATTG 58.874 47.619 0.00 0.00 0.00 2.32
2518 2712 1.754226 ACTGCACGGAACACCAAAATT 59.246 42.857 0.00 0.00 0.00 1.82
2519 2713 1.066908 CACTGCACGGAACACCAAAAT 59.933 47.619 0.00 0.00 0.00 1.82
2520 2714 0.453793 CACTGCACGGAACACCAAAA 59.546 50.000 0.00 0.00 0.00 2.44
2521 2715 1.999071 GCACTGCACGGAACACCAAA 61.999 55.000 0.00 0.00 0.00 3.28
2522 2716 2.477176 GCACTGCACGGAACACCAA 61.477 57.895 0.00 0.00 0.00 3.67
2523 2717 2.899838 GCACTGCACGGAACACCA 60.900 61.111 0.00 0.00 0.00 4.17
2524 2718 2.899838 TGCACTGCACGGAACACC 60.900 61.111 0.00 0.00 31.71 4.16
2539 2733 2.311124 AACTAGTAAGATGCCCGTGC 57.689 50.000 0.00 0.00 38.26 5.34
2540 2734 5.258456 TCTAAACTAGTAAGATGCCCGTG 57.742 43.478 0.00 0.00 0.00 4.94
2541 2735 7.450634 TCATATCTAAACTAGTAAGATGCCCGT 59.549 37.037 22.24 6.48 32.39 5.28
2542 2736 7.827701 TCATATCTAAACTAGTAAGATGCCCG 58.172 38.462 22.24 12.38 32.39 6.13
2631 2825 6.500684 TGCTGATTTTAGCTGTTCCTAAAG 57.499 37.500 0.00 0.00 44.01 1.85
2684 2878 1.815866 TCGGATCATTGCGAGCTGA 59.184 52.632 0.00 0.00 43.16 4.26
2786 3063 0.897621 TCACAGCTCACATGACGGAT 59.102 50.000 0.00 0.00 0.00 4.18
3150 3428 8.847567 GCTTCATAATTCATAAGCATCAAATCG 58.152 33.333 11.59 0.00 43.00 3.34
3164 3442 6.435430 ACGTTTATGCTGCTTCATAATTCA 57.565 33.333 0.00 0.00 38.34 2.57
3410 3688 7.771927 ACATTCCAAATTCAGTTCAGAGAAT 57.228 32.000 0.00 0.00 36.09 2.40
3604 3882 5.518848 TTCACAAAGATCTGCAACACAAT 57.481 34.783 0.00 0.00 0.00 2.71
3620 3898 6.151985 ACAATGTGTCCACTAGTTTTTCACAA 59.848 34.615 17.60 7.42 37.74 3.33
3705 3983 5.403766 GCTCATCAGTTATGTCCTCATTACG 59.596 44.000 0.00 0.00 38.24 3.18
4129 4407 5.710984 ACAAAGTATGGACTGAAGACGTAG 58.289 41.667 0.00 0.00 35.52 3.51
4313 4591 2.684001 TGAACTTGTCTGTCCAACGT 57.316 45.000 0.00 0.00 0.00 3.99
4499 4777 7.046033 GGCACCATTATTAGTTGTACTGTAGT 58.954 38.462 0.00 0.00 0.00 2.73
4850 5128 1.876156 GAATCATCGGCATGGTCCTTC 59.124 52.381 0.00 0.00 0.00 3.46
5324 5603 5.313712 TGTCTGAGAATTTGGGGAGTAAAC 58.686 41.667 0.00 0.00 0.00 2.01
5343 5622 1.216990 GTCCCCCATCCAAGATGTCT 58.783 55.000 4.04 0.00 0.00 3.41
5481 5760 5.359576 GCCATATACAGGGTGTTGAATTTGA 59.640 40.000 0.00 0.00 0.00 2.69
5617 5896 9.105844 ACAAATGTATGGGCTCTACTAATCTAT 57.894 33.333 0.00 0.00 0.00 1.98
5851 6130 9.383519 TGGAACTTCAGTGAATATACATTCTTC 57.616 33.333 5.91 0.00 41.09 2.87
6001 6281 1.153429 GGATGTACGGCCAGACCAC 60.153 63.158 2.24 0.00 39.03 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.